Query psy10562
Match_columns 135
No_of_seqs 121 out of 458
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:34:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 1.2E-41 2.5E-46 284.0 11.3 135 1-135 178-314 (616)
2 KOG3527|consensus 100.0 1.1E-35 2.3E-40 255.9 7.9 133 1-135 198-330 (975)
3 cd00836 FERM_C FERM_C domain. 100.0 6.4E-34 1.4E-38 190.6 10.8 92 20-113 1-92 (92)
4 PF09380 FERM_C: FERM C-termin 100.0 5.1E-29 1.1E-33 165.9 9.3 87 30-119 1-89 (90)
5 KOG0792|consensus 100.0 1.2E-29 2.6E-34 222.2 6.7 135 1-135 198-338 (1144)
6 KOG3531|consensus 99.9 2.3E-24 5E-29 185.7 -5.0 134 1-135 205-338 (1036)
7 KOG3529|consensus 99.7 6.1E-19 1.3E-23 150.7 2.8 114 1-118 190-306 (596)
8 KOG4371|consensus 99.0 1.3E-10 2.7E-15 103.4 3.0 112 1-115 693-819 (1332)
9 KOG0248|consensus 97.1 0.00064 1.4E-08 59.6 4.0 106 1-106 777-893 (936)
10 KOG3727|consensus 96.2 0.011 2.3E-07 51.0 5.6 97 2-105 533-634 (664)
11 PF10480 ICAP-1_inte_bdg: Beta 94.2 0.92 2E-05 34.3 9.8 93 7-106 87-188 (200)
12 KOG3527|consensus 91.6 0.079 1.7E-06 47.8 1.1 117 1-117 554-674 (975)
13 KOG4261|consensus 89.4 0.13 2.8E-06 46.1 0.5 43 1-43 286-333 (1003)
14 KOG3531|consensus 88.1 0.19 4E-06 45.5 0.5 73 1-74 346-418 (1036)
15 PF14317 YcxB: YcxB-like prote 87.0 1.8 3.9E-05 25.3 4.4 38 41-79 2-39 (62)
16 KOG3784|consensus 85.9 1.6 3.4E-05 36.5 4.8 58 7-64 246-311 (407)
17 PF14470 bPH_3: Bacterial PH d 84.9 7.9 0.00017 24.7 9.1 67 32-105 20-94 (96)
18 cd00934 PTB Phosphotyrosine-bi 81.8 13 0.00027 24.8 11.4 70 31-103 39-113 (123)
19 PF10756 bPH_6: Bacterial PH d 77.2 3.1 6.7E-05 26.0 2.8 38 38-76 4-41 (73)
20 PF00640 PID: Phosphotyrosine 73.9 25 0.00054 23.9 9.7 64 30-94 48-117 (140)
21 KOG3552|consensus 58.9 6.7 0.00015 36.5 2.0 47 2-48 380-430 (1298)
22 KOG0817|consensus 58.5 8.4 0.00018 27.7 2.1 25 1-25 67-92 (142)
23 cd01273 CED-6 CED-6 Phosphotyr 54.8 32 0.00069 24.3 4.7 32 33-67 54-87 (142)
24 PF08381 BRX: Transcription fa 52.8 15 0.00032 22.6 2.3 31 29-73 9-39 (59)
25 smart00462 PTB Phosphotyrosine 50.7 75 0.0016 21.4 10.6 75 31-106 41-122 (134)
26 cd01214 CG8312 CG8312 Phosphot 50.6 90 0.0019 22.2 8.5 70 32-104 40-117 (133)
27 cd08356 Glo_EDI_BRP_like_17 Th 47.4 46 0.001 21.8 4.3 21 19-39 92-112 (113)
28 cd01274 AIDA-1b AIDA-1b Phosph 46.7 98 0.0021 21.6 9.3 68 31-103 38-113 (127)
29 PF06115 DUF956: Domain of unk 46.6 99 0.0021 21.6 6.6 60 40-108 29-97 (118)
30 cd02407 PTH2_family Peptidyl-t 44.3 32 0.00069 23.7 3.2 36 8-43 59-100 (115)
31 KOG4371|consensus 43.3 2.8 6E-05 39.2 -2.8 102 1-112 279-393 (1332)
32 PF14504 CAP_assoc_N: CAP-asso 42.4 1.2E+02 0.0026 21.5 6.0 79 1-80 2-98 (141)
33 cd01217 CG12581 CG12581 Phosph 41.8 1.4E+02 0.003 21.9 8.6 34 30-63 39-76 (158)
34 PF14593 PH_3: PH domain; PDB: 41.1 1E+02 0.0022 20.9 5.2 45 55-108 52-97 (104)
35 COG3077 RelB DNA-damage-induci 40.4 28 0.00061 23.1 2.3 17 1-17 27-43 (88)
36 COG4687 Uncharacterized protei 39.8 81 0.0018 22.0 4.5 60 40-108 29-96 (122)
37 cd01268 Numb Numb Phosphotyros 36.2 73 0.0016 22.7 4.1 31 33-63 49-81 (138)
38 smart00449 SPRY Domain in SPla 35.0 54 0.0012 21.5 3.2 25 22-46 2-26 (122)
39 PF14719 PID_2: Phosphotyrosin 33.1 2.1E+02 0.0045 21.4 9.6 70 32-104 37-114 (182)
40 PF02174 IRS: PTB domain (IRS- 32.0 1.5E+02 0.0033 19.5 9.7 60 34-95 22-84 (100)
41 PRK11235 bifunctional antitoxi 31.2 48 0.0011 21.4 2.3 19 1-19 24-42 (80)
42 PF04221 RelB: RelB antitoxin; 30.3 46 0.00099 21.3 2.1 17 1-17 24-40 (83)
43 COG0753 KatE Catalase [Inorgan 29.4 54 0.0012 28.3 2.8 66 15-80 198-276 (496)
44 PF03738 GSP_synth: Glutathion 27.7 1E+02 0.0023 20.0 3.5 54 6-66 14-71 (97)
45 cd00824 PTBI IRS-like phosphot 26.2 2.1E+02 0.0046 19.3 8.0 69 34-104 21-93 (104)
46 cd01215 Dab Disabled (Dab) Pho 25.6 2.6E+02 0.0055 20.0 6.4 22 31-52 50-71 (139)
47 TIGR02384 RelB_DinJ addiction 25.4 71 0.0015 20.6 2.3 17 1-17 25-41 (83)
48 PF01981 PTH2: Peptidyl-tRNA h 24.1 95 0.0021 21.0 2.9 34 9-42 61-100 (116)
49 COG0019 LysA Diaminopimelate d 23.3 83 0.0018 26.2 2.9 28 1-28 170-199 (394)
50 PF07205 DUF1413: Domain of un 22.5 2E+02 0.0042 17.6 4.1 31 5-36 37-67 (70)
51 PRK04322 peptidyl-tRNA hydrola 21.9 1.3E+02 0.0028 20.6 3.2 33 10-42 59-97 (113)
52 PF08269 Cache_2: Cache domain 21.9 70 0.0015 20.4 1.8 35 2-36 35-69 (95)
53 TIGR00283 arch_pth2 peptidyl-t 21.2 1.4E+02 0.0031 20.4 3.3 34 10-43 61-100 (115)
54 cd01212 JIP JNK-interacting pr 20.6 1.5E+02 0.0032 21.3 3.4 36 33-68 44-84 (148)
No 1
>KOG3530|consensus
Probab=100.00 E-value=1.2e-41 Score=283.98 Aligned_cols=135 Identities=39% Similarity=0.682 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG 80 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~ 80 (135)
|++|++||++||++|++|||||||+|+|++++|++.+||++|.||.||.+..++..|.|++|.||.|++|+|.+++..++
T Consensus 178 GqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f~WpkI~KvdFk~kk~~L~v~edd 257 (616)
T KOG3530|consen 178 GQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLFFWPKITKVDFKGKKFTLVVSEDD 257 (616)
T ss_pred CCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEEecchheEeeccCcEEEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CC--cceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562 81 YG--YYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR 135 (135)
Q Consensus 81 ~~--~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r 135 (135)
.+ .++++++|.++++.+||+|||||||||+|||+..+...+..+..+|+.||+||
T Consensus 258 ~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~~~~s~~~~ffrlGSrfR 314 (616)
T KOG3530|consen 258 DQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPVSSQSARSDFFRLGSRFR 314 (616)
T ss_pred ccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCccccccccchhhhcceee
Confidence 43 35689999999999999999999999999999888655556778999999998
No 2
>KOG3527|consensus
Probab=100.00 E-value=1.1e-35 Score=255.91 Aligned_cols=133 Identities=39% Similarity=0.802 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG 80 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~ 80 (135)
||+|++||+.||..|.+|.||||++|++||++|++|.||||++|+.||.+..+++.|.|+.|.|++|++..|.|.+++..
T Consensus 198 g~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lrinrfawPKilKisykR~~FyiKirPge 277 (975)
T KOG3527|consen 198 GMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGE 277 (975)
T ss_pred CCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhhccccCchhhhhccceeeeEEEecCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562 81 YGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR 135 (135)
Q Consensus 81 ~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r 135 (135)
.+..+.++.|++++.++||+||+.|+|||+|||+..|.++|+. .+.-.||+||
T Consensus 278 ~eq~EstigFklpnhraakrlwk~cvEHhtffrl~~Pe~~pk~--~f~~~gs~~r 330 (975)
T KOG3527|consen 278 FEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRLVSPEPPPKS--KFLVLGSKFR 330 (975)
T ss_pred cccccccccccccchhhHHhhhHhhhhccceeeeccCCCCccc--ccccccccee
Confidence 8878899999999999999999999999999999999998885 3446888887
No 3
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=100.00 E-value=6.4e-34 Score=190.60 Aligned_cols=92 Identities=47% Similarity=0.851 Sum_probs=87.1
Q ss_pred CccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecChHHHH
Q psy10562 20 LYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCK 99 (135)
Q Consensus 20 ~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak 99 (135)
+||||+|+|||++|++++|||++.||.||+++.++..|+|++|.+|+|++|+|.|++.+.+. .+.++.|+++++++||
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~~f~W~~I~~isf~~k~F~i~~~~~~~--~~~~~~f~~~s~~~~k 78 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPINEFPWPEIRKISFKRKKFTLKVRDKDG--QEITLSFQTPSHRACK 78 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEEEEEcccceEEEEcCCEEEEEEecCcC--ceeeEEEECCCHHHHH
Confidence 79999999999999999999999999999998899999999999999999999999998752 3578999999999999
Q ss_pred HHHHHHhhcccccc
Q psy10562 100 NFWKKCVENHGFFR 113 (135)
Q Consensus 100 ~lw~~~ve~H~Ff~ 113 (135)
+||++|+|||+|||
T Consensus 79 ~lwk~~ve~H~Ffr 92 (92)
T cd00836 79 YLWKLCVEQHAFFR 92 (92)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999999997
No 4
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=99.96 E-value=5.1e-29 Score=165.93 Aligned_cols=87 Identities=33% Similarity=0.643 Sum_probs=78.5
Q ss_pred cCCCCeEEEEEeCCeeEEeeCCcee--eeeecccccceeeeccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhh
Q psy10562 30 DHDNILLNLSVAHMGILVFQNQTKI--NTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVE 107 (135)
Q Consensus 30 d~~~~~~~lGvs~~GI~iy~~~~~~--~~f~W~~I~~l~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve 107 (135)
|++|.+++|||+++||.||+++.++ ..|+|++|.+|+|++|+|.|++.+.. ...++.|+++++++||+||++|++
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~~~---~~~~~~f~~~~~~~aK~lw~~cv~ 77 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRDES---KEIKLKFYTPSPKAAKYLWKLCVE 77 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESSTS---SSEEEEEE-SSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEeecc---cceEEEEEECCHHHHHHHHHHHHH
Confidence 7899999999999999999999988 99999999999999999999998722 247899999999999999999999
Q ss_pred cccccccccccc
Q psy10562 108 NHGFFRCSAVKN 119 (135)
Q Consensus 108 ~H~Ff~~~~~~~ 119 (135)
||+||++.++++
T Consensus 78 ~H~Ff~~~~~~~ 89 (90)
T PF09380_consen 78 QHTFFRLRRPPK 89 (90)
T ss_dssp HHHHHHHHTS-E
T ss_pred HHHHhcccCCCC
Confidence 999999977653
No 5
>KOG0792|consensus
Probab=99.96 E-value=1.2e-29 Score=222.21 Aligned_cols=135 Identities=35% Similarity=0.502 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEee-CCceeeeeecccccceeeeccEEEEEEecC
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQ-NQTKINTFSWAKIRKISFKRKRFLIKLHPE 79 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~-~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~ 79 (135)
|++|+|||++||++|++||+||+|+|++||..|++|.|||+..||.|+. ++.+...|+|.+|.+++|+++.|.|++++.
T Consensus 198 G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~ 277 (1144)
T KOG0792|consen 198 GLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNK 277 (1144)
T ss_pred ccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhc
Confidence 7899999999999999999999999999999999999999999999996 677789999999999999999999999988
Q ss_pred CCCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCc-----ccceeeecCccCC
Q psy10562 80 GYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPR-----QRTRVLSRGSSFR 135 (135)
Q Consensus 80 ~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~-----~~~~~~~~g~~~r 135 (135)
+++..+..+.|.+.+.+.||+||++|++||.||++..+...|. .+...++++|.+|
T Consensus 278 ~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~~~~~lp~~~~~~~~~~~~~~ss~~~ 338 (1144)
T KOG0792|consen 278 DSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLKKPCVLPSSSKSPIRRVQSSRSSLPE 338 (1144)
T ss_pred cccchhhhheeeecccchhHHHHHHHHHHhhHhhccccccCCcccCCCccccccccccccc
Confidence 8766667789999999999999999999999999987743332 1112566666654
No 6
>KOG3531|consensus
Probab=99.87 E-value=2.3e-24 Score=185.72 Aligned_cols=134 Identities=63% Similarity=1.151 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecCC
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEG 80 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~~ 80 (135)
|++|+|+.++-|..|.++++||+++|+++|-+|..+-+.+...||.|+++-.++..|.|.+|.+++|++|.|.|.+++..
T Consensus 205 g~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~ 284 (1036)
T KOG3531|consen 205 GQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDS 284 (1036)
T ss_pred ccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcceeeEEEEecChHHHHHHHHHHhhccccccccccccCCcccceeeecCccCC
Q psy10562 81 YGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVKNTPRQRTRVLSRGSSFR 135 (135)
Q Consensus 81 ~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~~~~~~~~~~~~~g~~~r 135 (135)
.++.+.++.|.+.+...||..|+-|+|+|.|||+...+.+ +.+..+|++||+||
T Consensus 285 ~g~~qdt~ef~~~~rd~ck~fwk~cve~h~ffr~~~~~~~-k~k~~~~S~gssfr 338 (1036)
T KOG3531|consen 285 YGYYKDTLEFLMASRDECKNFWKICVEHHAFFRLVEEPKP-KPKTVFFSKGSSFR 338 (1036)
T ss_pred ccchhhhHHHHHHhHHHHHHHHhccccccchhhhhcccCC-CCCceeecccchhh
Confidence 7777789999999999999999999999999999887776 76778999999998
No 7
>KOG3529|consensus
Probab=99.74 E-value=6.1e-19 Score=150.65 Aligned_cols=114 Identities=27% Similarity=0.431 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee---eeeecccccceeeeccEEEEEEe
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI---NTFSWAKIRKISFKRKRFLIKLH 77 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~---~~f~W~~I~~l~f~~k~F~I~~~ 77 (135)
||+.++|+++||++|+.||+|||++|+++++.|+++||||+..|+.+|...+++ -.|+|++|.+|+|.+|+|.|.+.
T Consensus 190 ~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~i 269 (596)
T KOG3529|consen 190 GMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPI 269 (596)
T ss_pred hhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCC
Confidence 789999999999999999999999999999999999999999999999776653 58999999999999999999998
Q ss_pred cCCCCcceeeEEEEecChHHHHHHHHHHhhccccccccccc
Q psy10562 78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAVK 118 (135)
Q Consensus 78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~~ 118 (135)
+... ..+.|+-+.....+.+.+.|.+.|..|+.+..+
T Consensus 270 d~~~----~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~ 306 (596)
T KOG3529|consen 270 DKKA----SDFSFYAPRLRINKRILDLCMGNHELYMRRRKP 306 (596)
T ss_pred Cccc----Ccccccccccccchhhhhhhhccchhhhhcccc
Confidence 7642 467777788889999999999999999876554
No 8
>KOG4371|consensus
Probab=99.02 E-value=1.3e-10 Score=103.40 Aligned_cols=112 Identities=18% Similarity=0.321 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEee-ec----------CCCCeEEEEEeCCeeEEeeCCc----eeeeeecccccce
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPA-KD----------HDNILLNLSVAHMGILVFQNQT----KINTFSWAKIRKI 65 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~v-kd----------~~~~~~~lGvs~~GI~iy~~~~----~~~~f~W~~I~~l 65 (135)
|.+..||...|+++++.+++|+++++++ ++ ..+.+.++|++++||.||.+.. ++..|||..|..+
T Consensus 693 ~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~l 772 (1332)
T KOG4371|consen 693 GTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQTL 772 (1332)
T ss_pred hcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCCce
Confidence 3567899999999999999999999987 33 3577899999999999996643 4679999999999
Q ss_pred eeeccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhcccccccc
Q psy10562 66 SFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCS 115 (135)
Q Consensus 66 ~f~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~ 115 (135)
.|.+++|.|...+.++ ...+.|+++.+..+.++++++..+|.||+..
T Consensus 773 qFd~k~f~Is~~g~p~---~~i~~~yt~hh~~S~~~L~~~~~thR~ym~~ 819 (1332)
T KOG4371|consen 773 QFDKKRFVISAVGAPD---EQIETFYTDHHSKSSYFLRFAASTHRWYMKM 819 (1332)
T ss_pred eecCCCceeecCCCCC---cceEEeeccCCcchhHHHHHHHHhhHHHhhc
Confidence 9999999999887765 3567899999999999999999999999876
No 9
>KOG0248|consensus
Probab=97.05 E-value=0.00064 Score=59.58 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeec-----CCCCeEEEEEeCCeeEEeeCC-c-eeeeeecccccceeeeccEEE
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQ-T-KINTFSWAKIRKISFKRKRFL 73 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd-----~~~~~~~lGvs~~GI~iy~~~-~-~~~~f~W~~I~~l~f~~k~F~ 73 (135)
|||+.|...-||..|++-|.+|..+|.|+- +.+.=+||+|.-.|+.+...+ . -+..|+++.+...-=-...|-
T Consensus 777 G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYsSl~TFGG~qDDFM 856 (936)
T KOG0248|consen 777 GMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYSSLSTFGGFQDDFM 856 (936)
T ss_pred CCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccceeEEEEeeccccccccCcccceE
Confidence 899999999999999999999999998863 467889999999999997433 3 467899999998877777898
Q ss_pred EEEecCCCC----cceeeEEEEecChHHHHHHHHHHh
Q psy10562 74 IKLHPEGYG----YYKDIVEFLFDNRNDCKNFWKKCV 106 (135)
Q Consensus 74 I~~~~~~~~----~~~~~~~f~~~s~~~ak~lw~~~v 106 (135)
++++..++. ...+++.|.|.-++.+...+-++.
T Consensus 857 lVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~Tl~~AS 893 (936)
T KOG0248|consen 857 LVIIRTPGKHPDEAPKEKLTFSMAKPKIEELTLHLAS 893 (936)
T ss_pred EEEecCCCCCCCccchhhhhhhhccchHHHHHHHHHH
Confidence 888765442 235678899999888777666653
No 10
>KOG3727|consensus
Probab=96.21 E-value=0.011 Score=50.99 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHhhccCCccceeEeee-cCCCCeEEEEEeCCeeEEe--eCCceeeeeeccccc--ceeeeccEEEEEE
Q psy10562 2 QSPAAADLNLLETARRCELYGVKLHPAK-DHDNILLNLSVAHMGILVF--QNQTKINTFSWAKIR--KISFKRKRFLIKL 76 (135)
Q Consensus 2 ~s~~eAe~~fL~~a~~L~~YGv~~~~vk-d~~~~~~~lGvs~~GI~iy--~~~~~~~~f~W~~I~--~l~f~~k~F~I~~ 76 (135)
|+-.||.+.||+.=|.||.+|+.+|=|+ +..-.+=.|||..+-+.=. ..+..+..++++++. |+...=|...|+.
T Consensus 533 lsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF 612 (664)
T KOG3727|consen 533 LSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEF 612 (664)
T ss_pred hhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceeeEEEEEe
Confidence 6889999999999999999999999885 2233344588887655543 334456666666666 4566666777777
Q ss_pred ecCCCCcceeeEEEEecChHHHHHHHHHH
Q psy10562 77 HPEGYGYYKDIVEFLFDNRNDCKNFWKKC 105 (135)
Q Consensus 77 ~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ 105 (135)
.+. ..+.|.|-|. .||-+-..+
T Consensus 613 ~de------v~iaFsc~SA-DCKVVHEfI 634 (664)
T KOG3727|consen 613 EDE------VNIAFSCLSA-DCKVVHEFI 634 (664)
T ss_pred ccc------ceEEEEeecc-cchhhhhhc
Confidence 653 4578988887 576664433
No 11
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=94.23 E-value=0.92 Score=34.27 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCce--eeeeecccccc-eeeeccE------EEEEEe
Q psy10562 7 ADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK--INTFSWAKIRK-ISFKRKR------FLIKLH 77 (135)
Q Consensus 7 Ae~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~-l~f~~k~------F~I~~~ 77 (135)
-.+++|+.||+. |--++- ....++.++|+-.||-|-..+++ ..++|--.|.. ++|.+-- |.+++.
T Consensus 87 ~lI~~ID~aQq~---GkLP~v---~~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~~ 160 (200)
T PF10480_consen 87 ELINYIDSAQQD---GKLPFV---PSDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKVG 160 (200)
T ss_pred HHHHHHHHHhhc---CcCCCC---CCCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEcc
Confidence 346788888864 555553 23358889999999999866554 47889889984 5565442 233433
Q ss_pred cCCCCcceeeEEEEecChHHHHHHHHHHh
Q psy10562 78 PEGYGYYKDIVEFLFDNRNDCKNFWKKCV 106 (135)
Q Consensus 78 ~~~~~~~~~~~~f~~~s~~~ak~lw~~~v 106 (135)
+...+ .-..+.|.|.+...|.-|.++..
T Consensus 161 ~~~~e-~y~l~v~Qcss~~qA~~ICk~l~ 188 (200)
T PF10480_consen 161 DERQE-EYQLWVYQCSSDEQAQEICKVLG 188 (200)
T ss_pred CCCcc-eEEEEEEEcCCHHHHHHHHHHHH
Confidence 33221 12567899999999999888754
No 12
>KOG3527|consensus
Probab=91.60 E-value=0.079 Score=47.85 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEee-ec--CCCCeEEEEE-eCCeeEEeeCCceeeeeecccccceeeeccEEEEEE
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPA-KD--HDNILLNLSV-AHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKL 76 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~v-kd--~~~~~~~lGv-s~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~ 76 (135)
|.+.+++|-.+..-+....+||.+.+.. .| ..+.++..+- ...+|-+|+.......+.|..|.+.++..-.|.+.+
T Consensus 554 s~s~setee~~~~r~~~k~~~Gi~~~~~e~~~~k~~~~~d~~~~~ee~ipeaEpv~~t~s~v~~ni~~ksy~~~~l~~dv 633 (975)
T KOG3527|consen 554 SQSESETEEQFRDRCKHKALYGIHLFEAESDKDKEPEPVDRAEVGEEDIPEAEPVQKTHSFVWQNIITKSYREGYLSIDV 633 (975)
T ss_pred cccccchhhhhhcccccccccccchhhhhcccccCcccccchhcccccccccceeccccccccccccccccccccceecc
Confidence 4577899999999999999999999865 22 3333333111 188999999888889999999999999999999998
Q ss_pred ecCCCCcceeeEEEEecChHHHHHHHHHHhhcccccccccc
Q psy10562 77 HPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAV 117 (135)
Q Consensus 77 ~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff~~~~~ 117 (135)
.....+..+..+.+.-+-.-..+.-|++...+|+|+...++
T Consensus 634 ~~~AvEk~e~p~v~te~v~v~~e~~~k~~~~~~t~~pi~qt 674 (975)
T KOG3527|consen 634 KAGAVEKNEKPLVKTEPVTVLDERNAKSAEIHTTFVPIVQT 674 (975)
T ss_pred Ccchhhcccccceeccceehhhhcccccccccccccccccc
Confidence 74333222234555566677888899999999999987554
No 13
>KOG4261|consensus
Probab=89.42 E-value=0.13 Score=46.14 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecC-----CCCeEEEEEeCC
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDH-----DNILLNLSVAHM 43 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~-----~~~~~~lGvs~~ 43 (135)
||+.-+|...|.+.|..|++|||.+|-||.+ .+.+-+|||+-.
T Consensus 286 ~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~ 333 (1003)
T KOG4261|consen 286 GMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKE 333 (1003)
T ss_pred chhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHH
Confidence 5788899999999999999999999999864 467888888764
No 14
>KOG3531|consensus
Probab=88.06 E-value=0.19 Score=45.52 Aligned_cols=73 Identities=3% Similarity=-0.271 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEEE
Q psy10562 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLI 74 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I 74 (135)
|+.+.+||.+-++++.+-+.||.++|+.++-++....+..-+.|+.. .+-.+++-+.|.++.++.++++-+..
T Consensus 346 q~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~~~~-~sl~~~n~~~~~~~~~~~~ss~P~l~ 418 (1036)
T KOG3531|consen 346 QLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQHRN-GSLYEANGTDSYNKHQNVHSSEPHIA 418 (1036)
T ss_pred ccchhhhhcccccchhhcccccccccchhhccCCchhhhhccccccc-cceeecccccCcccccccccCCceec
Confidence 57899999999999999999999999999999998889999999998 44456789999999999999998776
No 15
>PF14317 YcxB: YcxB-like protein
Probab=87.01 E-value=1.8 Score=25.25 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=30.0
Q ss_pred eCCeeEEeeCCceeeeeecccccceeeeccEEEEEEecC
Q psy10562 41 AHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPE 79 (135)
Q Consensus 41 s~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~~~~ 79 (135)
...||.+..+. ....++|++|.++.-.+..|.|.+.+.
T Consensus 2 ~~~gi~~~~~~-~~~~~~w~~i~~v~e~~~~~~l~~~~~ 39 (62)
T PF14317_consen 2 DEDGIIIESGN-GSSRIPWSDIKKVVETKDYFYLYLGKN 39 (62)
T ss_pred CCCEEEEEECC-eEEEEEchheEEEEEeCCEEEEEECCC
Confidence 46788886533 446899999999999999999987543
No 16
>KOG3784|consensus
Probab=85.92 E-value=1.6 Score=36.47 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=45.2
Q ss_pred HHHHHHHHhhccCCccceeEee--ec--CCCCeEEEEEeCCeeEEe--eCCc--eeeeeecccccc
Q psy10562 7 ADLNLLETARRCELYGVKLHPA--KD--HDNILLNLSVAHMGILVF--QNQT--KINTFSWAKIRK 64 (135)
Q Consensus 7 Ae~~fL~~a~~L~~YGv~~~~v--kd--~~~~~~~lGvs~~GI~iy--~~~~--~~~~f~W~~I~~ 64 (135)
-...||+.|++|++||...|+- =| +.|.++.+-++.+=+..- .++. ....|.|++|..
T Consensus 246 ~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trmr~ 311 (407)
T KOG3784|consen 246 SMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRMRC 311 (407)
T ss_pred hHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeeeEe
Confidence 3468999999999999999974 34 578899888888888774 3332 456899999874
No 17
>PF14470 bPH_3: Bacterial PH domain
Probab=84.89 E-value=7.9 Score=24.71 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=47.8
Q ss_pred CCCeEEEEEeCCeeEEeeCC----ceeeeeecccccceeeec----cEEEEEEecCCCCcceeeEEEEecChHHHHHHHH
Q psy10562 32 DNILLNLSVAHMGILVFQNQ----TKINTFSWAKIRKISFKR----KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWK 103 (135)
Q Consensus 32 ~~~~~~lGvs~~GI~iy~~~----~~~~~f~W~~I~~l~f~~----k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~ 103 (135)
......+.++.+=|.++... .....++|.+|..+++++ .++.|.. +. ..+.+..-+...++.+.+
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-~~------~~~~i~~i~k~~~~~~~~ 92 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-NG------EKIKIDNIQKGDVKEFYE 92 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE-CC------EEEEEEEcCHHHHHHHHH
Confidence 46677788999988888554 235899999999999997 5556665 21 466666556667777665
Q ss_pred HH
Q psy10562 104 KC 105 (135)
Q Consensus 104 ~~ 105 (135)
..
T Consensus 93 ~i 94 (96)
T PF14470_consen 93 YI 94 (96)
T ss_pred HH
Confidence 54
No 18
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=81.80 E-value=13 Score=24.76 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCCeEEEEEeCCeeEEeeCCc--eeeeeecccccceeee---ccEEEEEEecCCCCcceeeEEEEecChHHHHHHHH
Q psy10562 31 HDNILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFK---RKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWK 103 (135)
Q Consensus 31 ~~~~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~---~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~ 103 (135)
..+.++.|-|++.||.+..... .+..|+..+|.-..-. .+-|.+.++..... .-.-..|.|.+. |+.|-.
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~-~~~CHvF~c~~~--a~~i~~ 113 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSS-RFECHVFKCEKV--AEPIAL 113 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCC-cEEEEEEEeCch--HHHHHH
Confidence 5678999999999999986554 3566776666655554 56788777765431 123556888776 554433
No 19
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=77.22 E-value=3.1 Score=25.97 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=28.7
Q ss_pred EEEeCCeeEEeeCCceeeeeecccccceeeeccEEEEEE
Q psy10562 38 LSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKL 76 (135)
Q Consensus 38 lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~I~~ 76 (135)
+-+++.||.|-..- +...++|++|..+.+....-.+.+
T Consensus 4 v~v~~~Gl~vr~~~-rt~~vpW~~I~~v~~~~~~~~v~~ 41 (73)
T PF10756_consen 4 VEVDPDGLRVRNLF-RTRRVPWSEIAGVRFRRGRRWVRL 41 (73)
T ss_pred EEEcCCcEEEEcCc-eeEEEChHHeEEEEccCCceEEEE
Confidence 45788898875443 668999999999998887753333
No 20
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=73.93 E-value=25 Score=23.90 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=43.7
Q ss_pred cCCCCeEEEEEeCCeeEEeeCC--ceeeeeecccccceee----eccEEEEEEecCCCCcceeeEEEEecC
Q psy10562 30 DHDNILLNLSVAHMGILVFQNQ--TKINTFSWAKIRKISF----KRKRFLIKLHPEGYGYYKDIVEFLFDN 94 (135)
Q Consensus 30 d~~~~~~~lGvs~~GI~iy~~~--~~~~~f~W~~I~~l~f----~~k~F~I~~~~~~~~~~~~~~~f~~~s 94 (135)
...+.++.|.|+..||.|.... ..+..++=.+|.-.+. ..+.|.....+...+ .-....|.+.+
T Consensus 48 ~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~-~~~CHVF~~~~ 117 (140)
T PF00640_consen 48 KKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSS-RFYCHVFKCED 117 (140)
T ss_dssp TSTSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSS-CEEEEEEEESS
T ss_pred cccCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCC-ccccEeeeHhh
Confidence 3467899999999999998653 3456777666666666 455787755544332 12455788888
No 21
>KOG3552|consensus
Probab=58.91 E-value=6.7 Score=36.48 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhccCCccceeEeeecCCC---CeEEEEEeCC-eeEEe
Q psy10562 2 QSPAAADLNLLETARRCELYGVKLHPAKDHDN---ILLNLSVAHM-GILVF 48 (135)
Q Consensus 2 ~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~---~~~~lGvs~~-GI~iy 48 (135)
++..+|-++||++-..|+.||-..|.+.-..| ..+.|=|+++ ||..-
T Consensus 380 lt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLVgpryGiSqV 430 (1298)
T KOG3552|consen 380 LTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLLVGPRYGISQV 430 (1298)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEeccccchhHh
Confidence 46789999999999999999999999854433 6777778875 66653
No 22
>KOG0817|consensus
Probab=58.47 E-value=8.4 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHhhccC-Ccccee
Q psy10562 1 GQSPAAADLNLLETARRCE-LYGVKL 25 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~-~YGv~~ 25 (135)
||++++|+..|++.+++|. .|+-..
T Consensus 67 ~~s~~eA~~~Yv~~~~~l~~~~~~~~ 92 (142)
T KOG0817|consen 67 GMSKEEAMEAYVEKVEELIPKYGAEA 92 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 7999999999999998875 566553
No 23
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=54.83 E-value=32 Score=24.32 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCeEEEEEeCCeeEEeeCCce--eeeeecccccceee
Q psy10562 33 NILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISF 67 (135)
Q Consensus 33 ~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f 67 (135)
-..+.|=||+.||.|...... +..++ |.+|||
T Consensus 54 ~~~V~L~IS~~GI~v~d~~t~~~~~~~~---i~~ISf 87 (142)
T cd01273 54 LQKVEIRISIDGVIIAEPKTKAPMHTFP---LGRISF 87 (142)
T ss_pred CcEEEEEEECCeEEEEEcCCCcEEEEcC---cceEEE
Confidence 478999999999999865443 34444 555555
No 24
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=52.77 E-value=15 Score=22.56 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=23.6
Q ss_pred ecCCCCeEEEEEeCCeeEEeeCCceeeeeecccccceeeeccEEE
Q psy10562 29 KDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFL 73 (135)
Q Consensus 29 kd~~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f~~k~F~ 73 (135)
.++.|+-|+|.+.+.|... +..|.|++++|.
T Consensus 9 q~EpGVyiTl~~~p~G~~~--------------LkRVRFSR~~F~ 39 (59)
T PF08381_consen 9 QDEPGVYITLVSLPDGGND--------------LKRVRFSRERFS 39 (59)
T ss_pred eeCCeeEEEEEECCCCCee--------------EEEEEEhhhhcC
Confidence 5678888888888887654 667788888875
No 25
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=50.72 E-value=75 Score=21.37 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred CCCCeEEEEEeCCeeEEeeCCc--eeeeeecccccceeee---ccEEEEEEecCCCCcceeeEEEEecChH--HHHHHHH
Q psy10562 31 HDNILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFK---RKRFLIKLHPEGYGYYKDIVEFLFDNRN--DCKNFWK 103 (135)
Q Consensus 31 ~~~~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~---~k~F~I~~~~~~~~~~~~~~~f~~~s~~--~ak~lw~ 103 (135)
..+.++.|-|++.||.+..... .+..|+..+|.-.... .+-|....++.... .-.-..|.|++.. .|..|-+
T Consensus 41 ~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~-~~~CHvF~c~~~a~~i~~~i~~ 119 (134)
T smart00462 41 KEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSS-RFACHVFRCEKAAEDIALAIGQ 119 (134)
T ss_pred CCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCC-eEEEEEEEcCchHHHHHHHHHH
Confidence 4678999999999999985543 4677888888766666 55666666654431 1234567777643 4444444
Q ss_pred HHh
Q psy10562 104 KCV 106 (135)
Q Consensus 104 ~~v 106 (135)
.+.
T Consensus 120 aF~ 122 (134)
T smart00462 120 AFQ 122 (134)
T ss_pred HHH
Confidence 443
No 26
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=50.55 E-value=90 Score=22.24 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCCeEEEEEeCCeeEEeeCCceeeeeecccccceee------eccEEEEEEecCCCC--cceeeEEEEecChHHHHHHHH
Q psy10562 32 DNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISF------KRKRFLIKLHPEGYG--YYKDIVEFLFDNRNDCKNFWK 103 (135)
Q Consensus 32 ~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f------~~k~F~I~~~~~~~~--~~~~~~~f~~~s~~~ak~lw~ 103 (135)
....+.|=|+++||.+......+..| .|.+|+| ..+-|.-..+..... ..-+--.|-|++.+.||.+-.
T Consensus 40 ~~~km~L~Vsp~GI~~~~~~~~~~~~---~i~RIsYCsad~~~p~VFa~I~r~~~~~~~~~l~CHAvlC~k~~~A~aial 116 (133)
T cd01214 40 QDTKMKLTVSASGLKAVTAQRGLTEY---WAHRITYCVAPARYPKVFCWIYRHEGKHLKVELRCHAVLCSKPEKAQAIAL 116 (133)
T ss_pred ccceEEEEEcCCceEEEeccccceEE---EEeeeeeecCCcCCCcEEEEEEeecccccCcceEEEEEEeCCHHHHHHHHH
Confidence 45678899999999997555434444 3455554 346676555543221 112344678999999998754
Q ss_pred H
Q psy10562 104 K 104 (135)
Q Consensus 104 ~ 104 (135)
.
T Consensus 117 ~ 117 (133)
T cd01214 117 L 117 (133)
T ss_pred H
Confidence 4
No 27
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=47.36 E-value=46 Score=21.76 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=17.5
Q ss_pred CCccceeEeeecCCCCeEEEE
Q psy10562 19 ELYGVKLHPAKDHDNILLNLS 39 (135)
Q Consensus 19 ~~YGv~~~~vkd~~~~~~~lG 39 (135)
+.+|...+.++|++|+.|.+|
T Consensus 92 ~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 92 QPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred cCCCcEEEEEECCCccEEEee
Confidence 358888888999999988876
No 28
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=46.67 E-value=98 Score=21.56 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=42.4
Q ss_pred CCCCeEEEEEeCCeeEEeeCCce--eeeeecccccceeee---c---cEEEEEEecCCCCcceeeEEEEecChHHHHHHH
Q psy10562 31 HDNILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFK---R---KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFW 102 (135)
Q Consensus 31 ~~~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~---~---k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw 102 (135)
+....+.|-||..||.+...... +..+ .|.+|+|- . +.|.-..++.. + .-.-.+|.+.+.+.|..+-
T Consensus 38 ~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~---~i~~ISf~~~D~~d~~~FayIakd~~-~-~~~CHvF~~~~~~~A~~I~ 112 (127)
T cd01274 38 ETIPRVTLDLTCNGVKFIDETFKTLIDGH---GIYNIRCVCQDREDLNFFAYITKDTE-N-RHYCHVFCVLTSGLAAEII 112 (127)
T ss_pred CCCCEEEEEEeCCeEEEEECCCCeEEEEe---eeeEEEEEecCCCCceEEEEEeeCCC-C-CEEEEEEEcCCHHHHHHHH
Confidence 34678999999999999866543 3444 46666663 2 35665555543 1 1233467777777676654
Q ss_pred H
Q psy10562 103 K 103 (135)
Q Consensus 103 ~ 103 (135)
.
T Consensus 113 ~ 113 (127)
T cd01274 113 T 113 (127)
T ss_pred H
Confidence 3
No 29
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=46.60 E-value=99 Score=21.60 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=35.5
Q ss_pred EeCCeeEEeeCCcee--eeeecccccc----eeeeccE---EEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhc
Q psy10562 40 VAHMGILVFQNQTKI--NTFSWAKIRK----ISFKRKR---FLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVEN 108 (135)
Q Consensus 40 vs~~GI~iy~~~~~~--~~f~W~~I~~----l~f~~k~---F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~ 108 (135)
|+-+|..-|.+.+.. -.+||.+|.. +.|++|. |.|.+...+ ++.|-.. .++.+++.+.++
T Consensus 29 iGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~G------~f~Fssk---d~k~~Lk~~r~y 97 (118)
T PF06115_consen 29 IGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKNG------KFTFSSK---DSKKVLKAIRKY 97 (118)
T ss_pred EcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCCC------EEEEEEC---ChHHHHHHHHHh
Confidence 445566666554432 5799999875 5666553 677776532 4444443 445566666554
No 30
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=44.34 E-value=32 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHhhccCCccceeEeeec------CCCCeEEEEEeCC
Q psy10562 8 DLNLLETARRCELYGVKLHPAKD------HDNILLNLSVAHM 43 (135)
Q Consensus 8 e~~fL~~a~~L~~YGv~~~~vkd------~~~~~~~lGvs~~ 43 (135)
|..+++.++++..=|+..+-+.| ++|+...||++|.
T Consensus 59 ~~~l~~l~~~a~~~gl~~~~v~DAG~Tqi~~gt~TvlaigP~ 100 (115)
T cd02407 59 EEELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPA 100 (115)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCcccCCCCceEEEECCC
Confidence 34567777777778999999998 5788888888764
No 31
>KOG4371|consensus
Probab=43.30 E-value=2.8 Score=39.20 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHhhccC------CccceeEeeecCCCCeEEEEEeCCeeEEeeCC-------ceeeeeecccccceee
Q psy10562 1 GQSPAAADLNLLETARRCE------LYGVKLHPAKDHDNILLNLSVAHMGILVFQNQ-------TKINTFSWAKIRKISF 67 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~------~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~-------~~~~~f~W~~I~~l~f 67 (135)
||-..|+++.||++|+.+- .||.+.-.+-...+. -+--+...|+.+-... .....+.|+ .++++
T Consensus 279 g~~~~e~~Ls~~~~A~~~~~~~~a~~~~s~~sk~e~~~~~-a~~~~y~~~~~~~~~e~~~v~s~p~~t~~~~p--~kl~~ 355 (1332)
T KOG4371|consen 279 GAVHLETGLSPLEEAQRALRANRARHKPSNVSKAEEAKLA-ARQRYYNASDIRREEEEEVVESDPAVTVPVLP--KKLEV 355 (1332)
T ss_pred cchhhhccccHHHHHHHHHHhhhceecccccchhhhhhhh-HHHHHHhHHHhhhcchheecccCccccccCCC--CCcch
Confidence 5667899999999998753 244443221111111 1112233344433221 123579999 89999
Q ss_pred eccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhccccc
Q psy10562 68 KRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112 (135)
Q Consensus 68 ~~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~H~Ff 112 (135)
..++|.|..-.. ...-..++.+..+.|...|++.|.--
T Consensus 356 E~~~~~Ir~~~~-------r~~~~~~~d~~~d~l~~~c~D~~~~s 393 (1332)
T KOG4371|consen 356 EEAPKSIRPPRY-------RKSREIEEDVVVDRLVEECVDEKEDS 393 (1332)
T ss_pred hccccccCCccc-------ccccccccchhHHHHHHHhcchhhhH
Confidence 999999975432 23345678889999999999998754
No 32
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=42.43 E-value=1.2e+02 Score=21.49 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHhhccC-CccceeEeeecCCCCeEEEEEeCCeeEE--eeCCcee---------------eeeecccc
Q psy10562 1 GQSPAAADLNLLETARRCE-LYGVKLHPAKDHDNILLNLSVAHMGILV--FQNQTKI---------------NTFSWAKI 62 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~-~YGv~~~~vkd~~~~~~~lGvs~~GI~i--y~~~~~~---------------~~f~W~~I 62 (135)
|++.++.+..|=+-++..+ .||.+.+-=.+....=+.+|+ -.|..+ |.++..+ ..+.|...
T Consensus 2 G~s~~~v~~~~G~P~R~~~s~ygy~w~vY~~~~~~y~~vgv-~~~kV~~lyt~~~~~~~~p~kiG~s~~~v~~~~~~~p~ 80 (141)
T PF14504_consen 2 GKSKEEVEEKLGEPDRIDPSEYGYEWWVYNQDDYQYVQVGV-KDGKVVALYTNGNDINVSPFKIGMSKSEVFKKLGIEPE 80 (141)
T ss_pred CCCHHHHHHHcCCccEeecCCCCcEEEEEcCCCCcEEEEEE-ECCEEEEEEECCcccccCCeecCCCHHHHHHhcCCCcc
Confidence 6677777777666565555 699999876665555666788 445444 6554321 46778899
Q ss_pred cceeeeccEEEEEEecCC
Q psy10562 63 RKISFKRKRFLIKLHPEG 80 (135)
Q Consensus 63 ~~l~f~~k~F~I~~~~~~ 80 (135)
..+...+..+.++..+++
T Consensus 81 ~~i~~~~~~Y~~else~d 98 (141)
T PF14504_consen 81 FSIKKGNNSYQFELSEED 98 (141)
T ss_pred EEEEECCEEEEEecCccc
Confidence 999999999999986543
No 33
>cd01217 CG12581 CG12581 Phosphotyrosine-binding (PTB) domain. CG12581 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=41.76 E-value=1.4e+02 Score=21.87 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=22.4
Q ss_pred cCCCCeEEEEEeCCeeEEe-eCC---ceeeeeeccccc
Q psy10562 30 DHDNILLNLSVAHMGILVF-QNQ---TKINTFSWAKIR 63 (135)
Q Consensus 30 d~~~~~~~lGvs~~GI~iy-~~~---~~~~~f~W~~I~ 63 (135)
++.+.+-+|-||+.|+.+- .+. .....||..+|.
T Consensus 39 ~kKl~~gsL~Ics~GLrvk~s~~~~~~E~~~fP~~~i~ 76 (158)
T cd01217 39 KKKGIDSWLSVWSNGLLLEISALAEKNETLFFPIHNLH 76 (158)
T ss_pred ccccccceEEEecCceEEEeccccccccccccccceee
Confidence 4567888999999999994 322 223455544443
No 34
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=41.10 E-value=1e+02 Score=20.88 Aligned_cols=45 Identities=18% Similarity=0.481 Sum_probs=28.8
Q ss_pred eeeecccccceeeec-cEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhc
Q psy10562 55 NTFSWAKIRKISFKR-KRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVEN 108 (135)
Q Consensus 55 ~~f~W~~I~~l~f~~-k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~ 108 (135)
..++|+.-.++..+. +.|.|++.+ + +|++.+++.--..|-.+++.
T Consensus 52 GeI~~~~~l~v~~k~~~~F~I~tp~-------R--tY~l~d~~~~A~~W~~~I~~ 97 (104)
T PF14593_consen 52 GEIPWSKELSVEVKSFKTFFIHTPK-------R--TYYLEDPEGNAQQWVEAIEE 97 (104)
T ss_dssp EEE--STT-EEEECSSSEEEEEETT-------E--EEEEE-TTS-HHHHHHHHHH
T ss_pred cEEecCCceEEEEccCCEEEEECCC-------c--EEEEECCCCCHHHHHHHHHH
Confidence 689999887777777 889998752 2 36666666666668887763
No 35
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=40.41 E-value=28 Score=23.07 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy10562 1 GQSPAAADLNLLETARR 17 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~ 17 (135)
|||+++|...||+.+-+
T Consensus 27 Glt~S~airm~L~~va~ 43 (88)
T COG3077 27 GLTISDAIRMFLTKVAR 43 (88)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 89999999999998765
No 36
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.77 E-value=81 Score=21.96 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=34.1
Q ss_pred EeCCeeEEeeCCce--eeeeecccccceeee------ccEEEEEEecCCCCcceeeEEEEecChHHHHHHHHHHhhc
Q psy10562 40 VAHMGILVFQNQTK--INTFSWAKIRKISFK------RKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVEN 108 (135)
Q Consensus 40 vs~~GI~iy~~~~~--~~~f~W~~I~~l~f~------~k~F~I~~~~~~~~~~~~~~~f~~~s~~~ak~lw~~~ve~ 108 (135)
|+-+|...|.+.+. --.|||++|..+.-+ .+.|.|.+...+ + |.+.|. .++.+++.+.++
T Consensus 29 iGDkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~g------k--~~FaSk-dsg~iLk~ir~y 96 (122)
T COG4687 29 IGDKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQG------K--VRFASK-DSGKILKKIREY 96 (122)
T ss_pred EcccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEcCCc------e--EEEEeC-CchhHHHHHHHH
Confidence 34566666755443 357999999865432 346777765332 3 334433 445566665554
No 37
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.15 E-value=73 Score=22.72 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCeEEEEEeCCeeEEeeCCce--eeeeeccccc
Q psy10562 33 NILLNLSVAHMGILVFQNQTK--INTFSWAKIR 63 (135)
Q Consensus 33 ~~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~ 63 (135)
...+.|=||..||.+.....+ +..+++.+|.
T Consensus 49 ~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~IS 81 (138)
T cd01268 49 PVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVS 81 (138)
T ss_pred CCEEEEEEecCcEEEEecCCCcEEEEEeEEEEE
Confidence 567899999999999866543 4555544443
No 38
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=35.00 E-value=54 Score=21.53 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.8
Q ss_pred cceeEeeecCCCCeEEEEEeCCeeE
Q psy10562 22 GVKLHPAKDHDNILLNLSVAHMGIL 46 (135)
Q Consensus 22 Gv~~~~vkd~~~~~~~lGvs~~GI~ 46 (135)
|.++|.|+=.++..+.|||+...+.
T Consensus 2 G~~YwEV~v~~~~~~~vGv~~~~~~ 26 (122)
T smart00449 2 GRHYFEVEIFDGGHWRVGVATKSVP 26 (122)
T ss_pred CcEEEEEEEcCCCeEEEEEEcCccC
Confidence 7899999766678899999988765
No 39
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=33.06 E-value=2.1e+02 Score=21.41 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCCeEEEEEeCCeeEEeeCCceeeeeecccccceee------eccEEEEEEecCCCC--cceeeEEEEecChHHHHHHHH
Q psy10562 32 DNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISF------KRKRFLIKLHPEGYG--YYKDIVEFLFDNRNDCKNFWK 103 (135)
Q Consensus 32 ~~~~~~lGvs~~GI~iy~~~~~~~~f~W~~I~~l~f------~~k~F~I~~~~~~~~--~~~~~~~f~~~s~~~ak~lw~ 103 (135)
.+....|-|++.||.+-..+.....|+ |.+|+| ..+-|...++..... ..-+-..|-|++...|+.|-.
T Consensus 37 ~~~~m~L~V~~~Gik~~~~~~~~~~y~---i~RItYC~ad~~~PrVFawIyrhe~~~~~~~L~CHAvlC~k~~~Akama~ 113 (182)
T PF14719_consen 37 PDKKMKLTVSPSGIKMETKDKGLTEYW---IHRITYCTADPQHPRVFAWIYRHEGKKLKVELRCHAVLCSKEEKAKAMAR 113 (182)
T ss_pred CCceeEEEEcCCceEEEECCCCceEEE---eeeEEEecCCCCCCceEEEEEEcccCCCcccEEEEEEEECCHHHHHHHHH
Confidence 456788999999999975554333333 555544 468898877654321 112344678999999998844
Q ss_pred H
Q psy10562 104 K 104 (135)
Q Consensus 104 ~ 104 (135)
.
T Consensus 114 ~ 114 (182)
T PF14719_consen 114 A 114 (182)
T ss_pred H
Confidence 3
No 40
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=32.05 E-value=1.5e+02 Score=19.49 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=44.7
Q ss_pred CeEEEEEeCCeeEEeeCCc--eeeeeecccccceeeeccEEEEEEec-CCCCcceeeEEEEecCh
Q psy10562 34 ILLNLSVAHMGILVFQNQT--KINTFSWAKIRKISFKRKRFLIKLHP-EGYGYYKDIVEFLFDNR 95 (135)
Q Consensus 34 ~~~~lGvs~~GI~iy~~~~--~~~~f~W~~I~~l~f~~k~F~I~~~~-~~~~~~~~~~~f~~~s~ 95 (135)
.+.+|-|++..|.+..... .+..+|...|.+--..+..|.++.-. .+.+ +-...|.+++.
T Consensus 22 g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG--~G~f~f~t~~a 84 (100)
T PF02174_consen 22 GPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTG--EGLFWFQTPDA 84 (100)
T ss_dssp EEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTC--SEEEEEEESTH
T ss_pred EEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCEEEEEECCcCCCC--CcEEEEEeCCH
Confidence 4688999999999964443 45778889999999999999999842 2221 23667777773
No 41
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=31.17 E-value=48 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHhhccC
Q psy10562 1 GQSPAAADLNLLETARRCE 19 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~L~ 19 (135)
||++++|...|++.+..-.
T Consensus 24 Gls~S~Ai~~fl~qi~~~~ 42 (80)
T PRK11235 24 GVTPSEALRLLLQYVAENG 42 (80)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 8999999999999886543
No 42
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=30.30 E-value=46 Score=21.25 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy10562 1 GQSPAAADLNLLETARR 17 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~ 17 (135)
||++++|...|++.+..
T Consensus 24 Glt~s~ai~~fl~qiv~ 40 (83)
T PF04221_consen 24 GLTLSDAINMFLKQIVR 40 (83)
T ss_dssp T--HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 89999999999998753
No 43
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=29.38 E-value=54 Score=28.29 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=46.7
Q ss_pred hhccCCccceeEeeecCCCCeEEEEE---eCCeeEEeeCCc--ee--------eeeecccccceeeeccEEEEEEecCC
Q psy10562 15 ARRCELYGVKLHPAKDHDNILLNLSV---AHMGILVFQNQT--KI--------NTFSWAKIRKISFKRKRFLIKLHPEG 80 (135)
Q Consensus 15 a~~L~~YGv~~~~vkd~~~~~~~lGv---s~~GI~iy~~~~--~~--------~~f~W~~I~~l~f~~k~F~I~~~~~~ 80 (135)
-..+++||+|.|+..++.|...++=. +-+||.=..+.. ++ ..=-|..|.+=.|-+=++.|++-+.+
T Consensus 198 yR~M~GfgvHtf~~vN~~Ge~~~VKfH~k~~qGik~Lt~~EA~ki~g~d~d~~~~dL~eaIe~Gd~P~W~l~VQvm~~~ 276 (496)
T COG0753 198 YRHMEGFGVHTFKFVNAKGKRVWVKFHFKPKQGIKNLTWDEAAKLAGKDPDYHQRDLYEAIENGDFPEWDLYVQVMPEE 276 (496)
T ss_pred hhcCCCccceeEEEEcCCCCEEEEEEEEEeccccccCCHHHHHHHhccCccHHHHHHHHHHHcCCCCceEEEEEecChh
Confidence 35788999999999999999888754 446765543222 11 12238888888888888888887643
No 44
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=27.67 E-value=1e+02 Score=20.00 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccCCccceeEeeecCCCCeEEEEEeCCeeEEeeCCcee----eeeeccccccee
Q psy10562 6 AADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI----NTFSWAKIRKIS 66 (135)
Q Consensus 6 eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~~lGvs~~GI~iy~~~~~~----~~f~W~~I~~l~ 66 (135)
.....||..+..-.++-+.+-++.| ||+...|-.+=.++.++ ..|||.-+..-.
T Consensus 14 ~~t~~yL~~~a~qaG~~~~~~~i~~-------l~~~~~g~~~d~~~~~I~~lfkLyPwE~m~~e~ 71 (97)
T PF03738_consen 14 RGTVQYLMDTARQAGLDTRFIPIED-------LGWDEDGRFYDGDGRPIDVLFKLYPWEWMAEEE 71 (97)
T ss_dssp HHHHHHHHHHHHHTT-EEEEETTTT-------EEE-TTS-EEETTS-B--EEEESS-HHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCCeEEechHh-------eEECCCCcEECCCCCChheehhhchHHHHhhCc
Confidence 4566888877766655555544443 78887666653334343 578997766553
No 45
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=26.16 E-value=2.1e+02 Score=19.30 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=48.5
Q ss_pred CeEEEEEeCCeeEEeeCCce--eeeeecccccceeeeccEEEEEEec-CCCCcceeeEEEEec-ChHHHHHHHHH
Q psy10562 34 ILLNLSVAHMGILVFQNQTK--INTFSWAKIRKISFKRKRFLIKLHP-EGYGYYKDIVEFLFD-NRNDCKNFWKK 104 (135)
Q Consensus 34 ~~~~lGvs~~GI~iy~~~~~--~~~f~W~~I~~l~f~~k~F~I~~~~-~~~~~~~~~~~f~~~-s~~~ak~lw~~ 104 (135)
.+.+|=+++..|.++..+.+ ...+|+..|.+--+++..|+++.-. ...+ +-.+.|.++ +...++.+=..
T Consensus 21 G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG--~G~f~f~t~~~~~I~~~v~~~ 93 (104)
T cd00824 21 GSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSNLFSFEAGRRCVTG--EGIFTFQTDRAEEIFQNVHET 93 (104)
T ss_pred eeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCCEEEEEccCcCCCC--CCEEEEEcCCHHHHHHHHHHH
Confidence 47889999999999876643 4566777999999999999999842 1111 236677777 45555555443
No 46
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=25.63 E-value=2.6e+02 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=17.8
Q ss_pred CCCCeEEEEEeCCeeEEeeCCc
Q psy10562 31 HDNILLNLSVAHMGILVFQNQT 52 (135)
Q Consensus 31 ~~~~~~~lGvs~~GI~iy~~~~ 52 (135)
.....++|-||..||.|.....
T Consensus 50 ~kk~kV~L~IS~dGi~v~D~~T 71 (139)
T cd01215 50 AHKTRITLQINIDGIKVLDEKT 71 (139)
T ss_pred cccceEEEEEccCCEEEEcCCC
Confidence 3557899999999999986543
No 47
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=25.45 E-value=71 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy10562 1 GQSPAAADLNLLETARR 17 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~~ 17 (135)
|+++++|...||+.+-+
T Consensus 25 Gl~~s~ai~~fl~qvv~ 41 (83)
T TIGR02384 25 GLTPSTAIRMFLKQVIR 41 (83)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 89999999999997754
No 48
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=24.09 E-value=95 Score=20.98 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHhhccCCccceeEeeecC------CCCeEEEEEeC
Q psy10562 9 LNLLETARRCELYGVKLHPAKDH------DNILLNLSVAH 42 (135)
Q Consensus 9 ~~fL~~a~~L~~YGv~~~~vkd~------~~~~~~lGvs~ 42 (135)
.+.++....++.-|+..+-+.|. .|+...|||+|
T Consensus 61 ~~L~~l~~~a~~~gl~~~~i~Dag~Tei~pgs~TvlaigP 100 (116)
T PF01981_consen 61 EELLELAKKAKEAGLPHYLIRDAGRTEIPPGSVTVLAIGP 100 (116)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCcCCCCCeEEEEECc
Confidence 34455566666678888888884 57778888876
No 49
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=23.29 E-value=83 Score=26.24 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHhh--ccCCccceeEee
Q psy10562 1 GQSPAAADLNLLETAR--RCELYGVKLHPA 28 (135)
Q Consensus 1 G~s~~eAe~~fL~~a~--~L~~YGv~~~~v 28 (135)
|+++++|+..+...++ .|+.+|+|+|-.
T Consensus 170 G~~~~~a~~~~~~~~~~~~l~~~Glh~HiG 199 (394)
T COG0019 170 GISPEEALDVLERAAKLLGLELVGLHFHIG 199 (394)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 7888887666666654 478899999954
No 50
>PF07205 DUF1413: Domain of unknown function (DUF1413); InterPro: IPR010813 This family consists of several hypothetical bacterial proteins, which seem to be specific to Staphylococcus species. Members of this family are typically around 100 residues in length. The function of this family is unknown.
Probab=22.54 E-value=2e+02 Score=17.61 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhccCCccceeEeeecCCCCeE
Q psy10562 5 AAADLNLLETARRCELYGVKLHPAKDHDNILL 36 (135)
Q Consensus 5 ~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~ 36 (135)
..++..|+..+.+-+..++.+- -||++|..+
T Consensus 37 ~~~g~~F~~~V~~~~~~~i~~~-~k~s~~~~~ 67 (70)
T PF07205_consen 37 QSLGRAFLYEVKQGPIVRIKII-GKDSNGQQL 67 (70)
T ss_pred HHHHHHHHHHHHhCCCCceEEE-eecCcccee
Confidence 4688999999999999888764 345555544
No 51
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=21.89 E-value=1.3e+02 Score=20.57 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHhhccCCccceeEeeecC------CCCeEEEEEeC
Q psy10562 10 NLLETARRCELYGVKLHPAKDH------DNILLNLSVAH 42 (135)
Q Consensus 10 ~fL~~a~~L~~YGv~~~~vkd~------~~~~~~lGvs~ 42 (135)
..++.++++..=|+..+-+.|. .|+...||+.|
T Consensus 59 el~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~TvlaigP 97 (113)
T PRK04322 59 ELLELKEKAERLGLPTALIRDAGLTQLPPGTVTALGIGP 97 (113)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCCCcEEEEeCC
Confidence 3456666666679999999874 56677777765
No 52
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.85 E-value=70 Score=20.41 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHhhccCCccceeEeeecCCCCeE
Q psy10562 2 QSPAAADLNLLETARRCELYGVKLHPAKDHDNILL 36 (135)
Q Consensus 2 ~s~~eAe~~fL~~a~~L~~YGv~~~~vkd~~~~~~ 36 (135)
+|.+||....++....+.-=|-.++-|-|.+|.-+
T Consensus 35 ls~eea~~~a~~~l~~~r~~~~gY~fi~d~~g~~l 69 (95)
T PF08269_consen 35 LSEEEAQQQAREALRALRYGGDGYFFIYDMDGVVL 69 (95)
T ss_dssp ----TTHHHHHHHHHH--SBTTB--EEE-TTSBEE
T ss_pred ccHHHHHHHHHHHHhccccCCCCeEEEEeCCCeEE
Confidence 67889998888888877653345555555555443
No 53
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=21.24 E-value=1.4e+02 Score=20.45 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHhhccCCccceeEeeecC------CCCeEEEEEeCC
Q psy10562 10 NLLETARRCELYGVKLHPAKDH------DNILLNLSVAHM 43 (135)
Q Consensus 10 ~fL~~a~~L~~YGv~~~~vkd~------~~~~~~lGvs~~ 43 (135)
..++.++++..-|+..+-++|. .|+...|||.|-
T Consensus 61 el~~l~~~a~~~~l~~~~v~DAG~Tei~pgs~TvlaigP~ 100 (115)
T TIGR00283 61 ELLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGIGPD 100 (115)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcceeCCCCcEEEEECCC
Confidence 3466666777779999999884 566667777663
No 54
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.64 E-value=1.5e+02 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCeEEEEEeCCeeEEeeCCcee-----eeeecccccceeee
Q psy10562 33 NILLNLSVAHMGILVFQNQTKI-----NTFSWAKIRKISFK 68 (135)
Q Consensus 33 ~~~~~lGvs~~GI~iy~~~~~~-----~~f~W~~I~~l~f~ 68 (135)
...+.|-||.+||.+-....+. ..-....|.+|+|-
T Consensus 44 ~~~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nISFC 84 (148)
T cd01212 44 PQTCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNISFC 84 (148)
T ss_pred CcEEEEEEecCcEEEEecCCCcccccchhhccccccceEEE
Confidence 4578999999999998664431 01123457777764
Done!