RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10561
         (73 letters)



>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer
          complex, cytochrome BC1 complex,
          mitochondrialtransmembrane complex; HET: M3L SUC 6PH
          UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus}
          SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X*
          1ezv_X* 3cxh_J*
          Length = 127

 Score = 25.6 bits (57), Expect = 1.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 46 NYNRSLCSRVGITV 59
          NYN SL  R+ IT 
Sbjct: 59 NYNPSLKDRLSITR 72


>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex
          (immunoglobulin/hydrolase), immunoglobulin V region,
          signal, hydrolase, glycosidase, bacteriolytic enzyme,
          egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
          1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B
          1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H
          1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
          Length = 116

 Score = 25.2 bits (56), Expect = 1.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 46 NYNRSLCSRVGITV 59
          +YN +L SR+ I+ 
Sbjct: 58 DYNSALKSRLSISK 71


>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
           immunoglobulin-like, structural GEN joint center for
           structural genomics, JCSG; 2.23A {Bacteroides
           thetaiotaomicron}
          Length = 430

 Score = 25.1 bits (54), Expect = 2.7
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 6   PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 44
           P   V    G G     G      DG   ++A+  +P+G
Sbjct: 369 PQGRVTTFAGRGSNGTSGY----NDGDLRQEARFNHPEG 403


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 24.1 bits (52), Expect = 4.9
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 35   RDAKLAYPKGKNYNRSLCSRVGITVGLHSGGLGFDSWRG 73
              + +     + Y     S VG   G  SG  G  + RG
Sbjct: 1025 IASGIT-DPYEMYKYVHVSEVGNCSG--SGMGGVSALRG 1060


>3kya_A Putative phosphatase; structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PS hydrolase; HET: MSE; 1.77A {Bacteroides
           thetaiotaomicron}
          Length = 496

 Score = 24.1 bits (51), Expect = 5.1
 Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)

Query: 6   PDYNVEPAVGSGERCLPGDEAHCG--DGAPARDAKLAYPKG 44
           P+  V    G G      D    G  DG     A+     G
Sbjct: 408 PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,168,474
Number of extensions: 53940
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)