BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10562
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
G +PA A+++ LE A++ +YGV LH AKD + + + L V G+L+++++ +IN F+W
Sbjct: 169 GMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWP 228
Query: 61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ P + ++ + F N K WK CVE+H FFR
Sbjct: 229 KVLKISYKRNNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFR 281
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
G +PA A+++ LE A++ +YGV LH AKD + + + L V G+L+++++ +IN F+W
Sbjct: 169 GMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWP 228
Query: 61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ P + ++ + F N K WK CVE+H FFR
Sbjct: 229 KVLKISYKRNNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFR 281
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%)
Query: 3 SPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAXX 62
+PA ADL LE A++ +YGV LH AKD + + + L V G+LV++++ +IN F W
Sbjct: 186 TPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKV 245
Query: 63 XXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ P Y+ + F + K WK CVE+H FFR
Sbjct: 246 LKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
+PA ADL LE A++ +YGV LH AKD + + + L V G+LV++++ +IN F W
Sbjct: 167 SMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWP 226
Query: 61 XXXXXXXXXXXXXXXLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ P Y+ + F + K WK CVE+H FFR
Sbjct: 227 KVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 279
>pdb|1BQG|A Chain A, The Structure Of The D-Glucarate Dehydratase Protein
From Pseudomonas Putida
Length = 451
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 23 VKLHPAKDHDNILLNLSVAH 42
+K+ P HD++LLNLS AH
Sbjct: 19 LKVVPVAGHDSMLLNLSGAH 38
>pdb|4FGP|A Chain A, Legionella Pneumophila Lapg (Egta-Treated)
pdb|4FGP|B Chain B, Legionella Pneumophila Lapg (Egta-Treated)
pdb|4FGQ|A Chain A, Legionella Pneumophila Lapg
pdb|4FGQ|B Chain B, Legionella Pneumophila Lapg
Length = 193
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 83 YYKDIVEFLFDNRNDCKNF 101
Y+K VEF+ D DC++F
Sbjct: 71 YWKSPVEFIVDGGGDCEDF 89
>pdb|4FGO|A Chain A, Legionella Pneumophila Lapg (Calcium-Bound)
Length = 193
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 83 YYKDIVEFLFDNRNDCKNF 101
Y+K VEF+ D DC++F
Sbjct: 71 YWKSPVEFIVDGGGDCEDF 89
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 99 KNFWKKCVENHGFFRCSAVKNTPRQRTRVL 128
K+ WK VE +G F C +N P R+
Sbjct: 161 KHLWKPAVEAYGEFLCXFEENYPETLKRLF 190
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 99 KNFWKKCVENHGFFRCSAVKNTPRQRTRVL 128
K+ WK VE +G F C +N P R+
Sbjct: 161 KHLWKPAVEAYGEFLCMFEENYPETLKRLF 190
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 99 KNFWKKCVENHGFFRCSAVKNTPRQRTRVL 128
K+ WK VE +G F C +N P R+
Sbjct: 161 KHLWKPAVEAYGEFLCMFEENYPETLKRLF 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,831,556
Number of Sequences: 62578
Number of extensions: 131501
Number of successful extensions: 206
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)