RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10562
(135 letters)
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 113 bits (285), Expect = 1e-34
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 22 GVKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGY 81
GV LH AKD + + + L V G+LV++++ +IN F W K+ KIS+KR F IK+ P
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQ 60
Query: 82 GYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
Y+ + F + K WK CVE+H FFR
Sbjct: 61 EQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 92
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 106 bits (267), Expect = 6e-32
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 19 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TFSWAKIRKISFKRKRFLIK 75
E+YGV K+ L L V +G+ +++ ++ F W++IR ISF K+F+IK
Sbjct: 1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60
Query: 76 LHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ F K C+ NH +
Sbjct: 61 PIDK----KAPDFVFYAPRLRINKRILALCMGNHELYM 94
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 104 bits (262), Expect = 4e-31
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 19 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN---TFSWAKIRKISFKRKRFLIK 75
E+YGV ++ L L V +G+ ++ + ++ +F W +IR IS+ K F IK
Sbjct: 1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60
Query: 76 LHPEGYGYYKDIVEFLFDNRNDCKNFWKKCVENHGFFR 113
+ D+ +F K + C+ NH F
Sbjct: 61 PLDK----KIDVFKFNSSKLRVNKLILQLCIGNHDLFM 94
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 29.1 bits (65), Expect = 0.070
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 GQSPAAADLNLLETARRCELY 21
+PA ADL LE A++ +Y
Sbjct: 86 SMTPAQADLEFLENAKKLSMY 106
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 26.8 bits (59), Expect = 0.48
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 1 GQSPAAADLNLLETARRCELY 21
S A + ++ AR + Y
Sbjct: 94 NMSEIEAKVRYVKLARSLKTY 114
>d2oc6a1 d.198.4.1 (A:1-123) Uncharacterized protein YdhG {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 26.0 bits (57), Expect = 1.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 85 KDIVEFLFDNRNDCKNFWKK 104
+ ++EF ++ DC FW+K
Sbjct: 104 EKMIEFNILDKADCSTFWRK 123
>d1ryla_ d.276.1.1 (A:) Hypothetical protein yfbM {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 25.6 bits (56), Expect = 1.7
Identities = 6/61 (9%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 53 KINTFSWAKIRKISFKRKRFLI-KLHPEGYGYYK---DIVEFLFDNRNDCKNFWKKCVEN 108
++ + ++RK F KR +++P + + + + + +++ +
Sbjct: 97 RLESLDRNELRK-QFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQ 155
Query: 109 H 109
Sbjct: 156 G 156
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 25.9 bits (56), Expect = 1.8
Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 23 VKLHPAKDHDNILLNLSVAHMGILVFQNQTKINTFSWAKIRKISFKRKRFLIKLHPEGYG 82
VKL + + + + + +G L Q + + A + +++ L L + +
Sbjct: 71 VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFV 130
Query: 83 YYKDIVE-FLFDNRNDCKN---FWKKCVENHGFFRCSAVKNTPR 122
+ L + + K + +E+ +++ S K +
Sbjct: 131 HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 174
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283
{Lactobacillus casei [TaxId: 1582]}
Length = 121
Score = 25.2 bits (55), Expect = 2.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 85 KDIVEFLFDNRNDCKNFWKK 104
D++ + D + D FW++
Sbjct: 102 HDLIAYTIDQKKDATTFWQR 121
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 24.8 bits (54), Expect = 2.3
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 1 GQSPAAADLNLLETARR 17
G++ A++ L+ A+
Sbjct: 94 GRARDEAEMEYLKIAQD 110
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency
virus [TaxId: 11723]}
Length = 114
Score = 24.2 bits (53), Expect = 3.7
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 6 AADLNLLETARRCELYGVKLHPA 28
+LLE C+ L P
Sbjct: 40 GLAESLLENKEGCQKILSVLAPL 62
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 24.5 bits (53), Expect = 3.7
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 1 GQSPAAADLNLLETARR 17
G A L L+ A+
Sbjct: 94 GMLREDAVLEYLKIAQD 110
>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL
{Escherichia coli [TaxId: 562]}
Length = 104
Score = 23.6 bits (51), Expect = 6.4
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 68 KRKRFLIKLHPEGYGYYKD 86
RK F+++++P+ + Y+
Sbjct: 2 IRKAFVMQVNPDAHEEYQR 20
>d1lmma_ g.3.6.2 (A:) Psalmotoxin 1 {Spider (Psalmopoeus cambridgei)
[TaxId: 179874]}
Length = 40
Score = 21.9 bits (46), Expect = 9.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 97 DCKNFWKKCVENHG 110
DC WK CV HG
Sbjct: 2 DCIPKWKGCVNRHG 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.435
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,502
Number of extensions: 23406
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 23
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.6 bits)