RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10560
         (74 letters)



>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 27.5 bits (61), Expect = 0.025
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
          C  HG C    C+C++ W+G YCN
Sbjct: 5  CSGHGQCSCGDCLCDSDWTGYYCN 28


>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 41

 Score = 27.1 bits (60), Expect = 0.048
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 44 CGTHGHCVGDACVCNAGWSGEYC 66
              G C    C C+ G+ G  C
Sbjct: 17 GPGRGLCFCGKCRCHPGFEGSAC 39


>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 43

 Score = 23.6 bits (51), Expect = 1.1
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 44 CGTHGHCVGDACVCNA-GWSGEYC 66
          C   G C   +CVC   G  G+ C
Sbjct: 13 CSGRGKCECGSCVCIQPGSYGDTC 36


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
          [TaxId: 4682]}
          Length = 425

 Score = 22.3 bits (47), Expect = 8.1
 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 8/34 (23%)

Query: 41 DKDCGTHGHCVGD--------ACVCNAGWSGEYC 66
          + +C  HG    D         C CN  ++G  C
Sbjct: 17 NINCSEHGRAFLDGIISEGSPKCECNTCYTGPDC 50


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
          IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 21.3 bits (45), Expect = 8.1
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 40 CDKDCGTHGHCV----GDACVCNAGWSGEYC 66
          C   C  HG C+      +C C +GW G +C
Sbjct: 11 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFC 41


>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 143

 Score = 22.0 bits (46), Expect = 9.3
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 16  YAVSHSGHSE-GIQDSEHTSLTQPLCDKDCG 45
           +    +G+ E G  +++  SLT P+   +C 
Sbjct: 99  FVRQGTGNDEAGAANADVVSLTCPVAAGECA 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.457 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,603
Number of extensions: 9945
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 50
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)