RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10561
         (73 letters)



>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 285

 Score = 24.6 bits (53), Expect = 1.3
 Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 26  AHCGDGAPARDAKLAYPKGKNYNRSLCSRVGITVGLHSG----GLGF 68
            H  + A   +      K       + S +G  +  H G    G G 
Sbjct: 236 VHADNEAGVVELLNTLRKSYEVVDEIISPMGKVITTHVGPGTVGFGI 282


>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale
          cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId:
          3702]}
          Length = 174

 Score = 23.7 bits (51), Expect = 2.2
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)

Query: 45 KNYNRSLCSRVGITVGL-----HSGGLGFDSW 71
          K Y   L  RVGIT GL     H      + +
Sbjct: 40 KLYTGDLKKRVGITAGLCVVIEHVPEKKGERF 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,083
Number of extensions: 10394
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)