RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10562
(135 letters)
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 138 bits (350), Expect = 1e-41
Identities = 47/113 (41%), Positives = 67/113 (59%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWA 60
+PA ADL LE A++ +YGV LH AKD + + + L V G+LV++++ +IN F W
Sbjct: 184 SMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWP 243
Query: 61 KIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
K+ KIS+KR F IK+ P Y+ + F + K WK CVE+H FFR
Sbjct: 244 KVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 120 bits (303), Expect = 1e-34
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TF 57
G++ A++ L+ A+ E+YGV ++ L L V +G+ ++ + ++ +F
Sbjct: 198 GRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISF 257
Query: 58 SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
W +IR IS+ K F IK D+ +F K + C+ NH F
Sbjct: 258 PWNEIRNISYSDKEFTIKPLD----KKIDVFKFNSSKLRVNKLILQLCIGNHDLFM 309
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 116 bits (292), Expect = 4e-33
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TF 57
G A L L+ A+ E+YGV K+ L L V +G+ +++ ++ F
Sbjct: 178 GMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGF 237
Query: 58 SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
W++IR ISF K+F+IK F K C+ NH +
Sbjct: 238 PWSEIRNISFNDKKFVIKPI----DKKAPDFVFYAPRLRINKRILALCMGNHELYM 289
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 113 bits (284), Expect = 1e-30
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 8/138 (5%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINT---F 57
G A + L+ A+ E+YGV ++ N L L V +G+ +++ K+ F
Sbjct: 181 GMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGF 240
Query: 58 SWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFRCSAV 117
W++IR ISF ++F+IK + F K C+ NH +
Sbjct: 241 PWSEIRNISFNDRKFIIKPIDK----KAPDFVFFAPRVRVNKRILALCMGNHELYMRRR- 295
Query: 118 KNTPRQRTRVLSRGSSFR 135
K ++ ++ +
Sbjct: 296 KPDTIDVQQMKAQAREEK 313
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 96.1 bits (239), Expect = 9e-26
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQTK-- 53
S A + ++ AR + YGV K+ + + L + ++ +TK
Sbjct: 105 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 164
Query: 54 INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
I +S I++ + K F + GY + + + +
Sbjct: 165 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 216
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 97.3 bits (242), Expect = 3e-25
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKDHD-----NILLNLSVAHMGILVFQNQTK-- 53
S A + ++ AR + YGV K+ + L + ++ +TK
Sbjct: 259 QMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 318
Query: 54 INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
I +S I++ + K F + GY + + + +
Sbjct: 319 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 370
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 91.5 bits (227), Expect = 4e-24
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQTK-- 53
S A + ++ AR + YGV K+ + + L + ++ +TK
Sbjct: 94 NMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEV 153
Query: 54 INTFSWAKIRKISFKRKRFLIKLHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFF 112
I +S I++ + K F + GY + + + +
Sbjct: 154 IQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQTT-EGEQIAQLIAGYIDII 205
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 45.3 bits (107), Expect = 1e-06
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 19/98 (19%)
Query: 1 GQSPAAADLNLLETARRCELYGVKLHPA--------KDHDNILLNLSVAHMGILVFQNQT 52
+ L+ YG +H I + + V G+ + +T
Sbjct: 201 SKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMET 260
Query: 53 K-------INTFSWAKIRKISFKRKRFLIKLHPEGYGY 83
K F W ++ F I +
Sbjct: 261 KALLISLKYGCFMW----QLGDTDTCFQIHSMENKMSF 294
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1,
structural genomics, PSI-2, protein structure
initiative; HET: MSE UNL; 1.69A {Lactobacillus casei}
SCOP: d.198.4.1
Length = 123
Score = 28.4 bits (63), Expect = 0.40
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 29 KDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLH-PEGYGYYKDI 87
DH ++ + + + V + F + + H P D+
Sbjct: 47 TDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDL 106
Query: 88 VEFLFDNRNDCKNFWKK 104
+ + D + D FW++
Sbjct: 107 IAYTIDQKKDATTFWQR 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.46
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 24/64 (37%)
Query: 47 VFQNQTKINTFSW--AKIRKISF----------------KRKRFLIKLHPEGYGYYKDIV 88
VF + F + KIR S K ++ P+ I+
Sbjct: 496 VFLD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 89 EFLF 92
+FL
Sbjct: 550 DFLP 553
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A
{Haemophilus influenzae}
Length = 344
Score = 28.7 bits (65), Expect = 0.51
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
+I+ PE Y Y +F F+ NRN
Sbjct: 159 AHIIRDLPEEYKIYS-EKDFTFNKIKQPNRN 188
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel
beta-sheet, omega-like loop, hydrolase; 2.80A
{Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Length = 379
Score = 28.9 bits (65), Expect = 0.54
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
R LIK +P+ K F + N
Sbjct: 178 RNLIKKYPQVLEITK-KPSSTFAGMTITSTN 207
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding
protein, BP6, DD-carboxypeptidase, peptidoglycan,
ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A
{Escherichia coli} PDB: 3it9_A* 3itb_A*
Length = 352
Score = 28.4 bits (64), Expect = 0.80
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
+ LI PE Y +K EF F+ NRN
Sbjct: 166 KALIHDVPEEYAIHK-EKEFTFNKIRQPNRN 195
>3mzf_A D-alanyl-D-alanine carboxypeptidase DACA; beta-lactam antibiotic,
penicillin-binding protein, DD- carboxypeptidase,
hydrolase; HET: IM2; 1.50A {Escherichia coli} PDB:
1nzu_A 1nzo_A* 3beb_A* 3bec_A* 3mzd_A* 3mze_A* 1z6f_A*
1nj4_A 1hd8_A 1sdn_A 4drt_A
Length = 363
Score = 28.0 bits (63), Expect = 0.96
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
+ LI+ P Y YK EF F+ NRN
Sbjct: 170 QALIRDVPNEYSIYK-EKEFTFNGIRQLNRN 199
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc
target, SAV0642, PSI, protein structure initiative;
2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Length = 369
Score = 27.0 bits (60), Expect = 2.1
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
+IK P+ + K + N
Sbjct: 199 LHVIKETPKILDFTK-QLAPTTHAVTYYTFN 228
>2oc6_A YDHG protein; secretion chaperone-like fold, structural genomics,
joint CE structural genomics, JCSG, protein structure
initiative; 1.75A {Bacillus subtilis} SCOP: d.198.4.1
Length = 124
Score = 26.1 bits (57), Expect = 2.4
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 29 KDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKL---HPEGYGYYK 85
DH ++ SV+ + V + I I K + LI++ P Y +
Sbjct: 47 TDHGTFIIGFSVSKKHLAVAPEKVTIAHVE-DDIVKAGYDYTEQLIRIPWNGPVDYTLLE 105
Query: 86 DIVEFLFDNRNDCKNFWKK 104
++EF ++ DC FW+K
Sbjct: 106 KMIEFNILDKADCSTFWRK 124
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET:
ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 26.7 bits (59), Expect = 2.8
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 71 RFLIKLHPEGYGYYKDIVEFLFD-----NRN 96
+IK P+ + K + N
Sbjct: 235 LHVIKETPKILDFTK-QLAPTTHAVTYYTFN 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.435
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,067,567
Number of extensions: 112198
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 30
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)