BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10566
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 17/300 (5%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AW
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAW 97
Query: 356 SPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
S DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 98 SSDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDE 153
Query: 415 QFYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQ 470
D++ G+ L + V+ + DG ++++ R ++ L+
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 471 EDHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ 529
+D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 273
Query: 530 DFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 274 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 332
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 180
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 181 FNRDGSLIVSSSYDGLCRIW 200
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 42 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 77
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 222
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 17/300 (5%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AW
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAW 95
Query: 356 SPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
S DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 96 SSDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDE 151
Query: 415 QFYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQ 470
D++ G+ L + V+ + DG ++++ R ++ L+
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 471 EDHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ 529
+D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 271
Query: 530 DFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 330
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 178
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 179 FNRDGSLIVSSSYDGLCRIW 198
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 40 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 75
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 220
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 80
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 81 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 136
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 162
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 163 FNRDGSLIVSSSYDGLCRIW 182
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFA 248
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 249 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 281
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 59
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 204
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 91
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 92 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 147
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 207
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 325
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 173
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 174 FNRDGSLIVSSSYDGLCRIW 193
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 259
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 260 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 292
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 35 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 70
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 215
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 80
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 81 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 136
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 162
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 163 FNRDGSLIVSSSYDGLCRIW 182
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFA 248
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 249 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 281
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 59
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 204
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 75
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 76 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 131
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 191
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 309
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 157
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 158 FNRDGSLIVSSSYDGLCRIW 177
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 243
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 244 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 276
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 19 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 54
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 199
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 79
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 80 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 135
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 195
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 313
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 161
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 162 FNRDGSLIVSSSYDGLCRIW 181
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 247
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 248 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 280
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 23 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 58
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 203
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 70
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 71 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 126
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 186
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 304
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 152
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 153 FNRDGSLIVSSSYDGLCRIW 172
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 238
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 239 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 271
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 14 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 49
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 194
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 77
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 78 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 133
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G L + V+ + DG ++++ R ++ L+ +
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T KTL H+ V+ +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGMCLKTLPAHSDPVSAVH 159
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 160 FNRDGSLIVSSSYDGLCRIW 179
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D + +WD + KT GH +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 246 NFSVTGGKWIVSGSED-NMVYIWNLQTKEIVQKL 278
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 201
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 77
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 78 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 133
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G L + V+ + DG ++++ R ++ L+ +
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T KTL H+ V+ +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGMCLKTLPAHSDPVSAVH 159
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 160 FNRDGSLIVSSSYDGLCRIW 179
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 246 NFSVTGGKWIVSGSED-NMVYIWNLQTKEIVQKL 278
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 201
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 80
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 81 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 136
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 162
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 163 FNRDGSLIVSSSYDGLCRIW 182
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 248
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 249 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 281
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 24 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 59
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 204
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 73
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 74 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 129
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 189
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 307
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 155
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 156 FNRDGSLIVSSSYDGLCRIW 175
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 241
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 242 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 274
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 17 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 52
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 197
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 74
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 75 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 130
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 156
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 157 FNRDGSLIVSSSYDGLCRIW 176
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 242
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 243 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 275
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 53
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 198
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 74
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 75 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 130
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 308
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 156
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 157 FNRDGSLIVSSSYDGLCRIW 176
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 242
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 243 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 275
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 53
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 198
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA S D + IW + + KT+ GH LG++ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 77
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 78 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 133
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T+++W
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 159
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 160 FNRDGSLIVSSSYDGLCRIW 179
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 246 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 278
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 201
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +A+ S D ++IWG +
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAY 56
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 22/305 (7%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
Q L H VW FSPDG +A+ S D TV +W+ + Q +TL GH+ V +A
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVRGVA 105
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
+SPD + D + +WN +LL+ HS S+ +++ DG
Sbjct: 106 FSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSS--SVWGVAFSPDGQTIASASDDK 161
Query: 415 QFYQCDIEGQVLDSWEGVRVNCLWCRS---DGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
+ GQ+L + G + +W + DG+++ +A ++ +N L
Sbjct: 162 TVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 220
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF 531
V + + V LW+ ++L Q +T +++ +
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSSSVNGVAFRPDGQT 276
Query: 532 VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW---G 588
+AS S+D V +W+ +L + TL+GH+ +V VA++P Q IAS SDD TV++W G
Sbjct: 277 IASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG 334
Query: 589 PHLNT 593
HL T
Sbjct: 335 QHLQT 339
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 132/310 (42%), Gaps = 60/310 (19%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
Q L H VW FSPDG +A+ S D TV +W+ + QH +TL GH+ V +A
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQHLQTLTGHSSSVWGVA 351
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
+SPD + D + +WN +LL+ HS +RG
Sbjct: 352 FSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSS-------------------VRG 390
Query: 415 QFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHP 474
+ D GQ + S + LW R+ +L T H + D D
Sbjct: 391 VAFSPD--GQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPD------DQT 440
Query: 475 VMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVAS 534
+ S + D T V LW+ ++L Q +T ++ + +AS
Sbjct: 441 IASASDDKT------------VKLWNRNGQLL----QTLTGHSSSVRGVAFSPDGQTIAS 484
Query: 535 GSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTN 594
S+D V +W+ +L + TL+GH+ +V VA++P Q IAS SDD TV++W N
Sbjct: 485 ASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW------N 536
Query: 595 KSPHLASSLT 604
++ L +LT
Sbjct: 537 RNGQLLQTLT 546
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 140/326 (42%), Gaps = 31/326 (9%)
Query: 282 HLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK 341
H+ KE E H V FSPDG +A+ S D TV +W+ + Q +
Sbjct: 3 HMGVKERNRLEA------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQ 51
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWN 401
TL GH+ V +A+SPD + D + +WN +LL+ HS S+ +++
Sbjct: 52 TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSS--SVRGVAFS 107
Query: 402 RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRS---DGKSVLAADTHHRIRTY 458
DG + GQ+L + G + +W + DG+++ +A ++ +
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 459 NFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQF 518
N L V + + V LW+ ++L Q +T
Sbjct: 167 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSS 222
Query: 519 TIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASV 578
++ + +AS S+D V +W+ +L + TL+GH+ +V+ VA+ P Q IAS
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRP-DGQTIASA 280
Query: 579 SDDCTVRIWGPHLNTNKSPHLASSLT 604
SDD TV++W N++ L +LT
Sbjct: 281 SDDKTVKLW------NRNGQLLQTLT 300
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWD 329
Q L H VW FSPDG +A+ S D TV +W+
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 77
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 78 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 133
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T++++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLY 311
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 159
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 160 FNRDGSLIVSSSYDGLCRIW 179
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 246 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 278
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 201
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 137/299 (45%), Gaps = 17/299 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H V KFSP+G LA+ S D + IW + + KT+ GH LG++ +AWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGISDVAWS 77
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
DS+ L+V D L +W++ + + L+ HS + + C++N V G
Sbjct: 78 SDSN--LLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDES 133
Query: 416 FYQCDIE-GQVLDSWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNFEH-LTDSNLLQE 471
D++ G+ L + V+ + DG ++++ R ++ L+ +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 472 DHPVMSFT-IDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
D+P +SF + L + LWD L+ + G ++ I + F
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
++ SGSED VYIW+++ + + L GHT V A +P +IAS + +D T++++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLF 311
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+ +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 159
Query: 355 WSPDSSHLLVVGPEDCHELW 374
++ D S ++ + +W
Sbjct: 160 FNRDGSLIVSSSYDGLCRIW 179
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT--LGVAYL 353
+++D V F KFSP+G + + D T+ +WD + KT GH +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEKYCIFA 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
+S +V G ED + +++WN++T+ + KL
Sbjct: 246 NFSVTGGKWIVSGSED-NLVYIWNLQTKEIVQKL 278
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
TL+GHT+ VS V ++P + +AS S D ++IWG +
Sbjct: 21 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 56
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL-EGHTLGVAYL 353
+ L H D V F+ DG + + S D IWD T + Q KTL + V+++
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFV 201
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+SP+ ++L ++ +LW ++ + + L+ H E +++ G K++ G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 123/299 (41%), Gaps = 64/299 (21%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK---TLEGHTLGVAYLAWSPDSSHLLVV 365
FSPDG LATG++D + IWD+ ++RK L+GH + L + P S LV
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI-------ENRKIVMILQGHEQDIYSLDYFP-SGDKLVS 182
Query: 366 GPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQV 425
G D + +W++ T + L S ED +T+ + + K++ G D +V
Sbjct: 183 GSGD-RTVRIWDLRTG--QCSLTLSIEDGVTTVAVSPGDGKYIAAG------SLDRAVRV 233
Query: 426 LDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDR 485
DS G V L ++ + T H+ Y+ D V+S ++D
Sbjct: 234 WDSETGFLVERLDSENE------SGTGHKDSVYSVVFTRDG------QSVVSGSLD---- 277
Query: 486 LALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGG-----------ANQDFVAS 534
+ V LW+L++ K T T + G N +++ S
Sbjct: 278 --------RSVKLWNLQN--ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327
Query: 535 GSEDGKVYIWHVKRELPIATLSGHTRTVSCVA------WNPVYHQMIASVSDDCTVRIW 587
GS+D V W K P+ L GH +V VA P Y+ + A+ S DC RIW
Sbjct: 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIW 385
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 101/265 (38%), Gaps = 41/265 (15%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
+L H +++ + P G KL +GS D TV IWD+ T C ++E GV +A
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR--TGQCSLTLSIED---GVTTVAV 214
Query: 356 SPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPE------DSLTSCSWNRDGTKFVC 409
SP + G D + VW+ ET L +L+ E DS+ S + RDG V
Sbjct: 215 SPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 410 GGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLL 469
G + R LW ++ A+ +T N + +
Sbjct: 274 GSLD-------------------RSVKLW------NLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 470 QEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFG---G 526
+D V+S D L +GV WD + L QG ++ G G
Sbjct: 309 HKDF-VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 367
Query: 527 ANQDFVASGSEDGKVYIWHVKRELP 551
+ A+GS D K IW K+ P
Sbjct: 368 PEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 130/308 (42%), Gaps = 41/308 (13%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
++ +VL H D V C G ++ +GS D T+ +W VT C +TL GHT GV
Sbjct: 109 KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWS--AVTGKCL--RTLVGHTGGV- 162
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
WS +++ L VWN ET E + H+ S C + + V G
Sbjct: 163 ---WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHT---STVRCM-HLHEKRVVSG 215
Query: 411 GIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSN 467
DIE GQ L G V C+ + DG+ V++ ++ ++ E T +
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 468 LLQ-EDHPVMSFTIDATDRLA-LLNVSTQGVHLWDLRDRILLRKFQG---VTQGQFTIHS 522
LQ + V S D ++ L+ S + +WD+ + G +T G
Sbjct: 274 TLQGHTNRVYSLQFDGIHVVSGSLDTS---IRVWDVETGNCIHTLTGHQSLTSGM----- 325
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSG---HTRTVSCVAWNPVYHQMIASVS 579
+ + SG+ D V IW +K + TL G H V+C+ +N + + + S
Sbjct: 326 ---ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF---VITSS 379
Query: 580 DDCTVRIW 587
DD TV++W
Sbjct: 380 DDGTVKLW 387
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H VW + + + +GS D T+ +W+ + T C H TL GHT V +
Sbjct: 153 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE--TGECIH--TLYGHTSTVRCMH 206
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
+V G D L VW+IET + L V + H + C DG + V G
Sbjct: 207 LHEKR---VVSGSRDA-TLRVWDIETGQCLHVLMGHV---AAVRCV-QYDGRRVVSGAYD 258
Query: 414 GQFYQCDIEGQV-LDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
D E + L + +G + DG V++ IR ++ E + L
Sbjct: 259 FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-TG 317
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
H ++ ++ D + + + V +WD++ L+ QG + Q + +C N++FV
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-TCLQ-FNKNFV 375
Query: 533 ASGSEDGKVYIWHVK 547
+ S+DG V +W +K
Sbjct: 376 ITSSDDGTVKLWDLK 390
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWD---------VDPVTFTCQHRKT 342
E + H + V C+FSPD LA+ S D T+ +WD ++ F
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 799
Query: 343 LEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNR 402
E + V +WS D + ++V +++++++I T L +++ ++ C ++
Sbjct: 800 QEDMEVIVKCCSWSADGARIMVAAK---NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSP 856
Query: 403 DGTKFVCGGIRG--QFYQCDIEGQVLD-----SWEGVRVNCLWCRSDGKSVLAADTHHRI 455
V + + + D +V D SW V+ + DG S L + I
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSW----VHGVMFSPDGSSFLTSSDDQTI 912
Query: 456 RTYNFEHLT---------DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRIL 506
R + + + + +++ +++ VM +D RL L+N T +
Sbjct: 913 RLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDY-------- 964
Query: 507 LRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVA 566
+T+ Q + C + ++A G E+G + I + + H +TV +
Sbjct: 965 ------LTEAQ--VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 567 WNPVYHQMIASVSDDCTVRIWGPHLN 592
+ +I+S SDD +++W L+
Sbjct: 1017 FTADEKTLISS-SDDAEIQVWNWQLD 1041
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 126/310 (40%), Gaps = 45/310 (14%)
Query: 285 TKEEFPCETTQVL---NDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK 341
T + F ET + L H DEV C FS D +AT S D V IW+ + T +
Sbjct: 644 TLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN----SMTGELVH 699
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVV-GPEDCH-ELWVWNIETELLRVKLNHSPEDSLTSCS 399
T + H+ V ++ S HLL+ G DC +LW N + E H+ +S+ C
Sbjct: 700 TYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-QKECRNTMFGHT--NSVNHCR 756
Query: 400 WNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYN 459
++ D C +G L W+ N + KS+ ++ +
Sbjct: 757 FSPDDKLLA---------SCSADG-TLKLWDATSAN------ERKSI-------NVKQF- 792
Query: 460 FEHLTDSNLLQEDHPVMSFTID-ATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQF 518
F +L D QED V+ + D ++ + + L+D+ LL + T
Sbjct: 793 FLNLEDP---QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIH--TGHHS 847
Query: 519 TIHSC-FGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIAS 577
TI C F N V + S+ V +W+ +A GH V V ++P + S
Sbjct: 848 TIQYCDFSPQNHLAVVALSQYC-VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 578 VSDDCTVRIW 587
SDD T+R+W
Sbjct: 907 -SDDQTIRLW 915
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 122/300 (40%), Gaps = 24/300 (8%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
FSPDG T S D T+ +W+ V C++ + + V + + ++V+ +
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKV---CKNSAVMLKQEVDVVF-----QENEVMVLAVD 947
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDS 428
L + N T ++++ E ++ C + G G ++ +
Sbjct: 948 HIRRLQLINGRTG----QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQ 1003
Query: 429 WEGVRVNCLW---CRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDR 485
+W +D K+++++ I+ +N++ L V F + R
Sbjct: 1004 SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR 1063
Query: 486 LALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIW 544
L L+ S G V +W++ I K + Q T+ SC + +S S D IW
Sbjct: 1064 L--LSWSFDGTVKVWNI---ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Query: 545 HVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLASSLT 604
LP+ L GH V C A++ V ++A+ D+ +RIW +++ + HL + L+
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIW--NVSNGELLHLCAPLS 1175
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
TT+ H +V FS D ++ +GS+D T+ +W+ V C++ E H+ V+
Sbjct: 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTVQDESHSEWVSC 176
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDS-LTSCSWNRDGTKFVCGG 411
+ +SP+SS+ ++V + VWN+ ++K NH L + + + DG+ GG
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 412 IRGQFYQCDI-EGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
GQ D+ EG+ L + +G + C S + L A T I+ ++ E
Sbjct: 235 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
H V I + + AL + LWDL R+F G T+ ++ F N+ V
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIV 144
Query: 533 ASGSEDGKVYIWHVKRELPIATL-SGHTRTVSCVAWNP-VYHQMIASVSDDCTVRIW 587
SGS D + +W+ H+ VSCV ++P + +I S D V++W
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
TT+ H +V FS D ++ +GS+D T+ +W+ V C++ E H+ V+
Sbjct: 97 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTVQDESHSEWVSC 153
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDS-LTSCSWNRDGTKFVCGG 411
+ +SP+SS+ ++V + VWN+ ++K NH L + + + DG+ GG
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGSLCASGG 211
Query: 412 IRGQFYQCDI-EGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
GQ D+ EG+ L + +G + C S + L A T I+ ++ E
Sbjct: 212 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 262
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
H V I + + AL + LWDL R+F G T+ ++ F N+ V
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIV 121
Query: 533 ASGSEDGKVYIWHVKRELPIATL-SGHTRTVSCVAWNP-VYHQMIASVSDDCTVRIW 587
SGS D + +W+ H+ VSCV ++P + +I S D V++W
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 528 NQDFVASGSEDGKVYIWHVK--------RELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
N + +ASGSED V +W + RE P+ TL GHT+ V VAW+P ++ S
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLRE-PVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 580 DDCTVRIW 587
D + +W
Sbjct: 152 XDNVILVW 159
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 316 LATGSKDTTVIIWDVDPVTFTCQHRK---TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE 372
+A+GS+D TV++W++ R+ TLEGHT V +AW P + ++L+ D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD-NV 155
Query: 373 LWVWNIETELLRVKLNHSP-EDSLTSCSWNRDGTKFVCGGIR 413
+ VW++ T + L D++ S W+RDG +C R
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCR 196
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 510 FQGVTQGQFTIHSCFGGANQDFVA---SGSEDGKVYIW------HVKRELPIATLSGHTR 560
++ V Q T S F N F+A S G + V + +P+ + GHT
Sbjct: 25 YEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL--VXGHTA 82
Query: 561 TVSCVAWNPVYHQMIASVSDDCTVRIW 587
V +AW P +IAS S+DCTV +W
Sbjct: 83 PVLDIAWXPHNDNVIASGSEDCTVMVW 109
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 306 FCKFSPDGLKLAT-GSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLV 364
FC +P + L S ++ + ++ + GHT V +AW P + +++
Sbjct: 39 FCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIA 98
Query: 365 VGPEDCHELWVWNI 378
G EDC + VW I
Sbjct: 99 SGSEDC-TVMVWEI 111
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
FSPDG T S D T+ +W+ V C++ + + V + + +V+ +
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV---CKNSAIVLKQEIDVVF-----QENETMVLAVD 941
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-EGQVLD 427
+ L + +T ++++ PE ++ C + G G ++ +V
Sbjct: 942 NIRGLQLIAGKTG----QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 428 SWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNF------------EHLTDSNLLQEDH 473
S G + V + +DGK+++++ I+ +N+ E + D LLQ D
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DS 1056
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVA 533
++S++ D T V +W++ + R F T Q T+ SC ++ +
Sbjct: 1057 RLLSWSFDGT------------VKVWNVITGRIERDF---TCHQGTVLSCAISSDATKFS 1101
Query: 534 SGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S S D IW P+ L GH V C A++ + ++A+ D+ +RIW
Sbjct: 1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIW 1154
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)
Query: 285 TKEEFPCETTQVLND---HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK 341
T + F ET + L D H DEV C FS D +AT S D V IWD + T +
Sbjct: 638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD----SATGKLVH 693
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL-------NH---SP 391
T + H+ V ++ S+HLL+ + L +W++ + R + NH SP
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753
Query: 392 EDS-LTSCS-------WN-RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSD 442
+D L SCS W+ R + ++ F + + ++ V V C +D
Sbjct: 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE----VIVKCCSWSAD 809
Query: 443 GKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDAT-----DRLALLNVSTQGVH 497
G ++ A +++ ++ + S LL E H TI D LA++ +S V
Sbjct: 810 GDKIIVA-AKNKVLLFD---IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865
Query: 498 LWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR 548
LW++ R+ + +G +H + + S+D + +W K+
Sbjct: 866 LWNIDSRLKVADCRGHLSW---VHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 128/317 (40%), Gaps = 41/317 (12%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVT---------FTCQHRKT 342
E + H + V C+FSPD LA+ S D T+ +WDV F
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793
Query: 343 LEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL-----------NHSP 391
E + V +WS D ++V +++ +++I T L ++ + SP
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
Query: 392 EDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADT 451
D L + ++ + I + D G + SW V+ + DG S L A
Sbjct: 851 YDHLAVIALSQYCVEL--WNIDSRLKVADCRGHL--SW----VHGVMFSPDGSSFLTASD 902
Query: 452 HHRIRTYNFEHL-TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKF 510
IR + + + +S ++ + + F + T LA+ N+ +G+ L I +
Sbjct: 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI--RGLQL------IAGKTG 954
Query: 511 QGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPV 570
Q + + C + ++VA G EDG + I + ++ GH + V + +
Sbjct: 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 571 YHQMIASVSDDCTVRIW 587
+I+S S+D +++W
Sbjct: 1015 GKTLISS-SEDSVIQVW 1030
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
+N +A+GS D + +W + ++ T+ GHT +V+ ++P +++AS S D T+R+
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRL 769
Query: 587 W 587
W
Sbjct: 770 W 770
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAW-NPVYHQMIASVSDD 581
C ++ ++A+ S D KV IW + T H+ V+C + N H ++A+ S+D
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 582 CTVRIW 587
+++W
Sbjct: 723 FFLKLW 728
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 118/313 (37%), Gaps = 34/313 (10%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
V+ H D V+ FS DG ++A+ D T+ ++ + T + ++ H V A+
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE----TGEKLLDIKAHEDEVLCCAF 665
Query: 356 SPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
S D S++ + ++ +W+ T +L+ HS + + C + +
Sbjct: 666 SSDDSYIATCSAD--KKVKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSN 721
Query: 415 QFY-------QCDIEGQVLDSWEGVRVNCLW---------CRSDGK----SVLAADTHHR 454
F+ Q + + V +C + C +DG V +A+
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSPDDELLASCSADGTLRLWDVRSANERKS 780
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
I F L+ + ++ ++ + D ++ + V L+D+ LL + T
Sbjct: 781 INVKRF-FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--T 837
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQM 574
TI C V +W++ L +A GH V V ++P
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 575 IASVSDDCTVRIW 587
+ + SDD T+R+W
Sbjct: 898 L-TASDDQTIRVW 909
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVD--PVTFTCQHRKTLEG---HTLGVAYLAWSPDSSHLL 363
FS DG+ LATG + + IW+V + +C EG H V + +SPDS L+
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 364 VVGPEDCHELWVWNIET 380
G + W WN+ T
Sbjct: 1195 SAGG---YLKW-WNVAT 1207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
FSPDG T S D T+ +W+ V C++ + + V + + +V+ +
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV---CKNSAIVLKQEIDVVF-----QENETMVLAVD 948
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-EGQVLD 427
+ L + +T ++++ PE ++ C + G G ++ +V
Sbjct: 949 NIRGLQLIAGKTG----QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 428 SWEGVR--VNCLWCRSDGKSVLAADTHHRIRTYNF------------EHLTDSNLLQEDH 473
S G + V + +DGK+++++ I+ +N+ E + D LLQ D
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DS 1063
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVA 533
++S++ D T V +W++ + R F T Q T+ SC ++ +
Sbjct: 1064 RLLSWSFDGT------------VKVWNVITGRIERDF---TCHQGTVLSCAISSDATKFS 1108
Query: 534 SGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S S D IW P+ L GH V C A++ + ++A+ D+ +RIW
Sbjct: 1109 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIW 1161
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 42/291 (14%)
Query: 285 TKEEFPCETTQVLND---HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK 341
T + F ET + L D H DEV C FS D +AT S D V IWD + T +
Sbjct: 645 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD----SATGKLVH 700
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL-------NH---SP 391
T + H+ V ++ S+HLL+ + L +W++ + R + NH SP
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 760
Query: 392 EDS-LTSCS-------WN-RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSD 442
+D L SCS W+ R + ++ F + + ++ V V C +D
Sbjct: 761 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE----VIVKCCSWSAD 816
Query: 443 GKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDAT-----DRLALLNVSTQGVH 497
G ++ A +++ ++ + S LL E H TI D LA++ +S V
Sbjct: 817 GDKIIVA-AKNKVLLFD---IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 872
Query: 498 LWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR 548
LW++ R+ + +G +H + + S+D + +W K+
Sbjct: 873 LWNIDSRLKVADCRGHLSW---VHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 128/317 (40%), Gaps = 41/317 (12%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVT---------FTCQHRKT 342
E + H + V C+FSPD LA+ S D T+ +WDV F
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 800
Query: 343 LEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL-----------NHSP 391
E + V +WS D ++V +++ +++I T L ++ + SP
Sbjct: 801 PEDVEVIVKCCSWSADGDKIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 857
Query: 392 EDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADT 451
D L + ++ + I + D G + SW V+ + DG S L A
Sbjct: 858 YDHLAVIALSQYCVEL--WNIDSRLKVADCRGHL--SW----VHGVMFSPDGSSFLTASD 909
Query: 452 HHRIRTYNFEHL-TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKF 510
IR + + + +S ++ + + F + T LA+ N+ +G+ L I +
Sbjct: 910 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI--RGLQL------IAGKTG 961
Query: 511 QGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPV 570
Q + + C + ++VA G EDG + I + ++ GH + V + +
Sbjct: 962 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 571 YHQMIASVSDDCTVRIW 587
+I+S S+D +++W
Sbjct: 1022 GKTLISS-SEDSVIQVW 1037
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
+N +A+GS D + +W + ++ T+ GHT +V+ ++P +++AS S D T+R+
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRL 776
Query: 587 W 587
W
Sbjct: 777 W 777
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAW-NPVYHQMIASVSDD 581
C ++ ++A+ S D KV IW + T H+ V+C + N H ++A+ S+D
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 582 CTVRIW 587
+++W
Sbjct: 730 FFLKLW 735
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 118/313 (37%), Gaps = 34/313 (10%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
V+ H D V+ FS DG ++A+ D T+ ++ + T + ++ H V A+
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE----TGEKLLDIKAHEDEVLCCAF 672
Query: 356 SPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
S D S++ + ++ +W+ T +L+ HS + + C + +
Sbjct: 673 SSDDSYIATCSAD--KKVKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSN 728
Query: 415 QFY-------QCDIEGQVLDSWEGVRVNCLW---------CRSDGK----SVLAADTHHR 454
F+ Q + + V +C + C +DG V +A+
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSPDDELLASCSADGTLRLWDVRSANERKS 787
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
I F L+ + ++ ++ + D ++ + V L+D+ LL + T
Sbjct: 788 INVKRF-FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--T 844
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQM 574
TI C V +W++ L +A GH V V ++P
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 575 IASVSDDCTVRIW 587
+ + SDD T+R+W
Sbjct: 905 L-TASDDQTIRVW 916
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVD--PVTFTCQHRKTLEG---HTLGVAYLAWSPDSSHLL 363
FS DG+ LATG + + IW+V + +C EG H V + +SPDS L+
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 364 VVGPEDCHELWVWNIET 380
G + W WN+ T
Sbjct: 1202 SAGG---YLKW-WNVAT 1214
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 528 NQDFVASGSEDGKVYIWHVK--------RELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
N + +ASGSED V +W + RE P+ TL GHT+ V VAW+P ++ S
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLRE-PVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 580 DDCTVRIW 587
D + +W
Sbjct: 152 CDNVILVW 159
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 316 LATGSKDTTVIIWDVDPVTFTCQHRK---TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE 372
+A+GS+D TV++W++ R+ TLEGHT V +AW P + ++L+ D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-NV 155
Query: 373 LWVWNIETELLRVKLNHSP-EDSLTSCSWNRDGTKFVCGGIR 413
+ VW++ T + L D++ S W+RDG +C R
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCR 196
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 510 FQGVTQGQFTIHSCFGGANQDFVA---SGSEDGKVYIW------HVKRELPIATLSGHTR 560
++ V Q T S F N F+A S G + V + +P+ + GHT
Sbjct: 25 YEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--VCGHTA 82
Query: 561 TVSCVAWNPVYHQMIASVSDDCTVRIW 587
V +AW P +IAS S+DCTV +W
Sbjct: 83 PVLDIAWCPHNDNVIASGSEDCTVMVW 109
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 306 FCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE---GHTLGVAYLAWSPDSSHL 362
FC +P + L + + V P+ T + K + GHT V +AW P + ++
Sbjct: 39 FCAVNPKFMALICEASGGGAFL--VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV 96
Query: 363 LVVGPEDCHELWVWNI 378
+ G EDC + VW I
Sbjct: 97 IASGSEDC-TVMVWEI 111
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
+SP G LA+ S D T IW + F C TLEGH V +AW+P S +LL
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECV--TTLEGHENEVKSVAWAP-SGNLLATCSR 125
Query: 369 DCHELWVWNIETE 381
D +WVW ++ E
Sbjct: 126 D-KSVWVWEVDEE 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 528 NQDFVASGSEDGKVYIWHVKRE--LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+Q+ +AS S D V ++ + + + ATL GH TV +A++P Q +AS SDD TVR
Sbjct: 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVR 219
Query: 586 IWGPHLNTNK 595
IW +L N+
Sbjct: 220 IWRQYLPGNE 229
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 286 KEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPV-TFTCQHRKTLE 344
+++F C TT L H +EV ++P G LAT S+D +V +W+VD + C L
Sbjct: 92 QDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV--SVLN 147
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
HT V ++ W P L +D VKL ED C+
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDD--------------TVKLYREEEDDWVCCA 188
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHL 362
WF ++P G LA+ D + IW + ++ C+ + EGH V +AWSP ++L
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYL 76
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 557 GHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
H++ V+CVAWNP ++AS SDD V W
Sbjct: 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
L H VW F P G +LA+ S D TV IW R+ L G+ GVA
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW-----------RQYLPGNEQGVA 233
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 287 EEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGH 346
EE E VLN H +V + P LA+ S D TV ++ + + C TLEGH
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC--ATLEGH 193
Query: 347 TLGVAYLAWSPDSSHLLVVGPEDCHELW 374
V LA+ P L + +W
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 24/238 (10%)
Query: 287 EEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWD-VDPVTFTCQHRKTLE- 344
E P + +H V +++PDG A+ D T+++++ VD +L+
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 345 -GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLR--VKLNHSPEDSLTSCSWN 401
H+ V L WSPD + + + + +WN+ T + + + ED W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKT--IKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293
Query: 402 RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVR------VNCLWCRSDGKSVLAADTHHRI 455
+ + F + L S + VR + L +DGK++ +AD I
Sbjct: 294 KQALVSISANGFINFVNPE-----LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348
Query: 456 RTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGV 513
+++ + + + H M I T + L VS WD +++ GV
Sbjct: 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS------WDDHLKVVPAGGSGV 400
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD 331
H +V +SPD ++LATGS D +VI+W+++
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H E+ FS +G L + VI + V F H + HT VA ++WSPD+
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 360 SHLLVVGPEDCHELWVWNIE 379
L G D + + VWN+
Sbjct: 549 VR-LATGSLD-NSVIVWNMN 566
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
T++ +H + K SP G A+G V IWD T + T+ + V +
Sbjct: 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL--KTTIPVFSGPVKDI 109
Query: 354 AWSPDSSHLLVVG 366
+W +S + VG
Sbjct: 110 SWDSESKRIAAVG 122
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 433 RVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVS 492
+V CL DG S++ + +R +N + L P++S + D ++++
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK-DGTHIISMD 168
Query: 493 TQGVH-LWDLRDRILLRKFQGVTQGQFTI----HSCFGGANQD--------FVASGSEDG 539
+ V LW++ +++ F+ G +I HS G D FV G + G
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-G 227
Query: 540 KVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++++ + + P L GH +S + +N ++++ S SDD T+RIW
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIW 274
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 95/253 (37%), Gaps = 56/253 (22%)
Query: 332 PVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRV-KLNHS 390
P + KT T V LAWS D + + V G E+ EL +WN LL V + +
Sbjct: 97 PFALSASSGKT----TNQVTCLAWSHDGNSI-VTGVENG-ELRLWNKTGALLNVLNFHRA 150
Query: 391 PEDSLTSCSWNRDGTKFVCGGIRGQFYQCD-IEGQVLDSWE-----GVRVNCLWCRSDGK 444
P + S WN+DGT + + + I G V+ +E G +N DG
Sbjct: 151 P---IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 445 SVLAADTH-------------HRIRTYNFEHLTDSNLLQEDH-PVMSFTIDATDRLALLN 490
L D I Y T + L H P+ + T++L LL+
Sbjct: 208 --LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLS 264
Query: 491 VSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ----------DFVASGSEDGK 540
S G LR + G G +CF G +Q D V S S DG
Sbjct: 265 ASDDGT----------LRIWHG---GNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGS 311
Query: 541 VYIWHVKRELPIA 553
V +W +K+ +A
Sbjct: 312 VRLWSLKQNTLLA 324
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH--RKTLEGHTLGV 350
+T+ H +V FS D ++ + S+D T+ +W+ C++ + EGH V
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN---TLGECKYTISEGGEGHRDWV 520
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL-NHSPEDSLTSCSWNRDGTKFVC 409
+ + +SP++ +V + VWN+ LR L H+ S + S DG+
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS--PDGSLCAS 578
Query: 410 GGIRGQFYQCDI-EGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
GG G D+ EG+ L S E V C S + L A T H I+ ++ E
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLE 631
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 509 KFQGVTQGQFTIHSCFG-----GANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVS 563
K GV Q + T HS F ++ F SGS DG++ +W + + GHT+ V
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL 476
Query: 564 CVAWNPVYHQMIASVSDDCTVRIW 587
VA++ + ++ I S S D T+++W
Sbjct: 477 SVAFS-LDNRQIVSASRDRTIKLW 499
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 468 LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGA 527
L H V + + + AL + LWDL + R+F G T+ ++ F
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV--AFSLD 483
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLS----GHTRTVSCVAWNP-VYHQMIASVSDDC 582
N+ V S S D + +W+ E T+S GH VSCV ++P I S S D
Sbjct: 484 NRQIV-SASRDRTIKLWNTLGECKY-TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 583 TVRIW 587
TV++W
Sbjct: 542 TVKVW 546
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK--TLEGHTL 348
C+ L H V SPDG A+G KD V++WD+ + +K +LE +++
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL------AEGKKLYSLEANSV 604
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSPEDS---------- 394
+ L +SP+ + L E H + +W++E+ E L+V L E +
Sbjct: 605 -IHALCFSPN-RYWLCAATE--HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 395 ----LTSCSWNRDGTKFVCG 410
TS +W+ DG+ G
Sbjct: 661 KVIYCTSLNWSADGSTLFSG 680
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
Q + S S D V +W++ +TL+GHT VS VA +P + AS D V +W
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLW 588
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 446 VLAADTHHRIRTYNF---EHLTDSNLLQEDHP--VMSFTIDATDRLALLNVSTQGVHLWD 500
++ RIR +N+ E + D E HP + S + T L V LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 501 LRDRILLRK-FQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGH 558
+ L + F+G F + F + ASG D V +W + + P TL +G
Sbjct: 126 WENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 559 TRTVSCVAWNPVYHQ-MIASVSDDCTVRIW 587
R V+ V + P+ + + + SDD T++IW
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ ++ + S+D + IW + + +ATL GH VS ++P +I S S+D T++IW
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 311 PDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDC 370
PD + T S D T+ IWD T +C TLEGH V++ + P + +++ G ED
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ--TKSCV--ATLEGHMSNVSFAVFHP-TLPIIISGSEDG 250
Query: 371 HELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
L +WN T + LN E S + ++ G F
Sbjct: 251 -TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 446 VLAADTHHRIRTYNF---EHLTDSNLLQEDHP--VMSFTIDATDRLALLNVSTQGVHLWD 500
++ RIR +N+ E + D E HP + S + T L V LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 501 LRDRILLRK-FQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGH 558
+ L + F+G F + F + ASG D V +W + + P TL +G
Sbjct: 126 WENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 559 TRTVSCVAWNPVYHQ-MIASVSDDCTVRIW 587
R V+ V + P+ + + + SDD T++IW
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ ++ + S+D + IW + + +ATL GH VS ++P +I S S+D T++IW
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 311 PDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDC 370
PD + T S D T+ IWD T +C TLEGH V++ + P + +++ G ED
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ--TKSCV--ATLEGHMSNVSFAVFHP-TLPIIISGSEDG 250
Query: 371 HELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
L +WN T + LN E S + ++ G F
Sbjct: 251 -TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 446 VLAADTHHRIRTYNF---EHLTDSNLLQEDHP--VMSFTIDATDRLALLNVSTQGVHLWD 500
++ RIR +N+ E + D E HP + S + T L V LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 501 LRDRILLRK-FQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGH 558
+ L + F+G F + F + ASG D V +W + + P TL +G
Sbjct: 126 WENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 559 TRTVSCVAWNPVYHQ-MIASVSDDCTVRIW 587
R V+ V + P+ + + + SDD T++IW
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ ++ + S+D + IW + + +ATL GH VS ++P +I S S+D T++IW
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 311 PDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDC 370
PD + T S D T+ IWD T +C TLEGH V++ + P + +++ G ED
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ--TKSCV--ATLEGHMSNVSFAVFHP-TLPIIISGSEDG 250
Query: 371 HELWVWNIETELLRVKLNHSPEDS 394
L +WN T + LN E S
Sbjct: 251 -TLKIWNSSTYKVEKTLNVGLERS 273
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 446 VLAADTHHRIRTYNF---EHLTDSNLLQEDHP--VMSFTIDATDRLALLNVSTQGVHLWD 500
++ RIR +N+ E + D E HP + S + T L V LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDF----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 501 LRDRILLRK-FQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGH 558
+ L + F+G F + F + ASG D V +W + + P TL +G
Sbjct: 126 WENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 559 TRTVSCVAWNPVYHQ-MIASVSDDCTVRIW 587
R V+ V + P+ + + + SDD T++IW
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ ++ + S+D + IW + + +ATL GH VS ++P +I S S+D T++IW
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 311 PDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDC 370
PD + T S D T+ IWD T +C TLEGH V++ + P + +++ G ED
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ--TKSCV--ATLEGHMSNVSFAVFHP-TLPIIISGSEDG 250
Query: 371 HELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
L +WN T + LN E S + ++ G F
Sbjct: 251 -TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
L+ H EV +++PDG LA+G D V +W P +T H V +AW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 356 SPDSSHLLVV--GPEDCHELWVWNI 378
P S++L G D H + +WN+
Sbjct: 296 CPWQSNVLATGGGTSDRH-IRIWNV 319
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 468 LLQEDHP---VMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
LLQ + P + S + S+ V LWD++ + LR T HS
Sbjct: 151 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSHSAR 202
Query: 525 GGA---NQDFVASGSEDGKVYIWHVK-RELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
G+ N ++SGS G ++ V+ E +ATLSGH++ V + W P + +AS +
Sbjct: 203 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGN 261
Query: 581 DCTVRIW 587
D V +W
Sbjct: 262 DNLVNVW 268
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL 555
V+LW +L+ Q G++ I S +++A G+ +V +W V+++ + +
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 556 SGHTRTVSCVAWN 568
+ H+ V ++WN
Sbjct: 197 TSHSARVGSLSWN 209
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 333 VTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
V H TL GH+ V L W+PD HL G ++ +W
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L+ H EV +++PDG LA+G D V +W P +T H V +AW
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 357 PDSSHLLVV--GPEDCHELWVWNI 378
P S++L G D H + +WN+
Sbjct: 286 PWQSNVLATGGGTSDRH-IRIWNV 308
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 468 LLQEDHP---VMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
LLQ + P + S + S+ V LWD++ + LR T HS
Sbjct: 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSHSAR 191
Query: 525 GGA---NQDFVASGSEDGKVYIWHVK-RELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
G+ N ++SGS G ++ V+ E +ATLSGH++ V + W P + +AS +
Sbjct: 192 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGN 250
Query: 581 DCTVRIW 587
D V +W
Sbjct: 251 DNLVNVW 257
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL 555
V+LW +L+ Q G++ I S +++A G+ +V +W V+++ + +
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 556 SGHTRTVSCVAWN 568
+ H+ V ++WN
Sbjct: 186 TSHSARVGSLSWN 198
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 333 VTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
V H TL GH+ V L W+PD HL G ++ +W
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F +H + N+ +AS D ++ +W + +
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ P L GHT +S +WNP +I SVS+D ++IW
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 534 SGSEDGKVYIWHVK---RELPI----ATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
S S+D V +W + +E I A +GH+ V VAW+ ++ + SV+DD + I
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMI 256
Query: 587 WGPHLNTNKSP-HLASSLT 604
W NT P HL + T
Sbjct: 257 WDTRSNTTSKPSHLVDAHT 275
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 22/141 (15%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
T+ + + +++ H EV F+P LATGS D TV +WD+ + T
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---TF 315
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET---------------ELLRVKLN 388
E H + + WSP + +L D L VW++ ELL +
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 389 HSPEDSLTSCSWNRDGTKFVC 409
H+ + ++ SWN + +C
Sbjct: 375 HTAK--ISDFSWNPNEPWVIC 393
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F +H + N+ +AS D ++ +W + +
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVH--WSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ P L GHT +S +WNP +I SVS+D +IW
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 534 SGSEDGKVYIWHVK---RELPI----ATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
S S+D V +W + +E I A +GH+ V VAW+ ++ + SV+DD + I
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXI 256
Query: 587 WGPHLNTNKSP-HLASSLT 604
W NT P HL + T
Sbjct: 257 WDTRSNTTSKPSHLVDAHT 275
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 22/141 (15%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
T+ + + +++ H EV F+P LATGS D TV +WD+ + T
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---TF 315
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET---------------ELLRVKLN 388
E H + + WSP + +L D L VW++ ELL +
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 389 HSPEDSLTSCSWNRDGTKFVC 409
H+ + ++ SWN + +C
Sbjct: 375 HTAK--ISDFSWNPNEPWVIC 393
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 528 NQDFVASGSEDGKVYIWHVKREL---PIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
++ S ++D K+ IW + P + HT V+C+++NP ++A+ S D TV
Sbjct: 241 HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 585 RIW 587
+W
Sbjct: 301 ALW 303
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F + + N+ +AS D ++++W + +
Sbjct: 304 VALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW--GPHLNTNKSPH 598
+ P L GHT +S +WNP +I SVS+D +++W ++ ++ P
Sbjct: 362 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPE 421
Query: 599 LASS 602
+ +S
Sbjct: 422 IPAS 425
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 529 QDFVASGSEDGKVYIWHVKRE---LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ S ++D K+ IW + P T+ HT V+C+++NP ++A+ S D TV
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 586 IW 587
+W
Sbjct: 306 LW 307
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 531 FVASGSEDGKVYIWHVK---RELPIA----TLSGHTRTVSCVAWNPVYHQMIASVSDDCT 583
++ S S+D + +W + +E + +GHT V VAW+ ++ + SV+DD
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 584 VRIWGPHLNTNKSP 597
+ IW N P
Sbjct: 258 LMIWDTRNNNTSKP 271
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F + + N+ +AS D ++++W + +
Sbjct: 302 VALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW--GPHLNTNKSPH 598
+ P L GHT +S +WNP +I SVS+D +++W ++ ++ P
Sbjct: 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPE 419
Query: 599 LASS 602
+ +S
Sbjct: 420 IPAS 423
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 529 QDFVASGSEDGKVYIWHVKRE---LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ S ++D K+ IW + P T+ HT V+C+++NP ++A+ S D TV
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 586 IW 587
+W
Sbjct: 304 LW 305
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 531 FVASGSEDGKVYIWHVK---RELPIA----TLSGHTRTVSCVAWNPVYHQMIASVSDDCT 583
++ S S+D + +W + +E + +GHT V VAW+ ++ + SV+DD
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 584 VRIWGPHLNTNKSP 597
+ IW N P
Sbjct: 256 LMIWDTRNNNTSKP 269
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 475 VMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVAS 534
V + D + +L + + LWD + +R G + S N D + S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG---HDHNVSSVSIMPNGDHIVS 209
Query: 535 GSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S D + +W V+ + T +GH V V N +IAS S+D TVR+W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVW 261
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 33/238 (13%)
Query: 289 FPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
F C T +DH V P+G + + S+D T+ +W+V T C KT GH
Sbjct: 182 FECIRTMHGHDH--NVSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGYCV--KTFTGHRE 235
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNH----------SPEDSLTSC 398
V + P+ L+ + + VW + T+ + +L +PE S +S
Sbjct: 236 WVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCL--------WCR-----SDGKS 445
S G++ G G F + + W+ CL W R S GK
Sbjct: 294 S-EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 446 VLAADTHHRIRTYNFEHLTDSNLLQ-EDHPVMSFTIDATDRLALLNVSTQGVHLWDLR 502
+L+ +R +++++ L +H V S T + Q V +W+ R
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L H D V F G LA+ S D T+ +WD F C +T+ GH V+ ++
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECI--RTMHGHDHNVSSVS 199
Query: 355 WSPDSSHLLVVGPEDCHELW 374
P+ H++ + ++W
Sbjct: 200 IMPNGDHIVSASRDKTIKMW 219
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 526 GANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH---QMIASVSDDC 582
G F+ SGS D + +W V + + TL GH V V ++H + I S +DD
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGKFILSCADDK 360
Query: 583 TVRIW 587
T+R+W
Sbjct: 361 TLRVW 365
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 443 GKSVLAADTHHRIRTYNFEHLTDSNLLQ-EDHPVMSFTIDATDRLALLNVSTQGVHLWDL 501
GK + + I+ ++F+ + DH V S +I + + + +W++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 502 RDRILLRKFQGVTQGQFTIHSCFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHT 559
+ ++ F G + + NQD +AS S D V +W V + A L H
Sbjct: 222 QTGYCVKTFTGHREWVRMVR-----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 560 RTVSCVAWNP 569
V C++W P
Sbjct: 277 HVVECISWAP 286
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
HPV S + A++ + +WD R +G T I G +
Sbjct: 117 HPVFSVMVSASEDAT--------IKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LL 165
Query: 533 ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
AS S D + +W + I T+ GH VS V+ P I S S D T+++W
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMW 219
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 505 ILLRKFQGVTQGQ---FTIHSCFGGANQDFVASG----SEDGKVYIWHVKRELPIATLSG 557
+L +K+ V + Q + S A ++F + G D K +I R LSG
Sbjct: 50 LLEKKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWI---PRPPEKYALSG 106
Query: 558 HTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
H V+ V ++PV+ M+ S S+D T+++W
Sbjct: 107 HRSPVTRVIFHPVFSVMV-SASEDATIKVW 135
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F + + N+ +AS D ++++W + +
Sbjct: 306 VALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ P L GHT +S +WNP +I SVS+D +++W
Sbjct: 364 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 529 QDFVASGSEDGKVYIWHVKRE---LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ S ++D K+ IW + P T+ HT V+C+++NP ++A+ S D TV
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 586 IW 587
+W
Sbjct: 308 LW 309
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 531 FVASGSEDGKVYIWHVK---RELPIA----TLSGHTRTVSCVAWNPVYHQMIASVSDDCT 583
++ S S+D + +W + +E + +GHT V VAW+ ++ + SV+DD
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 584 VRIWGPHLNTNKSP 597
+ IW N P
Sbjct: 260 LMIWDTRNNNTSKP 273
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L+ H EV +++PDG LA+G D V +W P +T H V +AW
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 357 PDSSHLLVV--GPEDCHELWVWNI 378
P S++L G D H + +WN+
Sbjct: 206 PWQSNVLATGGGTSDRH-IRIWNV 228
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 468 LLQEDHP---VMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
LLQ + P + S + S+ V LWD++ + LR T HS
Sbjct: 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSHSAR 111
Query: 525 GGA---NQDFVASGSEDGKVYIWHVK-RELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
G+ N ++SGS G ++ V+ E +ATLSGH++ V + W P + +AS +
Sbjct: 112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGN 170
Query: 581 DCTVRIW 587
D V +W
Sbjct: 171 DNLVNVW 177
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL 555
V+LW +L+ Q G++ I S +++A G+ +V +W V+++ + +
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105
Query: 556 SGHTRTVSCVAWN 568
+ H+ V ++WN
Sbjct: 106 TSHSARVGSLSWN 118
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 339 HRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
H TL GH+ V L W+PD HL G ++ +W
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 276 VSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTF 335
VS+ F + ++ H +EV +S DG LAT S+D +V IW+ D
Sbjct: 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141
Query: 336 TCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
+ L+ H+ V ++ W P + L +D +W
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 531 FVASGSEDGKVYIWHVKRELP----IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
++A+ S D V+IW I+ L H++ V V W+P ++AS S D TVRI
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRI 179
Query: 587 WGPH 590
W +
Sbjct: 180 WKDY 183
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H EV + DGL+LA+G D V IWD + + T H V +AW
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWC 268
Query: 357 PDSSHLLVVGPEDC-HELWVWNIET 380
P S+LL G ++ WN T
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAAT 293
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 15/239 (6%)
Query: 358 DSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFY 417
D S+L VV ++VWN ++ + + S W+ DG+ G G
Sbjct: 100 DWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159
Query: 418 QCDIEGQV-LDSWEG--VRVNCL-WCR---SDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
D+E Q L + G RV CL W R S G S A HH +R N + T LQ
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG-SRSGAIHHHDVRIANHQIGT----LQ 214
Query: 471 EDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ 529
+ +D L L + V +WD R I + C +N
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 530 DFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS-DDCTVRIW 587
G+ D +++ W+ + T+ ++ S + W+P +++++ D + IW
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI-WSPHSKEIMSTHGFPDNNLSIW 332
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
+SPDG LA+G+ D + I+D+ T + TLEGH + + L +SPD S LLV +
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASD 226
Query: 369 DCH 371
D +
Sbjct: 227 DGY 229
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
L H + FSPD L T S D + I+DV TL GH V +A+
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA----GTLSGHASWVLNVAFC 257
Query: 357 PDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
PD +H + + ++W T + +H +D + +N +G+K V G
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRT-CVHTFFDH--QDQVWGVKYNGNGSKIVSVG 309
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 514 TQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQ 573
T+G+F + + + ++ASG+ DG + I+ + + TL GH + + ++P Q
Sbjct: 162 TRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD-SQ 219
Query: 574 MIASVSDDCTVRIW 587
++ + SDD ++I+
Sbjct: 220 LLVTASDDGYIKIY 233
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 101/277 (36%), Gaps = 56/277 (20%)
Query: 300 HCDEVWFCKFSPDGLK----LATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
H D +W + + + + TGS D V +W Q +LEGH LGV
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW--SLEGHQLGVV---- 84
Query: 356 SPDSSHLLVVGPE---DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
S D SH L + D H + +W++E ++ P D+ T +++ D G
Sbjct: 85 SVDISHTLPIAASSSLDAH-IRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQYLATGTH 142
Query: 413 RGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
G +VN S GK + DT + + + D L
Sbjct: 143 VG------------------KVNIFGVES-GKKEYSLDTRGKF-ILSIAYSPDGKYL--- 179
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
S ID ++++D+ LL +G I S + +
Sbjct: 180 ---ASGAIDGI------------INIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLL 221
Query: 533 ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP 569
+ S+DG + I+ V+ TLSGH V VA+ P
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR------ 548
V LWDLR+ ++ L F+ F + + N+ +AS D ++ +W + +
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Query: 549 -----ELPIATL---SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ P L GHT +S +WNP +I SVS+D +++W
Sbjct: 356 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
T+ + + ++ H EV F+P LATGS D TV +WD+ + +
Sbjct: 257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---SF 313
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDS 394
E H + + WSP + +L D L VW +L ++ SPED+
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTD-RRLNVW----DLSKIGEEQSPEDA 359
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 529 QDFVASGSEDGKVYIWHVKRE---LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ S ++D K+ IW + P ++ HT V+C+++NP ++A+ S D TV
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 586 IW 587
+W
Sbjct: 300 LW 301
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 534 SGSEDGKVYIWH---VKRELPIA----TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
S S+D + +W V +E + +GHT V V+W+ ++ + SV+DD + I
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMI 254
Query: 587 WGPHLNTNKSP 597
W N P
Sbjct: 255 WDTRSNNTSKP 265
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 468 LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGA 527
L +H V + + A+ + + + LWDLR ++F G +++ F
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV--AFSPD 129
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATL--SGHTRTVSCVAWNPV---------YHQMIA 576
N+ +++G+E ++ +W++ E ++ H+ VSCV ++P+ + A
Sbjct: 130 NRQILSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 577 SVSDDCTVRIWGPHLNTN 594
SV D +++W NTN
Sbjct: 189 SVGWDGRLKVW----NTN 202
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 310 SPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPED 369
SP+G +ATG KD ++IWD+ + T R+ G T+ +A++P + VG +
Sbjct: 222 SPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTIN--QIAFNPK-LQWVAVGTDQ 276
Query: 370 CHELW---------VWNIETE-LLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG 414
+++ V IE E + + + TS +WN G K G G
Sbjct: 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 318 TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWN 377
+ S D T+ +WD+ T K GH V +A+SPD+ +L G E E+ +WN
Sbjct: 93 SSSWDKTLRLWDLR----TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE--REIKLWN 146
Query: 378 IETE 381
I E
Sbjct: 147 ILGE 150
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 22/240 (9%)
Query: 329 DVDPV-TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
++DPV + R+TL GH + + W D S LLV +D +L +W+ T K+
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQD-GKLIIWDSYTT---NKV 101
Query: 388 NHSPEDS--LTSCSWNRDGTKFVCGGIRG--QFYQCDI-EGQVLDSWEGV----RVNCLW 438
+ P S + +C++ G CGG+ Y EG V S E ++C
Sbjct: 102 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-- 159
Query: 439 CRS-DGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGV 496
CR D ++ + ++ E + VMS ++ RL +
Sbjct: 160 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 497 HLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS 556
LWD+R+ + + F G I CF N + A+GS+D ++ ++ + + T S
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAI--CF-FPNGNAFATGSDDATCRLFDLRADQELMTYS 276
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 23/253 (9%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
V C ++P G +A G D I+++ + + L GHT ++ + D+ +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-E 422
G C +W+IET D + S S D FV G D+ E
Sbjct: 171 SSGDTTCA---LWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 423 GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH----- 473
G ++ G + C + + + + D R+ F+ D L+ H
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----FDLRADQELMTYSHDNIIC 282
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF-V 532
+ S + + RL L ++WD L GV G SC G + V
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAV 338
Query: 533 ASGSEDGKVYIWH 545
A+GS D + IW+
Sbjct: 339 ATGSWDSFLKIWN 351
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H +V +PD +G+ D + +WDV R+T GH + + + P+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG 249
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPED---SLTSCSWNRDGTKFVCGGIRGQF 416
+ + L+ + EL + +S ++ +TS S+++ G + G
Sbjct: 250 NAFATGSDDATCRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAG---YDD 302
Query: 417 YQCDIEGQVLDSWEGV------RVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ C++ + GV RV+CL DG +V ++ +N
Sbjct: 303 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 22/240 (9%)
Query: 329 DVDPV-TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
++DPV + R+TL GH + + W D S LLV +D +L +W+ T K+
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQD-GKLIIWDSYTT---NKV 90
Query: 388 NHSPEDS--LTSCSWNRDGTKFVCGGIRG--QFYQCDI-EGQVLDSWEGV----RVNCLW 438
+ P S + +C++ G CGG+ Y EG V S E ++C
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-- 148
Query: 439 CRS-DGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGV 496
CR D ++ + ++ E + VMS ++ RL +
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 497 HLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS 556
LWD+R+ + + F G I CF N + A+GS+D ++ ++ + + T S
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAI--CF-FPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 23/253 (9%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
V C ++P G +A G D I+++ + + L GHT ++ + D+ +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-E 422
G C +W+IET D + S S D FV G D+ E
Sbjct: 160 SSGDTTCA---LWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 423 GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH----- 473
G ++ G + C + + + + D R+ F+ D L+ H
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----FDLRADQELMTYSHDNIIC 271
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF-V 532
+ S + + RL L ++WD L GV G SC G + V
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 533 ASGSEDGKVYIWH 545
A+GS D + IW+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H +V +PD +G+ D + +WDV R+T GH + + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG 238
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPED---SLTSCSWNRDGTKFVCGGIRGQF 416
+ + L+ + EL + +S ++ +TS S+++ G + G
Sbjct: 239 NAFATGSDDATCRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAG---YDD 291
Query: 417 YQCDIEGQVLDSWEGV------RVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ C++ + GV RV+CL DG +V ++ +N
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 22/240 (9%)
Query: 329 DVDPV-TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
++DPV + R+TL GH + + W D S LLV +D +L +W+ T K+
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQD-GKLIIWDSYTT---NKV 90
Query: 388 NHSPEDS--LTSCSWNRDGTKFVCGGIRG--QFYQCDI-EGQVLDSWEGV----RVNCLW 438
+ P S + +C++ G CGG+ Y EG V S E ++C
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-- 148
Query: 439 CRS-DGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGV 496
CR D ++ + ++ E + VMS ++ RL +
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 497 HLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS 556
LWD+R+ + + F G I CF N + A+GS+D ++ ++ + + T S
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAI--CF-FPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 23/253 (9%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
V C ++P G +A G D I+++ + + L GHT ++ + D+ +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-E 422
G C +W+IET D + S S D FV G D+ E
Sbjct: 160 SSGDTTCA---LWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 423 GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH----- 473
G ++ G + C + + + + D R+ F+ D L+ H
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----FDLRADQELMTYSHDNIIC 271
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF-V 532
+ S + + RL L ++WD L GV G SC G + V
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 533 ASGSEDGKVYIWH 545
A+GS D + IW+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H +V +PD +G+ D + +WDV R+T GH + + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG 238
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPED---SLTSCSWNRDGTKFVCGGIRGQF 416
+ + L+ + EL + +S ++ +TS S+++ G + G
Sbjct: 239 NAFATGSDDATCRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAG---YDD 291
Query: 417 YQCDIEGQVLDSWEGV------RVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ C++ + GV RV+CL DG +V ++ +N
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 135/348 (38%), Gaps = 77/348 (22%)
Query: 257 LQKYHCPYHNTKVDESLEN-----VSLLVDH---LCTKEEFPCETTQVLNDHCDEVWFCK 308
LQ+ HC +K L+ VS L D+ + K C+ ++L H V +
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQ 180
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
+ D + TGS D+TV +WDV+ T + TL H V +L + ++ ++V +
Sbjct: 181 Y--DERVIITGSSDSTVRVWDVN----TGEMLNTLIHHCEAVLHLRF---NNGMMVTCSK 231
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDS 428
D + VW++ SP D + V G R D + + + S
Sbjct: 232 D-RSIAVWDMA----------SPTDIT---------LRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 429 WEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLAL 488
G R +W S T +RT N H + DRL +
Sbjct: 272 ASGDRTIKVWNTS---------TCEFVRTLN------------GHKRGIACLQYRDRLVV 310
Query: 489 LNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR 548
S + LWD+ LR V +G + C N+ V SG+ DGK+ +W +
Sbjct: 311 SGSSDNTIRLWDIECGACLR----VLEGHEELVRCIRFDNKRIV-SGAYDGKIKVWDLVA 365
Query: 549 ELP---------IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
L + TL H+ V + ++ Q+++S DD T+ IW
Sbjct: 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDD-TILIW 410
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 510 FQGVTQGQF-TIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWN 568
F GV +G ++ + G N V SGS D + +W V + + LSGHT + ++
Sbjct: 262 FVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYD 319
Query: 569 PVYHQMIASVSDDCTVRIW 587
+ I S S D T+RIW
Sbjct: 320 HERKRCI-SASXDTTIRIW 337
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 484 DRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYI 543
D + + + ++D ++ L + G G + + GG + SGS D V +
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRV 187
Query: 544 WHVKRELPIATLSGHTRTVSC---VAWNPVYHQMIASVSDDCTVRIW 587
W +K+ GH TV C V + + + I + S D T+ +W
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNI--KYIVTGSRDNTLHVW 232
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL-AW 355
L+ H VW K++ G+ L +GS D TV +WD+ C H EGH V L
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKG--CCTH--VFEGHNSTVRCLDIV 212
Query: 356 SPDSSHLLVVGPEDCHELWVWNIETE 381
+ +V G D + L VW + E
Sbjct: 213 EYKNIKYIVTGSRD-NTLHVWKLPKE 237
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
+L+ H D ++ + + + + S DTT+ IWD++ + TL+GHT V L
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE----NGELXYTLQGHTALVGLLRL 360
Query: 356 S 356
S
Sbjct: 361 S 361
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 510 FQGVTQGQF-TIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWN 568
F GV +G ++ + G N V SGS D + +W V + + LSGHT + ++
Sbjct: 262 FVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 319
Query: 569 PVYHQMIASVSDDCTVRIW 587
+ I S S D T+RIW
Sbjct: 320 HERKRCI-SASMDTTIRIW 337
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 484 DRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYI 543
D + + + ++D ++ L + G G + + GG + SGS D V +
Sbjct: 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRV 187
Query: 544 WHVKRELPIATLSGHTRTVSC---VAWNPVYHQMIASVSDDCTVRIW 587
W +K+ GH TV C V + + + I + S D T+ +W
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNI--KYIVTGSRDNTLHVW 232
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 98/264 (37%), Gaps = 60/264 (22%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL-AW 355
L+ H VW K++ G+ L +GS D TV +WD+ C H EGH V L
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKG--CCTH--VFEGHNSTVRCLDIV 212
Query: 356 SPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
+ +V G D + L VW + E +H E + + G +RG
Sbjct: 213 EYKNIKYIVTGSRD-NTLHVWKLPKE--SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 416 FYQCDI---EGQVLDS---------WEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHL 463
G ++ S W+ ++ CL+ +L+ T RI + ++H
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY-------ILSGHT-DRIYSTIYDH- 320
Query: 464 TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSC 523
E +S ++D T R +WDL + L+ QG H+
Sbjct: 321 -------ERKRCISASMDTTIR------------IWDLENGELMYTLQG--------HTA 353
Query: 524 FGG---ANQDFVASGSEDGKVYIW 544
G + F+ S + DG + W
Sbjct: 354 LVGLLRLSDKFLVSAAADGSIRGW 377
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
+L+ H D ++ + + + + S DTT+ IWD++ + TL+GHT V L
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRL 360
Query: 356 S 356
S
Sbjct: 361 S 361
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H +V FSPD ++ +G +D + +W+V C H + HT V+ + +SP
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG---ECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQC 419
++V + + VW++ T L L + +TS + + DG+ G
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLK-GHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 420 DI-EGQVLDSW-EGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
D+ +G+ L G +N + C S + + A T IR ++ E+
Sbjct: 224 DLTKGEALSEMAAGAPINQI-CFSPNRYWMCAATEKGIRIFDLEN 267
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 18/248 (7%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
S +G + S D ++ +W++ CQ++ GHT V +A+SPD+ ++ G +
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQ--NGQCQYK--FLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSC---SWNRDGTKFVCGGIRGQFYQCDIE-GQ 424
+ L VWN++ E + L+ SC S + D V GG D+ G+
Sbjct: 131 NA--LRVWNVKGECMHT-LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 425 VLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDA 482
++ +G V + DG ++D R ++ + + P+ +
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF-S 246
Query: 483 TDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTI----HSCFGGANQDFVASGSED 538
+R + + +G+ ++DL ++ ++ + QG I S A+ + SG D
Sbjct: 247 PNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTD 306
Query: 539 GKVYIWHV 546
+ +W V
Sbjct: 307 NVIRVWGV 314
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 2/148 (1%)
Query: 441 SDGKSVLAADTHHRIRTYNFEH-LTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLW 499
++G ++A H +R +N ++ L V+S +R + + +W
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 500 DLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHT 559
+++ + +G + + + SG D V +W + + L GHT
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 560 RTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V+ V +P + AS D R+W
Sbjct: 197 NYVTSVTVSP-DGSLCASSDKDGVARLW 223
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 22/240 (9%)
Query: 329 DVDPV-TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
++DPV + R+TL GH + + W D S LL+ +D +L +W+ T K+
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQD-GKLIIWDSYTT---NKV 90
Query: 388 NHSPEDS--LTSCSWNRDGTKFVCGGIRG--QFYQCDI-EGQVLDSWEGV----RVNCLW 438
+ P S + +C++ G CGG+ Y EG V S E ++C
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-- 148
Query: 439 CRS-DGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGV 496
CR D ++ + ++ E + VMS ++ RL +
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 497 HLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS 556
LWD+R+ + + F G I CF N + A+GS+D ++ ++ + + T S
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAI--CF-FPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 23/253 (9%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
V C ++P G +A G D I+++ + + L GHT ++ + D+ +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-E 422
G C +W+IET D + S S D FV G D+ E
Sbjct: 160 SSGDTTCA---LWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 423 GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH----- 473
G ++ G + C + + + + D R+ F+ D L+ H
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----FDLRADQELMTYSHDNIIC 271
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF-V 532
+ S + + RL L ++WD L GV G SC G + V
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 533 ASGSEDGKVYIWH 545
A+GS D + IW+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H +V +PD +G+ D + +WDV R+T GH + + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNG 238
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPED---SLTSCSWNRDGTKFVCGGIRGQF 416
+ + L+ + EL + +S ++ +TS S+++ G + G
Sbjct: 239 NAFATGSDDATCRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAG---YDD 291
Query: 417 YQCDIEGQVLDSWEGV------RVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ C++ + GV RV+CL DG +V ++ +N
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 117/304 (38%), Gaps = 55/304 (18%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD---------PVTFTCQHRKT 342
+ T + HC V C F+P+G +A G D+ I+++ PV+ +
Sbjct: 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS------RV 152
Query: 343 LEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPE----DSLTS 397
L GH + + PD L+ G D +W++ T + + + + P D L+
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGD-QTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 398 CSWNRDGTKFVCGGIRG--QFYQCDIEGQVLDSWEGVR--VNCLWCRSDGK--------- 444
+ + F+ G + + I + + ++ G +N + DG+
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 445 --SVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWD-- 500
+ T H+++ YN E + N L V S + RL S ++WD
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELP---IVTSVAFSISGRLLFAGYSNGDCYVWDTL 328
Query: 501 LRDRIL-LRKFQGVTQGQFTIHSCFG-GANQDFVASGSEDGKVYIWHVKRELPIATLSGH 558
L + +L L Q +G+ SC G ++ + +GS D + IW SGH
Sbjct: 329 LAEMVLNLGTLQNSHEGRI---SCLGLSSDGSALCTGSWDKNLKIW---------AFSGH 376
Query: 559 TRTV 562
+ V
Sbjct: 377 RKIV 380
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 57/292 (19%)
Query: 331 DPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLN 388
+P C +TL+GH+ V L W+P+ + +V +D L VWN T + +KL
Sbjct: 52 NPTDLVCC--RTLQGHSGKVYSLDWTPE-KNWIVSASQD-GRLIVWNALTSQKTHAIKL- 106
Query: 389 HSPEDSLTSCSWNRDGTKFVCGG------IRGQFYQCDIEG-----QVLDSWEGVRVNCL 437
H P + C++ +G CGG I Q D +G +VL +G +C
Sbjct: 107 HCPW--VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 438 WCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHP------VMSFTIDATDRLALLNV 491
+ ++ ++ ++ + P V+S +I++ + ++
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 492 ST-QGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVK--- 547
S V LWDL RI R + + I+S + +GS+DG ++ ++
Sbjct: 225 SCDTTVRLWDL--RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 548 -------------RELPIAT-----------LSGHTRTVSCVAWNPVYHQMI 575
ELPI T +G++ C W+ + +M+
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-DCYVWDTLLAEMV 333
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 534 SGSEDGKVYIWHVKRELPIATL-----SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+GS D +W V I+ SGHT V ++ N + M S S D TVR+W
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 22/240 (9%)
Query: 329 DVDPV-TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKL 387
++DPV + R+TL GH + + W D S LL+ +D +L +W+ T K+
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQD-GKLIIWDSYTT---NKV 90
Query: 388 NHSPEDS--LTSCSWNRDGTKFVCGGIRG--QFYQCDI-EGQVLDSWEGV----RVNCLW 438
+ P S + +C++ G CGG+ Y EG V S E ++C
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-- 148
Query: 439 CRS-DGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGV 496
CR D ++ + ++ E + VMS ++ RL +
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 497 HLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS 556
LWD+R+ + + F G I CF N + A+GS+D ++ ++ + + T S
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAI--CF-FPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 23/253 (9%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
V C ++P G +A G D I+++ + + L GHT ++ + D+ +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-E 422
G C +W+IET D + S S D FV G D+ E
Sbjct: 160 SSGDTTCA---LWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 423 GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH----- 473
G ++ G + C + + + + D R+ F+ D L+ H
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----FDLRADQELMTYSHDNIIC 271
Query: 474 PVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF-V 532
+ S + + RL L ++WD L GV G SC G + V
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 533 ASGSEDGKVYIWH 545
A+GS D + IW+
Sbjct: 328 ATGSWDSFLKIWN 340
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
CK PDG L G + +T+ IWD+ T + + L LA SPDS
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDL--AAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 367 PEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI-EGQV 425
+ + VW++ + L V+ D + + DGTK GG+ D+ EG+
Sbjct: 161 SDG--NIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 426 L 426
L
Sbjct: 218 L 218
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 477 SFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTI 520
+ I ++ S + +WDL ++ L+R+FQG T G I
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 467 NLLQEDHPVMSFTIDATDRLAL-----------LNVSTQG-VHLWDLRDR-ILLRKFQGV 513
NL + DH TID D L L V++ G + +WD R + + +
Sbjct: 173 NLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSL 232
Query: 514 TQGQFTIHSCFGGANQD-FVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVY 571
T + +H NQ VA+G +DG + IW V++ +P++ L H + V ++P
Sbjct: 233 TGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSN 292
Query: 572 HQMIASVSDDCTVRIW 587
+ + + S+D ++ W
Sbjct: 293 PEHLFTCSEDGSLWHW 308
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
VA G+ KV + +K L GH + + V+W+P Y ++A+ S D V++W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 47/319 (14%)
Query: 312 DGLKLATGSKDTTVIIWDVDPVT----FTCQH-----RKTLEGHTLGVAYLAWSPDSSHL 362
+G + +G D ++++D++ + +TC+ R + H V + W P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 363 LVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTK--FVCGGIRGQFYQ-C 419
D L VW+ T L+ + E+++ S + TK V G RG Q C
Sbjct: 115 FTSSSFD-KTLKVWDTNT--LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171
Query: 420 DIE-GQVLDSWEGVRVNCL---WCRSDGKSVLAADTHHRIRTYNFEHLT------DSNLL 469
D++ G +G R L W + A R++ ++ + D +
Sbjct: 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
Query: 470 QEDHPVMSFTIDATDRLALLNVSTQGVHLW----DLRDRI--------LLRKFQGVTQG- 516
++ V S ++ L ++ G+HL D R R+ L + V
Sbjct: 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS 291
Query: 517 ----QFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH 572
+FT+ SC + FV GS + ++ V I L GH +TV C + +
Sbjct: 292 KKGLKFTV-SCGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF- 346
Query: 573 QMIASVSDDCTVRIWGPHL 591
Q + S S DC + W P L
Sbjct: 347 QELYSGSRDCNILAWVPSL 365
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 282 HLCTKEEFPCETTQVLNDHCDEVWFCKFSPD-GLKLATGSKDTTVIIWDVDP-----VTF 335
LC + C + +L H E+ +SP LAT S D+ V +WDV +T
Sbjct: 169 QLCDLKSGSC--SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226
Query: 336 TCQHRKTLEG-------HTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
+ K + H V L ++ D HLL VG ++ LW
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 484 DRLALLNVSTQGVHLWDL--RDRILLRKFQGVTQGQF-TIHSCFGGANQDFVASGSEDGK 540
+R L+ + V LW+L + +++ KF + S Q SGS+D
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ--AVSGSKDIC 150
Query: 541 VYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ +W + +++ +++ H V+CVA +P + S S+D + +W
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 483 TDRLALLNVSTQGVHLWDL--RDRILLRKFQGVTQGQFT-IHSCFGGANQDFVASGSEDG 539
+++ L+ + V LW++ ++ +L+ KF S F Q SG +D
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ--AVSGGKDF 161
Query: 540 KVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V +W + ++ + + + H+ V+CVA P + S +D + +W
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 498 LWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSG 557
LWD R + + D A G E G V + ++K T +
Sbjct: 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV 267
Query: 558 HTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
H++ ++ +A++ +AS+S+DCTV +
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAV 296
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 271 ESLENVSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
E LE SLLV+ E H D V DG + +G KD +V +WD+
Sbjct: 121 EILEKESLLVNKFAKYE------------HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 331 DPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHS 390
K+ H+ V +A P + + ED L +W+ +++
Sbjct: 169 SQKAVL----KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL-LWDTRKPKPATRIDFC 223
Query: 391 PEDSL-TSCSWN--RDGTKFVCGGIRGQFYQCDIE 422
D++ TS +W+ +D T F CG G +I+
Sbjct: 224 ASDTIPTSVTWHPEKDDT-FACGDETGNVSLVNIK 257
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL 555
V +WDL + +L+ + + + +C G + F++ G EDG++ +W ++ P +
Sbjct: 163 VKVWDLSQKAVLKSYNAHSSEVNCVAAC-PGKDTIFLSCG-EDGRILLWDTRKPKPATRI 220
Query: 556 S--GHTRTVSCVAWNP 569
+ V W+P
Sbjct: 221 DFCASDTIPTSVTWHP 236
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 135/366 (36%), Gaps = 72/366 (19%)
Query: 257 LQKYHCPYHNTKVDESLENVSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKL 316
L++ H+ ++ + E V L +F +T + L H ++V + D ++
Sbjct: 27 LEEERAKLHDVELHQVAERVEAL-------GQFVMKTRRTLKGHGNKVLCMDWCKDKRRI 79
Query: 317 ATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVW 376
+ S+D VI+WD +FT + V A++P + G ++ ++
Sbjct: 80 VSSSQDGKVIVWD----SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135
Query: 377 NI---ETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIE-GQVLDSW--E 430
E + K + L++CS+ + + G D+E GQ+L S+
Sbjct: 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195
Query: 431 GVRVNCL----------------------WCRSDGKSVLAADTH----HRIRTYNFEHLT 464
G V CL W G+ V A +TH + +R Y
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY------ 249
Query: 465 DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLR-DR-ILLRKFQGVTQGQFTIHS 522
S + DAT R L+DLR DR + + + + G ++
Sbjct: 250 -----PSGDAFASGSDDATCR------------LYDLRADREVAIYSKESIIFGASSVDF 292
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDC 582
G + +G D + +W V + ++ L GH VS + +P S S D
Sbjct: 293 SLSGR---LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDH 348
Query: 583 TVRIWG 588
T+R+W
Sbjct: 349 TLRVWA 354
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPI----ATLSGHTRTVSCVAWNP--VYHQMIASVSDD 581
++ FV G+ D V IW + +TL GH+ V VAW+P + +ASVS D
Sbjct: 170 SRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 582 CTVRIW 587
T IW
Sbjct: 229 RTCIIW 234
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 315 KLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPD---SSHLLVVGPEDCH 371
K TG D V IW + T TLEGH+ V +AWSP S+L V +
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 372 ELWVWNIETELLRVKLNHSPE--DSLTSCSWNRDGTKFVCGG 411
+W + E + L + D L SW+ G G
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNP-VYHQMIAS 577
H FG +AS S DGKV IW + R IA + H+ +V+ V W P Y ++
Sbjct: 63 HPKFGT----ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 578 VSDDCTVRIWGPHLNTNKSP 597
S D V + N SP
Sbjct: 119 ASSDGKVSVVEFKENGTTSP 138
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 526 GANQ-----DFVASGSEDGKVYIWHVKRELP-IATLSGHTRTVSCVAWNPVYHQMIASVS 579
GAN+ D VA+GS D ++I+ VKR + I L+ H V+ + W +++S +
Sbjct: 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGA 603
Query: 580 DDCTVR 585
D C R
Sbjct: 604 DACIKR 609
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 316 LATGSKDTTVIIWDVD-PVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW 374
+ATGS DT + I+ V P+ K L H GV L W S+ L+ G + C + W
Sbjct: 556 VATGSLDTNIFIYSVKRPMKII----KALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H E+ KF P G L + S+D + IW V + +TL GH V +A
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKD----GSNPRTLIGHRATVTDIAIIDRG 193
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
++L + LW T + +P D + S +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 534 SGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S S+D ++ IW VK TL GH TV+ +A ++ S S D T+R+W
Sbjct: 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW 208
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
H E+ KF P G L + S+D + IW V + +TL GH V +A
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKD----GSNPRTLIGHRATVTDIAIIDRG 190
Query: 360 SHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
++L + LW T + +P D + S +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 534 SGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S S+D ++ IW VK TL GH TV+ +A ++ S S D T+R+W
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW 205
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 524 FGGAN--QDFVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQM-----I 575
FG + Q ++A+G G ++IW+++ E+P+ ++ GH ++ + I
Sbjct: 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI 132
Query: 576 ASVSDDCTVRIWGPH 590
+ S D TV++W P
Sbjct: 133 VTGSRDGTVKVWDPR 147
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPI----ATLSGHTRTVSCVAWNP--VYHQMIASVSDD 581
++ FV G+ D V IW + +TL GH+ V VAW+P + +ASVS D
Sbjct: 172 SRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 582 CTVRIW 587
T IW
Sbjct: 231 RTCIIW 236
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 315 KLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSP 357
K TG D V IW + T TLEGH+ V +AWSP
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNP-VYHQMIAS 577
H FG +AS S DGKV IW + R IA + H+ +V+ V W P Y ++
Sbjct: 65 HPKFG----TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120
Query: 578 VSDDCTVRIWGPHLNTNKSP 597
S D V + N SP
Sbjct: 121 ASSDGKVSVVEFKENGTTSP 140
>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 249
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 310 SPDGLKL--ATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGP 367
P+GLKL G + +++ P+ K G AY+ W + V GP
Sbjct: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGS----AYIEWGKNKIIAAVYGP 59
Query: 368 EDCHELWVWNIETELLRVKLNHSP 391
+ H + + +LRV+ N +P
Sbjct: 60 RELHPKHLQRPDRAILRVRYNMAP 83
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 532 VASGSEDGKVYIWHVKR--ELPIATLSGHTRTVSCVAW-NPVYHQMIASVSDDCTVRIWG 588
+A+ S D V I+ V+ ++ IA L GH V VAW +P+Y ++AS S D V IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 589 PHLNTNKSPH 598
T + H
Sbjct: 88 EENGTWEKSH 97
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 315 KLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSP 357
K TG D V IW + T TLEGH+ V +AWSP
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPI----ATLSGHTRTVSCVAWNP--VYHQMIASVSDD 581
++ FV G+ D V IW + +TL GH+ V VAW+P + +ASVS D
Sbjct: 170 SRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 582 CTVRIW 587
T IW
Sbjct: 229 RTCIIW 234
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNP-VYHQMIAS 577
H FG +AS S DGKV IW + R IA + H+ +V+ V W P Y M+
Sbjct: 63 HPKFG----TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV 118
Query: 578 VSDDCTVRI 586
S D V +
Sbjct: 119 ASSDGKVSV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 315 KLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSP 357
K TG D V IW + T TLEGH+ V +AWSP
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPI----ATLSGHTRTVSCVAWNP--VYHQMIASVSDD 581
++ FV G+ D V IW + +TL GH+ V VAW+P + +ASVS D
Sbjct: 170 SRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 582 CTVRIW 587
T IW
Sbjct: 229 RTCIIW 234
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNP-VYHQMIAS 577
H FG +AS S DGKV IW + R IA + H+ +V+ V W P Y ++
Sbjct: 63 HPKFG----TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 578 VSDDCTVRIWGPHLNTNKSP 597
S D V + N SP
Sbjct: 119 ASSDGKVSVVEFKENGTTSP 138
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 315 KLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSP 357
K TG D V IW + T TLEGH+ V +AWSP
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 528 NQDFVASGSEDGKVYIWHVKRELPI----ATLSGHTRTVSCVAWNP--VYHQMIASVSDD 581
++ FV G+ D V IW + +TL GH+ V VAW+P + ASVS D
Sbjct: 170 SRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Query: 582 CTVRIW 587
T IW
Sbjct: 229 RTCIIW 234
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 526 GANQ-----DFVASGSEDGKVYIWHVKRELP-IATLSGHTRTVSCVAWNPVYHQMIASVS 579
GAN+ D VA+GS D ++I+ VKR I L+ H V+ + W +++S +
Sbjct: 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGA 603
Query: 580 DDCTVR 585
D C R
Sbjct: 604 DACIKR 609
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 444 KSVLAADTH-HRIRTYNFEHLTDSNLLQEDHP----VMSFTIDATDRLALLNVSTQGVHL 498
KS+L A T+ R+ ++ L ++ E+ P V S ID + +L + + +
Sbjct: 182 KSLLVALTNLSRVIIFDIRTLERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDI 240
Query: 499 WDLRDRILLRKFQGVTQGQFT-IHSC-FGGANQDFVASGSEDGKVYIWHVKR 548
WD+R +L+R + T + C F G N V GS + IW+ +
Sbjct: 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELL 383
II ++P+T C K GH + L + P +LL+ +D H L +WNI+T+ L
Sbjct: 132 IIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTL 186
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELL 383
II ++P+T C K GH + L + P +LL+ +D H L +WNI+T+ L
Sbjct: 96 IIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTL 150
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELL 383
II ++P+T C K GH + L + P +LL+ +D H L +WNI+T+ L
Sbjct: 95 IIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTL 149
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELL 383
II ++P+T C K GH + L + P +LL+ +D H L +WNI+T+ L
Sbjct: 95 IIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTL 149
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELL 383
II ++P+T C K GH + L + P +LL+ +D H L +WNI+T+ L
Sbjct: 91 IIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTL 145
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap
Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 157 MKFLILEQKYLEYLEDGRVLDALHVLRNELTPLNHNTAKVHEL 199
M F ++EQ LEDG+ LD+ +V+ N ++H KV L
Sbjct: 39 MIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL 81
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 37/261 (14%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
C + DG + S D T+ +WDV T + + GH V + +S +++ G
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVA----TGETYQRFVGHKSDVMSVDIDKKAS-MIISG 125
Query: 367 PEDCHELWVWNIETELLRVKLNH--------------SPEDSLTSCSWNRDGTKFVCGGI 412
D + VW I+ + L L H + +DS+T S D K V
Sbjct: 126 SRD-KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWN 182
Query: 413 RGQF-YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
QF + D G +N L DG + +A I +N L
Sbjct: 183 LNQFQIEADFIGH------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLR----KFQGVTQGQ--FTIHSCFG 525
V S + +R L + G+ ++ L + L+ +F G ++ + +
Sbjct: 237 QDEVFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 526 GANQDFVASGSEDGKVYIWHV 546
Q A G D + +W V
Sbjct: 296 ADGQTLFA-GYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 37/261 (14%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
C + DG + S D T+ +WDV T + + GH V + +S +++ G
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVA----TGETYQRFVGHKSDVMSVDIDKKAS-MIISG 125
Query: 367 PEDCHELWVWNIETELLRVKLNH--------------SPEDSLTSCSWNRDGTKFVCGGI 412
D + VW I+ + L L H + +DS+T S D K V
Sbjct: 126 SRD-KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWN 182
Query: 413 RGQF-YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
QF + D G +N L DG + +A I +N L
Sbjct: 183 LNQFQIEADFIGH------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLR----KFQGVTQGQ--FTIHSCFG 525
V S + +R L + G+ ++ L + L+ +F G ++ + +
Sbjct: 237 QDEVFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 526 GANQDFVASGSEDGKVYIWHV 546
Q A G D + +W V
Sbjct: 296 ADGQTLFA-GYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 37/261 (14%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
C + DG + S D T+ +WDV T + + GH V + +S +++ G
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVA----TGETYQRFVGHKSDVMSVDIDKKAS-MIISG 119
Query: 367 PEDCHELWVWNIETELLRVKLNH--------------SPEDSLTSCSWNRDGTKFVCGGI 412
D + VW I+ + L L H + +DS+T S D K V
Sbjct: 120 SRD-KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWN 176
Query: 413 RGQF-YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
QF + D G +N L DG + +A I +N L
Sbjct: 177 LNQFQIEADFIGH------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLR----KFQGVTQGQ--FTIHSCFG 525
V S + +R L + G+ ++ L + L+ +F G ++ + +
Sbjct: 231 QDEVFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 526 GANQDFVASGSEDGKVYIWHV 546
Q A G D + +W V
Sbjct: 290 ADGQTLFA-GYTDNVIRVWQV 309
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 317 ATGS-KDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWV 375
ATGS D +++IWD+ Q +GH G+ L W HLL+ D L +
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVL-L 289
Query: 376 WNIET 380
WN E+
Sbjct: 290 WNPES 294
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 308 KFSPDGLKLA---TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLV 364
+ SPDG K+A + IW D T + +K LE + L W+ DS LL+
Sbjct: 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSS--KKILEAKN--IRSLEWNEDSRKLLI 120
Query: 365 VG 366
VG
Sbjct: 121 VG 122
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLS----GHTRTVSCVAW-NPVYHQMIASVSDDCTVRI 586
VA+ S D + ++ + ++ LS H ++ + W +P Y ++IAS S D TV++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 587 W 587
W
Sbjct: 86 W 86
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLS----GHTRTVSCVAW-NPVYHQMIASVSDDCTVRI 586
VA+ S D + ++ + ++ LS H ++ + W +P Y ++IAS S D TV++
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 587 W 587
W
Sbjct: 84 W 84
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 531 FVASGSEDGKVYIWHVKRELPI-----ATLSGHTRTVSCVAWNPVY-------HQMIASV 578
F+A +D V + K E I SGH V+ + VY Q+IASV
Sbjct: 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162
Query: 579 SDDCTVRIW 587
DDCT+ IW
Sbjct: 163 GDDCTLIIW 171
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 531 FVASGSEDGKVYIWHVKRELPI-----ATLSGHTRTVSCVAWNPVY-------HQMIASV 578
F+A +D V + K E I SGH V+ + VY Q+IASV
Sbjct: 104 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 163
Query: 579 SDDCTVRIW 587
DDCT+ IW
Sbjct: 164 GDDCTLIIW 172
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLS----GHTRTVSCVAW-NPVYHQMIASVSDDCTVRI 586
VA+ S D + ++ + ++ LS H ++ + W +P Y ++IAS S D TV++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 587 W 587
W
Sbjct: 86 W 86
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
T LN CD WF LAT S D TV IWD+ V +L H V
Sbjct: 255 THVALNPCCD--WF---------LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNA 302
Query: 353 LAWSPDSSHLLVV 365
+SPD + LL
Sbjct: 303 ACFSPDGARLLTT 315
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
A+ V +G G V + ++ + + L H + V+ VA NP +A+ S D TV+I
Sbjct: 220 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 278
Query: 587 W 587
W
Sbjct: 279 W 279
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
LN CD WF LAT S D TV IWD+ V +L H V +
Sbjct: 257 ALNPCCD--WF---------LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACF 304
Query: 356 SPDSSHLLVV 365
SPD + LL
Sbjct: 305 SPDGARLLTT 314
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
A+ V +G G V + ++ + + L H + V+ VA NP +A+ S D TV+I
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277
Query: 587 W 587
W
Sbjct: 278 W 278
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
LN CD WF LAT S D TV IWD+ V +L H V +
Sbjct: 257 ALNPCCD--WF---------LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACF 304
Query: 356 SPDSSHLLVV 365
SPD + LL
Sbjct: 305 SPDGARLLTT 314
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
A+ V +G G V + ++ + + L H + V+ VA NP +A+ S D TV+I
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277
Query: 587 W 587
W
Sbjct: 278 W 278
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 92/261 (35%), Gaps = 37/261 (14%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
C + DG + S D T+ +WDV T + + GH V + +S +++ G
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVA----TGETYQRFVGHKSDVMSVDIDKKAS-MIISG 125
Query: 367 PEDCHELWVWNIETELLRVKLNH--------------SPEDSLTSCSWNRDGTKFVCGGI 412
D + VW I+ + L L H + +DS+T S D K V
Sbjct: 126 SRD-KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWN 182
Query: 413 RGQF-YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
QF + D G +N L DG + +A I +N L
Sbjct: 183 LNQFQIEADFIGH------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLR----KFQGVTQGQ--FTIHSCFG 525
V S + +R L + G+ ++ L + L+ +F G + + +
Sbjct: 237 QDEVFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 526 GANQDFVASGSEDGKVYIWHV 546
Q A G D + +W V
Sbjct: 296 ADGQTLFA-GYTDNVIRVWQV 315
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVI-IWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPD 358
H + V + + G +AT S+D T+I ++ D + R+ L+ + + + WSPD
Sbjct: 178 HANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTS--IIDMRWSPD 235
Query: 359 SSHLLVVG 366
S L VV
Sbjct: 236 GSKLAVVS 243
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 30/216 (13%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
C + DG + S D T+ +WDV T + + GH V + +S +++ G
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVA----TGETYQRFVGHKSDVMSVDIDKKAS-MIISG 125
Query: 367 PEDCHELWVWNIETELLRVKLNH--------------SPEDSLTSCSWNRDGTKFVCGGI 412
D + VW I+ + L L H + +DS+T S D K V
Sbjct: 126 SRD-KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWN 182
Query: 413 RGQF-YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
QF + D G +N L DG + +A I +N L
Sbjct: 183 LNQFQIEADFIGH------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILL 507
V S + +R L + G+ ++ L + L+
Sbjct: 237 QDEVFSLAF-SPNRYWLAAATATGIKVFSLDPQYLV 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,404,468
Number of Sequences: 62578
Number of extensions: 844458
Number of successful extensions: 2728
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1919
Number of HSP's gapped (non-prelim): 532
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)