RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10560
(74 letters)
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 44.3 bits (103), Expect = 4e-07
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 32 HTSLTQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQC 71
C C HG CV +CVC+ W G YC+ +
Sbjct: 529 DNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPET 568
Score = 30.8 bits (68), Expect = 0.028
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 16 YAVSHSGHSEGIQDSEHTSLTQPLCDKDCGTHGHCV-GDACVCNAGWSGEYCNL 68
Y + S+ + + P C++ C HG C+ G C+C+ G+SG C +
Sbjct: 164 YQGFYPAGSQPVTWAIDNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKI 217
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.8 bits (82), Expect = 3e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
+ C HG C C+C++ W+G YCN +
Sbjct: 532 KGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTD 565
Score = 32.0 bits (72), Expect = 0.009
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCNLQ-QCDN 73
C G C+ CVC++ G+ +CD+
Sbjct: 491 GQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDD 525
Score = 29.7 bits (66), Expect = 0.058
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCD 72
+P + +G C C GW G C + D
Sbjct: 442 EPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEED 477
Score = 28.5 bits (63), Expect = 0.13
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 38 PLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDNR 74
P C C C C G + C+
Sbjct: 602 PTCPDACTFKKEC----VECKKFDRGALHDENTCNRY 634
Score = 27.7 bits (61), Expect = 0.30
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 40 CDKDCGTHGHCVGDACVCNA-GWSGEYCN 67
C G C +CVC G G+ C
Sbjct: 571 NGLLCSGRGKCECGSCVCIQPGSYGDTCE 599
Score = 25.8 bits (56), Expect = 1.6
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
+ C++ C V + + G C + D+
Sbjct: 628 ENTCNRYCRDEIESVK--ELKDTGKDAVNCTYKNEDD 662
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 36.1 bits (82), Expect = 3e-04
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 36 TQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
TQP GH C C G G C + +N
Sbjct: 462 TQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLEN 499
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 34.9 bits (79), Expect = 0.001
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYC 66
+P + +G C C GW G C
Sbjct: 442 EPNSHRCNNGNGTFECGVCRCGPGWLGSQC 471
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 34.3 bits (77), Expect = 0.001
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 36 TQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
C C HG C+ C C+ G++
Sbjct: 190 ISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTP 227
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 34.2 bits (78), Expect = 0.002
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 38 PLCDKDCGTHGHCVG-DACVCNAGWSGEYCNLQQCD 72
C + C +G+C C C+ GW G++C +C+
Sbjct: 393 SECSRLCR-NGYCTPTGKCCCSPGWEGDFCRTAKCE 427
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 32.5 bits (74), Expect = 0.005
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 38 PLCDKDCGTHGHCVGD-ACVCNAGWSGEYCNLQQCDN 73
C + C G C+G C C+ G+ G+ C+ C+
Sbjct: 245 SKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP 281
Score = 32.5 bits (74), Expect = 0.006
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 37 QPLCDKDCGTHGHCV-GDACVCNAGWSGEYCNLQQCDN 73
+ C C G C C+C G GE C + +C
Sbjct: 212 KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQ 249
Score = 31.7 bits (72), Expect = 0.009
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 37 QPLCDKDCGTHGHCV-GDACVCNAGWSGEYCNLQQCD 72
+P+C+ CG HG C + C C GW G +CN +
Sbjct: 276 KPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA 312
Score = 31.0 bits (70), Expect = 0.016
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 37 QPLCDKDCGTHGHCV-GDACVCNAGWSGEYCNLQQCDN 73
Q C C G C C C G+ G +C C
Sbjct: 148 QAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTP 185
Score = 30.2 bits (68), Expect = 0.036
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 37 QPLCDKDCGTHGHCV-GDACVCNAGWSGEYCNLQQCDN 73
+ LC C G CV C+C G+ G C+ C
Sbjct: 180 KALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCST 217
Score = 25.2 bits (55), Expect = 2.3
Identities = 3/38 (7%), Positives = 9/38 (23%), Gaps = 2/38 (5%)
Query: 36 TQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
+ + G+ + + C +C
Sbjct: 118 AFEVDVIVMNSEGNTI--LKTPQNAIFFKTCQQAECPG 153
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 32.4 bits (73), Expect = 0.007
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
G C C C+ G+ G C ++
Sbjct: 525 QVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTE 558
Score = 32.0 bits (72), Expect = 0.008
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCD 72
+C G C + C C++G+ C
Sbjct: 564 RRVECSGRGRCRCNVCECHSGYQLPLCQECPGC 596
Score = 31.2 bits (70), Expect = 0.017
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
Q C G C C+ G+ G+ C Q
Sbjct: 430 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGR 466
Score = 29.3 bits (65), Expect = 0.091
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 38 PLCDKDCGTHGHCVGDACVCNAGWSGEYCN 67
P C CG + C + G G+ C+
Sbjct: 594 PGCPSPCGKYISCA-ECLKFEKGPFGKNCS 622
Score = 27.8 bits (61), Expect = 0.28
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 38 PLCDKDCGTHGHCVGDACVCNAGWSGEYC 66
C G CV C+C+
Sbjct: 478 DNNSIICSGLGDCVCGQCLCHTSDVPGKL 506
Score = 25.4 bits (55), Expect = 1.6
Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 40 CDKDCGTHGHCVG-DACVCNAGWSGEYCNLQQC 71
+ C D+ C ++ E +
Sbjct: 630 LSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDR 662
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 31.4 bits (70), Expect = 0.012
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
Q C G C C+ G+ G+ C Q
Sbjct: 191 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGR 227
Score = 24.4 bits (52), Expect = 4.5
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 9/39 (23%)
Query: 41 DKDCGTHGHCVGDACVCNAG------WSGEYCNLQQCDN 73
C G CV C+C+ G+YC + +
Sbjct: 242 SIICSGLGDCVCGQCLCHTSDVPGKLIYGQYC---EHHH 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.032
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 22/59 (37%)
Query: 23 HSEGIQDSEHTSLTQP------------LCDKDCGTHGHCVGDACVCNAGWS-GEYCNL 68
+G+ + T TQP L K G DA AG S GEY L
Sbjct: 1721 SEKGLLSA--TQFTQPALTLMEKAAFEDLKSK-----GLIPADATF--AGHSLGEYAAL 1770
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 30.3 bits (67), Expect = 0.033
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 32 HTSLTQPLCDKDCGTHGHCVGDA-CVCNAGWSGEYCNLQQCDN 73
+ Q C C G C C C G+ G +C + +
Sbjct: 143 FKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTKHHH 185
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 28.8 bits (64), Expect = 0.12
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 37 QPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
Q C G C C+ G+ G+ C Q
Sbjct: 91 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGR 127
Score = 28.0 bits (62), Expect = 0.22
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYC 66
G C C C+ G+ G C
Sbjct: 190 GPGRGLCFCGKCRCHPGFEGSAC 212
Score = 25.3 bits (55), Expect = 1.7
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYC 66
C G CV C+C+
Sbjct: 141 NSIICSGLGDCVCGQCLCHTSDVPGKL 167
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.8 bits (62), Expect = 0.24
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 36 TQPLCDKDCGTHGHCVGD----ACVCNAGWSGEYC-NLQQCDNR 74
T D C G C+ C C G+ G C ++ D++
Sbjct: 119 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDDK 162
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.3 bits (58), Expect = 0.80
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 40 CDKDCGTHGHCVGDA----CVCNAGWSGEYCNLQQCDNR 74
C HG CV C C+ G+ G C Q D R
Sbjct: 123 QPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQVDPR 161
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 25.7 bits (56), Expect = 1.6
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 55 CVCNAGWSGEYC 66
C C GW +C
Sbjct: 399 CRCYPGWQAPWC 410
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein,
glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease
mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo
sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A*
3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A*
3hg5_A* 3gxp_A* 3s5y_A*
Length = 404
Score = 25.6 bits (55), Expect = 1.6
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 17 AVSHSGHSEGIQDSEHTSLTQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCDN 73
+++ HS+G++ + + C G+ G+ DA A W + C
Sbjct: 88 QLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTF-ADWGVDLLKFAGCYC 143
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1
d.145.1.3 PDB: 1sb3_B*
Length = 324
Score = 25.5 bits (56), Expect = 1.8
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCNL 68
C K G H + + C A + G+
Sbjct: 138 CLKYKGDKCHVIVKSDRCYATYHGDVAPA 166
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with
GG domain, structural genomics, joint center for
structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Length = 342
Score = 25.2 bits (55), Expect = 2.0
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 46 THGHCVGDAC 55
+GH GD
Sbjct: 230 NYGHQTGDRI 239
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens}
PDB: 2kb9_A
Length = 169
Score = 25.0 bits (55), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 40 CDKDCGTHGHCVGD-ACVCNAGWSGEYCN 67
HG G A C+ + G CN
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCN 31
Score = 23.9 bits (52), Expect = 6.0
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 44 CGTHGHCV-GDACVCNAGWSGEYCN 67
HG C C C GW G YC+
Sbjct: 73 SPKHGSCKLPGDCRCQYGWQGLYCD 97
Score = 23.5 bits (51), Expect = 8.7
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 40 CDKDCGTHGHCVGD-ACVCNAGWSGEYCNLQQCDN 73
D H C + C GW G CN C
Sbjct: 36 PRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQ 70
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FAD; 2.69A {Listeria monocytogenes}
Length = 322
Score = 25.2 bits (56), Expect = 2.4
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 42 KDCGTHGHCVGDACV----CN 58
+D G GH +G A V
Sbjct: 259 QDSGLQGHIIGGAQVSLKHAG 279
>3bre_A Probable two-component response regulator; protein-nucleotide
complex, signaling protein; HET: C2E; 2.40A {Pseudomonas
aeruginosa} PDB: 3i5a_A*
Length = 358
Score = 25.1 bits (55), Expect = 2.6
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 31 EHTSLTQPLCDKDC-----GTHGHCVGDAC 55
E + L+ + D D T GH GD
Sbjct: 199 EQSQLSLLMIDVDYFKSYNDTFGHVAGDEA 228
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 24.4 bits (53), Expect = 4.1
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 46 THGHCVGDAC 55
T GH +GD
Sbjct: 336 TFGHDIGDEV 345
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition,
xanthomonas Ca signaling protein-inhibitor complex;
HET: C2E; 1.90A {Xanthomonas campestris PV}
Length = 167
Score = 23.6 bits (52), Expect = 6.8
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 46 THGHCVGDAC 55
GH GD
Sbjct: 59 RFGHLAGDRV 68
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 24.0 bits (51), Expect = 7.0
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 40 CDKDCGTHGHCVGDA-CVCNAGWSGEYCNLQ 69
C +G C + CVCN W G CN
Sbjct: 452 EGTICSGNGVCSNELKCVCNRHWIGSDCNTY 482
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A,
structural genomics, PSI-2, protein structure
initiative; HET: C2E; 1.83A {Marinobacter aquaeolei
VT8}
Length = 177
Score = 23.6 bits (52), Expect = 7.4
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 46 THGHCVGDAC 55
T+GH GD
Sbjct: 56 TYGHLAGDEV 65
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 23.2 bits (50), Expect = 8.5
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 36 TQPLCDKDCGTHGHCVGD----ACVCNAGWSGEYC 66
T + C HG CV C C+ G+SG C
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.457
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,060,922
Number of extensions: 46189
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 152
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)