Query psy10561
Match_columns 73
No_of_seqs 51 out of 53
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 21:33:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kya_A Putative phosphatase; s 90.1 0.057 1.9E-06 42.1 -0.0 42 9-50 411-454 (496)
2 4hw6_A Hypothetical protein, I 86.8 0.33 1.1E-05 35.7 2.3 40 9-52 375-415 (433)
3 3tc9_A Hypothetical hydrolase; 70.1 2.4 8.1E-05 30.9 2.2 21 30-50 389-409 (430)
4 3hrp_A Uncharacterized protein 62.2 4.9 0.00017 28.8 2.5 23 28-51 312-334 (409)
5 3hrp_A Uncharacterized protein 42.9 8.9 0.00031 27.4 1.3 20 32-51 372-391 (409)
6 3csy_I Envelope glycoprotein G 31.8 37 0.0013 26.0 3.2 53 7-59 93-154 (334)
7 3s88_I GP1, GP, envelope glyco 29.8 35 0.0012 25.8 2.7 56 7-62 93-157 (298)
8 1pqh_A Aspartate 1-decarboxyla 28.6 7.4 0.00025 26.9 -1.1 25 34-58 32-56 (143)
9 3fvz_A Peptidyl-glycine alpha- 26.8 22 0.00075 23.7 1.1 19 33-51 17-35 (329)
10 1aut_L Activated protein C; se 26.2 27 0.00091 21.0 1.3 27 15-41 87-113 (114)
11 3oug_A Aspartate 1-decarboxyla 25.8 7.9 0.00027 25.8 -1.3 25 34-58 18-42 (114)
12 2c45_A Aspartate 1-decarboxyla 24.7 9.1 0.00031 26.3 -1.2 25 34-58 15-39 (139)
13 2p4o_A Hypothetical protein; p 20.8 40 0.0014 22.3 1.4 16 37-52 209-224 (306)
No 1
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.06 E-value=0.057 Score=42.14 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=30.2
Q ss_pred ccceEECCcceecCCCCCcC--CCCcccchhhhcCCCceeeecC
Q psy10561 9 NVEPAVGSGERCLPGDEAHC--GDGAPARDAKLAYPKGKNYNRS 50 (73)
Q Consensus 9 N~EvvaG~Ge~ClP~de~~C--GDGG~A~eAtL~~PkGIAvdk~ 50 (73)
...-++|++.++...+...| .||+++.+|+|.+|.|||||+.
T Consensus 411 ~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 411 IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45567888876411122234 4788999999999999999986
No 2
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=86.80 E-value=0.33 Score=35.67 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=28.6
Q ss_pred ccceEECCcceecCCCCCcCCCCcccchhhhcCCCceeee-cCCc
Q psy10561 9 NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGKNYN-RSLC 52 (73)
Q Consensus 9 N~EvvaG~Ge~ClP~de~~CGDGG~A~eAtL~~PkGIAvd-k~~~ 52 (73)
....++|.+..|.+. ..||..+.+|+|.+|.|||+| +.+.
T Consensus 375 ~v~t~~G~g~~~~~G----~~dG~~~~~~~~~~P~giavd~~~g~ 415 (433)
T 4hw6_A 375 RVTTYAGRGNSREWG----YVDGELRSQALFNHPTSIAYDMKRKC 415 (433)
T ss_dssp EEEEEECCCTTCSSC----CBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred CEEEEEeCCCCCccc----cCCCccccccEeCCCcEEEEECCCCE
Confidence 344567776644222 257779999999999999999 6653
No 3
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=70.08 E-value=2.4 Score=30.90 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.0
Q ss_pred CCcccchhhhcCCCceeeecC
Q psy10561 30 DGAPARDAKLAYPKGKNYNRS 50 (73)
Q Consensus 30 DGG~A~eAtL~~PkGIAvdk~ 50 (73)
||.++.+++|.+|.||+||+.
T Consensus 389 dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETT
T ss_pred CCCchhhcEeCCCcEEEEECC
Confidence 777899999999999999983
No 4
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.21 E-value=4.9 Score=28.78 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.8
Q ss_pred CCCCcccchhhhcCCCceeeecCC
Q psy10561 28 CGDGAPARDAKLAYPKGKNYNRSL 51 (73)
Q Consensus 28 CGDGG~A~eAtL~~PkGIAvdk~~ 51 (73)
-.|+ .+..++|..|.||++|+++
T Consensus 312 ~~dg-~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 312 VQDG-LREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp CBCE-EGGGCBCSSEEEEEECTTC
T ss_pred cCCC-cccccEeCCCeEEEEeCCC
Confidence 3555 8889999999999999987
No 5
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.88 E-value=8.9 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.7
Q ss_pred cccchhhhcCCCceeeecCC
Q psy10561 32 APARDAKLAYPKGKNYNRSL 51 (73)
Q Consensus 32 G~A~eAtL~~PkGIAvdk~~ 51 (73)
+.+.+++|..|.|||||+++
T Consensus 372 g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 372 GTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp BSTTTCCBSSEEEEEECSSS
T ss_pred CChhceEeCCceEEEEcCCC
Confidence 36788999999999999986
No 6
>3csy_I Envelope glycoprotein GP1; glycoprotein-antibody complex, immune system-viral protein C; HET: NAG BMA MAN; 3.40A {Zaire ebola virus}
Probab=31.75 E-value=37 Score=25.96 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCccceEECCcceecCCCCCcCCCCcccc-----hhhhcCCCceeeecCCc----eeeeeEE
Q psy10561 7 DYNVEPAVGSGERCLPGDEAHCGDGAPAR-----DAKLAYPKGKNYNRSLC----SRVGITV 59 (73)
Q Consensus 7 ~~N~EvvaG~Ge~ClP~de~~CGDGG~A~-----eAtL~~PkGIAvdk~~~----~~~~~~~ 59 (73)
+.|.|+.--+|..|+|...+.--+--+++ .-+=..|-|+|+||.+. .|+.-||
T Consensus 93 CYNl~ikk~dGsecLp~~P~gvR~fPrCryVHkvqGtgPc~~~~AfHk~GAFFLYDRlAST~ 154 (334)
T 3csy_I 93 CYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTV 154 (334)
T ss_dssp EEEEEEECSSSCBSSCCCCTTCCCCSCEEEEEEEEEECCCCSSEEEETTSCEEECSSEEESS
T ss_pred eeceEeeCCCcccccCCCcccccCCccceeEEeeccCCCCCCceeEecccceeeehhhhhee
Confidence 34788888899999977665544444433 44556789999999875 4555443
No 7
>3s88_I GP1, GP, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_I*
Probab=29.76 E-value=35 Score=25.83 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.7
Q ss_pred CCccceEECCcceecCCCCCcCCCCcccc-----hhhhcCCCceeeecCCc----eeeeeEEeec
Q psy10561 7 DYNVEPAVGSGERCLPGDEAHCGDGAPAR-----DAKLAYPKGKNYNRSLC----SRVGITVGLH 62 (73)
Q Consensus 7 ~~N~EvvaG~Ge~ClP~de~~CGDGG~A~-----eAtL~~PkGIAvdk~~~----~~~~~~~~~~ 62 (73)
+.|.|+.--+|..|+|.....=-+--+++ .-+=-.|-|+|+||.|. .|+.-||-.|
T Consensus 93 CYNl~i~k~dG~~cLp~pP~gvrg~PrCryVHk~~G~gPcpgg~AfHk~GaFFLYdrlASTviYr 157 (298)
T 3s88_I 93 CYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYR 157 (298)
T ss_dssp EEEECCBCTTSCBSSCCCCTTCCCCSCEEEEEEECCBCCCCSSEEEETTSCEEECSSEEESSCCT
T ss_pred eeceEeeCCCCCccCCCCCccccCCccceeEEeeccCCCCCCcceeecccceEEeccceeeEEEe
Confidence 34788888899999976665443333333 33445688999999874 5666555433
No 8
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=28.57 E-value=7.4 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.7
Q ss_pred cchhhhcCCCceeeecCCceeeeeE
Q psy10561 34 ARDAKLAYPKGKNYNRSLCSRVGIT 58 (73)
Q Consensus 34 A~eAtL~~PkGIAvdk~~~~~~~~~ 58 (73)
-++|-|.|--||++|.+++...||.
T Consensus 32 VT~AdL~Y~GSITID~dLldaAgIl 56 (143)
T 1pqh_A 32 VTHADLHYEGTCAIDQDFLDAAGIL 56 (143)
T ss_dssp CCBCCSSSCCCEEEEHHHHHHHTCC
T ss_pred EeccccccceeEEECHHHHHHcCCC
Confidence 3688899999999999999888774
No 9
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=26.78 E-value=22 Score=23.72 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=16.9
Q ss_pred ccchhhhcCCCceeeecCC
Q psy10561 33 PARDAKLAYPKGKNYNRSL 51 (73)
Q Consensus 33 ~A~eAtL~~PkGIAvdk~~ 51 (73)
|+.+++|..|.|+|+|+++
T Consensus 17 p~~~~~l~~v~~va~d~~G 35 (329)
T 3fvz_A 17 PGVYLLPGQVSGVALDSKN 35 (329)
T ss_dssp GGGGCCCSCEEEEEECTTC
T ss_pred chhceecCCceEEEECCCC
Confidence 5678899999999999987
No 10
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=26.19 E-value=27 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=13.2
Q ss_pred CCcceecCCCCCcCCCCcccchhhhcC
Q psy10561 15 GSGERCLPGDEAHCGDGAPARDAKLAY 41 (73)
Q Consensus 15 G~Ge~ClP~de~~CGDGG~A~eAtL~~ 41 (73)
+.+..|.+.++..|+.++...+.+-.+
T Consensus 87 ~~g~~C~~~~~~pC~~~~~~i~~~~~h 113 (114)
T 1aut_L 87 DDLLQCHPAVKFPCGRPWKRMEKKRSH 113 (114)
T ss_dssp TTSSCEEECSSSCTTCCC---------
T ss_pred CCCCccCcCcccCCCCCCccCCCCCCC
Confidence 346677777777888887666655443
No 11
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=25.83 E-value=7.9 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=20.6
Q ss_pred cchhhhcCCCceeeecCCceeeeeE
Q psy10561 34 ARDAKLAYPKGKNYNRSLCSRVGIT 58 (73)
Q Consensus 34 A~eAtL~~PkGIAvdk~~~~~~~~~ 58 (73)
-++|-|.|--||++|.+++...||.
T Consensus 18 VT~a~L~Y~GSitID~~Ll~aA~i~ 42 (114)
T 3oug_A 18 VTGKDLFYVGSITIDSEIMKQANII 42 (114)
T ss_dssp CCEEESSCC-CEEEEHHHHHHTTCC
T ss_pred EecccccccceEEECHHHHHHcCCC
Confidence 3678899999999999999888773
No 12
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=24.73 E-value=9.1 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred cchhhhcCCCceeeecCCceeeeeE
Q psy10561 34 ARDAKLAYPKGKNYNRSLCSRVGIT 58 (73)
Q Consensus 34 A~eAtL~~PkGIAvdk~~~~~~~~~ 58 (73)
-++|-|.|--||++|.+++...||.
T Consensus 15 VT~AdL~Y~GSITID~dLldaAgIl 39 (139)
T 2c45_A 15 VTCADLHYVGSVTIDADLMDAADLL 39 (139)
T ss_dssp CCCEESSSCCEEEEEHHHHHHTTCC
T ss_pred EeccccccceeeEECHHHHHHcCCC
Confidence 3678899999999999999888874
No 13
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=20.84 E-value=40 Score=22.30 Aligned_cols=16 Identities=0% Similarity=-0.151 Sum_probs=13.1
Q ss_pred hhhcCCCceeeecCCc
Q psy10561 37 AKLAYPKGKNYNRSLC 52 (73)
Q Consensus 37 AtL~~PkGIAvdk~~~ 52 (73)
+++..|+||++|+++.
T Consensus 209 ~~~~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 209 VEQTNIDDFAFDVEGN 224 (306)
T ss_dssp EESCCCSSEEEBTTCC
T ss_pred eccCCCCCeEECCCCC
Confidence 4457899999999883
Done!