RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10566
(604 letters)
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 147 bits (374), Expect = 4e-40
Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 69/327 (21%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L H V KFSP+G LA+ S D + IW + KT+ GH LG++ +A
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVA 72
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG-- 411
WS DS+ LV +D L +W++ + + L+ HS + + C++N V G
Sbjct: 73 WSSDSNL-LVSASDDK-TLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFD 128
Query: 412 --IRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLA------------ADTHHR 454
+R D++ G+ L + V+ + DG ++ +
Sbjct: 129 ESVR----IWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 183
Query: 455 IRTYNFEHLTDSNLLQEDHPVMS--F----------TIDATDRLALLNVSTQGVHLWDLR 502
++T + + PV F T+D T + LWD
Sbjct: 184 LKTLIDDD---------NPPVSFVKFSPNGKYILAATLDNT------------LKLWDYS 222
Query: 503 DRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTV 562
L+ + G ++ I + F ++ SGSED VYIW+++ + + L GHT V
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Query: 563 SCVAWNPVYHQMIASVS--DDCTVRIW 587
A +P +IAS + +D T+++W
Sbjct: 283 ISTACHPT-ENIIASAALENDKTIKLW 308
Score = 86.7 bits (216), Expect = 8e-19
Identities = 54/293 (18%), Positives = 91/293 (31%), Gaps = 96/293 (32%)
Query: 317 ATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVW 376
AT SK T V + TL GHT V+ + +SP+ L D + +W
Sbjct: 1 ATQSKPTPVKPNY--------ALKFTLAGHTKAVSSVKFSPNGEWL-ASSSAD-KLIKIW 50
Query: 377 NIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRV 434
+ + H ++ +W+ D V S + ++
Sbjct: 51 GAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSA-----------------SDDKTLK- 90
Query: 435 NCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQ 494
+W D + ++T H + V N + Q
Sbjct: 91 --IW---D------VSSGKCLKTLK-GH---------SNYVFC-----------CNFNPQ 118
Query: 495 G-----------VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQD--FVASG 535
V +WD++ L+ HS F N+D + S
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPA--------HSDPVSAVHF---NRDGSLIVSS 167
Query: 536 SEDGKVYIWHVKRELPIATLS-GHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
S DG IW + TL VS V ++P + I + + D T+++W
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLW 219
Score = 82.1 bits (204), Expect = 3e-17
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ + L H + V+ C F+P + +GS D +V IWDV T + KTL H+ V+
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVS 153
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
+ ++ D S L+V D +W+ + + L+ ++ ++ ++ +G +
Sbjct: 154 AVHFNRDGS-LIVSSSYDGL-CRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAA 210
Score = 48.6 bits (117), Expect = 3e-06
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGS--KDTTVIIWDVD 331
E Q L H D V P +A+ + D T+ +W D
Sbjct: 270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 144 bits (366), Expect = 2e-36
Identities = 64/298 (21%), Positives = 102/298 (34%), Gaps = 44/298 (14%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ H DEV C FS D +AT S D V IWD T + T + H+ V
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA----TGKLVHTYDEHSEQVNCCH 706
Query: 355 WSPDSSHLLVV-GPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
++ S+HLL+ G D L +W++ E H+ +S+ C ++ D
Sbjct: 707 FTNKSNHLLLATGSNDFF-LKLWDLNQKECRNTMFGHT--NSVNHCRFSPDDELLASCSA 763
Query: 413 RGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
G LW I F ++ +
Sbjct: 764 DGTL-------------------RLWDVRSANER------KSINVKRFFLSSEDPPEDVE 798
Query: 473 HPVMS--FTIDATDRLALLNVSTQGVHLWDLRDRILLRK-FQGVTQGQFTIHSCFGGANQ 529
V ++ D ++ + + V L+D+ LL + G TI C
Sbjct: 799 VIVKCCSWSADGD-KIIV--AAKNKVLLFDIHTSGLLAEIHTGHHS---TIQYCDFSPYD 852
Query: 530 DFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V +W++ L +A GH V V ++P + SDD T+R+W
Sbjct: 853 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVW 909
Score = 136 bits (344), Expect = 1e-33
Identities = 50/301 (16%), Positives = 88/301 (29%), Gaps = 66/301 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
++ H + +C FSP V +W++D + GH V
Sbjct: 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVH 886
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ +SPD S + +D + VW + + E + + T +
Sbjct: 887 GVMFSPDGSS-FLTASDDQT-IRVWETKKVCKNSAIVLKQE---IDVVFQENETMVLAVD 941
Query: 412 IRGQFYQCDIE-GQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
+ GQ+ E +V+C + V D I+
Sbjct: 942 NIRGLQLIAGKTGQIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIK-------------- 986
Query: 471 EDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQG----VTQGQFTIHSCFGG 526
+ +L + + G V QFT
Sbjct: 987 ---------------------------IIELPNNRVFSSGVGHKKAVRHIQFT------- 1012
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI 586
A+ + S SED + +W+ + + L H TV + S S D TV++
Sbjct: 1013 ADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ--DSRLLSWSFDGTVKV 1069
Query: 587 W 587
W
Sbjct: 1070 W 1070
Score = 134 bits (338), Expect = 6e-33
Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 58/305 (19%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
+ F + D V C +S DG K+ +K+ ++ + +
Sbjct: 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT----SGLLAEIHT 837
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRD 403
GH + Y +SP V+ + + +WNI++ L H + ++ D
Sbjct: 838 GHHSTIQYCDFSPYDHL-AVIALSQ-YCVELWNIDSRLKVADCRGHL--SWVHGVMFSPD 893
Query: 404 GTKFVCGGIRGQFYQCDIE-GQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
G+ F+ + + + + + + + VLA D ++
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ------ 947
Query: 463 LTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS 522
L + + + +
Sbjct: 948 -----------------------------------LIAGKTGQIDYLPEA------QVSC 966
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDC 582
C + ++VA G EDG + I + ++ GH + V + + + + S S+D
Sbjct: 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDS 1025
Query: 583 TVRIW 587
+++W
Sbjct: 1026 VIQVW 1030
Score = 132 bits (333), Expect = 3e-32
Identities = 46/316 (14%), Positives = 94/316 (29%), Gaps = 62/316 (19%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ + F + + + + + + V+
Sbjct: 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG-------KTGQIDYLPEAQVSCCC 968
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
SP ++ G ED + + + + + H ++ + DG +
Sbjct: 969 LSPHLEYV-AFGDED-GAIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISS--- 1021
Query: 414 GQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
S + ++ +W G V ++ + DS LL
Sbjct: 1022 --------------SEDSVIQ---VWNWQTGDYVFLQAHQETVKDFRLLQ--DSRLL--- 1059
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
S++ D T V +W++ + R F + SC ++
Sbjct: 1060 ----SWSFDGT------------VKVWNVITGRIERDFTCHQGT---VLSCAISSDATKF 1100
Query: 533 ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW----G 588
+S S D IW P+ L GH V C A++ ++A+ D+ +RIW G
Sbjct: 1101 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDG 1159
Query: 589 PHLNTNKSPHLASSLT 604
L++ +
Sbjct: 1160 QLLHSCAPISVEEGTA 1175
Score = 121 bits (305), Expect = 9e-29
Identities = 51/307 (16%), Positives = 92/307 (29%), Gaps = 66/307 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
H V +F+ DG L + S+D+ + +W+ T + L+ H V
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ----TGDYV-FLQAHQETVK 1048
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
DS L+ D + VWN+ T + R H ++ SC+ + D TKF
Sbjct: 1049 DFRLLQDSR--LLSWSFD-GTVKVWNVITGRIERDFTCHQ--GTVLSCAISSDATKFSST 1103
Query: 411 GIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSN 467
+ L +G V C DG + D
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD---------------- 1147
Query: 468 LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQ-FTIHS---- 522
+ + +W++ D LL ++ + H
Sbjct: 1148 -------------NGE------------IRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 523 --CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
CF + + S G + W+V T + + + +P + +V +
Sbjct: 1183 DVCFS-PDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDN 1238
Query: 581 DCTVRIW 587
+ I
Sbjct: 1239 LGILYIL 1245
Score = 97.2 bits (242), Expect = 5e-21
Identities = 42/257 (16%), Positives = 76/257 (29%), Gaps = 52/257 (20%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L H + V + D +L + S D TV +W+V T + + H V A
Sbjct: 1038 VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVI----TGRIERDFTCHQGTVLSCA 1092
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGTKFVCGGIR 413
S D++ D +W+ + +L H+ + +++ DG G
Sbjct: 1093 ISSDATKF-SSTSAD-KTAKIWSFDLLSPLHELKGHN--GCVRCSAFSLDGILLATG--- 1145
Query: 414 GQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
G +R +W SDG+ + +
Sbjct: 1146 --------------DDNGEIR---IWNVSDGQLLHSCAPISVEEG----------TATHG 1178
Query: 473 HPVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ 529
V F+ D+ L S G + W++ + F + +
Sbjct: 1179 GWVTDVCFSPDSK-TLV----SAGGYLKWWNVATGDSSQTFYTNGTN---LKKIHVSPDF 1230
Query: 530 DFVASGSEDGKVYIWHV 546
+ G +YI V
Sbjct: 1231 RTYVTVDNLGILYILQV 1247
Score = 92.6 bits (230), Expect = 1e-19
Identities = 46/296 (15%), Positives = 89/296 (30%), Gaps = 72/296 (24%)
Query: 308 KFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGP 367
+ G T+ R + HT V + +S D +
Sbjct: 586 QEGDTGRLYLEWINKKTIKNLS----------RLVVRPHTDAVYHACFSQDGQR-IASCG 634
Query: 368 EDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIE-GQVL 426
D L V+ ET + + + ED + C+++ D + + D G+++
Sbjct: 635 ADK-TLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692
Query: 427 DSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATD 484
+++ +VNC + +L A T SN D
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLA--------------TGSN-------------DFF- 724
Query: 485 RLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIW 544
+ LWDL + G T ++ C + + +AS S DG + +W
Sbjct: 725 -----------LKLWDLNQKECRNTMFGHTNS---VNHCRFSPDDELLASCSADGTLRLW 770
Query: 545 HVKRELPIATLS-------------GHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V+ +++ V C +W+ I + + +
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG-DKIIVAAKNKVLLFD 825
Score = 74.1 bits (182), Expect = 8e-14
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 284 CTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
P + H V FSPD L + + W+V T +T
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVA----TGDSSQTF 1214
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIE 379
+ + + SPD V L++ +
Sbjct: 1215 YTNGTNLKKIHVSPDFRT-YVTVDNL-GILYILQVL 1248
Score = 47.5 bits (113), Expect = 1e-05
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 517 QFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIA 576
Q + + G + + HT V ++ Q IA
Sbjct: 579 QAKLQAKQEGDTGRLYLEWINKKTIKNLS------RLVVRPHTDAVYHACFSQ-DGQRIA 631
Query: 577 SVSDDCTVRIW 587
S D T++++
Sbjct: 632 SCGADKTLQVF 642
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 138 bits (350), Expect = 8e-35
Identities = 43/321 (13%), Positives = 97/321 (30%), Gaps = 44/321 (13%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
T++ +H + K SP G A+G V IWD T + T+ + V
Sbjct: 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT--QTTHILKTTIPVFSGPVK 107
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGT-KFVC 409
++W +S + VG V+ +T L + ++ S + + +
Sbjct: 108 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA--RAMNSVDFKPSRPFRIIS 165
Query: 410 GG----IRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
G + + + + ++ V+ + DG + I YN
Sbjct: 166 GSDDNTVA--IF--EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN--- 218
Query: 463 LTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-----------VHLWDLRDRILLRKFQ 511
D + + + L S G + +W++ + +
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278
Query: 512 -----GVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVA 566
Q + + S S +G + + + GH + ++ ++
Sbjct: 279 VGTRIEDQQLGII-------WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331
Query: 567 WNPVYHQMIASVSDDCTVRIW 587
+ + + S + + W
Sbjct: 332 SSA-DGKTLFSADAEGHINSW 351
Score = 123 bits (312), Expect = 6e-30
Identities = 42/308 (13%), Positives = 91/308 (29%), Gaps = 64/308 (20%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDG-LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ L + F P ++ +GS D TV I++ + + T HT V
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFV 193
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSP-----EDSLTSCSWNRDG 404
+ ++PD S G D + ++N V + S S+ +W+ DG
Sbjct: 194 HSVRYNPDGSLFASTG-GD-GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 405 TKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHL 463
TK S + ++ +W + T +T
Sbjct: 252 TKIASA-----------------SADKTIK---IW---N------VATLKVEKTIPVGT- 281
Query: 464 TDSNLLQEDHPVMS--FTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIH 521
L ++ + ++ + + + G + I
Sbjct: 282 --------RIEDQQLGIIWTK-QALVSISAN-GFINFVNPELGSIDQVRYGHNKA---IT 328
Query: 522 S-CFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGHTRTVSCVAWNPVYHQMIASVS 579
+ A+ + S +G + W + + H ++ + + +VS
Sbjct: 329 ALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGDLFTVS 385
Query: 580 DDCTVRIW 587
D +++
Sbjct: 386 WDDHLKVV 393
Score = 120 bits (303), Expect = 7e-29
Identities = 45/308 (14%), Positives = 93/308 (30%), Gaps = 31/308 (10%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE-------GHT 347
+H V +++PDG A+ D T+++++ E H+
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHS 239
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKF 407
V L WSPD + + D + +WN+ T + +
Sbjct: 240 GSVFGLTWSPDGTK-IASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 408 VCGGIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLT 464
V G + E G + G + L +DGK++ +AD I +++
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 465 DSNLLQEDH--PVMSFTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQGVTQGQFT 519
+ + + H + + L + + + + +
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDL----FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413
Query: 520 IHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
A+ D + + I+ + + SCVA + Q +A
Sbjct: 414 PLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVPISY--NSSCVALSND-KQFVAVGG 467
Query: 580 DDCTVRIW 587
D V ++
Sbjct: 468 QDSKVHVY 475
Score = 108 bits (271), Expect = 8e-25
Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 64/300 (21%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
+ H + K + G L T S D + + + + + LA S
Sbjct: 363 PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAG-GSGVDSSKAVANKLSSQPLGLAVS 420
Query: 357 PDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
D + V + +++ L V ++++ + + + D G
Sbjct: 421 ADGD-IAVAACYK--HIAIYSHGK-LTEVPISYNS----SCVALSNDKQFVAVG------ 466
Query: 417 YQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPV 475
+ V ++ S H +
Sbjct: 467 -----------GQDSKVH---VYKLSGASVSEVKTIVHP------------------AEI 494
Query: 476 MS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQ 529
S F+ + L +T + V + + + L T + + +
Sbjct: 495 TSVAFSNNGA-FLV----ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS-PDN 548
Query: 530 DFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+A+GS D V +W++ + PI H + I S D ++ W
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFW 607
Score = 100 bits (251), Expect = 2e-22
Identities = 44/305 (14%), Positives = 86/305 (28%), Gaps = 90/305 (29%)
Query: 309 FSPDG--LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
+P G ++ G+ TV + + + H+ SP + G
Sbjct: 26 NTPAGDKIQYCNGTSVYTVPVGSLTDT-------EIYTEHSHQTTVAKTSPSGYY-CASG 77
Query: 367 PEDCHELWVWNIET--ELLRVKLN-HSPEDSLTSCSWNRDGTKFV-CGGIRGQFYQC-DI 421
+ +W+ +L+ + S + SW+ + + G R +F
Sbjct: 78 DVH-GNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDSESKRIAAVGEGRERFGHVFLF 134
Query: 422 E-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSF 478
+ G + G +N + + + + S+
Sbjct: 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRII---------------SGSD----------- 168
Query: 479 TIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF---------GGANQ 529
D T V +++ F H+ F G
Sbjct: 169 --DNT------------VAIFEGPPFKFKSTFGE--------HTKFVHSVRYNPDG---- 202
Query: 530 DFVASGSEDGKVYIWHVKRELPIATLS-------GHTRTVSCVAWNPVYHQMIASVSDDC 582
AS DG + +++ H+ +V + W+P IAS S D
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADK 261
Query: 583 TVRIW 587
T++IW
Sbjct: 262 TIKIW 266
Score = 83.4 bits (207), Expect = 5e-17
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
T+V + S D +A G +D+ V ++ + + H + +
Sbjct: 443 TEVPISY--NSSCVALSNDKQFVAVGGQDSKVHVYKLS--GASVSE-VKTIVHPAEITSV 497
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN----HSPEDSLTSCSWNRDGTKFVC 409
A+S + + LV + ++ +++ N H+ + SW+ D +
Sbjct: 498 AFSNNGAF-LVATDQS-RKVIPYSVANNFELAHTNSWTFHT--AKVACVSWSPDNVRLAT 553
Query: 410 GG 411
G
Sbjct: 554 GS 555
Score = 79.5 bits (197), Expect = 9e-16
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
T H +V +SPD ++LATGS D +VI+W+++ + H +
Sbjct: 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN--KPSDHPIIIKGAHAMSSVN 585
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIE 379
+ + ++ G +D + WN+
Sbjct: 586 SVIWLNETTIVSAG-QD-SNIKFWNVP 610
Score = 72.6 bits (179), Expect = 2e-13
Identities = 42/256 (16%), Positives = 75/256 (29%), Gaps = 64/256 (25%)
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW 400
T G + + +P + + + V ++ E+ HS T
Sbjct: 16 TARGTAVVLGN---TPAGDKIQYCNGTSVYTVPVGSLTDTEIYT---EHS--HQTTVAKT 67
Query: 401 NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ G G G VR +W D I
Sbjct: 68 SPSGYYCASG-----------------DVHGNVR---IW---D------TTQTTHILKTT 98
Query: 460 FEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVS---TQGVHLWDLRDRILLRKFQGVT 514
+ PV + ++ R+A V + H++ G
Sbjct: 99 IPVFSG--------PVKDISWDSESK-RIAA--VGEGRERFGHVFLFDTGTSNGNLTGQA 147
Query: 515 QGQFTIHSC-FGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH- 572
+ ++S F + + SGS+D V I+ +T HT+ V V +NP
Sbjct: 148 RA---MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP---D 201
Query: 573 -QMIASVSDDCTVRIW 587
+ AS D T+ ++
Sbjct: 202 GSLFASTGGDGTIVLY 217
Score = 68.4 bits (168), Expect = 3e-12
Identities = 30/267 (11%), Positives = 76/267 (28%), Gaps = 69/267 (25%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ V N + S DG +A + + I+ + + + +
Sbjct: 402 SSKAVANKLSSQPLGLAVSADG-DIAVAACYKHIAIYS------HGKLTEVPISYN--SS 452
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+A S D + VG +D ++ V+ + + +TS +++ +G V
Sbjct: 453 CVALSNDKQ-FVAVGGQD-SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT- 509
Query: 412 IRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADT---H-HRIRTYNFEHLTDS 466
V + ++ + ++ H ++ ++ D+
Sbjct: 510 ----------------DQSRKVI---PYSVANNFELAHTNSWTFHTAKVACVSWSP--DN 548
Query: 467 NLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKF------QGVTQGQFTI 520
L + ++D + V +W++
Sbjct: 549 VRL------ATGSLDNS------------VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW- 589
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVK 547
N+ + S +D + W+V
Sbjct: 590 ------LNETTIVSAGQDSNIKFWNVP 610
Score = 53.4 bits (129), Expect = 1e-07
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+ H + + + +D+ + W+V
Sbjct: 570 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 610
Score = 28.3 bits (64), Expect = 9.2
Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 3/35 (8%)
Query: 555 LSGHTRTVSCVAWNPVYHQMIASVS--DDCTVRIW 587
T + P I + TV +
Sbjct: 14 PRTARGTAVVLGNTPA-GDKIQYCNGTSVYTVPVG 47
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 128 bits (325), Expect = 3e-33
Identities = 58/308 (18%), Positives = 105/308 (34%), Gaps = 71/308 (23%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ L H V S A+ S D + +WD++ + K+++ +
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE----NGKQIKSIDAGPVDA 125
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVC 409
LA+SPDS + L G ++ ++ +E+ + + S +++ DG
Sbjct: 126 WTLAFSPDSQY-LATGTHV-GKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLAS 181
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSN 467
G + +G + ++ + GK + + H IR+ F DS
Sbjct: 182 G-----------------AIDGIIN---IFDIATGKLLHTLEGHAMPIRSLTFSP--DSQ 219
Query: 468 LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS----- 522
LL ++ + D + ++D++ L G H+
Sbjct: 220 LL------VTASDDGY------------IKIYDVQHANLAGTLSG--------HASWVLN 253
Query: 523 -CFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
F D S S D V +W V + T H V V +N I SV
Sbjct: 254 VAF---CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN-GSKIVSVG 309
Query: 580 DDCTVRIW 587
DD + I+
Sbjct: 310 DDQEIHIY 317
Score = 123 bits (311), Expect = 2e-31
Identities = 62/303 (20%), Positives = 105/303 (34%), Gaps = 63/303 (20%)
Query: 295 QVLNDHCDEVWFCKFSP----DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ H D +W + + + TGS D V +W + +LEGH LGV
Sbjct: 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR--DERLDLQWSLEGHQLGV 83
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVC 409
+ S D H + +W++E + ++ + +++ D
Sbjct: 84 VSVDISHTLPI-AASSSLDAH-IRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLAT 139
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSN 467
G + G V ++ GK + DT I + + D
Sbjct: 140 G-----------------THVGKVN---IFGVESGKKEYSLDTRGKFILSIAYSP--DGK 177
Query: 468 LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFGG 526
L S ID ++++D+ LL +G I S F
Sbjct: 178 YL------ASGAIDGI------------INIFDIATGKLLHTLEG---HAMPIRSLTF-- 214
Query: 527 ANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
+ D + + S+DG + I+ V+ TLSGH V VA+ P S S D +V
Sbjct: 215 -SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSV 272
Query: 585 RIW 587
++W
Sbjct: 273 KVW 275
Score = 97.9 bits (245), Expect = 2e-22
Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 65/283 (22%)
Query: 316 LATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSH---LLVVGPEDCHE 372
S++ K + H + +AW + +V G D
Sbjct: 5 HHHSSRENLYFQGTNQ----YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDL- 59
Query: 373 LWVWNIETELLRVKLN---HSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSW 429
+ VW E L ++ + H + S + S
Sbjct: 60 VKVWKWRDERLDLQWSLEGHQ--LGVVSVDISHTLPIAASS-----------------SL 100
Query: 430 EG-VRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLA 487
+ +R LW +GK + + D T F DS L + T +
Sbjct: 101 DAHIR---LWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYL------ATGTHVGKVNI- 148
Query: 488 LLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQD--FVASGSEDGKVYIW 544
+ + + I S + + D ++ASG+ DG + I+
Sbjct: 149 -----------FGVESGKKEYSLDTRGKF---ILSIAY---SPDGKYLASGAIDGIINIF 191
Query: 545 HVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + TL GH + + ++P Q++ + SDD ++I+
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIY 233
Score = 76.7 bits (190), Expect = 2e-15
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L+ H V F PD + S D +V +WDV T T H V +
Sbjct: 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG----TRTCVHTFFDHQDQVWGVK 297
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIE 379
++ + S +V +D E+ +++
Sbjct: 298 YNGNGSK-IVSVGDD-QEIHIYDCP 320
Score = 30.1 bits (69), Expect = 2.2
Identities = 3/26 (11%), Positives = 4/26 (15%), Gaps = 4/26 (15%)
Query: 572 HQMIASVSDDCTVRIW----GPHLNT 593
H S + G
Sbjct: 2 HHHHHHSSRENLYFQGTNQYGILFKQ 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 130 bits (328), Expect = 7e-33
Identities = 36/306 (11%), Positives = 92/306 (30%), Gaps = 58/306 (18%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
D + G+ + + + D + R+ + H + L + P
Sbjct: 96 RADYTAVDTAKLQMRRFILGTTEGDIKVLDSN----FNLQREIDQAHVSEITKLKFFPSG 151
Query: 360 SHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQ 418
L+ +D +L +W+++ R + H ++T + G +
Sbjct: 152 EA-LISSSQD-MQLKIWSVKDGSNPRTLIGHR--ATVTDIAIIDRGRNVLSA-------- 199
Query: 419 CDIEGQVLDSWEG-VRVNCLWCRSDGKSV--LAADTHHRIRTYNFEHLTDSNLLQEDHPV 475
S +G +R LW G ++ + + + D +
Sbjct: 200 ---------SLDGTIR---LWECGTGTTIHTFNRKENPHDGVNSIALFVGT-----DRQL 242
Query: 476 MSFTIDATDRLALLNVSTQG-----------VHLWDLRDRILLRK-FQGVTQGQFTIHSC 523
+ + L T G + + ++ + + T ++
Sbjct: 243 HEISTSKKNNLE---FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--T 297
Query: 524 FGGANQDFVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDD 581
G N +++ +G E+G + W ++ L ++ V + + S D
Sbjct: 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA--GALFVSSGFD 355
Query: 582 CTVRIW 587
++++
Sbjct: 356 TSIKLD 361
Score = 74.2 bits (183), Expect = 3e-14
Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 20/130 (15%)
Query: 289 FPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH-RKTLEGHT 347
F Q+ + +F G + G + + +V + + + T
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFT 290
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNH----------SPEDSL 395
L ++++ + G E+ L W++ + + L + +
Sbjct: 291 CSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALF 349
Query: 396 TSCSWNRDGT 405
S + D +
Sbjct: 350 VSSGF--DTS 357
Score = 63.8 bits (156), Expect = 6e-11
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 9/118 (7%)
Query: 299 DHCDEVWFCKFSPDGLKLATGSKDTTVIIWD-VDP-VTFTCQHRKTLEGHTLGVAYL--- 353
+ D + + + + VD + +H+ + G++ GV
Sbjct: 3 HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGN 62
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ SH L D H +++N L + D + +F+ G
Sbjct: 63 TFEKVGSH-LYKARLDGH-DFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGT 116
Score = 61.9 bits (151), Expect = 2e-10
Identities = 3/56 (5%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ DG ++++ L + + + + +++
Sbjct: 71 LYKARLDGHDFLFNTIIRDGSKML-KRADYTAVDTAKL-QMRRFILGTTEGDIKVL 124
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 128 bits (324), Expect = 1e-32
Identities = 17/313 (5%), Positives = 49/313 (15%), Gaps = 75/313 (23%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ D K K T I+ ++ + + L+ + +
Sbjct: 19 IQMMLAADVHLGTKNCDFQ-MERYVYKRRTDGIYIIN----LGKTWEKLQLAARVIVAIE 73
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG-- 411
D P + + + H+ + ++
Sbjct: 74 NPQDIIV-QSARPYG-QRAVLKFAQYTGAHAIAGRHT--PGTFTNQLQTSFSEPRLLILT 129
Query: 412 --IR------GQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
+ +R + ++ K +
Sbjct: 130 DPRTDHQPIKES--ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQS------------- 174
Query: 462 HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIH 521
+ L+ R + +
Sbjct: 175 --IGCL-------------FWL------------LARMVLQMRGTILPGHK---WDVMVD 204
Query: 522 S------CFGGANQDFVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQM 574
++ A+ + T + A P
Sbjct: 205 LFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPA-QAG 263
Query: 575 IASVSDDCTVRIW 587
+
Sbjct: 264 ADWTAAPAPAAGG 276
Score = 109 bits (274), Expect = 5e-26
Identities = 0/326 (0%), Positives = 0/326 (0%), Gaps = 87/326 (26%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+T + L + + D + + ++ HT G
Sbjct: 57 KTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQ----YTGAHAIAGRHTPGTF 112
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN--------HSPEDSLTSCSWNRD 403
S + E + +
Sbjct: 113 TNQLQTSFSE-PRLLILT-DPRTDHQPIKESALGNIPTIAFCDTDSP--MRYVDIGIPAN 168
Query: 404 GTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
G + I +
Sbjct: 169 NKGKQSIG----------------CLFWLLA---RM---V------LQMRGTILPGHKWD 200
Query: 463 LTDSNLLQEDH--PVMSFTIDATD--RLALLNVS-----TQGVHLWDLRD-RILLRKFQG 512
+ A + + + +
Sbjct: 201 V-------MVDLFFYRDPEEAKEQEEEEA----ALVAPDY--GAVAEYAAPAADTWGGEW 247
Query: 513 VTQGQFTIHS-CF---GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHT-------RT 561
T + P + T
Sbjct: 248 GTD---AAAQPAAIPAQ----AGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPT 300
Query: 562 VSCVAWNPVYHQMIASVSDDCTVRIW 587
Sbjct: 301 - 325
Score = 80.3 bits (199), Expect = 2e-16
Identities = 0/297 (0%), Positives = 0/297 (0%), Gaps = 68/297 (22%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD---PVTFTCQHRKTLEGHTLGVA 351
+ H + + + + +
Sbjct: 102 AIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYV 161
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP----EDSLTSCSWN-RDGTK 406
+ ++ +G L ++ + + +
Sbjct: 162 DIGIPANNKGKQSIGCLFWL-LARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Query: 407 FVCGGIRGQFYQCD---------IEGQVLDSWEG--VRVNCLWCRSDGKSVLA------- 448
E
Sbjct: 221 EAALV-------APDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAG-ADWTAAPAP 272
Query: 449 -----ADTHHRIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHL 498
+ + +
Sbjct: 273 AAGGWDTAAAPAPGWEQG---SAPVPAAAPTPNWGE----- 324
Query: 499 WDLRDRILLRKFQGVTQGQFTIHS------CFGGANQD--FVASGSEDGKVYIWHVK 547
Sbjct: 325 ------- 374
Score = 67.2 bits (165), Expect = 4e-12
Identities = 0/91 (0%), Positives = 0/91 (0%), Gaps = 10/91 (10%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL----EGHTLG 349
Sbjct: 291 ---- 346
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIET 380
Sbjct: 347 -- 375
Score = 39.9 bits (94), Expect = 0.002
Identities = 3/36 (8%), Positives = 5/36 (13%), Gaps = 2/36 (5%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ V T I+
Sbjct: 18 DIQMMLAADVHLGTKNCDFQM--ERYVYKRRTDGIY 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 126 bits (318), Expect = 3e-32
Identities = 61/298 (20%), Positives = 99/298 (33%), Gaps = 54/298 (18%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ V C ++P G +A G D I+++ + + L GHT ++
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
+ D+ +V D +W+IET + H+ + S S D FV G
Sbjct: 151 FLDDNQ--IVTSSGD-TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGA-- 203
Query: 414 GQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSNLLQED 472
CD LW +G H I F + N
Sbjct: 204 -----CD------------ASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAF--- 241
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQD- 530
+ + DAT RL +DLR L + I S F ++
Sbjct: 242 ---ATGSDDATCRL------------FDLRADQELMTYSH-DNIICGITSVSF---SKSG 282
Query: 531 -FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ +G +D +W + L+GH VSC+ +A+ S D ++IW
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339
Score = 89.5 bits (223), Expect = 1e-19
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ T H +V +PD +G+ D + +WDV R+T GH +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDIN 230
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
+ + P+ + G +D ++++ + L + + +TS S+++ G + G
Sbjct: 231 AICFFPNGNA-FATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Score = 84.1 bits (209), Expect = 7e-18
Identities = 53/273 (19%), Positives = 88/273 (32%), Gaps = 77/273 (28%)
Query: 288 EFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHT 347
E ++ L H + C+F D ++ T S DTT +WD++ T Q T GHT
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE----TGQQTTTFTGHT 184
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGTK 406
V L+ +PD+ V G D +W++ + R H + + + +G
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACD-ASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNA 240
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
F G S + R L+ D + TY+ +++
Sbjct: 241 FATG-----------------SDDATCR---LF---D------LRADQELMTYSHDNIIC 271
Query: 466 SNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQGVTQGQFTI 520
+ S F+ L + ++WD G
Sbjct: 272 G--------ITSVSFSKSGR-LLL----AGYDDFNCNVWDALKADRAGVLAG-------- 310
Query: 521 HS------CFGGANQD--FVASGSEDGKVYIWH 545
H D VA+GS D + IW+
Sbjct: 311 HDNRVSCLGV---TDDGMAVATGSWDSFLKIWN 340
Score = 81.4 bits (202), Expect = 7e-17
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
T + L H +++ + D L + S+D +IIWD T + + V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY----TTNKVHAIPLRSSWVM 101
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-----HSPEDSLTSCSWNRDGT 405
A++P ++ + G D + ++N++T V+++ H+ L+ C + D
Sbjct: 102 TCAYAPSGNY-VACGGLD-NICSIYNLKTREGNVRVSRELAGHT--GYLSCCRFLDDNQ 156
Score = 69.9 bits (172), Expect = 4e-13
Identities = 41/269 (15%), Positives = 76/269 (28%), Gaps = 43/269 (15%)
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTS 397
Q + L+ S + V I+ R H + +
Sbjct: 9 QEAEQLKNQIRDARKACADATLSQITNNIDP------VGRIQMRTRRTLRGHL--AKIYA 60
Query: 398 CSWNRDGTKFVCGGIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHR 454
W D + G+ D + + V G V +
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 455 IRTYNFEHLTDSNLLQE-----DHPVMS--FTIDATDRLALLNVSTQG---VHLWDLRDR 504
YN + + + + F D +++ V++ G LWD+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI----VTSSGDTTCALWDIETG 174
Query: 505 ILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGH 558
F G H+ + SG+ D +W V+ + T +GH
Sbjct: 175 QQTTTFTG--------HTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 559 TRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ + + P A+ SDD T R++
Sbjct: 226 ESDINAICFFPNG-NAFATGSDDATCRLF 253
Score = 29.4 bits (67), Expect = 3.1
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNT 593
L R + Q+ ++ D RI T
Sbjct: 11 AEQLKNQIRDARKACADATLSQITNNI--DPVGRIQMRTRRT 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 126 bits (320), Expect = 3e-32
Identities = 50/326 (15%), Positives = 100/326 (30%), Gaps = 84/326 (25%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L+ H +W TGS D ++ +WDV Q T + V +
Sbjct: 68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS----NGQCVATWKSPV-PVKRVE 122
Query: 355 WSPDSSHLLVVGPEDCHELW----VWNIET------------ELLRVKLNHSPEDSLTSC 398
+SP ++ + ++ + ++ IE E + + H D+ T
Sbjct: 123 FSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRT 457
W+ G + G +G + + S+ + + H
Sbjct: 182 GWSTKGKYIIAG-----------------HKDGKIS---KYDVSNNYEYVDSIDLH---- 217
Query: 458 YNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQG 512
+ + F+ D T ++ L D+ +L+K++
Sbjct: 218 --------------EKSISDMQFSPDLT-YFI----TSSRDTNSFLVDVSTLQVLKKYET 258
Query: 513 VTQ---------GQFTIHSCFGGANQDF--VASGSEDGKVYIWHVKRELPIATLSGHTRT 561
+F I G +D ++ + +H E I + GH
Sbjct: 259 DCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP 317
Query: 562 VSCVAWNPVYHQMIASVSDDCTVRIW 587
++ VA +P AS +D +R+
Sbjct: 318 LNTVAISPQ-GTSYASGGEDGFIRLH 342
Score = 117 bits (295), Expect = 6e-29
Identities = 30/321 (9%), Positives = 79/321 (24%), Gaps = 62/321 (19%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
L H + K++ +G L + SKD++ +W + TL+GHT + +
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL----NGERLGTLDGHTGTIWSI 80
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
+ + V G D + +W++ + ++ G F+
Sbjct: 81 DVDCFTKY-CVTGSADYS-IKLWDVSNGQCVATWKS--PVPVKRVEFSPCGNYFLAILDN 136
Query: 414 GQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDH 473
I ++ + + +
Sbjct: 137 VMKNPGSI--------------NIYEIERDSATHELTKVSEEPIHKIITHEGLD------ 176
Query: 474 PVMSFTIDATDRLALLNVST---QGVHLWDLRD-RILLRKFQG----VTQGQFTIHSCFG 525
+ ++ + +D+ + + ++ QF+
Sbjct: 177 AATVAGWSTKGKYI---IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS------ 227
Query: 526 GANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP-------------VYH 572
+ + + S D ++ V + ++ P
Sbjct: 228 -PDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFIILGGGQEAKDV 285
Query: 573 QMIASVSDDCTVRIWGPHLNT 593
++ R + H
Sbjct: 286 TTTSANEGKFEARFY--HKIF 304
Score = 110 bits (277), Expect = 2e-26
Identities = 35/288 (12%), Positives = 88/288 (30%), Gaps = 57/288 (19%)
Query: 313 GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE 372
G + ++ + L GH + + ++ + LL +D
Sbjct: 2 GSSHHHHHHSSGENLYFQG----SHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSS- 55
Query: 373 LWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG 431
VW E L H+ ++ S + V G S +
Sbjct: 56 ASVWYSLNGERLGTLDGHT--GTIWSIDVDCFTKYCVTG-----------------SADY 96
Query: 432 -VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLN 490
++ LW S+G+ V + ++ F N ++ +
Sbjct: 97 SIK---LWDVSNGQCVATWKSPVPVKRVEFSP--CGNYF------LAILDNVMK------ 139
Query: 491 VSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQ----------DFVASGSEDGK 540
+ ++++++ + V++ G + ++ +G +DGK
Sbjct: 140 -NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 541 VYIWHVK-RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + V + ++ H +++S + ++P + S D +
Sbjct: 199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLV 245
Score = 85.3 bits (212), Expect = 5e-18
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 20/133 (15%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
E ++ H + +FSPD T S+DT + DV T Q K E +
Sbjct: 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS----TLQVLKKYETDC-PLN 263
Query: 352 YLAWSPDSSHLLVVGPEDCHELW------------VWNIETELLRVKLN-HSPEDSLTSC 398
+P +++ G ++ ++ ++ E ++ H L +
Sbjct: 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF--GPLNTV 321
Query: 399 SWNRDGTKFVCGG 411
+ + GT + GG
Sbjct: 322 AISPQGTSYASGG 334
Score = 73.4 bits (181), Expect = 3e-14
Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFT-CQHRKTLEGHTLG 349
+ ++ D +S G + G KD + +DV ++ +++ H
Sbjct: 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKS 220
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
++ + +SPD ++ + D + ++ ++ T ++L+ P L + +
Sbjct: 221 ISDMQFSPDLTY-FITSSRDTN-SFLVDVSTLQVLKKYETDCP---LNTAVITPLKEFII 275
Query: 409 CGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSV 446
GG Q + + EG + + + +
Sbjct: 276 LGG-----GQEAKDVTTTSANEGKFEARFYHKIFEEEI 308
Score = 56.1 bits (136), Expect = 1e-08
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 282 HLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK 341
H +EE + H + SP G A+G +D + + +
Sbjct: 301 HKIFEEEI-----GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE----KSYFDF 351
Query: 342 TLEGHT 347
+
Sbjct: 352 KYDVEK 357
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 126 bits (319), Expect = 8e-32
Identities = 77/337 (22%), Positives = 118/337 (35%), Gaps = 80/337 (23%)
Query: 279 LVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQ 338
L D ++ T + FSPDG LATG++D + IWD++ +
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE----NRK 156
Query: 339 HRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSC 398
L+GH + L + P LV G D + +W++ T + L+ ED +T+
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDK-LVSGSGD-RTVRIWDLRTGQCSLTLSI--EDGVTTV 212
Query: 399 SW-NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIR 456
+ DG G S + VR +W D ++T +
Sbjct: 213 AVSPGDGKYIAAG-----------------SLDRAVR---VW---D------SETGFLVE 243
Query: 457 TYNFEHLTDSNLLQEDH--PVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILL 507
L N H V S FT D + S + V LW+L++
Sbjct: 244 R-----LDSENESGTGHKDSVYSVVFTRDGQ-SVV----SGSLDRS--VKLWNLQNANNK 291
Query: 508 RKFQGVTQGQ----FTIHS------CFGGANQD--FVASGSEDGKVYIWHVKRELPIATL 555
+ G + H Q+ ++ SGS+D V W K P+ L
Sbjct: 292 SDSKTPNSGTCEVTYIGHKDFVLSVAT---TQNDEYILSGSKDRGVLFWDKKSGNPLLML 348
Query: 556 SGHTRTVSCVAWNPVYH-----QMIASVSDDCTVRIW 587
GH +V VA + A+ S DC RIW
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 106 bits (266), Expect = 7e-25
Identities = 67/331 (20%), Positives = 98/331 (29%), Gaps = 89/331 (26%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY-- 352
DH V KFS DG LATG + T ++ V L +
Sbjct: 58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS----DGSLVARLSDDSAANKDPE 112
Query: 353 ----------------LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSL 395
+ +SPD L G ED + +W+IE + + L H +
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFL-ATGAEDRL-IRIWDIENRKIVMILQGHE--QDI 168
Query: 396 TSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHR 454
S + G K V G S + VR +W G+ L
Sbjct: 169 YSLDYFPSGDKLVSG-----------------SGDRTVR---IWDLRTGQCSLTLSIEDG 208
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
+ T D + + ++D V +WD L+ +
Sbjct: 209 VTTVAV-SPGDGKYI------AAGSLDRA------------VRVWDSETGFLVERLDSEN 249
Query: 515 QGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRELP------------IATLS 556
+ T H F + V SGS D V +W+++ T
Sbjct: 250 E-SGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 557 GHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
GH V VA + I S S D V W
Sbjct: 308 GHKDFVLSVATTQN-DEYILSGSKDRGVLFW 337
Score = 95.8 bits (239), Expect = 2e-21
Identities = 51/306 (16%), Positives = 87/306 (28%), Gaps = 93/306 (30%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV---DPVTFTCQHRKTLEGHTLGVA 351
+H + D + K T + +
Sbjct: 9 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD------ 62
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
H V ++ DG G
Sbjct: 63 -------------------HTSVVC--------------------CVKFSNDGEYLATG- 82
Query: 412 IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
+ + ++ SDG ++A + + E+L S+
Sbjct: 83 ----------------CNKTTQ---VYRVSDGS-LVARLSDDSAANKDPENLNTSSSPSS 122
Query: 472 DHPVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQGVTQGQFTIHS-C 523
D + S F+ D LA + + +WD+ +R ++ QG Q I+S
Sbjct: 123 DLYIRSVCFSPDGK-FLA----TGAEDRL--IRIWDIENRKIVMILQGHEQD---IYSLD 172
Query: 524 FGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDD 581
+ + SGS D V IW ++ TLS V+ VA +P + IA+ S D
Sbjct: 173 Y---FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLD 228
Query: 582 CTVRIW 587
VR+W
Sbjct: 229 RAVRVW 234
Score = 81.5 bits (202), Expect = 9e-17
Identities = 65/276 (23%), Positives = 95/276 (34%), Gaps = 67/276 (24%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+L H +++ + P G KL +GS D TV IWD+ T Q TL GV +A
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR----TGQCSLTLSIED-GVTTVA 213
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPE------DSLTSCSWNRDGTKFV 408
SP + G D + VW+ ET L +L+ E DS+ S + RDG V
Sbjct: 214 VSPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 409 CGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSN 467
G S + V+ LW + + + +
Sbjct: 273 SG-----------------SLDRSVK---LW-----------NLQNANNKSDSKTPNSGT 301
Query: 468 LLQ--EDH--PVMS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQG----VT 514
H V+S T + + S +GV WD + L QG V
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDE-YIL----SGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 515 QGQFTIHSCFGGANQD--FVASGSEDGKVYIWHVKR 548
+ + A+GS D K IW K+
Sbjct: 357 SVAV---ANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 73.0 bits (180), Expect = 5e-14
Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 92/307 (29%)
Query: 341 KTLEGHTLGVAYLAWSPDSSHLLVVGPEDCH-ELW-VWNIET-----ELLRVKLNHSPED 393
H+ + DS + + + + ++N L L+H+
Sbjct: 9 NQRANHSKPIPPFLLDLDSQSV-PDALKKQTNDYYILYNPALPREIDVELHKSLDHT--S 65
Query: 394 SLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHH 453
+ ++ DG G + + ++ SDG ++A +
Sbjct: 66 VVCCVKFSNDGEYLATG-----------------CNKTTQ---VYRVSDGS-LVARLSDD 104
Query: 454 RIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRIL 506
+ E+L S+ D + S F+ D LA + + +WD+ +R +
Sbjct: 105 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLA----TGAEDRL--IRIWDIENRKI 157
Query: 507 LRKFQG------------------------------VTQGQ----FTIHS-----CFGGA 527
+ QG + GQ +I
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATL-------SGHTRTVSCVAWNPVYHQMIASVSD 580
+ ++A+GS D V +W + + L +GH +V V + Q + S S
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSL 276
Query: 581 DCTVRIW 587
D +V++W
Sbjct: 277 DRSVKLW 283
Score = 47.6 bits (114), Expect = 7e-06
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 292 ETTQVLNDHCDEVWFCKFS------PDGLKLATGSKDTTVIIWDVD 331
+L H + V + P+ ATGS D IW
Sbjct: 343 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 46.8 bits (112), Expect = 1e-05
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 550 LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+P + H++ + + Q + T +
Sbjct: 6 VPYNQRANHSKPIPPFLLDL-DSQSVPDALKKQTNDYY 42
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 125 bits (317), Expect = 2e-31
Identities = 54/305 (17%), Positives = 95/305 (31%), Gaps = 89/305 (29%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
E + ++ H V P+G + + S+D T+ +W+V T KT GH V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVR 238
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
+ + D + L+ D + VW + T E H + SW + +
Sbjct: 239 MVRPNQDGT-LIASCSND-QTVRVWVVATKECKAELREH--RHVVECISWAPESSYSS-- 292
Query: 411 GIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
E G +L+ S
Sbjct: 293 -----------------ISEATGSETKKSGKPGPFLLSG----------------SR--- 316
Query: 471 EDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS------CF 524
D T + +WD+ + L G H F
Sbjct: 317 ----------DKT------------IKMWDVSTGMCLMTLVG--------HDNWVRGVLF 346
Query: 525 --GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDC 582
GG F+ S ++D + +W K + + TL+ H V+ + ++ + + S D
Sbjct: 347 HSGGK---FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQ 402
Query: 583 TVRIW 587
TV++W
Sbjct: 403 TVKVW 407
Score = 123 bits (310), Expect = 1e-30
Identities = 60/318 (18%), Positives = 108/318 (33%), Gaps = 79/318 (24%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L+ H V F P + + S+D T+ +WD + T +TL+GHT V ++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE----TGDFERTLKGHTDSVQDIS 157
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG-- 411
+ L D + +W+ + E +R H +++S S +G V
Sbjct: 158 FDHSGKL-LASCSAD-MTIKLWDFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRD 213
Query: 412 --IRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDS 466
I+ +++ G + ++ G V + DG + + S
Sbjct: 214 KTIK----MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC----------------S 253
Query: 467 NLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQG-------------- 512
N D T R+ W + + + +
Sbjct: 254 N-------------DQTVRV------------WVVATKECKAELREHRHVVECISWAPES 288
Query: 513 ---VTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP 569
+ G F+ SGS D + +W V + + TL GH V V ++
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 570 VYHQMIASVSDDCTVRIW 587
+ I S +DD T+R+W
Sbjct: 349 G-GKFILSCADDKTLRVW 365
Score = 99.2 bits (248), Expect = 2e-22
Identities = 61/326 (18%), Positives = 97/326 (29%), Gaps = 112/326 (34%)
Query: 303 EVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHL 362
E + + + W P + L GH V + + P S
Sbjct: 69 ESKLNEAKEEFTSGGPLGQKRDPKEWIPRP-----PEKYALSGHRSPVTRVIFHPVFSV- 122
Query: 363 LVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDI 421
+V ED + VW+ ET + R H+ DS+ S++ G
Sbjct: 123 MVSASEDAT-IKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASC----------- 168
Query: 422 EGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMSFT 479
S + ++ LW D IRT H DH V S
Sbjct: 169 ------SADMTIK---LW---D------FQGFECIRT--MHGH---------DHNVSS-- 197
Query: 480 IDATDRLALLNVSTQG-----------VHLWDLRDRILLRKFQGVTQGQFTIHS------ 522
+++ G + +W+++ ++ F G H
Sbjct: 198 ---------VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG--------HREWVRMV 240
Query: 523 CFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH-------- 572
NQD +AS S D V +W V + A L H V C++W P
Sbjct: 241 RP---NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297
Query: 573 -----------QMIASVSDDCTVRIW 587
+ S S D T+++W
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 65.7 bits (161), Expect = 2e-11
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 505 ILLRKFQGVTQGQFTI---HSCFGGANQDFV--ASGSEDGKVYIWHVKRELPIATLSGHT 559
+L +K+ V + Q + S A ++F + W + LSGH
Sbjct: 50 LLEKKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPE-KYALSGHR 108
Query: 560 RTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V+ V ++PV+ ++ S S+D T+++W
Sbjct: 109 SPVTRVIFHPVF-SVMVSASEDATIKVW 135
Score = 53.4 bits (129), Expect = 1e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
+ LN H V F + TGS D TV +W+
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 123 bits (310), Expect = 2e-31
Identities = 56/316 (17%), Positives = 95/316 (30%), Gaps = 56/316 (17%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
V H D + + G +LAT S D +V I+DV L GH V +A
Sbjct: 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR--NGGQILIADLRGHEGPVWQVA 64
Query: 355 WSPDSS-HLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW--NRDGTKFVCG 410
W+ ++L D + +W E + + + S+ S W + G CG
Sbjct: 65 WAHPMYGNILASCSYDRK-VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 411 G----IRGQFYQCDIEGQVLDSWEG--VRVNCL-WCRSDGKSVLAADTHHRIRTYNFEHL 463
I Y + + +V + N + W D + +
Sbjct: 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA-PAVVPGSLIDHPSGQKPNYIKRF 182
Query: 464 -TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDL---RDRILLRKFQGVTQGQFT 519
+ D + LW +K + +
Sbjct: 183 ASGGC-------------DNL------------IKLWKEEEDGQWKEEQKLEAHSD---W 214
Query: 520 IHS-CF---GGANQDFVASGSEDGKVYIWHVK----RELPIATLSGHTRTVSCVAWNPVY 571
+ + G +AS S+DG+V+IW L V V+W+
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT- 273
Query: 572 HQMIASVSDDCTVRIW 587
++A D V +W
Sbjct: 274 ANILAVSGGDNKVTLW 289
Score = 76.1 bits (188), Expect = 3e-15
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 294 TQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
L H VW ++ G LA+ S D VIIW + T + GH V
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE--NGTWEKSHEHAGHDSSVN 107
Query: 352 YLAWSPDSSHLLVV-GPEDCHELWVWNIET----ELLRVKLNHSPEDSLTSCSWNRDGT 405
+ W+P L++ G D + + E+ ++ H+ + SW
Sbjct: 108 SVCWAPHDYGLILACGSSDGA-ISLLTYTGEGQWEVKKINNAHT--IGCNAVSWAPAVV 163
Score = 72.3 bits (178), Expect = 5e-14
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 291 CETTQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
E + H V ++P GL LA GS D + + + +K HT+
Sbjct: 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTI 151
Query: 349 GVAYLAWSPDSSH 361
G ++W+P
Sbjct: 152 GCNAVSWAPAVVP 164
Score = 69.2 bits (170), Expect = 5e-13
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 25/143 (17%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGL-----------------KLATGSKDTTVIIWDVDPVT 334
E ++ N H ++P + + A+G D + +W +
Sbjct: 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE-D 199
Query: 335 FTCQHRKTLEGHTLGVAYLAWSPD---SSHLLVVGPEDCHELWVWNIETELLRVKLNHSP 391
+ + LE H+ V +AW+P + + +D +++W +
Sbjct: 200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDASSNTWSPKLL 258
Query: 392 E---DSLTSCSWNRDGTKFVCGG 411
D + SW+ G
Sbjct: 259 HKFNDVVWHVSWSITANILAVSG 281
Score = 69.2 bits (170), Expect = 5e-13
Identities = 43/283 (15%), Positives = 73/283 (25%), Gaps = 80/283 (28%)
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLN-HSPEDSLT 396
H + + L D + ++++ ++L L H +
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTR-LATCSSDRS-VKIFDVRNGGQILIADLRGHE--GPVW 61
Query: 397 SCSWNRDGTKFVCGGIRGQFYQCDIEGQVL--DSWEG-VRVNCLWCRSDGKSVLAADTHH 453
+W G +L S++ V +W +G
Sbjct: 62 QVAWAHPM-----------------YGNILASCSYDRKVI---IWREENGTWE------- 94
Query: 454 RIRTYNFE-HLTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDRI-- 505
+++ H D V S + A L+ + L
Sbjct: 95 --KSHEHAGH---------DSSVNSVCW---APHDYGLILACGSSDGAISLLTYTGEGQW 140
Query: 506 -LLRKFQGVTQG--------------QFTIHSCFGGANQDFVASGSEDGKVYIWHVK--- 547
+ + T G S ASG D + +W +
Sbjct: 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200
Query: 548 RELPIATLSGHTRTVSCVAWNP---VYHQMIASVSDDCTVRIW 587
+ L H+ V VAW P + IAS S D V IW
Sbjct: 201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Score = 68.1 bits (167), Expect = 1e-12
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 295 QVLNDHCDEVWFCKFSPD----GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
Q L H D V ++P +A+ S+D V IW D + K L V
Sbjct: 206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV 265
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETE 381
+++WS ++ +L V D ++ +W +
Sbjct: 266 WHVSWSITAN-ILAVSGGDN-KVTLWKESVD 294
Score = 63.8 bits (156), Expect = 4e-11
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 21/92 (22%)
Query: 532 VASGSEDGKVYIWHVKRELP---IATLSGHTRTVSCVAWNP----------------VYH 572
+A GS DG + + E + HT + V+W P Y
Sbjct: 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI 179
Query: 573 QMIASVSDDCTVRIWGPHLNTNKSPHLASSLT 604
+ AS D +++W + L
Sbjct: 180 KRFASGGCDNLIKLW--KEEEDGQWKEEQKLE 209
Score = 62.3 bits (152), Expect = 1e-10
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+ ++L+ D VW +S LA D V +W + G
Sbjct: 254 SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES----VDGQWVCISDVNKGQGS 309
Query: 353 LAWSPD 358
++ S
Sbjct: 310 VSASVT 315
Score = 50.0 bits (120), Expect = 9e-07
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLAS 601
+ H + + Y +A+ S D +V+I+ + +A
Sbjct: 8 VDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIF--DVRNGGQILIAD 52
Score = 40.3 bits (95), Expect = 0.001
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP 569
+A D KV +W + +S + V+ +
Sbjct: 277 LAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 123 bits (311), Expect = 4e-31
Identities = 59/307 (19%), Positives = 108/307 (35%), Gaps = 65/307 (21%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTF--TCQHRKTLEGHTLGVAY 352
+ C V C ++P G +A G D ++ + +K++ HT ++
Sbjct: 100 HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW--NRDGTKFVC 409
+++ + + D +W++E+ +LL+ H + + G FV
Sbjct: 160 CSFTNSDMQI-LTASGD-GTCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVS 215
Query: 410 GGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSNL 468
GG CD + +W G+ V A +TH + + + +
Sbjct: 216 GG-------CD---------KKAM---VWDMRSGQCVQAFETHESDVNSVRYYP--SGDA 254
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGAN 528
S + DAT L+DLR + + S GA+
Sbjct: 255 F------ASGSDDAT------------CRLYDLRADREVAIYSK--------ESIIFGAS 288
Query: 529 Q-DF------VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDD 581
DF + +G D + +W V + ++ L GH VS + +P S S D
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD-GTAFCSGSWD 347
Query: 582 CTVRIWG 588
T+R+W
Sbjct: 348 HTLRVWA 354
Score = 111 bits (280), Expect = 5e-27
Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 95/324 (29%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+T + L H ++V + D ++ + S+D VI+WD T + V
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF----TTNKEHAVTMPCTWVM 110
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-------ELLRVKLNHSPEDSLTSCSWNRDG 404
A++P + G D ++ V+ + + H+ + L++CS+
Sbjct: 111 ACAYAPS-GCAIACGGLD-NKCSVYPLTFDKNENMAAKKKSVAMHT--NYLSACSFTNSD 166
Query: 405 TKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHL 463
+ + S +G LW D ++ ++++
Sbjct: 167 MQILTA-----------------SGDGTCA---LW---D------VESGQLLQSF----- 192
Query: 464 TDSNLLQEDH--PVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQGVT 514
H V+ T VS +WD+R ++ F+
Sbjct: 193 -------HGHGADVLCLDLAPSETGNTF---VSGGCDKK--AMVWDMRSGQCVQAFET-- 238
Query: 515 QGQFTIHS------CF---GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRT--VS 563
H + G D ASGS+D ++ ++ + +A S + S
Sbjct: 239 ------HESDVNSVRYYPSG----DAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 564 CVAWNPVYHQMIASVSDDCTVRIW 587
V ++ +++ + +D T+ +W
Sbjct: 289 SVDFSLS-GRLLFAGYNDYTINVW 311
Score = 110 bits (277), Expect = 1e-26
Identities = 53/320 (16%), Positives = 90/320 (28%), Gaps = 81/320 (25%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD----------PVTFTCQHRKTLE 344
+ + + L ++ + DV+ F + R+TL+
Sbjct: 2 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 61
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRD 403
GH V + W D +V +D ++ VW+ T + +C++
Sbjct: 62 GHGNKVLCMDWCKDKRR-IVSSSQD-GKVIVWDSFTTNKEHAVTMPC--TWVMACAYAPS 117
Query: 404 GTKFVCGG----IR---GQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHR 454
G CGG F + + S ++ + +
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-------- 169
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
LT S D T LWD+ LL+ F G
Sbjct: 170 --------LTASG-------------DGT------------CALWDVESGQLLQSFHG-- 194
Query: 515 QGQFTIHS------CF-GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAW 567
H + SG D K +W ++ + H V+ V +
Sbjct: 195 ------HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 568 NPVYHQMIASVSDDCTVRIW 587
P AS SDD T R++
Sbjct: 249 YPSG-DAFASGSDDATCRLY 267
Score = 70.7 bits (174), Expect = 2e-13
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
FS G L G D T+ +WDV L GH V
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL----KGSRVSILFGHENRV 329
Query: 351 AYLAWSPDSSHL 362
+ L SPD +
Sbjct: 330 STLRVSPDGTAF 341
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 123 bits (311), Expect = 1e-30
Identities = 40/305 (13%), Positives = 92/305 (30%), Gaps = 54/305 (17%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
+ +S + +A + ++ ++ + H+ V + ++
Sbjct: 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ 125
Query: 360 SHLLVVGPEDCHELWVWNIET--------ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
++L G + E+++W++ L + S D + S +WN+
Sbjct: 126 DNVLASGGNN-GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 412 IRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
+W K V+ HL+ ++
Sbjct: 185 ----------------GSSNFAS---IWDLKAKKEVI--------------HLSYTSPNS 211
Query: 471 E-DHPVMS--FTIDATDRLALLNVST--QGVHLWDLRD--RILLRKFQGVTQGQFTIHS- 522
+ + + R+A S + +WDLR+ L QG +G I S
Sbjct: 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---ILSL 268
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDC 582
+ ++ + S D V +W+ + ++ + P + A S D
Sbjct: 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 583 TVRIW 587
+ +
Sbjct: 329 KIEVQ 333
Score = 112 bits (282), Expect = 8e-27
Identities = 43/309 (13%), Positives = 94/309 (30%), Gaps = 61/309 (19%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL--GVAYLAWSP 357
H + G A S D+++ +W + K + + L WS
Sbjct: 22 HDKIPLLVSGTVSGTVDANFSTDSSLELWSLL----AADSEKPIASLQVDSKFNDLDWSH 77
Query: 358 DSSHLLVVGPEDCHELWVWNIET-----ELLRVKLNHSPEDSLTSCSWN-RDGTKFVCGG 411
+ + ++ ++ L +++ + NHS S+ + +N + G
Sbjct: 78 N-NKIIAGALDN-GSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNAKQDNVLASG- 132
Query: 412 IRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
G + +W + + T +
Sbjct: 133 ----------------GNNGEIF---IWDMNKCTESPSNYTPLTPGQ----------SMS 163
Query: 471 EDHPVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCFG-- 525
V+S + A + + +WDL+ + + +
Sbjct: 164 SVDEVISLAWNQSLAHVFA--SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE 221
Query: 526 ----GANQDFVASGSE-DGKVYIWHVK-RELPIATLS-GHTRTVSCVAWNPVYHQMIASV 578
+ + A+GS+ D + IW ++ P+ TL+ GH + + + W ++ S
Sbjct: 222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281
Query: 579 SDDCTVRIW 587
D TV +W
Sbjct: 282 GRDNTVLLW 290
Score = 92.8 bits (231), Expect = 3e-20
Identities = 44/331 (13%), Positives = 89/331 (26%), Gaps = 82/331 (24%)
Query: 295 QVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVD-----PVTFTCQHRKTLEGHTL 348
++H V KF+ LA+G + + IWD++ P +T
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP-----EDSLTSCSWNRD 403
V LAW+ +H+ +W+++ + + L+++ + L+ W+
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNF-ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 404 GTKFVCGGIRGQFYQC----DIEG-----QVLDSWEGVRVNCL-WCRSDGKSVLAADTHH 453
+ V D+ Q L+ + L WC D +L++ +
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 454 RIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGV 513
+ LW+ L +F
Sbjct: 286 TVL-----------------------------------------LWNPESAEQLSQFPAR 304
Query: 514 TQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQ 573
F F D A S D K+ + ++ ++ N + Q
Sbjct: 305 GNWCFKT--KFAPEAPDLFACASFDNKIEVQTLQ-------------NLT----NTLDEQ 345
Query: 574 MIASVSDDCTVRIWGPHLNTNKSPHLASSLT 604
+ + W +
Sbjct: 346 ETETKQQESETDFWNNVSREESKEKPSVFHL 376
Score = 85.5 bits (212), Expect = 5e-18
Identities = 37/298 (12%), Positives = 88/298 (29%), Gaps = 64/298 (21%)
Query: 319 GSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNI 378
G+ + V + + H ++ + + + D L +W++
Sbjct: 1 GAMGSMVKLAEFS----RTAT--FAWSHDKIPLLVSGTVSGT-VDANFSTD-SSLELWSL 52
Query: 379 ET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNC 436
+ + + + W+ + G +
Sbjct: 53 LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-----------------LDNGSLE--- 92
Query: 437 LWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG- 495
L+ ++ + + + + ++ H V + +A L + G
Sbjct: 93 LYSTNEANNAINS-----MARFS-NH---------SSSVKTVKFNAKQDNVLASGGNNGE 137
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKR 548
+ +WD+ + +T GQ + + AS IW +K
Sbjct: 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197
Query: 549 ELPIATLS------GHTRTVSCVAWNPVYHQMIASVS---DDCTVRIWGPHLNTNKSP 597
+ + LS G + +S V W+P +A+ + +D ++ IW L +P
Sbjct: 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW--DLRNANTP 253
Score = 78.5 bits (194), Expect = 9e-16
Identities = 36/284 (12%), Positives = 76/284 (26%), Gaps = 44/284 (15%)
Query: 284 CTKEEFPCETTQVLNDHCDEVWFCKFSPDGLK-LATGSKDTTVIIWDVD---PVTFTCQH 339
+ + T DEV ++ A+ IWD+ V +
Sbjct: 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSY 206
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE--LWVWNIET---ELLRVKLNHSPEDS 394
G ++ + W P +S + ++ + +W++ L + H
Sbjct: 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ--KG 264
Query: 395 LTSCSWN-RDGTKFVCGG----IRGQFYQC-DIE-GQVLDSWEGV--RVNCL-WCRSDGK 444
+ S W +D + G + + E + L + + +
Sbjct: 265 ILSLDWCHQDEHLLLSSGRDNTVL-----LWNPESAEQLSQFPARGNWCFKTKFAP-EAP 318
Query: 445 SVLA---ADTHHRIRTYNFEHLTDSNLLQEDHPV-MSFTIDATDRLALLNVSTQGVHLWD 500
+ A D ++I ++LT++ QE D + ++ +
Sbjct: 319 DLFACASFD--NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376
Query: 501 LRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIW 544
FGG V + V I
Sbjct: 377 QAPTWYGEPSPAAHWA-------FGG---KLVQITPDGKGVSIT 410
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 122 bits (309), Expect = 2e-30
Identities = 53/322 (16%), Positives = 92/322 (28%), Gaps = 54/322 (16%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
T + + H V ++ P D + S D T+ +WD + T Q
Sbjct: 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN----TLQTADVF 138
Query: 344 EGHTLGVAYLAWSPDSSH--LLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW 400
V SP S+ L+ VG + + ++++ + H + + SW
Sbjct: 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPK-VQLCDLKSGSCSHILQGHR--QEILAVSW 194
Query: 401 NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYN 459
+ + S + V+ LW L H +
Sbjct: 195 SPRYDYILATA----------------SADSRVK---LWDVRRASGCLITLDQHNGKKSQ 235
Query: 460 FEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQG 512
+ V FT D L + + LW+ + G
Sbjct: 236 AVESA---NTAHNGKVNGLCFTSDGL-HLL----TVGTDNR--MRLWNSSNGENTLVNYG 285
Query: 513 VTQGQFTIH---SCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP 569
+ G + + + ++ V I L GH +TV C +
Sbjct: 286 KVCNNSKKGLKFTVSCGCSSE-FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344
Query: 570 VYHQMIASVSDDCTVRIWGPHL 591
Q + S S DC + W P L
Sbjct: 345 -NFQELYSGSRDCNILAWVPSL 365
Score = 120 bits (304), Expect = 9e-30
Identities = 44/317 (13%), Positives = 94/317 (29%), Gaps = 72/317 (22%)
Query: 297 LNDHCDEVWFCKFSPDG---LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
+ + + V+ SP +A G++ V + D+ + L+GH + +
Sbjct: 137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK----SGSCSHILQGHRQEILAV 192
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSP-------------EDSLTSC 398
+WSP ++L D + +W++ L H+ +
Sbjct: 193 SWSPRYDYILATASAD-SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251
Query: 399 SWNRDGTKFVCGG----IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHR 454
+ DG + G +R LW S+G++ L
Sbjct: 252 CFTSDGLHLLTVGTDNRMR-----------------------LWNSSNGENTLVNYGK-- 286
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
+N + +S + + + ++ + + +G
Sbjct: 287 ---------VCNNSKKGLKFTVSCGCSS--EFVFV-PYGSTIAVYTVYSGEQITMLKGHY 334
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQM 574
+ T+ C +N + SGS D + W + T + NP + +
Sbjct: 335 K---TVDCCVFQSNFQELYSGSRDCNILAWVPSLY---EPVPDDDETTTKSQLNPAF-ED 387
Query: 575 IASVS-DDCTVRIWGPH 590
S S ++ W
Sbjct: 388 AWSSSDEEGGTSAWSHP 404
Score = 91.5 bits (228), Expect = 5e-20
Identities = 41/318 (12%), Positives = 87/318 (27%), Gaps = 93/318 (29%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
+ L ++T + ++ + R H G+ L P ++ G
Sbjct: 9 QTGLEDPLRLRRAESTRRVLGLE----LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS 64
Query: 369 DCHELWVWNIETELLRVKLNHSP------------EDSLTSCSWN-RDGTKFVCGGIRGQ 415
D + ++++E + S+ + W D F
Sbjct: 65 D-GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS----- 118
Query: 416 FYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHP 474
S++ ++ +W +T F +
Sbjct: 119 ------------SFDKTLK---VW---------DTNTLQTADV--FNF---------EET 143
Query: 475 VMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHS------CFG 525
V S + +T + + V L DL+ QG H +
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG--------HRQEILAVSWS 195
Query: 526 GANQDFVASGSEDGKVYIWHVKR----------------ELPIATLSGHTRTVSCVAWNP 569
+A+ S D +V +W V+R + + + H V+ + +
Sbjct: 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 570 VYHQMIASVSDDCTVRIW 587
+ +V D +R+W
Sbjct: 256 D-GLHLLTVGTDNRMRLW 272
Score = 75.4 bits (186), Expect = 1e-14
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
E +L H V C F + +L +GS+D ++ W + +
Sbjct: 325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP-------SLYEPVPDDDETTT 377
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET 380
+P ++ W+
Sbjct: 378 KSQLNPAFED-AWSSSDEEGGTSAWSHPQ 405
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 121 bits (306), Expect = 5e-30
Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 66/313 (21%)
Query: 300 HCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVD----------------PVTFTCQHRKT 342
D + ++P D LA G K++ + + + +
Sbjct: 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103
Query: 343 LEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNR 402
T V LAWS D + +V G E+ EL +WN LL V H + S WN+
Sbjct: 104 SGKTTNQVTCLAWSHDGNS-IVTGVEN-GELRLWNKTGALLNVLNFHR--APIVSVKWNK 159
Query: 403 DGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTH----HRIRT 457
DGT + E LW G + + I
Sbjct: 160 DGTHIISM-----------------DVENVTI---LWNVISGTVMQHFELKETGGSSINA 199
Query: 458 YNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQ 517
N + E F I + ++ + ++ K G
Sbjct: 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGA---------IFVYQITEKTPTGKLIGHHGP- 249
Query: 518 FTIHS-CFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQM 574
I F N + S S+DG + IWH GH++++ +W
Sbjct: 250 --ISVLEF---NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG--DDK 302
Query: 575 IASVSDDCTVRIW 587
+ S S D +VR+W
Sbjct: 303 VISCSMDGSVRLW 315
Score = 113 bits (286), Expect = 3e-27
Identities = 49/326 (15%), Positives = 92/326 (28%), Gaps = 93/326 (28%)
Query: 290 PCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLG 349
P + ++V +S DG + TG ++ + +W+ T L H
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-----TGALLNVLNFHRAP 151
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPE-------------DSL 395
+ + W+ D +H ++ + + +WN+ + +++
Sbjct: 152 IVSVKWNKDGTH-IISMDVE-NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLG 209
Query: 396 TSCSWNRDGTKFVCGGIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTH 452
W D KFV G +G + I G ++ L K +L+A
Sbjct: 210 VDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA--- 265
Query: 453 HRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQG 512
S+ D T + +W + F G
Sbjct: 266 -------------SD-------------DGT------------LRIWHGGNGNSQNCFYG 287
Query: 513 VTQGQFTIHSCFGGANQDFV-----------ASGSEDGKVYIWHVKRELPIATLSGHTRT 561
HS + S S DG V +W +K+ +A
Sbjct: 288 --------HS-------QSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332
Query: 562 VSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + Q A D V ++
Sbjct: 333 IFAGRISQ-DGQKYAVAFMDGQVNVY 357
Score = 113 bits (284), Expect = 4e-27
Identities = 52/314 (16%), Positives = 100/314 (31%), Gaps = 76/314 (24%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLG---VA 351
VLN H + K++ DG + + + I+W+V + + E G +
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI----SGTVMQHFELKETGGSSIN 198
Query: 352 YLAWSPDSSHL----------LVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSW 400
S D S V+ ++V+ I + KL H ++ +
Sbjct: 199 AENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIGHH--GPISVLEF 255
Query: 401 NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTH-HRIRTY 458
N + S +G +R +W +G S H I +
Sbjct: 256 NDTNKLLLSA-----------------SDDGTLR---IWHGGNGNSQNCFYGHSQSIVSA 295
Query: 459 NFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQG----VT 514
++ D V+S ++D + V LW L+ LL +
Sbjct: 296 SWVG---------DDKVISCSMDGS------------VRLWSLKQNTLLALSIVDGVPIF 334
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQ 573
G+ + + A DG+V ++ +K+ +L G+ + P+Y
Sbjct: 335 AGRIS-------QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387
Query: 574 MIASVSDDCTVRIW 587
+S +D +
Sbjct: 388 YQSSQDNDYIFDLS 401
Score = 90.8 bits (226), Expect = 1e-19
Identities = 43/314 (13%), Positives = 91/314 (28%), Gaps = 92/314 (29%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
D S D + + + + W+P +L G +
Sbjct: 18 TQEDDTNSIDSSDDLDGFVKILKEI-----------VKLDNIVSSTWNPLDESILAYGEK 66
Query: 369 DC--------------HELWVWNIETELLRVKLNHSP----EDSLTSCSWNRDGTKFVCG 410
+ + W I EL + + +T +W+ DG V G
Sbjct: 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126
Query: 411 G----IRGQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLT 464
+R + G +L+ + + DG +++ D +
Sbjct: 127 VENGELR----LWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI-------- 174
Query: 465 DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
LW++ +++ F+ G +I++
Sbjct: 175 ---------------------------------LWNVISGTVMQHFELKETGGSSINAEN 201
Query: 525 GGANQDFV-----------ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQ 573
+ G ++++ + + P L GH +S + +N ++
Sbjct: 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNK 260
Query: 574 MIASVSDDCTVRIW 587
++ S SDD T+RIW
Sbjct: 261 LLLSASDDGTLRIW 274
Score = 75.4 bits (186), Expect = 1e-14
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ ++ + S DG K A D V ++D+ + R +L G+ G+
Sbjct: 324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK--KLNSKSR-SLYGNRDGILNPL 380
Query: 355 WSPDSSHLLVVGPEDC-HELWVWNIETELLRVKL-NHS 390
P + D +L WN + V
Sbjct: 381 PIPLYASYQSSQDNDYIFDLS-WNCAGNKISVAYSLQE 417
Score = 53.8 bits (130), Expect = 7e-08
Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 525 GGANQDFVASGSEDGKVYIWHVK-RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCT 583
G + + + + + I + WNP+ ++A +
Sbjct: 10 GASTVERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSV 69
Query: 584 VRIW 587
R+
Sbjct: 70 ARLA 73
Score = 40.7 bits (96), Expect = 0.001
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 496 VHLWDLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYI-WHVKRELPIA 553
V+++DL+ R G G ++ + +S D + W+
Sbjct: 354 VNVYDLKKLNSKSRSLYGNRDG--ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411
Query: 554 TLSGHTRTVSCVA 566
S +V +
Sbjct: 412 AYSLQEGSVVAIP 424
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 122 bits (309), Expect = 2e-29
Identities = 58/309 (18%), Positives = 108/309 (34%), Gaps = 66/309 (21%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ ++ D V F P + T V IW+ + T ++++ V
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE----TQVEVRSIQVTETPVRAGK 62
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
+ + ++VG +D + V+N T E + H D + S + + + G
Sbjct: 63 FIARKNW-IIVGSDDFR-IRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSG--- 115
Query: 414 GQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
S + V+ LW + ++ H +
Sbjct: 116 --------------SDDLTVK---LWNWENNWALEQTFEGH------------------E 140
Query: 473 HPVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILLRK-FQGVTQGQFTIHSCF 524
H VM F A S T V +W L G +G + +
Sbjct: 141 HFVMCVAFNPKDPSTFA----SGCLDRT--VKVWSLGQSTPNFTLTTGQERGVNYV-DYY 193
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
++ ++ + S+D + IW + + +ATL GH VS ++P +I S S+D T+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTL 252
Query: 585 RIWGPHLNT 593
+IW + +T
Sbjct: 253 KIW--NSST 259
Score = 114 bits (288), Expect = 9e-27
Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 55/299 (18%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ + V KF + GS D + +++ + T E H + +A
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN--TGEKVV--DFEAHPDYIRSIA 104
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSPEDSLTSCSWN-RDGTKFVCGG 411
P + ++ G +D + +WN E L + H + ++N +D + F G
Sbjct: 105 VHPTKPY-VLSGSDD-LTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASG- 159
Query: 412 IRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHR--IRTYNFEHLTDSNL 468
+ V+V W T + ++ L D
Sbjct: 160 ----------------CLDRTVKV---WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGAN 528
+ ++ + D T + +WD + + + +G +
Sbjct: 201 M------ITASDDLT------------IKIWDYQTKSCVATLEGHMSN---VSFAVFHPT 239
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ SGSEDG + IW+ TL+ C+A +P + + D +
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 100 bits (250), Expect = 4e-22
Identities = 43/303 (14%), Positives = 84/303 (27%), Gaps = 39/303 (12%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L H V F F P + +GS+D T+ IW+ T + KTL +A
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS----TYKVEKTLNVGLERSWCIA 277
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNH------SPEDS-LTSCSWNRDGTKF 407
P + D + V ++ + + L+ S + S +
Sbjct: 278 THPTGRKNYIASGFD-NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSN 467
E +D + L +G+ V + + +
Sbjct: 337 EEVEQDEPLSLQTKELGSVDVF----PQSLAHSPNGRFVTVVGDGEYV-------IYTAL 385
Query: 468 LLQEDH--PVMSFTIDATD-RLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
+ F AL++ + Q + + + I F
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQ-IKYYKNFKEVTSWSVPMH----SAIDRLF 440
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
GA + DG VY + + + + V W+ +++ V+ +
Sbjct: 441 SGA----LLGVKSDGFVYFFDWDNGTLVRRIDVN---AKDVIWSDNG-ELVMIVNTNSNG 492
Query: 585 RIW 587
Sbjct: 493 DEA 495
Score = 88.6 bits (220), Expect = 2e-18
Identities = 51/344 (14%), Positives = 88/344 (25%), Gaps = 60/344 (17%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH-RKTLEGHTLGVAYL 353
H D + P + +GS D TV +W+ + +T EGH V +
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFVMCV 146
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSC--SWNRDGTKFVCGG 411
A++P G D + VW++ L E + D +
Sbjct: 147 AFNPKDPSTFASGCLD-RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 412 ----IRGQFYQCDI----EGQVLDSWEG--VRVNCLWCRSDGKSVL--AADTHHRI---R 456
I+ I + + EG V+ ++ + D +I
Sbjct: 206 DDLTIK-------IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 457 TYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVST-QGVHLWDLRDRILLRKFQGVTQ 515
TY E L T R + G + L + V +
Sbjct: 259 TYKVEK----TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGK 314
Query: 516 GQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRE-----LPIATLSGHTRTVSCVAWNPV 570
++ + AS + + L L +A +P
Sbjct: 315 LVWSGGK-------NAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN 367
Query: 571 YHQMIASVSDDCTVRIW---------GPHLNTNKSP---HLASS 602
+ + V D V G + P A
Sbjct: 368 G-RFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALI 410
Score = 75.1 bits (185), Expect = 3e-14
Identities = 50/266 (18%), Positives = 91/266 (34%), Gaps = 72/266 (27%)
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLT 396
+KT + V + + P ++ + +WN ET++ + E +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGR-VEIWNYETQVEVRSIQVT--ETPVR 59
Query: 397 SCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTH-HR 454
+ + + G S + +RV + + G+ V+ + H
Sbjct: 60 AGKFIARKNWIIVG-----------------SDDFRIRV---FNYNTGEKVVDFEAHPDY 99
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTI----DATDRLALLNVSTQGVHLWDLRDRILLRK- 509
IR+ HP + + D T V LW+ + L +
Sbjct: 100 IRSIAV------------HPTKPYVLSGSDDLT------------VKLWNWENNWALEQT 135
Query: 510 FQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRELPIATL-SGHTRTV 562
F+G H F + ASG D V +W + + P TL +G R V
Sbjct: 136 FEG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 563 SCVAWNPVYH-QMIASVSDDCTVRIW 587
+ V + P+ + + SDD T++IW
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 50.5 bits (121), Expect = 1e-06
Identities = 39/299 (13%), Positives = 78/299 (26%), Gaps = 76/299 (25%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTV----IIWDVDPVTFTCQHRKTLEGHTLGVAYLAW 355
D V +S A+ + + +P++ K L + LA
Sbjct: 308 SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS---LQTKELGSVDVFPQSLAH 364
Query: 356 SPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
SP+ + VVG DG + +
Sbjct: 365 SPNGRFVTVVG------------------------------------DGEYVIYTALAW- 387
Query: 416 FYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPV 475
+ G+ D G N + + + +++
Sbjct: 388 --RNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVP-------------- 431
Query: 476 MSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQG-VTQGQFTIHSCFGGANQDFVA 533
M ID ALL V + G V+ +D + L+R+ ++ N + V
Sbjct: 432 MHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWS-------DNGELVM 484
Query: 534 SGSEDG-----KVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + Y ++ + + S ++ +S+ T W
Sbjct: 485 IVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAF--DVLYELSESITSGKW 541
Score = 40.1 bits (94), Expect = 0.002
Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 29/114 (25%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ ++ + +V + S +G + + ++ + F
Sbjct: 461 GTLVRRIDVNAKDVIW---SDNGELVMIVNTNSNGDEASGYTLLFNKD------------ 505
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDG 404
AYL + + + G ++ ++ + +S+TS W D
Sbjct: 506 AYLEAANNGNIDDSEGVDEAFDVL--------------YELSESITSGKWVGDV 545
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 118 bits (299), Expect = 2e-29
Identities = 52/325 (16%), Positives = 96/325 (29%), Gaps = 78/325 (24%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ N H + + G +LAT S D T+ I++V+ T TL GH V +
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVD 62
Query: 355 WSPDSS-HLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW--NRDGTKFVCG 410
W+ +L D + +W E ++ ++ S+ S W + G +
Sbjct: 63 WAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121
Query: 411 GIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGK-SVLAADTHHRIRTYNFE-HLTDSNL 468
SDGK SV+ + + H
Sbjct: 122 S-----------------------------SDGKVSVVEFKENGTTSPIIIDAH------ 146
Query: 469 LQEDHPVMS--FTIDATDRLALLNVSTQG-----------VHLWDL----RDRILLRKFQ 511
V S + + N + + V +W + +L +
Sbjct: 147 ---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203
Query: 512 GVTQGQFTIHS-CF---GGANQDFVASGSEDGKVYIWHVKRELP-----IATLSGHTRTV 562
G + + + ++AS S+D IW E + +
Sbjct: 204 GHSD---WVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259
Query: 563 SCVAWNPVYHQMIASVSDDCTVRIW 587
+W+ ++A D V +W
Sbjct: 260 WRASWSLS-GNVLALSGGDNKVTLW 283
Score = 85.1 bits (211), Expect = 6e-18
Identities = 52/327 (15%), Positives = 96/327 (29%), Gaps = 65/327 (19%)
Query: 294 TQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
L H VW ++ G LA+ S D V+IW + H+ V
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQIAVHAVHSASVN 105
Query: 352 YLAWSPDSSHLLVV-GPEDCHELWVWNIET--ELLRVKLN-HSPEDSLTSCSWN------ 401
+ W+P L++ D + V + + ++ H+ + S SW
Sbjct: 106 SVQWAPHEYGPLLLVASSDGK-VSVVEFKENGTTSPIIIDAHA--IGVNSASWAPATIEE 162
Query: 402 -------RDGTKFVCGG----IRGQFYQCDIE-GQVLDSWEGV--RVNCL-WC--RSDGK 444
++ KFV GG ++ Y D + + + EG V + W
Sbjct: 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222
Query: 445 SVLAADTHHRIRTYNFEHLTDSN----LLQEDH--PVMS--FTIDATDRLALLNVSTQG- 495
+ + + ++ L +E + +++ LA + G
Sbjct: 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLA----LSGGD 277
Query: 496 --VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIA 553
V LW +G + +H Q SG + + I
Sbjct: 278 NKVTLWK-------ENLEGKWEPAGEVH-------QGGGGSGGGGATSKEFDGPCQNEID 323
Query: 554 TLSGHTRTVSCVAWNPVYH-QMIASVS 579
L A + + AS +
Sbjct: 324 LLFSECNDEIDNAKLIMKERRFTASYT 350
Score = 75.4 bits (186), Expect = 8e-15
Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 24/142 (16%)
Query: 291 CETTQVLNDHCDEVWFCKFSP-------------DGLKLATGSKDTTVIIWDVDPVTFTC 337
+ +++ H V ++P + K TG D V IW + T
Sbjct: 137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196
Query: 338 QHRKTLEGHTLGVAYLAWSPDS--SHLLVVGPEDCHELWVWNIETE------LLRVKLNH 389
TLEGH+ V +AWSP L +D +W + E L +
Sbjct: 197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQGPWKKTLLKEEKF 255
Query: 390 SPEDSLTSCSWNRDGTKFVCGG 411
D L SW+ G G
Sbjct: 256 P--DVLWRASWSLSGNVLALSG 275
Score = 66.2 bits (162), Expect = 8e-12
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 532 VASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYH------------QMIAS 577
+ S DGKV + K + H V+ +W P + +
Sbjct: 118 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 177
Query: 578 VSDDCTVRIWGPHLNTNK 595
D V+IW + +
Sbjct: 178 GGADNLVKIWKYNSDAQT 195
Score = 54.6 bits (132), Expect = 4e-08
Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 20/115 (17%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
T D +W +S G LA D V +W LEG
Sbjct: 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE-----------NLEGKWEPAGE 296
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTK 406
+ S G ++ + + + + + +
Sbjct: 297 VHQGGGGS-----GGGG-ATSKEFDGPCQNEIDLLFSEC--NDEIDNAKLIMKER 343
Score = 49.6 bits (119), Expect = 2e-06
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + H + + Y + +A+ S D T++I+
Sbjct: 4 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIF 38
Score = 45.0 bits (107), Expect = 5e-05
Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 12/56 (21%)
Query: 532 VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+A D KV +W L G V S T + +
Sbjct: 271 LALSGGDNKVTLWK-------ENLEGKWEPAGEVHQGGG-----GSGGGGATSKEF 314
Score = 29.2 bits (66), Expect = 4.3
Identities = 2/25 (8%), Positives = 3/25 (12%)
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHL 362
H + L
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRL 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 120 bits (303), Expect = 3e-29
Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 60/308 (19%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L H V C + + TG+ D + ++D + L GH GV L
Sbjct: 115 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI----NKKFLLQLSGHDGGVWALK 169
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
++ +LV G D + VW+I+ V H+ ++ V G
Sbjct: 170 YAHGG--ILVSGSTD-RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG--- 223
Query: 414 GQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE- 471
S + + V W SV H + +
Sbjct: 224 --------------SRDNTLHV---WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 472 ---DHPVMSFTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQG----VTQGQFT 519
V + + + + VS T + +WD+ L G + +
Sbjct: 267 RGHMASVRTVSGHG-NIV----VSGSYDNT--LIVWDVAQMKCLYILSGHTDRIYSTIYD 319
Query: 520 IHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
+ S S D + IW ++ + TL GHT V + + + + S +
Sbjct: 320 -------HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAA 369
Query: 580 DDCTVRIW 587
D ++R W
Sbjct: 370 ADGSIRGW 377
Score = 89.2 bits (222), Expect = 4e-19
Identities = 58/343 (16%), Positives = 103/343 (30%), Gaps = 82/343 (23%)
Query: 273 LENVSLLVDHLCTKEEFP-CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+ + L L E F + LN + + D L+L+ + W
Sbjct: 49 IRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNP 108
Query: 332 PVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-H- 389
R TL GH V D+ ++ G +D + V++ + ++L+ H
Sbjct: 109 K---FVPQRTTLRGHMTSVITCLQFEDN--YVITGADD-KMIRVYDSINKKFLLQLSGHD 162
Query: 390 --------SPEDSLTSCSWNRDGTKFVCGGIRGQFYQC--DIE-GQVLDSWEG----VRV 434
+ L S S D T +R DI+ G +EG VR
Sbjct: 163 GGVWALKYAHGGILVSGST--DRT------VR------VWDIKKGCCTHVFEGHNSTVRC 208
Query: 435 NCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQ 494
+ + K ++ + + + + E+H
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----------------- 251
Query: 495 GVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGK----------VYIW 544
V + + +G H V + S G + +W
Sbjct: 252 -VFHTPEENPYFVGVLRG--------HM-------ASVRTVSGHGNIVVSGSYDNTLIVW 295
Query: 545 HVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
V + + LSGHT + ++ + S S D T+RIW
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIW 337
Score = 81.5 bits (202), Expect = 1e-16
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ +L+ H D ++ + + + + S DTT+ IWD++ + TL+GHT V
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALV 355
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
L S LV D + W+ + +H+ + ++ V G
Sbjct: 356 GLLRLSDK---FLVSAAADGS-IRGWDANDYSRKFSYHHT--NLSAITTFYVSDNILVSG 409
Score = 57.3 bits (139), Expect = 8e-09
Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ H + F L +GS + I+++ + + + +
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR--SGKLV-HANILKDADQIWSVN 440
Query: 355 WSPDSSHLLVVG--PEDCHELWVWN 377
+ + LV + L + +
Sbjct: 441 FKGKT---LVAAVEKDGQSFLEILD 462
Score = 55.7 bits (135), Expect = 2e-08
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 20/98 (20%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRE 549
+ +WDL + L+ QG H+ F+ S + DG + W
Sbjct: 334 IRIWDLENGELMYTLQG--------HTALVGLLRLSD---KFLVSAAADGSIRGWDANDY 382
Query: 550 LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
HT + + ++ S S++ I+
Sbjct: 383 SRK-FSYHHTNLSAITTFYV-SDNILVSGSEN-QFNIY 417
Score = 47.2 bits (113), Expect = 1e-05
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 531 FVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ SGS + + I++++ +L A + + V + + + + +
Sbjct: 405 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KTLVAAVEKDGQSFL 458
Score = 36.5 bits (85), Expect = 0.025
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVI-IWDV 330
+ D++W F L A + + I D
Sbjct: 429 ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 117 bits (295), Expect = 4e-29
Identities = 68/340 (20%), Positives = 111/340 (32%), Gaps = 64/340 (18%)
Query: 295 QVLNDHCD-EVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
+ H D WF ++P G LA+ D + IW + ++ C+ EGH V +
Sbjct: 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKV 67
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIET---ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
AWSP ++L D +W E + H E+ + S +W G
Sbjct: 68 AWSPCGNYL-ASASFDAT-TCIWKKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATC 123
Query: 411 G----IR------GQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNF 460
+ Y+C VL+S V + + + +A ++ Y
Sbjct: 124 SRDKSVWVWEVDEEDEYEC---VSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 461 EHLTDSNLLQE-----DHPVMS--F-----TI-----DATDRL---ALLNVSTQGVHLWD 500
E D + + V S F + D T R+ L
Sbjct: 180 E--EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237
Query: 501 LRDRILLRKFQGVTQGQFTIHS-CF---GGANQDFVASGSEDGKVYIWHVK--------- 547
+ G TI+ + G +A+ D + ++
Sbjct: 238 DPSWKCICTLSGFHSR--TIYDIAWCQLTG----ALATACGDDAIRVFQEDPNSDPQQPT 291
Query: 548 RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
L H++ V+CVAWNP ++AS SDD V W
Sbjct: 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 91.9 bits (229), Expect = 2e-20
Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 63/290 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDP-VTFTCQHRKTLEGHTLGV 350
E L H +EV ++P G LAT S+D +V +W+VD + C L HT V
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDV 153
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLN-HSPEDSLTSCSWNRDGTKF 407
++ W P LL D + ++ E + L H ++ S +++ G +
Sbjct: 154 KHVVWHPS-QELLASASYD-DTVKLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRL 209
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDG------KSVLAADTHHRIRTYNF 460
S + VR +W + + + I T +
Sbjct: 210 ASC-----------------SDDRTVR---IWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 461 EHLTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRD-RILLRKFQGVT 514
H + + T LA + + ++ + +T
Sbjct: 250 FH---------SRTIYDIAWCQL-TGALA----TACGDDAIRVFQEDPNSDPQQPTFSLT 295
Query: 515 QGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGH 558
HS + +AS S+DG+V W +R + H
Sbjct: 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHHHH 345
Score = 82.2 bits (204), Expect = 4e-17
Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 30/186 (16%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
++E+ C VLN H +V + P LA+ S D TV ++ + + C TLE
Sbjct: 136 EEDEYEC--VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--TLE 191
Query: 345 GHTLGVAYLAWSPDSSHL-------------LVVGPEDCHELWVWNIETELLRVKLNHSP 391
GH V LA+ P L + + + + L+
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 392 EDSLTSCSWNRDGTKFVCGG----IR------GQFYQCDIEGQVLDSWEG--VRVNCL-W 438
++ +W + IR Q + VNC+ W
Sbjct: 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311
Query: 439 CRSDGK 444
+
Sbjct: 312 NPKEPG 317
Score = 79.9 bits (198), Expect = 2e-16
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+ + H V +SP G LA+ S D T IW + + TLEGH V
Sbjct: 53 KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN--QDDFECVTTLEGHENEVKS 110
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSPEDSLTSCSWNRDGT 405
+AW+P + L D +WVW ++ E + V +H+ + W+
Sbjct: 111 VAWAPSGNL-LATCSRD-KSVWVWEVDEEDEYECVSVLNSHT--QDVKHVVWHPSQE 163
Score = 64.9 bits (159), Expect = 2e-11
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 531 FVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWG 588
++AS S D IW + TL GH V VAW P ++A+ S D +V +W
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVW- 132
Query: 589 PHLNTNKSPHLASSLT 604
++ S L
Sbjct: 133 -EVDEEDEYECVSVLN 147
Score = 53.7 bits (130), Expect = 6e-08
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 284 CTKEEFPCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKT 342
++ T + H +V ++P + LA+ S D V W +
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ----RPEGLHH 341
Query: 343 LEGH 346
H
Sbjct: 342 HHHH 345
Score = 46.0 bits (110), Expect = 2e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 551 PIATLSGHTR-TVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + H +AWNP ++AS D +RIW
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIW 43
Score = 39.1 bits (92), Expect = 0.003
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 336 TCQHRKTLEGHTLGVAY-LAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSPE 392
+ + H + LAW+P LL D + +W E + + L+ +
Sbjct: 4 SLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQ 61
Query: 393 DSLTSCSWNRDGTKFVCGG 411
++ +W+ G
Sbjct: 62 RTVRKVAWSPCGNYLASAS 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 120 bits (304), Expect = 5e-29
Identities = 44/305 (14%), Positives = 103/305 (33%), Gaps = 66/305 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDG-LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ ++ H + C ++ T D +V+ + P F+ R T V
Sbjct: 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFV 209
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW---NRDGTK 406
+ +SPDS ++ D + ++ ++ E L+ + + + + D K
Sbjct: 210 RDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWLDSQK 266
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
F + +R +W + K ++ + +
Sbjct: 267 FATV-----------------GADATIR---VWDVTTSKC---------VQKWTLD---- 293
Query: 466 SNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
++ + AT ++++S G ++ ++L +L+ G +G I +
Sbjct: 294 ----KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG---ITAL- 345
Query: 525 GGANQDF--VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDC 582
+ SGS DG++ W H+ + + + Q +S+S D
Sbjct: 346 -----TVNPLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSK--AQEYSSISWDD 393
Query: 583 TVRIW 587
T+++
Sbjct: 394 TLKVN 398
Score = 114 bits (287), Expect = 9e-27
Identities = 41/309 (13%), Positives = 82/309 (26%), Gaps = 68/309 (22%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLAT--GSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ + +G +L +D + D + + GH+ +
Sbjct: 108 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD----SGNSLGEVSGHSQRI 163
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSPEDSLTSCSWNRD-GT 405
+ +D + + R + ++ D G
Sbjct: 164 NACHLKQSRPMRSMTVGDDGS-VVFYQGPPFKFSASDRTHHKQG--SFVRDVEFSPDSGE 220
Query: 406 KFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
+ G SD K I ++
Sbjct: 221 FVITVG-----------------------------SDRK----------ISCFD---GKS 238
Query: 466 SNLLQ--EDH--PVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQF 518
L+ ED PV F + D V + +WD+ ++K+ Q
Sbjct: 239 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 298
Query: 519 TIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASV 578
+ S S DG + + + + + T+SGH + ++ + NP + S
Sbjct: 299 NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISG 353
Query: 579 SDDCTVRIW 587
S D + W
Sbjct: 354 SYDGRIMEW 362
Score = 113 bits (286), Expect = 9e-27
Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 63/312 (20%)
Query: 295 QVLNDHC-DEVWFCKFSP--DGLKLATGSKDTTVIIWDVD----PVTFTCQHRKTLEGHT 347
H V KFSP L +G + VI+W + + +
Sbjct: 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 116
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTK 406
++ ++W + L VVG + + ++ L HS + +C +
Sbjct: 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS--QRINACHLKQSRPM 174
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
+G V + K + THH +
Sbjct: 175 RSMTV----------------GDDGSVV---FYQGPPFKFSASDRTHH-------KQ--- 205
Query: 466 SNLLQEDHPVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHS 522
V F+ D+ + + V + + +D + L+ + Q +
Sbjct: 206 ------GSFVRDVEFSPDSGEFVI--TVGSDRKISCFDGKSGEFLKYIED---DQEPVQG 254
Query: 523 -CFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVS----CVAWNPVYHQMI 575
F + D A+ D + +W V + + + + V + I
Sbjct: 255 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRI 312
Query: 576 ASVSDDCTVRIW 587
S+S D T+ +
Sbjct: 313 ISLSLDGTLNFY 324
Score = 107 bits (269), Expect = 1e-24
Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%)
Query: 292 ETTQVLNDHCDEVWFCKFSP---DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
E + + D + V F+ D K AT D T+ +WDV T C + TL+ L
Sbjct: 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT--TSKCVQKWTLDKQQL 297
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKF 407
G + + ++ D L + + E+L+ H+ +T+ + N
Sbjct: 298 GNQQVGVVATGNGRIISLSLD-GTLNFYELGHDEVLKTISGHN--KGITALTVNP----L 350
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
+ G G+ + + + L S + + ++ +
Sbjct: 351 ISGSYDGRIMEWSSSSM----HQDHSNLIVSL-DNSKAQEYSSISWDDTLK------VNG 399
Query: 466 SNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFG 525
+ + D + + + + +++ + + G + S
Sbjct: 400 ITKHEFGSQPKVASA-NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQ 456
Query: 526 GANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ G+ + ++ + T S ++ +P IA+ +
Sbjct: 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISPS-ETYIAAGDVMGKIL 513
Query: 586 IW 587
++
Sbjct: 514 LY 515
Score = 107 bits (269), Expect = 1e-24
Identities = 40/310 (12%), Positives = 86/310 (27%), Gaps = 85/310 (27%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
E + ++ H + +P L +GS D ++ W + H+ +
Sbjct: 330 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS---------SMHQDHSNLIV 376
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
L S D L V I H S N DG V
Sbjct: 377 SLDNSKAQ--EYSSISWDDT-LKVNGITK--------HEFGSQPKVASANNDGFTAVLT- 424
Query: 412 IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
+ + + + G + + + +
Sbjct: 425 ----------------NDDDLL---ILQSFTGDIIKSVRLNSPGSAVSL----------- 454
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CF---GGA 527
S A L + ++ L D + + +
Sbjct: 455 -----SQNYVAV-GLE----EGNTIQVFKLSDLEVSFDLKTPLRA--KPSYISISPSE-- 500
Query: 528 NQDFVASGSEDGKVYIWHVK-RELPIATLSGHTRTVSCVAWNP---------VYHQMIAS 577
++A+G GK+ ++ ++ RE+ + + T ++ ++W P + ++A+
Sbjct: 501 --TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558
Query: 578 VSDDCTVRIW 587
S D + I+
Sbjct: 559 GSLDTNIFIY 568
Score = 106 bits (267), Expect = 2e-24
Identities = 37/305 (12%), Positives = 83/305 (27%), Gaps = 59/305 (19%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY-LAWSPD 358
+ + P +A + + +D GH V + +SP
Sbjct: 17 QRNFTTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 359 SS-HLLVVGPEDCHELWVWNIETELLRVKLNHSP-------EDSLTSCSWNRDGTKFVCG 410
L G E ++ VW + + + ++ SW+ +G +
Sbjct: 76 KGSQYLCSGDES-GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 411 GIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLL 469
G + + + D+ + + + H
Sbjct: 135 G---------------EGRDNFGV---FI---------SWDSGNSLGEVS-GH------- 159
Query: 470 QEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHS-CF--- 524
+ + + + + + V G V + + + + F
Sbjct: 160 --SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH--QMIASVSDDC 582
G +FV + D K+ + K + + V + + Q A+V D
Sbjct: 218 SG---EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 583 TVRIW 587
T+R+W
Sbjct: 275 TIRVW 279
Score = 100 bits (250), Expect = 3e-22
Identities = 45/303 (14%), Positives = 89/303 (29%), Gaps = 72/303 (23%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
DH + + S + ++ S D T+ + + + +A +
Sbjct: 368 HQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGIT------------KHEFGSQPKVASA 414
Query: 357 PDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
+ V+ +D +L + T + + + S S S N G
Sbjct: 415 NNDGFTAVLTNDD--DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN----- 467
Query: 417 YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVM 476
++V L + T R
Sbjct: 468 --------------TIQVFKLSDLEVSFDLK---TPLR------------------AKPS 492
Query: 477 S--FTIDATDRLALLNVSTQG-VHLWDLRDR-ILLRKFQG----VTQGQFT---IHSCFG 525
+ T +A G + L+DL+ R + ++ + + +
Sbjct: 493 YISISPSET-YIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549
Query: 526 GANQDFVASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
+D VA+GS D ++I+ VKR I L+ H V+ + W + S D +
Sbjct: 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACI 607
Query: 585 RIW 587
+ W
Sbjct: 608 KRW 610
Score = 97.3 bits (243), Expect = 2e-21
Identities = 40/311 (12%), Positives = 90/311 (28%), Gaps = 45/311 (14%)
Query: 295 QVLNDHCDEVWFCKFSPD-GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
+ + V +FSPD G + T D + +D + + K +E V
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGG 255
Query: 354 AWSPDS--SHLLVVGPEDCHELWVWNIETELLRVKLN---HSPEDSLTSCSWNRDGTKFV 408
++ S D + VW++ T K + +G +
Sbjct: 256 IFALSWLDSQKFATVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-II 313
Query: 409 CGGIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLA-ADTHHRIRTYNFEHLT 464
+ G ++ +VL + G + L + L RI ++ +
Sbjct: 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITAL-----TVNPLISGSYDGRIMEWS----S 364
Query: 465 DSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQF--TIH 521
S + ++S + +S + + +T+ +F
Sbjct: 365 SSMHQDHSNLIVSLDNSKAQEYSS--ISWDDTLKVNG------------ITKHEFGSQPK 410
Query: 522 SCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGH-TRTVSCVAWNPVYHQMIASVSD 580
N F A + D + I I ++ + + ++ N V + +
Sbjct: 411 VASA-NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV-AVGLEEGNT 468
Query: 581 DCTVRIWGPHL 591
++ +
Sbjct: 469 IQVFKLSDLEV 479
Score = 80.4 bits (199), Expect = 5e-16
Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
+ + + SP +A G ++++D+ + + + T + +
Sbjct: 481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ--SREVKTSR-WAFRTSKINAI 537
Query: 354 AWSPDSSH---------LLVVGPEDCHELWVWNIET--ELLRVKLNHSPEDSLTSCSWNR 402
+W P L+ G D + +++++++ ++++ H D + + W
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNAHK--DGVNNLLWET 594
Query: 403 DGTKFVCG 410
T G
Sbjct: 595 PSTLVSSG 602
Score = 79.2 bits (196), Expect = 1e-15
Identities = 29/257 (11%), Positives = 64/257 (24%), Gaps = 52/257 (20%)
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET---ELLRVKLNHSPEDSLTSC--- 398
+L++ P ++ + + + + H S+ +
Sbjct: 16 TQRNFTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPPVVQFTGH--GSSVVTTVKF 72
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRT 457
S + G G V +W +
Sbjct: 73 SPIKGSQYLCSG-----------------DESGKVI---VW-----------GWTFDKES 101
Query: 458 YNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVT 514
+ E S P+ + + RL ++ L + G +
Sbjct: 102 NSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 160
Query: 515 QGQFTIHSC-FGGANQDFVASGSEDGKVYIWHV---KRELPIATLSGHTRTVSCVAWNPV 570
Q I++C + + +DG V + K T V V ++P
Sbjct: 161 Q---RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217
Query: 571 YHQMIASVSDDCTVRIW 587
+ + +V D + +
Sbjct: 218 SGEFVITVGSDRKISCF 234
Score = 44.9 bits (107), Expect = 6e-05
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+ LN H D V + L + D + W+V
Sbjct: 578 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613
Score = 29.5 bits (67), Expect = 4.1
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 556 SGHTRTVSCVAWNPVYHQMIASVSDDC-TVRIW 587
S + ++++P IA VR
Sbjct: 15 STQRNFTTHLSYDPT-TNAIAYPCGKSAFVRCL 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 116 bits (293), Expect = 7e-29
Identities = 62/331 (18%), Positives = 97/331 (29%), Gaps = 82/331 (24%)
Query: 288 EFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD---PVTFTCQHRKTLE 344
+F H + + P LA GS D+TV IW + TF +E
Sbjct: 45 DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE 104
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-----ELLRVKLNHSPEDSLTSCS 399
GH V +AWS D + L D +W+W + E + V HS +
Sbjct: 105 GHENEVKGVAWSNDGYY-LATCSRD-KSVWIWETDESGEEYECISVLQEHS--QDVKHVI 160
Query: 400 WNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTY 458
W+ S++ VR +W D +
Sbjct: 161 WHPSEALLASS-----------------SYDDTVR---IWKDYDDDWEC-------VAVL 193
Query: 459 NFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQGV 513
N H + V S D T+ + L S T V +W + + V
Sbjct: 194 N-GH---------EGTVWSSDFDKTEGVFRL-CSGSDDST--VRVWKYMGDDEDDQQEWV 240
Query: 514 TQGQ-FTIHSCFGGANQDFV-----------ASGSEDGKVYIWHVK----RELPIATLSG 557
+ +H V AS DG + ++ + L
Sbjct: 241 CEAILPDVHK-------RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH 293
Query: 558 HTRTVSCVAW-NPVYHQMIASVSDDCTVRIW 587
++ V W ++A+ DD V W
Sbjct: 294 GVYEINVVKWLELNGKTILATGGDDGIVNFW 324
Score = 84.6 bits (210), Expect = 5e-18
Identities = 48/275 (17%), Positives = 88/275 (32%), Gaps = 50/275 (18%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
F + ++ H +EV +S DG LAT S+D +V IW+ D + L+
Sbjct: 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRV--KLN-HSPEDSLTSCSWN 401
H+ V ++ W P LL D + +W + LN H ++ S ++
Sbjct: 151 EHSQDVKHVIWHPS-EALLASSSYD-DTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFD 206
Query: 402 RDGTKF--VCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTY 458
+ F G S + VR +W
Sbjct: 207 KTEGVFRLCSG-----------------SDDSTVR---VWKYMGDDE-DDQQEWVCEAIL 245
Query: 459 NFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVST---QGVHLWDLRD-RILLRKFQGVT 514
H V + +A S + +++ D + + +
Sbjct: 246 PDVH---------KRQVYNVAWGFNGLIA----SVGADGVLAVYEEVDGEWKVFAKRALC 292
Query: 515 QGQFTIHS--CFGGANQDFVASGSEDGKVYIWHVK 547
G + I+ + +A+G +DG V W ++
Sbjct: 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 79.6 bits (197), Expect = 2e-16
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L + +++W FS LATGS D + + V FT H + +A
Sbjct: 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIET--------ELLRVKLNHSPEDSLTSCSWNRDGT 405
W P +S L G D + +W E +LL + H E+ + +W+ DG
Sbjct: 66 WRPHTSL-LAAGSFD-STVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGVAWSNDGY 120
Score = 71.1 bits (175), Expect = 1e-13
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 530 DFVASGSEDGKVYIWHVKRE----LPIATLSGHTRTVSCVAWNPVYH-QMIASVSDDCTV 584
+A+GS D K+ + VK + + + + H + + VAW P H ++A+ S D TV
Sbjct: 25 GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFDSTV 82
Query: 585 RIW 587
IW
Sbjct: 83 SIW 85
Score = 68.8 bits (169), Expect = 8e-13
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW- 355
+ H +V+ + +GL +A+ D + +++ + ++ L + + W
Sbjct: 246 PDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304
Query: 356 SPDSSHLLVVGPEDCHELWVWNIET 380
+ +L G +D + W++E
Sbjct: 305 ELNGKTILATGGDDGI-VNFWSLEK 328
Score = 62.2 bits (152), Expect = 1e-10
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 23/107 (21%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQD--FVASGSEDGKVYIWHVK 547
+ L ++ F + T H + +A+GS D V IW +
Sbjct: 36 IKLVSVKYD----DFTLIDVLDETAHKKAIRSVAW---RPHTSLLAAGSFDSTVSIWAKE 88
Query: 548 -------RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+A + GH V VAW+ +A+ S D +V IW
Sbjct: 89 ESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIW 134
Score = 52.6 bits (127), Expect = 1e-07
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
I +L + + ++ ++A+ S D +++
Sbjct: 7 IKSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLV 39
Score = 40.6 bits (96), Expect = 0.001
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 336 TCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPE--- 392
+ K+L+ + + +S +L G D ++ + +++ + +
Sbjct: 3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHK 58
Query: 393 DSLTSCSWNRDGTKFVCGG 411
++ S +W + G
Sbjct: 59 KAIRSVAWRPHTSLLAAGS 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 116 bits (292), Expect = 7e-29
Identities = 55/335 (16%), Positives = 98/335 (29%), Gaps = 96/335 (28%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
L H +V D K+A+ S+D TV +W D + + +
Sbjct: 12 ATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSKD----DQWLGTVVYTGQGFLNSVC 66
Query: 355 WSPDSSHLLVVGPEDC--HELWVWNIET-ELLRVKLNH---------SPEDSLTSCSWNR 402
+ + LL+ G +D + + ++ + L + H + S SW
Sbjct: 67 YDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD-GVVISGSW-- 122
Query: 403 DGTKFVCGGIRGQFYQCDI--EGQVLDSWEG--VRVNCLWCRS-DGKSVLAA-------- 449
D T + + EG ++ + + V S L A
Sbjct: 123 DKT------AK-------VWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169
Query: 450 -DTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVS-----TQGVHLWDLRD 503
I+T++ H + V + +S + L D+
Sbjct: 170 WQNDKVIKTFSGIH---------NDVVRHLAVVDDGHF----ISCSNDGL--IKLVDMHT 214
Query: 504 RILLRKFQGVTQGQFTIHSCFGGANQDFV-----------ASGSEDGKVYIWHVKRELPI 552
+LR ++G H FV S ED V IW +
Sbjct: 215 GDVLRTYEG--------HE-------SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLK 259
Query: 553 ATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
++ ++ V + I S D VRI+
Sbjct: 260 QVITLPAISIWSVDCMS--NGDIIVGSSDNLVRIF 292
Score = 68.7 bits (169), Expect = 8e-13
Identities = 49/267 (18%), Positives = 83/267 (31%), Gaps = 41/267 (15%)
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLT 396
Q TL+GH V + DS + D + +W+ + + L + L
Sbjct: 9 QLSATLKGHDQDVRDVVAVDDS--KVASVSRD-GTVRLWSKDDQWLGTVVYTGQ--GFLN 63
Query: 397 SCSWNRDGTKFVCGG----IRGQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAA- 449
S ++ + + GG I G L + G V L DG + +
Sbjct: 64 SVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSL-SFQDGVVISGSW 122
Query: 450 -------DTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVST-QGVHLWDL 501
+ L + V + + L S + + LW
Sbjct: 123 DKTAKVWKEGSLVYN----------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 502 RDRILLRKFQGVTQGQFTIHS-CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTR 560
+++ F G+ + S S DG + + + + T GH
Sbjct: 173 DK--VIKTFSGIHND--VVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHES 226
Query: 561 TVSCVAWNPVYHQMIASVSDDCTVRIW 587
V C+ P + I S +D TVRIW
Sbjct: 227 FVYCIKLLP--NGDIVSCGEDRTVRIW 251
Score = 68.3 bits (168), Expect = 1e-12
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ H V+ K P+G + + +D TV IW + ++ + + + +
Sbjct: 219 RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE----NGSLKQVITLPAISIWSVD 273
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETE 381
+ ++VG D + + +++ E
Sbjct: 274 CMSNGD--IIVGSSD-NLVRIFSQEKS 297
Score = 63.7 bits (156), Expect = 4e-11
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 292 ETTQVLNDHCDEVWFCK-FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEG-HTLG 349
L H VW K S K T S D T+ +W + KT G H
Sbjct: 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ------NDKVIKTFSGIHNDV 186
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
V +LA D + D + + ++ T ++LR H + +G V
Sbjct: 187 VRHLAVVDDGH--FISCSND-GLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIV 240
Query: 409 CGG 411
G
Sbjct: 241 SCG 243
Score = 61.0 bits (149), Expect = 3e-10
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
QV+ +W +G + GS D V I+ + ++G
Sbjct: 260 QVITLPAISIWSVDCMSNG-DIIVGSSDNLVRIFSQE--KSRWASEDEIKGELRSG 312
Score = 59.1 bits (144), Expect = 1e-09
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRE 549
V L+ L G H F V SGS D +W
Sbjct: 86 VPLFATSGEDPLYTLIG--------HQGNVCSLSFQD---GVVISGSWDKTAKVWKEGSL 134
Query: 550 LPIATLSGHTRTV---SCVAWNPVYHQMIASVSDDCTVRIW--GPHLNTNKSPH 598
+ L H +V V+++ + S D T+++W + T H
Sbjct: 135 V--YNLQAHNASVWDAKVVSFSE---NKFLTASADKTIKLWQNDKVIKTFSGIH 183
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 114 bits (287), Expect = 2e-28
Identities = 48/328 (14%), Positives = 94/328 (28%), Gaps = 84/328 (25%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ N H + + G ++AT S D T+ I++V+ T TL GH V +
Sbjct: 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVD 60
Query: 355 WSPDS-SHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW--NRDGTKFVCG 410
W+ +L D + +W E ++ ++ S+ S W + G +
Sbjct: 61 WAHPKFGTILASCSYDGK-VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA 119
Query: 411 GIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
SDGK + F+ +
Sbjct: 120 S-----------------------------SDGK----------VSVVEFK--ENGTTSP 138
Query: 471 E-----DHPVMS--FTIDATDRLALLNVSTQG-----------VHLWDL----RDRILLR 508
V S + + N + + V +W + +L
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 509 KFQGVTQGQFTIHS-CF---GGANQDFVASGSEDGKVYIWHV-----KRELPIATLSGHT 559
+G + + + ++AS S+D IW + +
Sbjct: 199 TLEGHSD---WVRDVAWSPTVLLRS-YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 560 RTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ +W+ ++A D V +W
Sbjct: 255 DVLWRASWSLS-GNVLALSGGDNKVTLW 281
Score = 74.2 bits (183), Expect = 9e-15
Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 24/142 (16%)
Query: 291 CETTQVLNDHCDEVWFCKFSP-------------DGLKLATGSKDTTVIIWDVDPVTFTC 337
+ +++ H V ++P + K TG D V IW + T
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 338 QHRKTLEGHTLGVAYLAWSPD--SSHLLVVGPEDCHELWVWNIETE------LLRVKLNH 389
TLEGH+ V +AWSP + +D +W + E L +
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQGPWKKTLLKEEKF 253
Query: 390 SPEDSLTSCSWNRDGTKFVCGG 411
D L SW+ G G
Sbjct: 254 P--DVLWRASWSLSGNVLALSG 273
Score = 70.0 bits (172), Expect = 3e-13
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 291 CETTQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
V H V +++P G L S D V + + ++ H +
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK--ENGTTSPIIIDAHAI 146
Query: 349 GVAYLAWSPDSSH 361
GV +W+P +
Sbjct: 147 GVNSASWAPATIE 159
Score = 67.3 bits (165), Expect = 2e-12
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 532 VASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYH------------QMIAS 577
+ S DGKV + K + H V+ +W P + +
Sbjct: 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 578 VSDDCTVRIWGPHLNTNK 595
D V+IW + +
Sbjct: 176 GGADNLVKIWKYNSDAQT 193
Score = 53.0 bits (128), Expect = 9e-08
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGH 346
T D +W +S G LA D V +W + E H
Sbjct: 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK---ENLEGKWEPAGEVH 296
Score = 50.3 bits (121), Expect = 8e-07
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + H + + Y + +A+ S D T++I+
Sbjct: 2 VVIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIF 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 116 bits (293), Expect = 4e-28
Identities = 45/332 (13%), Positives = 94/332 (28%), Gaps = 74/332 (22%)
Query: 295 QVLNDHCDEVWFCKFSPDGLK-LATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
Q + P +A GSK +++W+ G + L
Sbjct: 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG--IKDKPTFIKGIGAGGSITGL 170
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGTKFVCGGI 412
++P +++ + + + + +LRV + + S + V G
Sbjct: 171 KFNPLNTNQFYASSMEGT-TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN 229
Query: 413 RGQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
G +++G+ L + +V + LA T S
Sbjct: 230 VGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLA---------------TASV--- 271
Query: 471 EDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQ 529
D T V +WDLR F + +++ CF +
Sbjct: 272 ----------DQT------------VKIWDLRQVRGKASFLYSLPHRHPVNAACF---SP 306
Query: 530 D--FVASGSEDGKVYIWHVKRELPIATLSGHTR------TVSCVAWNPVYH--------- 572
D + + + ++ ++ + L H T AW+P Y+
Sbjct: 307 DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Query: 573 --QMIASVSDDCTVRIW----GPHLNTNKSPH 598
+ + T+ ++ G + P
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE 398
Score = 103 bits (258), Expect = 9e-24
Identities = 42/321 (13%), Positives = 90/321 (28%), Gaps = 72/321 (22%)
Query: 291 CETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLG 349
T + KF+P + + S + T + D + + + +
Sbjct: 154 KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK--GNILRVFASSDTINIW 211
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVC 409
L S S +V G + + + N++ + L H +T + N F+
Sbjct: 212 FCSLDVSASSRM-VVTGDNVGN-VILLNMDGKELWNLRMHK--KKVTHVALNPCCDWFLA 267
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNL 468
S + V+ +W + Y+ H
Sbjct: 268 TA----------------SVDQTVK---IWDLRQVRGK-------ASFLYSLPH------ 295
Query: 469 LQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQGVTQGQFTIHSC 523
HPV + F+ D RL +T + ++ F +
Sbjct: 296 ---RHPVNAACFSPDGA-RLL----TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347
Query: 524 FGGA--------------NQDFVASGSEDGK-VYIWHVKRELPIATL-SGHTRTVSCV-A 566
A + +F + + + + ++ + L + +S +
Sbjct: 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407
Query: 567 WNPVYHQMIASVSDDCTVRIW 587
+NP+ +AS + IW
Sbjct: 408 FNPM-GDTLASAMGY-HILIW 426
Score = 99.0 bits (247), Expect = 3e-22
Identities = 40/308 (12%), Positives = 84/308 (27%), Gaps = 92/308 (29%)
Query: 309 FSPDGLKLATGSKDTTV------IIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHL 362
+ KL S + + +D + + + LAW P
Sbjct: 79 RTLHQHKLGRASWPSVQQGLQQSFLHTLD----SYRILQKAAPFDRRATSLAWHPTHPST 134
Query: 363 LVVGPEDCHELWVWNIET---ELLRVKLNH---------SPEDS--LTSCSWNRDGTKFV 408
+ VG + ++ +WN + +P ++ + S +GT
Sbjct: 135 VAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM--EGT--- 188
Query: 409 CGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRS-----DGKSVLAADTHHRIRTYNFEHL 463
R Q D +G +L + +W S + V+ D
Sbjct: 189 ---TRLQ----DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN------------ 229
Query: 464 TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS- 522
V L ++ + L + + +
Sbjct: 230 -----------------VGN------------VILLNMDGK-ELWNLRMHKKK---VTHV 256
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELPIATL---SGHTRTVSCVAWNPVYHQMIASVS 579
F+A+ S D V IW +++ A+ H V+ ++P + +
Sbjct: 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD-GARLLTTD 315
Query: 580 DDCTVRIW 587
+R++
Sbjct: 316 QKSEIRVY 323
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 115 bits (290), Expect = 5e-28
Identities = 56/308 (18%), Positives = 103/308 (33%), Gaps = 53/308 (17%)
Query: 292 ETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVD---PVTFTCQHRKTLEGHT 347
+ ++ H V + P + +A+GS+D TV++W++ V + TLEGHT
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTK 406
V +AW P + ++L+ D + + VW++ T + D++ S W+RDG
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCD-NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
+ VR + G V D H
Sbjct: 191 ICTS-----------------CRDKRVR---VIEPRKGTVVAEKDRPH------------ 218
Query: 466 SNLLQEDHPVMSFTIDATDRLA---LLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS 522
E + + ++ +S + V LWD + Q + +
Sbjct: 219 -----EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273
Query: 523 CFGGANQDFVASGSEDGKVYIWHVKRELP-IATLSGHTRTVSC--VAWNPVYHQMIASVS 579
F G D + + + E P + LS + S + + P + V+
Sbjct: 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP---KRGLEVN 330
Query: 580 DDCTVRIW 587
R +
Sbjct: 331 KCEIARFY 338
Score = 67.4 bits (165), Expect = 4e-12
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
T + H D ++ +S DG + T +D V + + + G
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGT 221
Query: 351 --AYLAWSPDSSHLLVVGPEDC--HELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGT 405
+ + + +L G ++ +W+ + E + ++ D
Sbjct: 222 RPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN 280
Query: 406 KFVCGG 411
G
Sbjct: 281 IVYLCG 286
Score = 65.5 bits (160), Expect = 2e-11
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRE 549
V +W++ D L+ + H+ + Q+ + S D + +W V
Sbjct: 106 VMVWEIPDGGLVLPLREPVI-TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Query: 550 LPIATLS--GHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPH 590
+ TL H T+ V W+ +I + D VR+ P
Sbjct: 165 AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPR 206
Score = 65.1 bits (159), Expect = 2e-11
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 510 FQGVTQGQFTIHSCFGGANQDFVA-----SGSEDGKVYIWHVKRELP--IATLSGHTRTV 562
++ V Q T S F N F+A SG V + + + GHT V
Sbjct: 25 YEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPV 84
Query: 563 SCVAWNPVYHQMIASVSDDCTVRIW 587
+AW P +IAS S+DCTV +W
Sbjct: 85 LDIAWCPHNDNVIASGSEDCTVMVW 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 115 bits (291), Expect = 6e-28
Identities = 79/319 (24%), Positives = 126/319 (39%), Gaps = 61/319 (19%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
++ +VL H D V C G ++ +GS D T+ +W T + +TL GHT GV
Sbjct: 108 LKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV----TGKCLRTLVGHTGGV 162
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNH---------SPEDSLTSCSW 400
+ +++ G D L VWN ET E + H + S S
Sbjct: 163 WSSQMRDN---IIISGSTD-RTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGS- 216
Query: 401 NRDGTKFVCGGIRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRT 457
RD T +R DIE GQ L G V C+ DG+ V++ ++
Sbjct: 217 -RDAT------LR----VWDIETGQCLHVLMGHVAAVRCVQ--YDGRRVVSGAYDFMVKV 263
Query: 458 YNFEHLTDSNLLQE-DHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQG--- 512
++ E T + LQ + V S D + + S + +WD+ + G
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFDGI-HVV--SGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 513 -VTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSG---HTRTVSCVAWN 568
+ + + + SG+ D V IW +K + TL G H V+C+ +N
Sbjct: 321 LTSGMEL---------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 371
Query: 569 PVYHQMIASVSDDCTVRIW 587
+ + SDD TV++W
Sbjct: 372 K---NFVITSSDDGTVKLW 387
Score = 98.5 bits (246), Expect = 4e-22
Identities = 64/311 (20%), Positives = 105/311 (33%), Gaps = 81/311 (26%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
L H V ++ +GS+D T+ +WD++ T Q L GH V +
Sbjct: 192 IHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIE----TGQCLHVLMGHVAAVRCV 245
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
+ +V G D + VW+ ET L H+ + + S + DG V G
Sbjct: 246 QYDGR---RVVSGAYD-FMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSG-- 295
Query: 413 RGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
S + +R +W D +T + I T H
Sbjct: 296 ---------------SLDTSIR---VW---D------VETGNCIHTL-TGH--------- 318
Query: 472 DHPVMSFTIDATDRLALLNVS-----TQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CFG 525
+ + L VS T V +WD++ L+ QG + Q + F
Sbjct: 319 QSLTSGMELKD-NIL----VSGNADST--VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 371
Query: 526 GANQDFVASGSEDGKVYIWHVK-----RELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
+FV + S+DG V +W +K R L G V + + + A S
Sbjct: 372 K---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT-KLVCAVGSR 427
Query: 581 DCT----VRIW 587
+ T + +
Sbjct: 428 NGTEETKLLVL 438
Score = 75.0 bits (185), Expect = 2e-14
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATL 555
W + + +G + +C + + SGS+D + +W + TL
Sbjct: 100 DTNWRRGELKSPKVLKGHDDH---VITCLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155
Query: 556 SGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
GHT V +I S S D T+++W
Sbjct: 156 VGHTGGVWSSQMRD---NIIISGSTDRTLKVW 184
Score = 56.9 bits (138), Expect = 9e-09
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 298 NDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH---RKTLEGHTLGVAYLA 354
N H V +F+ + + T S D TV +WD+ T G V +
Sbjct: 359 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK--TGEFIRNLVTLESGGSGGVVWRIR 414
Query: 355 WSPDSSHLLVVGPED---CHELWVWNIETEL 382
S VG + +L V + + ++
Sbjct: 415 ASNTKLV-CAVGSRNGTEETKLLVLDFDVDM 444
Score = 55.0 bits (133), Expect = 3e-08
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 281 DHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHR 340
+ L ++ + L+ +V F K A + W +
Sbjct: 56 NLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRG----ELKSP 111
Query: 341 KTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRV 385
K L+GH V + +V G +D + L VW+ T + LR
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNR-IVSGSDD-NTLKVWSAVTGKCLRT 154
Score = 46.5 bits (111), Expect = 2e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTT----VIIWDVDP 332
T VW + S L A GS++ T +++ D D
Sbjct: 399 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442
Score = 45.4 bits (108), Expect = 4e-05
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 16/122 (13%)
Query: 475 VMSFTIDATDRLALLNVST--------QGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGG 526
V+SF ++ D L + ++ + +
Sbjct: 30 VLSF-LEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP 88
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTV-SCVAWNPVYHQMIASVSDDCTVR 585
A + W L GH V +C+ + I S SDD T++
Sbjct: 89 WK---SAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLK 142
Query: 586 IW 587
+W
Sbjct: 143 VW 144
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 111 bits (279), Expect = 6e-27
Identities = 41/324 (12%), Positives = 90/324 (27%), Gaps = 62/324 (19%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ H D V + G +AT S D + ++ +D T + + H + +
Sbjct: 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAID 64
Query: 355 WSPDS-SHLLVVGPEDCHELWVWNIETELLRVKLNHSP--------EDSLTSCSWNRD-- 403
W+ ++ D + +W + + + SL S +
Sbjct: 65 WASPEYGRIIASASYD-KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 404 GTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
G K C +G +R L+ + + + ++
Sbjct: 124 GLKLACL-----------------GNDGILR---LYDALEPSDLRSWTLTSEMK------ 157
Query: 463 LTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDR--ILLRKFQGVTQ 515
+ + L + Q + +D + K G
Sbjct: 158 VLSIPPANHLQSDFCLSWCPSRFSPEKL--AVSALEQAIIYQRGKDGKLHVAAKLPGHKS 215
Query: 516 GQFTIHS-CF---GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP-V 570
I S + G +A+G +DG++ I+ + +L + L+ + ++
Sbjct: 216 L---IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL--SPLASEESLTNSNMFDNSA 270
Query: 571 YHQMIASVSDDC----TVRIWGPH 590
M A D +
Sbjct: 271 DVDMDAQGRSDSNTEEKAELQSNL 294
Score = 96.6 bits (241), Expect = 6e-22
Identities = 51/342 (14%), Positives = 100/342 (29%), Gaps = 70/342 (20%)
Query: 292 ETTQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHR-----KTLE 344
E + H + ++ G +A+ S D TV +W+ DP C R TL
Sbjct: 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107
Query: 345 GHTLGVAYLAWSPDSS-HLLVVGPEDC----------HELWVWNIETELLRVKLNHSP-E 392
+ + ++P L D +L W + +E+ + + +
Sbjct: 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167
Query: 393 DSLTSCSWNRD---GTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAA 449
S SW K + + + DGK +AA
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSA-------LE---------QAII---YQRGKDGKLHVAA 208
Query: 450 --DTH-HRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRIL 506
H IR+ ++ ++ + + + D + ++ + ++
Sbjct: 209 KLPGHKSLIRSISWAP----SIGRWYQLIATGCKDGR------------IRIFKITEK-- 250
Query: 507 LRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGK----VYIWHVKRELPIATLSGHTRTV 562
L + A G D + + ++ H V
Sbjct: 251 LSPLASEESLTNSNMFDNSADVD-MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309
Query: 563 SCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLASSLT 604
V+WN +++S DD VR+W + S +T
Sbjct: 310 WSVSWNL-TGTILSSAGDDGKVRLW--KATYSNEFKCMSVIT 348
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 114 bits (287), Expect = 1e-26
Identities = 51/340 (15%), Positives = 97/340 (28%), Gaps = 84/340 (24%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ N H + + G +LAT S D T+ I++V+ T TL GH V +
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVD 60
Query: 355 WSPDS-SHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW--NRDGTKFVCG 410
W+ +L D + +W E ++ ++ S+ S W + G +
Sbjct: 61 WAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119
Query: 411 GIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
SDGK + F+ +
Sbjct: 120 S-----------------------------SDGK----------VSVVEFK--ENGTTSP 138
Query: 471 E-----DHPVMS--FTIDATDRLALLNVSTQG-----------VHLWDL----RDRILLR 508
V S + + N + + V +W + +L
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 509 KFQGVTQGQFTIHS-CF---GGANQDFVASGSEDGKVYIWHV-----KRELPIATLSGHT 559
+G + + + ++AS S+D IW + +
Sbjct: 199 TLEGHSD---WVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 560 RTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHL 599
+ +W+ ++A D V +W +L P
Sbjct: 255 DVLWRASWSLS-GNVLALSGGDNKVTLWKENLEGKWEPAG 293
Score = 77.7 bits (191), Expect = 4e-15
Identities = 41/259 (15%), Positives = 73/259 (28%), Gaps = 30/259 (11%)
Query: 291 CETTQVLNDHCDEVWFCKFSP-------------DGLKLATGSKDTTVIIWDVDPVTFTC 337
+ +++ H V ++P + K TG D V IW + T
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 338 QHRKTLEGHTLGVAYLAWSPD--SSHLLVVGPEDCHELWVWNIETE------LLRVKLNH 389
TLEGH+ V +AWSP L +D +W + E L +
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQGPWKKTLLKEEKF 253
Query: 390 SPEDSLTSCSWNRDGTKFVCGG----IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKS 445
D L SW+ G G + ++ ++EG+ + E + S
Sbjct: 254 P--DVLWRASWSLSGNVLALSGGDNKVT--LWKENLEGKWEPAGEVHQGGGGSGGGGATS 309
Query: 446 VLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRI 505
F D + + S + +
Sbjct: 310 KEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGV 369
Query: 506 LLRKFQGVTQGQFTIHSCF 524
+++ Q +F +
Sbjct: 370 SIKRLPTELQRKFLFDDVY 388
Score = 71.5 bits (175), Expect = 4e-13
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 291 CETTQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
V H V +++P G L S D V + + ++ H +
Sbjct: 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK--ENGTTSPIIIDAHAI 146
Query: 349 GVAYLAWSPDSSH 361
GV +W+P +
Sbjct: 147 GVNSASWAPATIE 159
Score = 51.1 bits (122), Expect = 9e-07
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + H + + Y + +A+ S D T++I+
Sbjct: 2 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIF 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 106 bits (267), Expect = 3e-25
Identities = 47/314 (14%), Positives = 95/314 (30%), Gaps = 59/314 (18%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLAT----GSKDTTVIIWDVDPVTFTCQHRKTLEGHT--L 348
+ V+ CK+ P K T + ++++ + + +E
Sbjct: 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ--HGDLKLLREIEKAKPIK 69
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSPE----DSLTSCSWNR 402
+ A S +L G L +WN+E + H D +
Sbjct: 70 CGTFGATSLQQRYL-ATGDFG-GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE 127
Query: 403 DGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
+ V G S +G V+ +W +A N E
Sbjct: 128 GAPEIVTG-----------------SRDGTVK---VWDPRQKDDPVA----------NME 157
Query: 462 HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTI 520
+ N + +R+ + G + L+DLR+ LR + G ++
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNM-ALRWETNIKNGVCSL 215
Query: 521 HSCFG--GANQDFVASGSEDGKVYIW-----HVKRELPIATLSGHTRTVSCVAWNPVYHQ 573
F + + + + S +GK +++ H + + H TV V P +
Sbjct: 216 --EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE 273
Query: 574 MIASVSDDCTVRIW 587
+ + + +W
Sbjct: 274 LFLTAGGAGGLHLW 287
Score = 104 bits (262), Expect = 1e-24
Identities = 48/325 (14%), Positives = 101/325 (31%), Gaps = 87/325 (26%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHR-KTLEGHT------LGVAYLAWS 356
F S LATG + IW+++ + +++GH G+ L
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLE----APEMPVYSVKGHKEIINAIDGIGGLGIG 126
Query: 357 PDSSHLLVVGPEDCHELWVWNIET-----ELLRVKLNHSPEDSL---TSCSWNRDGTKFV 408
+ +V G D + VW+ + + D ++N++
Sbjct: 127 EGAPE-IVTGSRDGT-VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC 184
Query: 409 CGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSN 467
G G ++ L+ + L +T+
Sbjct: 185 AG-----------------YDNGDIK---LFDLRNMA--LRWETNI-------------- 208
Query: 468 LLQEDHPVMSFTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQGVT-QG-QFTIHS 522
+ V S D D V+T H++D+R + + F V+ + + T+
Sbjct: 209 ----KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQ 264
Query: 523 -CFGGANQDFVASGSEDGKVYIWHVKREL-------------------PIATLSGHTRTV 562
N++ + G +++W + + + ++ T+ +
Sbjct: 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324
Query: 563 SCVAWNPVYHQMIASVSDDCTVRIW 587
S + W+P + S D TVR+
Sbjct: 325 SSLDWSPDKRGLCVCSSFDQTVRVL 349
Score = 90.5 bits (225), Expect = 7e-20
Identities = 32/264 (12%), Positives = 79/264 (29%), Gaps = 51/264 (19%)
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVVG--PEDCHELWVWNIET-ELLRVKLNHSPE--DS 394
+G V W P S+ + +G + ++ I+ +L ++ +
Sbjct: 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKC 70
Query: 395 LTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHH 453
T + + G + G + +W + + + H
Sbjct: 71 GTFGATSLQQRYLATG-----------------DFGGNLH---IWNLEAPEMPVYSVKGH 110
Query: 454 RIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDR----ILLR 508
+ + + A + S G V +WD R + +
Sbjct: 111 ----------KEIINAIDGIGGLGIGEGAP-EIV--TGSRDGTVKVWDPRQKDDPVANME 157
Query: 509 KFQGVTQGQFTIHSCFGGA-NQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCV 565
QG + FG A NQ+ V +G ++G + ++ ++ + V +
Sbjct: 158 PVQGENKRDCW-TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSL 215
Query: 566 AWNP--VYHQMIASVSDDCTVRIW 587
++ + + + S + ++
Sbjct: 216 EFDRKDISMNKLVATSLEGKFHVF 239
Score = 72.8 bits (179), Expect = 5e-14
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 17/102 (16%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKL-ATGSKDTTVIIWDVDP---------------VTFTCQ 338
H VW + P +L T + +W + V +
Sbjct: 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312
Query: 339 HRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET 380
+ + T ++ L WSPD L V D + V +
Sbjct: 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFD-QTVRVLIVTK 353
Score = 72.8 bits (179), Expect = 6e-14
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 24/140 (17%)
Query: 295 QVLNDHCDEVWFCKFSPDGL---KLATGSKDTTVIIWDVDPVTFTC-QHRKTLEGHTLGV 350
+ + + V +F + KL S + ++D+ T + + H V
Sbjct: 203 RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV 262
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP------------------E 392
+ P + L + L +W E + R K +
Sbjct: 263 WQVRHLPQNRELFLTAGGA-GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321
Query: 393 DSLTSCSWNRDGTK-FVCGG 411
++S W+ D VC
Sbjct: 322 QPISSLDWSPDKRGLCVCSS 341
Score = 43.1 bits (102), Expect = 2e-04
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 268 KVDESLENVSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLA-TGSKDTTVI 326
K + ++ + + Q + + +SPD L S D TV
Sbjct: 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347
Query: 327 IWDV 330
+ V
Sbjct: 348 VLIV 351
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 106 bits (267), Expect = 3e-25
Identities = 45/325 (13%), Positives = 93/325 (28%), Gaps = 100/325 (30%)
Query: 295 QVLNDHCD-----EVWFCKFSPDG----LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEG 345
++L + D + C ++ D LA + I + T Q K G
Sbjct: 58 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI----TMQCIKHYVG 113
Query: 346 HTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLN---HSPEDSLTSCSWN 401
H + L + P +LL+ +D H L +WNI+T L+ + H D + S ++
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKD-HALRLWNIQTDTLVAIFGGVEGHR--DEVLSADYD 170
Query: 402 RDGTKFVCGG----IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRT 457
G K + G ++ LW + + + A +
Sbjct: 171 LLGEKIMSCGMDHSLK-----------------------LWRINSKRMMNAIKESY---- 203
Query: 458 YNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQ 517
+ + +Q +H D R
Sbjct: 204 -------------------DYNPN----KTNRPFISQKIHFPDFSTR------DIHRNYV 234
Query: 518 FTIHSCFGGANQDFVASGSEDGKVYIWHVKRELP--------------IATLSGHTRTVS 563
+ + G D + S S + + W + + +
Sbjct: 235 DCV--RWLG---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289
Query: 564 CVAWNP-VYHQMIASVSDDCTVRIW 587
+ ++ + +M+A + + +W
Sbjct: 290 YMRFSMDFWQKMLALGNQVGKLYVW 314
Score = 106 bits (267), Expect = 3e-25
Identities = 49/304 (16%), Positives = 102/304 (33%), Gaps = 61/304 (20%)
Query: 295 QVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQH-RKTLEGHTLGVAY 352
+ H + + KF P D L + SKD + +W++ T T +EGH V
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLS 166
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ + + D H L +W I + ++ +N + T
Sbjct: 167 ADYDLLGEKI-MSCGMD-HSLKLWRINSKRMMNAIKESY--------DYNPNKTNRPFIS 216
Query: 412 IRGQFYQCDIE-GQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQ 470
+ F D + ++ V+C+ R G +L+ + I + + D
Sbjct: 217 QKIHFP--DFSTRDIHRNY----VDCV--RWLGDLILSKSCENAIVCWKPGKMEDDIDKI 268
Query: 471 EDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGG-ANQ 529
+ + +L +F + + F Q
Sbjct: 269 KPSE---------------------------SNVTILGRFDYSQCDIWYM--RFSMDFWQ 299
Query: 530 DFVASGSEDGKVYIWHVK----RELPIATLSGHTR--TVSCVAWNPVYHQMIASVSDDCT 583
+A G++ GK+Y+W ++ + TL+ H + +++ ++ +V DD +
Sbjct: 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD-SSILIAVCDDAS 358
Query: 584 VRIW 587
+ W
Sbjct: 359 IWRW 362
Score = 91.2 bits (227), Expect = 5e-20
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 469 LQEDH--PVMS--FTIDATDRLALLNVSTQG---VHLWDLRDRILLRKFQGVTQGQFTIH 521
L+EDH P+ F + + L+ +T G V L++ + +R Q +
Sbjct: 13 LKEDHNQPLFGVQFNWHSKEGDPLV-FATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 71
Query: 522 ------SCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMI 575
+ + +A G + I + I GH ++ + ++P ++
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 131
Query: 576 ASVSDDCTVRIW 587
SVS D +R+W
Sbjct: 132 LSVSKDHALRLW 143
Score = 72.3 bits (178), Expect = 7e-14
Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 55/282 (19%)
Query: 334 TFTCQHRKTLEGHT---LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNH 389
+F C + E H GV + S + L+ + ++ + +R+ ++
Sbjct: 6 SFKCVNS-LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR-VTLYECHSQGEIRLLQSY 63
Query: 390 S---PEDSLTSCSW----NRDGTKFVCGGIRGQFYQCDIE-GQVLDSWEG--VRVNCL-W 438
+++ +C+W N G RG + Q + + G +N L +
Sbjct: 64 VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123
Query: 439 CRSDGKSVLAADTHHRIRTYNFE----HLTDSNLLQEDHPVMS--FTIDATDRLALLNVS 492
D +L+ H +R +N + + V+S + + ++ S
Sbjct: 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE-KIM----S 178
Query: 493 -----TQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVK 547
+ + LW + + ++ + + N + K++
Sbjct: 179 CGMDHS--LKLWRINSKRMMNAIKE--------SYDY---NPNKTNRPFISQKIHFPDFS 225
Query: 548 RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGP 589
T H V CV W +I S S + + W P
Sbjct: 226 ------TRDIHRNYVDCVRWLG---DLILSKSCENAIVCWKP 258
Score = 69.6 bits (171), Expect = 6e-13
Identities = 30/263 (11%), Positives = 72/263 (27%), Gaps = 64/263 (24%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+ H DEV + G K+ + D ++ +W ++ + + ++
Sbjct: 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESY----- 203
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
++P+ ++ + H + T + H + + W G +
Sbjct: 204 -DYNPNKTN-RPFISQKIH---FPDFST--RDI---HR--NYVDCVRW--LGDLILSK-- 247
Query: 413 RGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
S E + W + + S
Sbjct: 248 ---------------SCENAIV---CWKPGKMEDDIDKIKPSESNVTILGRFDYS----- 284
Query: 472 DHPVMS--FTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGAN 528
+ F++D ++ L + G +++WDL + H C
Sbjct: 285 QCDIWYMRFSMDFWQKM-LALGNQVGKLYVWDLEVEDPHKAKCTTLTH----HKCGAAIR 339
Query: 529 Q-------DFVASGSEDGKVYIW 544
Q + + +D ++ W
Sbjct: 340 QTSFSRDSSILIAVCDDASIWRW 362
Score = 68.8 bits (169), Expect = 1e-12
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 294 TQVLNDHCDEVWFCKFSPD--GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLG-- 349
+ ++W+ +FS D LA G++ + +WD++ TL H G
Sbjct: 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWN 377
+ ++S DSS L+ +D +W W+
Sbjct: 338 IRQTSFSRDSSI-LIAVCDD-ASIWRWD 363
Score = 65.7 bits (161), Expect = 1e-11
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 31/137 (22%)
Query: 293 TTQVLNDHCDEVW---FCKFSPDGLKLATGS-KDTTVIIWDVDPVTFTCQHRKTLEGHT- 347
+ DH ++ F S +G L + V +++ + + L+ +
Sbjct: 10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH----SQGEIRLLQSYVD 65
Query: 348 ----LGVAYLAWSPDSSH---LLVVGPEDCHELWVWNIETELLRVKLN-H---------S 390
AW+ DS+ LL V + + N T H
Sbjct: 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFH 124
Query: 391 PEDS--LTSCSWNRDGT 405
P D L S S D
Sbjct: 125 PRDPNLLLSVSK--DHA 139
Score = 45.7 bits (109), Expect = 2e-05
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 299 DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
+ FS D L D ++ WD
Sbjct: 333 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 106 bits (267), Expect = 6e-25
Identities = 52/323 (16%), Positives = 99/323 (30%), Gaps = 82/323 (25%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
D V K+S DG L+ G + V I+DV+ + +T+ GH V L+W
Sbjct: 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLRTMAGHQARVGCLSW- 184
Query: 357 PDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG--- 411
+ H+L G + ++ + HS + +W DG + GG
Sbjct: 185 --NRHVLSSGSRSGA-IHHHDVRIANHQIGTLQGHS--SEVCGLAWRSDGLQLASGGNDN 239
Query: 412 -IRGQFYQCDI----EGQVLDSWEG--VRVNCL-WCRSDGKSVLAADTHHRIRTYNFEHL 463
++ I + V + WC ++LA
Sbjct: 240 VVQ-------IWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLA--------------- 276
Query: 464 TDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS- 522
T+D +H W+ + +Q + S
Sbjct: 277 -----------TGGGTMDKQ------------IHFWNAATGARVNTVDAGSQ----VTSL 309
Query: 523 CFGGANQDFV-ASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYHQMIASVS 579
+ +++ + G D + IW + H V A +P +++++ +
Sbjct: 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD-GRILSTAA 368
Query: 580 DDCTVRIW----GPHLNTNKSPH 598
D ++ W G H+
Sbjct: 369 SDENLKFWRVYDGDHVKRPIPIT 391
Score = 98.8 bits (247), Expect = 2e-22
Identities = 58/316 (18%), Positives = 100/316 (31%), Gaps = 79/316 (25%)
Query: 290 PCETTQVLN--DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE-GH 346
+VL+ D+ + L + + + V +W+ D + E
Sbjct: 78 NTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNAD----SGSVSALAETDE 133
Query: 347 TLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGT 405
+ VA + WS D S L VG + + ++++E+ LR H + SWN
Sbjct: 134 STYVASVKWSHDGSF-LSVGLGNG-LVDIYDVESQTKLRTMAGHQ--ARVGCLSWN--RH 187
Query: 406 KFVCGGIRGQFYQCDIE--GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
G G + D+ + + +G V L RSDG LA
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ-LA------------- 233
Query: 462 HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIH 521
+ N D V +WD R I H
Sbjct: 234 --SGGN-------------DNV------------VQIWDARSSIPKFTKTN--------H 258
Query: 522 S--------CFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQ 573
+ C +N G+ D +++ W+ + T+ + V+ + W+P +
Sbjct: 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHS-K 316
Query: 574 MIASV--SDDCTVRIW 587
I S D + IW
Sbjct: 317 EIMSTHGFPDNNLSIW 332
Score = 81.9 bits (203), Expect = 7e-17
Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 70/290 (24%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHR-KTLEGHTLG 349
+ + H V S + L++GS+ + DV H+ TL+GH+
Sbjct: 166 QTKLRTMAGHQARVG--CLSWNRHVLSSGSRSGAIHHHDVR----IANHQIGTLQGHSSE 219
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
V LAW D L G D + + +W+ + K NH+ ++ + +W + +
Sbjct: 220 VCGLAWRSDGLQL-ASGGND-NVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLL 275
Query: 409 CGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNL 468
G G + + W + G V D ++ + + S
Sbjct: 276 ATG-GGTMDKQ------------IH---FWNAATGARVNTVDAGSQVTSLIW--SPHSKE 317
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQG-----VHLWDLRDRILLR--KFQG----VTQGQ 517
+ +ST G + +W L + V
Sbjct: 318 I---------------------MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL--- 353
Query: 518 FTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIAT-LSGHTRTVSCVA 566
+S + +++ + D + W V + + S +
Sbjct: 354 ---YSALS-PDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 104 bits (262), Expect = 8e-25
Identities = 52/317 (16%), Positives = 105/317 (33%), Gaps = 88/317 (27%)
Query: 295 QVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPV-TFTCQHRKTLEGHTLGVAY 352
L H V S L + S+D T+I W + ++ +GH+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ D ++ + D L +W++ T E + + H + S ++ + + G
Sbjct: 71 CTLTADGAY-ALSASWD-KTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGS 126
Query: 412 ----IRGQFYQCDIEGQVLDSWEG--VRVNCL------WCRSDGKSVLAADTHHRIRTYN 459
I+ I+GQ L + G V+ + D ++++A
Sbjct: 127 RDKTIK----VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA---------- 172
Query: 460 FEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFT 519
N D V W+L + F G
Sbjct: 173 ------GN-------------DKM------------VKAWNLNQFQIEADFIG------- 194
Query: 520 IHS------CF---GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPV 570
H+ G +AS +DG++ +W++ + + TLS V +A++P
Sbjct: 195 -HNSNINTLTASPDG----TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPN 248
Query: 571 YHQMIASVSDDCTVRIW 587
+A+ + ++++
Sbjct: 249 -RYWLAAATAT-GIKVF 263
Score = 88.0 bits (219), Expect = 3e-19
Identities = 42/303 (13%), Positives = 84/303 (27%), Gaps = 94/303 (31%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
ET Q H +V + +GS+D T+ +W + Q TL GH V+
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-----KGQCLATLLGHNDWVS 152
Query: 352 YLAWSPDSSH-----LLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGT 405
+ P+ ++ D + WN+ + H+ ++ + + + DGT
Sbjct: 153 QVRVVPNEKADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGT 209
Query: 406 KFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLT 464
+G + LW + K++ + + F
Sbjct: 210 LIASA-----------------GKDGEIM---LWNLAAKKAMYTLSAQDEVFSLAF---- 245
Query: 465 DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
P +R L + G+ ++ L + L+ + G
Sbjct: 246 --------SP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG-------- 280
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
+AW+ Q + + D +
Sbjct: 281 -----------------------------YSKAAEPHAVSLAWSAD-GQTLFAGYTDNVI 310
Query: 585 RIW 587
R+W
Sbjct: 311 RVW 313
Score = 79.1 bits (196), Expect = 3e-16
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ H + SPDG +A+ KD +++W++ + TL V
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA----AKKAMYTLSAQD-EV 240
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-----ELLRVKLNHSP--EDSLTSCSWNRD 403
LA+SP+ + L + V++++ +L +S E S +W+ D
Sbjct: 241 FSLAFSPN-RYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 404 GTKFVCGG 411
G G
Sbjct: 298 GQTLFAGY 305
Score = 77.9 bits (193), Expect = 6e-16
Identities = 58/281 (20%), Positives = 90/281 (32%), Gaps = 78/281 (27%)
Query: 336 TCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET------ELLRVKLNH 389
R TLEGH V LA S +LL+ D L W + +R H
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 390 SPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLA 448
S + C+ DG + SW+ +R LW D
Sbjct: 65 S--HIVQDCTLTADGAYALSA-----------------SWDKTLR---LW---D------ 93
Query: 449 ADTHHRIRTYNFE-HLTDSNLLQEDHPVMS--FTIDATDRLALLNVS-----TQGVHLWD 500
T + F H VMS A+ + S T + +W
Sbjct: 94 VATGETYQR--FVGH---------KSDVMSVDIDKKAS-MII----SGSRDKT--IKVWT 135
Query: 501 LRDRILLRKFQG----VTQGQFTIHSCFGGANQD--FVASGSEDGKVYIWHVKRELPIAT 554
++ + L G V+Q + A+ D + S D V W++ + A
Sbjct: 136 IKGQ-CLATLLGHNDWVSQVRV---VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 555 LSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNK 595
GH ++ + +P +IAS D + +W +L K
Sbjct: 192 FIGHNSNINTLTASPD-GTLIASAGKDGEIMLW--NLAAKK 229
Score = 47.9 bits (115), Expect = 5e-06
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 287 EEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
++ E +S DG L G D + +W V
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 105 bits (264), Expect = 1e-24
Identities = 38/313 (12%), Positives = 81/313 (25%), Gaps = 56/313 (17%)
Query: 290 PCETTQVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL 348
+ D + KF+ + +L S + D Q +
Sbjct: 107 NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS--GSVIQVFAKTDSWDY 164
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
+ S +L G L + ++ + + H +T +N +
Sbjct: 165 WYCCVDVSVS-RQMLATGDST-GRLLLLGLDGHEIFKEKLHK--AKVTHAEFNPRCDWLM 220
Query: 409 CGG-----IR------GQFYQCDIEGQVLDSWEGVRVNCL-WCRSDGKSVLAADTHHRIR 456
++ + I + VN + +D +L D + IR
Sbjct: 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP----VNAAYFNPTDSTKLLTTDQRNEIR 276
Query: 457 TYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQG 516
Y+ + + + HP Q H L +
Sbjct: 277 VYSSYDWSKPDQI-IIHP-----------------HRQFQH---------LTPIKATWHP 309
Query: 517 QFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRT--VSCVAWNPVYHQM 574
+ + G D ++ + I+ + L +S ++P +
Sbjct: 310 MYDL--IVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT-GDV 366
Query: 575 IASVSDDCTVRIW 587
+AS + IW
Sbjct: 367 LASGMGF-NILIW 378
Score = 102 bits (256), Expect = 1e-23
Identities = 36/318 (11%), Positives = 78/318 (24%), Gaps = 87/318 (27%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATG--SKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
Q + + S G + I + + + +T V
Sbjct: 23 QKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLK----SYKLHRTASPFDRRVTS 78
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNH------------SPEDS--LTSC 398
L W P + VG + + +W+ + + + + ++ L
Sbjct: 79 LEWHPTHPTTVAVGSKGGD-IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIEG---QVLDSWEG--VRVNCLWCRSDGKSVLAADTHH 453
S G + D G QV + C+ + + D+
Sbjct: 138 SI--RGA------TTLR----DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185
Query: 454 RIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGV 513
R+ L L + K +
Sbjct: 186 RLL-----------------------------------------LLGLDGH-EIFKEKLH 203
Query: 514 TQGQFTIHS-CFGGANQDFVASGSEDGKVYIWHVKRELPIATL---SGHTRTVSCVAWNP 569
+ F +A+ S D V +W ++ + H + V+ +NP
Sbjct: 204 KAK---VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 570 VYHQMIASVSDDCTVRIW 587
+ + +R++
Sbjct: 261 TDSTKLLTTDQRNEIRVY 278
Score = 88.2 bits (219), Expect = 5e-19
Identities = 35/266 (13%), Positives = 74/266 (27%), Gaps = 46/266 (17%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ + S LATG +++ + + H V
Sbjct: 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-----DGHEIFKEKLHKAKV 207
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP--EDSLTSCSWN-RDGTKF 407
+ ++P L+ D + +W++ + E + + +N D TK
Sbjct: 208 THAEFNPRCDWLMATSSVD-ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL 266
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDS 466
+ +R ++ D H + + +
Sbjct: 267 LTT-----------------DQRNEIR---VYSSYDWSKPDQIIIHP-----HRQFQHLT 301
Query: 467 NLLQEDHPVMS--FTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCF 524
+ HP+ D LLN + + ++D L+ + + I S
Sbjct: 302 PIKATWHPMYDLIVAGRYPDDQLLLNDK-RTIDIYDANSGGLVHQLRD--PNAAGIISLN 358
Query: 525 GGA---NQDFVASGSEDGKVYIWHVK 547
D +ASG + IW+ +
Sbjct: 359 --KFSPTGDVLASGM-GFNILIWNRE 381
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 105 bits (263), Expect = 1e-24
Identities = 35/320 (10%), Positives = 75/320 (23%), Gaps = 77/320 (24%)
Query: 294 TQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL 353
T V+ +++P+ K A GS + I + + + V L
Sbjct: 89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148
Query: 354 AWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP-----------------EDSLT 396
W P+S L G D +++ + + + +P +
Sbjct: 149 DWHPNSVL-LAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206
Query: 397 SCSWNRDGTKFVCGG----IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTH 452
++ +G++ + L +V +
Sbjct: 207 GVCFSANGSRVAWVSHDSTVC-----------------------LADADKKMAVATLASE 243
Query: 453 HRIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVSTQGVHLWDLRDRILLRKF 510
P+++ F T+ + L+ F
Sbjct: 244 T-------------------LPLLAVTFI---TESSLVAAGHDCFPVLFTYDSAAGKLSF 281
Query: 511 QGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP- 569
G S G + + +L H +VS ++
Sbjct: 282 GGRLDV--PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSG 337
Query: 570 --VYHQMIASVSDDCTVRIW 587
+ D + IW
Sbjct: 338 GKAKCSQFCTTGMDGGMSIW 357
Score = 98.1 bits (245), Expect = 3e-22
Identities = 43/326 (13%), Positives = 88/326 (26%), Gaps = 53/326 (16%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
+ + ++ D ++A + V I++ L+ H V + W+PDS
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDWAPDS 64
Query: 360 SHLLVVGPEDCHELWVWNIET---ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG----I 412
+ +V D + +VW ++ + V L + + W + KF G I
Sbjct: 65 NR-IVTCGTDRN-AYVWTLKGRTWKPTLVILRIN--RAARCVRWAPNEKKFAVGSGSRVI 120
Query: 413 RGQFYQCDIEGQVLDSWEGVR--------VNCLWCRSDGKSVLAADTHHRIRTYNFEHLT 464
C E + D W V L + + A + R ++
Sbjct: 121 S----ICYFEQEN-DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY--I 173
Query: 465 DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVH---------------------LWDLRD 503
+ + + + + S VH L D
Sbjct: 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233
Query: 504 RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVS 563
++ + T + F + VA+G D ++ + G
Sbjct: 234 KMAVATLASETLPLLAV--TFITESS-LVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPK 289
Query: 564 CVAWNPVYHQMIASVSDDCTVRIWGP 589
+ + + D
Sbjct: 290 QSSQRGLTARERFQNLDKKASSEGSA 315
Score = 49.6 bits (119), Expect = 2e-06
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 552 IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+A S +SC AWN IA ++ V I+
Sbjct: 1 MAYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIY 35
Score = 38.4 bits (90), Expect = 0.006
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 343 LEGHTLG---VAYLAWSPDSSHLLVVGPEDCHELWVWNIET---ELLRVKLNHSPEDSLT 396
+ H+ ++ AW+ D + + + P + HE+ ++ + H+ +T
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQ-IAICPNN-HEVHIYEKSGNKWVQVHELKEHN--GQVT 56
Query: 397 SCSWNRDGTKFVCGG 411
W D + V G
Sbjct: 57 GVDWAPDSNRIVTCG 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 105 bits (263), Expect = 2e-24
Identities = 44/323 (13%), Positives = 95/323 (29%), Gaps = 64/323 (19%)
Query: 300 HCDEVWFCKFSPDGLK-LATGSKDTTVIIWDVDPVTFTCQHR-KTLEGHTLGVAYLAWSP 357
+ + SP L TGS + IW++ + + + V + P
Sbjct: 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121
Query: 358 DSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFY 417
+ V +D ++ V + ++ + +
Sbjct: 122 N-FDAFAVSSKD-GQIIVLKVNHYQQESEVKFLNCECIRK-------------------- 159
Query: 418 QCDIEGQVLDSWEGVRVNCLWCRSDGKSVLA-ADTHHRIRTYNFEHLTDSNLLQEDH--- 473
I + E V ++ KS+L R+ ++ L +++
Sbjct: 160 ---INLKNFGKNEYA-VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215
Query: 474 PVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSC----FGGAN 528
V S ID + L+ +T+G + +WD+R +L+R + I F G N
Sbjct: 216 AVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA--PITHVEVCQFYGKN 272
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPV------------------ 570
V GS + IW+ + S + P+
Sbjct: 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL 332
Query: 571 ------YHQMIASVSDDCTVRIW 587
+++ + ++ ++
Sbjct: 333 STISVSNDKILLTDEATSSIVMF 355
Score = 101 bits (252), Expect = 6e-23
Identities = 36/363 (9%), Positives = 88/363 (24%), Gaps = 109/363 (30%)
Query: 299 DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHR------------KTLEGH 346
D V P+ A SKD +I+ V+ + + K +
Sbjct: 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168
Query: 347 TLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGT 405
V A+ + LLV + +++I T E L++ N +++S + +
Sbjct: 169 EYAVRMRAFVNEEKSLLVALTNLS-RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC 227
Query: 406 KFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD 465
+ G RG + +W + + +
Sbjct: 228 VLILGTTRG-------------------IIDIWDIRFNVLIRSWSFGDHAPITH------ 262
Query: 466 SNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQG----VTQGQFTI 520
V + + ++ S++ + +W+ F + F
Sbjct: 263 ---------VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313
Query: 521 H------------------SCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTV 562
S +N + + + ++ + + +R
Sbjct: 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFS 373
Query: 563 SCVAWN-----------------------PVYHQ---------------MIASVSDDCTV 584
+YH ++ + + +
Sbjct: 374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433
Query: 585 RIW 587
I+
Sbjct: 434 GIF 436
Score = 59.4 bits (144), Expect = 1e-09
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 509 KFQGVTQGQFTIHS-------CFGGANQDFVASGSEDGKVYIWHVKRELPIATLS----- 556
+G + ++ +GS+ G + IW++K + S
Sbjct: 49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY 108
Query: 557 GHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSP 597
+ TV+ + P + A S D + + + +S
Sbjct: 109 DCSSTVTQITMIPNFDA-FAVSSKDGQIIVLKVNHYQQESE 148
Score = 48.6 bits (116), Expect = 4e-06
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 543 IWHVKRELPIATLSGHT-RTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ +++ +L IATL + +++ A +P + + SD ++IW
Sbjct: 47 MGNLRGKL-IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIW 91
Score = 35.5 bits (82), Expect = 0.048
Identities = 11/114 (9%), Positives = 31/114 (27%), Gaps = 14/114 (12%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
E + L T ++++++ ++ K + +
Sbjct: 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN----ELSSSKAVISPSRFSD 374
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDG 404
+ +++L ++ L + + L H D + S S
Sbjct: 375 VFIPTQVTANLTML-------LRKMKRTSTHSVDDSLYHH--DIINSISTCEVD 419
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 103 bits (260), Expect = 3e-24
Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 65/289 (22%)
Query: 309 FSPDGLKL-ATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSH--LLVV 365
F G + + + D + D+ + + L++SP + L+
Sbjct: 10 FGTSGTSMFGSATTDNHNPMKDI----------EVTSSPDDSIGCLSFSPPTLPGNFLIA 59
Query: 366 GPEDCHELWVWNIET---ELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIE 422
G + W ++ + + + H + W+ DG+K CD
Sbjct: 60 GSWAND-VRCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDDGSKVFTAS-------CD-- 107
Query: 423 GQVLDSWEGVRVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLTDSNLLQEDHPVMSFTID 481
+W S +++ A H ++T ++ + + + M+ + D
Sbjct: 108 KTA----------KMWDLSSNQAIQIA-QHDAPVKTIHWIKAPNYSCV------MTGSWD 150
Query: 482 ATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKV 541
T + WD R + Q + VA+ V
Sbjct: 151 KT------------LKFWDTRSSNPMMVLQL--PERCYCADVIY--PMAVVATAERGLIV 194
Query: 542 YIWHVKRELPIATLSGHTRTVSCVAWNP---VYHQMIASVSDDCTVRIW 587
Y + S CVA A S + V I
Sbjct: 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Score = 100 bits (252), Expect = 3e-23
Identities = 53/318 (16%), Positives = 97/318 (30%), Gaps = 75/318 (23%)
Query: 295 QVLNDHCDEVWFCKFSPD---GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+V + D + FSP G L GS V W+V K + HT V
Sbjct: 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQTIPKAQQMHTGPVL 90
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNR--DGTKFVC 409
+ WS D S + D +W++ + H + + W + + + +
Sbjct: 91 DVCWSDDGSK-VFTASCDKT-AKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMT 146
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNL 468
G SW+ ++ W ++ R
Sbjct: 147 G-----------------SWDKTLK---FWDTRSSNPMMVLQLPERC------------- 173
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLR--DRILLRKFQGVTQGQFTIHSCF-- 524
+ D +A++ + +G+ ++ L R + + + F
Sbjct: 174 ---------YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV-AIFKD 223
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELP---IATLSGHTRT------------VSCVAWNP 569
A GS +G+V I ++ P T H V+ +A++P
Sbjct: 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP 283
Query: 570 VYHQMIASVSDDCTVRIW 587
V H +A+V D W
Sbjct: 284 V-HGTLATVGSDGRFSFW 300
Score = 89.6 bits (223), Expect = 1e-19
Identities = 38/299 (12%), Positives = 71/299 (23%), Gaps = 79/299 (26%)
Query: 293 TTQVLNDHCDEVWFCKF--SPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ H V + +P+ + TGS D T+ WD + L+
Sbjct: 119 QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR----SSNPMMVLQLPERCY 174
Query: 351 AYLAWSPDSSHLLVVGPEDCHE-LWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVC 409
P VV + ++ + R + + + +D
Sbjct: 175 CADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDK----- 224
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNL 468
Q G L S EG V + + HR + T+++
Sbjct: 225 --------QNKPTGFALGSIEGRVAI-HYINPPNPAKDNFTFKCHR------SNGTNTSA 269
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGAN 528
Q+ + V + L
Sbjct: 270 PQDIYAVNG-----------IAFHPVHGTL------------------------------ 288
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
A+ DG+ W + T + +S +N + A S +
Sbjct: 289 ----ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN-GNIFAYASSYDWSKGH 342
Score = 69.2 bits (170), Expect = 7e-13
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
T V F P LAT D WD D KT E ++
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD----ARTKLKTSEQLDQPIS 319
Query: 352 YLAWSPDSSHLLVVG-------------PEDCHELWVWNIETEL 382
++ + + P+ + +++ N EL
Sbjct: 320 ACCFNHNGNI-FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEEL 362
Score = 60.7 bits (148), Expect = 5e-10
Identities = 43/262 (16%), Positives = 73/262 (27%), Gaps = 82/262 (31%)
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSW- 400
+L G T + + + D H + +IE SP+DS+ S+
Sbjct: 2 SLFGTTS-----GFGTSGTSMFGSATTDNH-NPMKDIEV-------TSSPDDSIGCLSFS 48
Query: 401 --NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRT 457
G + G SW VR W + D+ I
Sbjct: 49 PPTLPGNFLIAG-----------------SWANDVR---CW---E-----VQDSGQTIPK 80
Query: 458 YNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVST---QGVHLWDLRDRILLRKFQG 512
H PV+ ++ D + ++ + + +WDL +
Sbjct: 81 AQQMH---------TGPVLDVCWSDDGS-KVF----TASCDKTAKMWDLSSNQAI----- 121
Query: 513 VTQGQFTIHS------CFGGA-NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCV 565
Q H + A N V +GS D + W + P+ L R
Sbjct: 122 ----QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177
Query: 566 AWNPVYHQMIASVSDDCTVRIW 587
P ++A+ V
Sbjct: 178 VIYP--MAVVATAERGLIVYQL 197
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 102 bits (258), Expect = 3e-24
Identities = 46/330 (13%), Positives = 96/330 (29%), Gaps = 70/330 (21%)
Query: 292 ETTQVLN--DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD-PVTFTCQHRKTLEGHTL 348
+ +N +H + V S + TG K V +WD+ P + +
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIE--TELLRVKLN-HSPEDSLTSCSWNRDGT 405
+ PD L+VG E L +W++ T ++ +L + + + + + D
Sbjct: 99 YIRSCKLLPDGCT-LIVGGEAST-LSIWDLAAPTPRIKAELTSSA--PACYALAISPDSK 154
Query: 406 KFVCGG----IRGQFYQCDIE-GQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTY 458
I D+ ++ ++G +C+ +DG + + +R++
Sbjct: 155 VCFSCCSDGNIA----VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 459 NFEHLTDSNLLQEDH--PVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDRILLRK 509
+ L Q D + S + LA V + + +
Sbjct: 211 DLR--EGRQLQQHDFTSQIFSLGYCPTGE-WLA----VGMESSN--VEVLHVNKP-DKYQ 260
Query: 510 FQGVTQGQFTIHSCFGGANQDFV------------ASGSEDGKVYIWHVKRELPIATLSG 557
H V S +D + W I
Sbjct: 261 LHL--------HE-------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-K 304
Query: 558 HTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ +V + + I + S D ++
Sbjct: 305 ESSSVLSCDISV-DDKYIVTGSGDKKATVY 333
Score = 84.9 bits (211), Expect = 4e-18
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 7/128 (5%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
+ + + + CK PDG L G + +T+ IWD+ T + L
Sbjct: 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA--ELT 138
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRD 403
LA SPDS D + + VW++ + L + H+ D + + D
Sbjct: 139 SSAPACYALAISPDSKV-CFSCCSDGN-IAVWDLHNQTLVRQFQGHT--DGASCIDISND 194
Query: 404 GTKFVCGG 411
GTK GG
Sbjct: 195 GTKLWTGG 202
Score = 78.3 bits (194), Expect = 7e-16
Identities = 36/259 (13%), Positives = 68/259 (26%), Gaps = 65/259 (25%)
Query: 343 LEGHTLG--VAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSW 400
+G + D V P D + LNH + + + +
Sbjct: 3 FQGAMGSKPAYSFHVTADGQMQPVPFPPD-ALIGPGIPRHARQINTLNHG--EVVCAVTI 59
Query: 401 NRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNF 460
+ G V+ +W S +
Sbjct: 60 SNPTRHVYTG-----------------GKGCVK---VWDISHPGNK-------------- 85
Query: 461 EHLTDSNLLQEDHPVMS--FTIDATDRLALLNVS-----TQGVHLWDLRDR--ILLRKFQ 511
++ + L D+ + S D L T + +WDL + +
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLPDGC-TLI----VGGEAST--LSIWDLAAPTPRIKAELT 138
Query: 512 GVTQGQFTIHS-CFGGANQD--FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWN 568
++ + D S DG + +W + + + GHT SC+ +
Sbjct: 139 SSAPA---CYALAI---SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 569 PVYHQMIASVSDDCTVRIW 587
+ + D TVR W
Sbjct: 193 N-DGTKLWTGGLDNTVRSW 210
Score = 61.7 bits (151), Expect = 2e-10
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 300 HCDEVWFCKFSPDGLKLAT-GSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPD 358
+ + DG D + + TL H V + S
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----HARQINTL-NHGEVVCAVTISNP 62
Query: 359 SSHLLVVGPEDCHELWVWNIETELLRVKLNHSP----EDSLTSCSWNRDGTKFVCGG 411
+ H + G + C + VW+I + ++ ++ + SC DG + GG
Sbjct: 63 TRH-VYTGGKGC--VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Score = 49.4 bits (119), Expect = 2e-06
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
V C S D + TGS D +++V
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 31.7 bits (73), Expect = 0.60
Identities = 2/33 (6%), Positives = 5/33 (15%)
Query: 557 GHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGP 589
++ D + P
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIP 39
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 103 bits (257), Expect = 4e-24
Identities = 37/305 (12%), Positives = 87/305 (28%), Gaps = 57/305 (18%)
Query: 302 DEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSH 361
D + K P L S D ++ ++ D ++L + + + ++
Sbjct: 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDL 70
Query: 362 LLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNR-DGTKFVCGGIRGQFYQCD 420
+ VG E+ ++ L ++ E +L C + K +
Sbjct: 71 QIYVGTVQ-GEILKVDLIGSPSFQALTNN-EANLGICRICKYGDDKLIAA---------- 118
Query: 421 IEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFT 479
SW+G + + + + A + FT
Sbjct: 119 -------SWDGLIE---VIDPRNYGDGVIAVKNLNSNNTK-------------VKNKIFT 155
Query: 480 IDATDRLALLNVSTQGVHLWDLR--DRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSE 537
+D ++ ++ V + L + + + Q + + + A S
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY-ACSSI 214
Query: 538 DGKVYIWHVKRELPIA------TLSGHTRT---------VSCVAWNPVYHQMIASVSDDC 582
DG+V + + H V+ + ++P H+ + + D
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDG 273
Query: 583 TVRIW 587
+ W
Sbjct: 274 IISCW 278
Score = 76.8 bits (189), Expect = 2e-15
Identities = 32/312 (10%), Positives = 84/312 (26%), Gaps = 57/312 (18%)
Query: 299 DHCDEVWFCKFSPD-GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSP 357
+ + C F + L++ G+ ++ D+ + L + +
Sbjct: 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI----GSPSFQALTNNEANLGICRICK 109
Query: 358 DSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSC-----SWNRDGTKFVCGGI 412
L+ D + V + V + + T + + + ++ + G
Sbjct: 110 YGDDKLIAASWDGL-IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168
Query: 413 RGQFYQCDIE------GQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDS 466
Q + G + +S ++ + + A
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA------------------ 210
Query: 467 NLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CF- 524
+ID + + + R T + ++S F
Sbjct: 211 ----------CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260
Query: 525 --GGANQDFVASGSEDGKVYIWHVKRELPIATLS-GHTRTVSCVAWNPVYHQMIASVSDD 581
F+ + DG + W+++ I + + +V +A + ++ + D
Sbjct: 261 PRHK----FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATSD 313
Query: 582 CTVRIWGPHLNT 593
T + T
Sbjct: 314 DTFKTNAAIDQT 325
Score = 66.4 bits (162), Expect = 5e-12
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 6/128 (4%)
Query: 292 ETTQVLNDHCDEVWFCKF-SPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ Q L ++ + C+ KL S D + + D K L + V
Sbjct: 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149
Query: 351 AYLAWSPDSS-HLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSC--SWNRDGTK 406
++ D++ L+VG + + + + E + S ++
Sbjct: 150 KNKIFTMDTNSSRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208
Query: 407 FVCGGIRG 414
+ C I G
Sbjct: 209 YACSSIDG 216
Score = 57.2 bits (138), Expect = 5e-09
Identities = 20/212 (9%), Positives = 60/212 (28%), Gaps = 49/212 (23%)
Query: 385 VKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDG 443
V++ +P+D ++ + + SW+G + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLIT-----------------SWDGSLT---VYKFDIQ 43
Query: 444 KSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVSTQG-VHLWD 500
+ + HP++ F + ++ + + QG + D
Sbjct: 44 AKNVDLLQS-------LRY---------KHPLLCCNFIDNTDLQIYV--GTVQGEILKVD 85
Query: 501 LRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTR 560
L + C G ++ + + S DG + + + +
Sbjct: 86 LIGSPSFQALTNNEANLGICRICKYGDDK--LIAASWDGLIEVIDPRNYGDGVIAVKNLN 143
Query: 561 TVSCVAWNPVY-----HQMIASVSDDCTVRIW 587
+ + N ++ + ++ V+ +
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
Score = 50.2 bits (120), Expect = 9e-07
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+ V +FSP L T D + W++ K + V
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---FNEDSVVK 299
Query: 353 LAWSPD 358
+A S +
Sbjct: 300 IACSDN 305
Score = 45.6 bits (108), Expect = 3e-05
Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 17/126 (13%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDP----------VTFTCQHRKTLEGH 346
L +V +G A S D V + D F C HR L+
Sbjct: 192 LKYQIRDVALLPKEQEG--YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDT 248
Query: 347 TLG--VAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDG 404
L V + +SP L D + WN++T EDS+ + + +
Sbjct: 249 NLAYPVNSIEFSPRHKF-LYTAGSDGI-ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306
Query: 405 TKFVCG 410
Sbjct: 307 LCLATS 312
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 103 bits (258), Expect = 9e-24
Identities = 56/303 (18%), Positives = 109/303 (35%), Gaps = 72/303 (23%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ ++ V+ C D K+ +G +D T+ IWD + T + ++ L GHT V
Sbjct: 124 QRIHCRSETSKGVY-C-LQYDDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSV- 176
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
L D + + G D + VW++ T E+L ++H +++ + + V
Sbjct: 177 -LCLQYDERVI-ITGSSDS-TVRVWDVNTGEMLNTLIHHC--EAVLHLRF--NNGMMVTC 229
Query: 411 GIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADT---H-HRIRTYNFEHLTD 465
S + + V W + + H + +F D
Sbjct: 230 -----------------SKDRSIAV---WDMASPTDITLRRVLVGHRAAVNVVDF----D 265
Query: 466 SNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS-CF 524
+ +S + D T + +W+ +R G +G I +
Sbjct: 266 DKYI------VSASGDRT------------IKVWNTSTCEFVRTLNGHKRG---IACLQY 304
Query: 525 GGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTV 584
V SGS D + +W ++ + L GH V C+ ++ + I S + D +
Sbjct: 305 RD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKI 358
Query: 585 RIW 587
++W
Sbjct: 359 KVW 361
Score = 72.7 bits (179), Expect = 9e-14
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQDFVASGSEDGKVYIWHVKRELPIAT 554
+ +WD R G T + + + +GS D V +W V + T
Sbjct: 155 IKIWDKNTLECKRILTGHTGS---VLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 555 LSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLASSLT 604
L H V + +N M+ + S D ++ +W + + L L
Sbjct: 209 LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVW--DMASPTDITLRRVLV 253
Score = 62.7 bits (153), Expect = 1e-10
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 29/107 (27%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVK-- 547
+ LWD+ LR +G H F + SG+ DGK+ +W +
Sbjct: 318 IRLWDIECGACLRVLEG--------HEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAA 366
Query: 548 -------RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
L + TL H+ V + ++ I S S D T+ IW
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIW 410
Score = 55.4 bits (134), Expect = 3e-08
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV-------DPVTFTCQHRKTLEGHT 347
+VL H + V +F D ++ +G+ D + +WD+ P C TL H+
Sbjct: 330 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--TLVEHS 385
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTS 397
V L + +V D + +W+ + + SP + T
Sbjct: 386 GRVFRLQF---DEFQIVSSSHD-DTILIWDFLNDPAAQAEPPRSPSRTYTY 432
Score = 55.4 bits (134), Expect = 3e-08
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
CE + LN H + + +GS D T+ +WD++ + LEGH V
Sbjct: 286 CEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELV 339
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET----------ELLRVKLNHSPEDSLTSCSW 400
+ + +V G D ++ VW++ LR + HS + +
Sbjct: 340 RCIRFDNK---RIVSGAYD-GKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF 393
Query: 401 NRDGTKFVCGG 411
D + V
Sbjct: 394 --DEFQIVSSS 402
Score = 53.5 bits (129), Expect = 1e-07
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ L +H V+ +F D ++ + S D T++IWD + + Y
Sbjct: 379 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL----NDPAAQAEPPRSPSRTYTY 432
Query: 355 WS 356
S
Sbjct: 433 IS 434
Score = 44.2 bits (105), Expect = 8e-05
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQ-FTIHS------CFGGANQDFVASGSEDGKVYIWHVKR 548
+ +WDL + R G + HS F + S S D + IW
Sbjct: 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWDFLN 414
Query: 549 ELPIATLSGHTRTVSCVAWN 568
+ + + + +
Sbjct: 415 DPAAQAEPPRSPSRTYTYIS 434
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 98.3 bits (245), Expect = 2e-22
Identities = 45/292 (15%), Positives = 81/292 (27%), Gaps = 42/292 (14%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ T VL F ++SP+ K A GS + + + + +
Sbjct: 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLT--------------- 396
L W P++ LL G D +V + + K S S
Sbjct: 151 SLDWHPNNV-LLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208
Query: 397 -SCSWNRDGTKFVCGG----IRGQFYQCDIEGQVLDSWEGVRVNCLWCRS-----DGKSV 446
+ ++ G G + Q + V+++ L RS + +
Sbjct: 209 HAVGFSPSGNALAYAGHDSSVT--IAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-I 265
Query: 447 LAA--DTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDR 504
+AA + + N + L SFT R
Sbjct: 266 VAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325
Query: 505 ILLRKFQGVTQGQ-FTIH-------SCFGGANQDF--VASGSEDGKVYIWHV 546
+ K + T+H + G + S DG+V +W +
Sbjct: 326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
Score = 91.7 bits (228), Expect = 4e-20
Identities = 42/341 (12%), Positives = 91/341 (26%), Gaps = 56/341 (16%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ + +DH V ++P ++ T S+D +++ P T + L
Sbjct: 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQTLVLLRLNRAAT 104
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETE----LLRVKLNHSPEDSLTSCSWNRDGTKF 407
++ WSP+ VG + V E E + + ++ S W+ +
Sbjct: 105 FVRWSPN-EDKFAVGSGA-RVISVCYFEQENDWWVSKHLKRPL-RSTILSLDWHPNNVLL 161
Query: 408 VCGG-----------IRGQFYQCDIEGQVLDSWEGVRV----NCLWCRS-----DGKSVL 447
G +R + + + W + G ++
Sbjct: 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA 221
Query: 448 AADTHHRIRTYNFEHLTDS-----NLLQEDHPVMS--FTIDAT-------DRLALLNVST 493
A + + P+ S + ++ LL +
Sbjct: 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281
Query: 494 QGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD--FVASGSEDGKVYIW--HVKRE 549
G D G ++ FT G ++ V+ + +
Sbjct: 282 SGWAHTRDLD-------AGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ 334
Query: 550 LPIATLSGHTRTVSCVAW---NPVYHQMIASVSDDCTVRIW 587
+ + H ++ + P S D V +W
Sbjct: 335 SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375
Score = 88.3 bits (219), Expect = 5e-19
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
T+QVL+ + F+ + T + V +++ D + T H V
Sbjct: 3 TSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR--TFSDHDKIVTC 60
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
+ W+P S+ +V +D +V+ + V L + + T W+ + KF
Sbjct: 61 VDWAPKSN-RIVTCSQD-RNAYVYEKRPDGTWKQTLVLLRLN--RAATFVRWSPNEDKFA 116
Query: 409 CG 410
G
Sbjct: 117 VG 118
Score = 80.6 bits (199), Expect = 2e-16
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 8/148 (5%)
Query: 284 CTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL 343
P T V FSP G LA D++V I + T+
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRD 403
+ L + L W+ +S+ +V + + + E+ + + +
Sbjct: 248 KLSQLPLRSLLWANESA--IVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNT 305
Query: 404 GTKFVCGG------IRGQFYQCDIEGQV 425
G G +R F D++G
Sbjct: 306 GEGREEEGPVSFTALRSTFRNMDLKGSS 333
Score = 65.9 bits (161), Expect = 9e-12
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 531 FVASGSEDGKVYIWHVK--RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ + +V ++ T S H + V+CV W P I + S D ++
Sbjct: 25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVY 82
Score = 52.1 bits (125), Expect = 2e-07
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 530 DFVASGSEDGKVYIWHVKRE----LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ +A D V I + + T+ + + W ++A+ + +
Sbjct: 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE-SAIVAAGYNYSPIL 276
Query: 586 IWG 588
+ G
Sbjct: 277 LQG 279
Score = 45.5 bits (108), Expect = 3e-05
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
L + A+N + + V ++
Sbjct: 6 VLHILPKPSYEHAFNS-QRTEFVTTTATNQVELY 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 96.8 bits (242), Expect = 4e-22
Identities = 53/301 (17%), Positives = 99/301 (32%), Gaps = 91/301 (30%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
TT+ H +V FS D ++ +GS+D T+ +W+ C++ E H+ V+
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVS 175
Query: 352 YLAWSPDSSHLLVV-GPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGTKFVC 409
+ +SP+SS+ ++V D + VWN+ L+ H+ L + + + DG+
Sbjct: 176 CVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCAS 232
Query: 410 GGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNL 468
G +G LW ++GK + D I F +
Sbjct: 233 G-----------------GKDGQAM---LWDLNEGKHLYTLDGGDIINALCFSP--NRYW 270
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGAN 528
L AT + +WDL +I++ + +
Sbjct: 271 L----------CAATGP---------SIKIWDLEGKIIVDELKQEVIST----------- 300
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH--QMIASVSDDCTVRI 586
+ + +AW+ Q + + D VR+
Sbjct: 301 -------------------------SSKAEPPQCTSLAWSA---DGQTLFAGYTDNLVRV 332
Query: 587 W 587
W
Sbjct: 333 W 333
Score = 80.2 bits (199), Expect = 1e-16
Identities = 54/317 (17%), Positives = 90/317 (28%), Gaps = 100/317 (31%)
Query: 283 LCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKT 342
L E + L H V S DG +GS D T+ +WD+ T +
Sbjct: 68 LTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT----TGTTTRR 123
Query: 343 LEGHTLGVAYLAWSPDSSHL------------------LVVGPEDCHELWV--------- 375
GHT V +A+S D+ + ++ H WV
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 376 ----------------WNIETELLRVKLN-HSPEDSLTSCSWNRDGTKFVCGGIRGQFYQ 418
WN+ L+ H+ L + + + DG+ G
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASG-------- 233
Query: 419 CDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMS 477
+G LW ++GK + D I F + L
Sbjct: 234 ---------GKDGQAM---LWDLNEGKHLYTLDGGDIINALCFSP--NRYWL-------- 271
Query: 478 FTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQ-FTIHS------CFGGANQD 530
AT + +WDL +I++ + + + A+
Sbjct: 272 --CAATGP---------SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW-SADGQ 319
Query: 531 FVASGSEDGKVYIWHVK 547
+ +G D V +W V
Sbjct: 320 TLFAGYTDNLVRVWQVT 336
Score = 72.9 bits (180), Expect = 4e-14
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 295 QVLNDHCDEVWFCKFSPD-GLKLATGSKDTTVIIWDVD-PVTFTCQHRKTLEGHTLGVAY 352
L H V +P + + S+D T+I+W + T ++ L GH+ V+
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFVCG 410
+ S D + G D L +W++ T R + H+ + S +++ D + V G
Sbjct: 92 VVISSDGQF-ALSGSWD-GTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSSDNRQIVSG 146
Score = 68.3 bits (168), Expect = 1e-12
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQDFVASGSEDGKVYIWHVK-RELPIA 553
+ LWDL R+F G T+ + S F ++ + SGS D + +W+
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKD---VLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 554 TLSGHTRTVSCVAWNPV-YHQMIASVSDDCTVRIW 587
H+ VSCV ++P + +I S D V++W
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 67.9 bits (167), Expect = 2e-12
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 5/105 (4%)
Query: 311 PDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDC 370
++G T ++ +T R TL+GH V +A +P +++ D
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRD- 60
Query: 371 HELWVWNIETELLRVKLNHSP----EDSLTSCSWNRDGTKFVCGG 411
+ +W + + + ++ + DG + G
Sbjct: 61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105
Score = 65.6 bits (161), Expect = 9e-12
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 531 FVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
F SGS DG + +W + GHT+ V VA++ ++ I S S D T+++W
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLW 155
Score = 64.8 bits (159), Expect = 2e-11
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS------CFGGANQDFVASGSEDGKVYIWHVKRE 549
+L+ + Q +G H+ D + S S D + +W + R+
Sbjct: 16 ENLYFQ----SMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD 71
Query: 550 -----LPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+P L GH+ VS V + Q S S D T+R+W
Sbjct: 72 ETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLW 113
Score = 63.7 bits (156), Expect = 4e-11
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 532 VASGSEDGKVYIWHVKRELP----IATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+SG + G ++ TL GH V+ +A P + MI S S D T+ +W
Sbjct: 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66
Score = 63.3 bits (155), Expect = 5e-11
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 529 QDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH--QMIASVSDDCTVRI 586
+ S D V +W++ GHT ++ V +P + AS D +
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP---DGSLCASGGKDGQAML 241
Query: 587 WGPHLNTNK 595
W LN K
Sbjct: 242 W--DLNEGK 248
Score = 30.6 bits (70), Expect = 1.6
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 572 HQMIASVSDDCTVRIW 587
H +S D T ++
Sbjct: 4 HHHHSSGVDLGTENLY 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 95.0 bits (237), Expect = 2e-21
Identities = 57/325 (17%), Positives = 102/325 (31%), Gaps = 88/325 (27%)
Query: 294 TQVLNDHCDEVW------FCKFSPDGLKLATGSKDTTVIIWDVD---PVTFTCQHRKTLE 344
+L H D V K + D L +GS+D TV+IW + + K L
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 345 GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRD 403
GH V+ LA S ++ + D L +W++ T + + H + S +++ D
Sbjct: 74 GHNHFVSDLALSQENCF-AISSSWD-KTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPD 129
Query: 404 GTKFVCGG----IR-----GQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHR 454
+ + G I+ G +C ++ V+C+ KS
Sbjct: 130 NRQILSAGAEREIKLWNILG---ECKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAP 185
Query: 455 IRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVT 514
S D + +W+ + + F+
Sbjct: 186 Y-------------------FASVGWDGR------------LKVWNTNFQ-IRYTFKA-- 211
Query: 515 QGQFTIHSCFGGANQDFVASG--SEDGK----------VYIWHVKRELPIATLSGHTRTV 562
H V S +GK + IW + T+
Sbjct: 212 ------HE-------SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI 258
Query: 563 SCVAWNPVYHQMIASVSDDCTVRIW 587
+ +A+NP Q +A +D V+I+
Sbjct: 259 NQIAFNPK-LQWVAVGTDQ-GVKIF 281
Score = 77.6 bits (192), Expect = 1e-15
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 19/132 (14%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
+ H V SP+G +ATG KD ++IWD+ + + +
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL----NLTYPQREFDAGSTI 258
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP------------EDSLTSC 398
+A++P + VG + + ++N+ T+ TS
Sbjct: 259 NQIAFNPKLQW-VAVGTDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315
Query: 399 SWNRDGTKFVCG 410
+WN G K G
Sbjct: 316 AWNALGKKLFAG 327
Score = 77.6 bits (192), Expect = 1e-15
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
T + H EV+ FSPD ++ + + + +W++ E H+ V+
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL--GECKFSSAEKENHSDWVS 166
Query: 352 YLAWSPDSSHLLVVGPEDCH--------ELWVWNIETELLRVKLNHSPEDSLTSCSWNRD 403
+ +SP V P + L VWN ++ H ++ S + +
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHE--SNVNHLSISPN 224
Query: 404 GTKFVCGG 411
G GG
Sbjct: 225 GKYIATGG 232
Score = 74.6 bits (184), Expect = 1e-14
Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 93/300 (31%)
Query: 320 SKDTTVIIWDVDPVTFTCQHRKTLEGHT---LGVAY---LAWSPDSSHLLVVGPEDCHEL 373
+ ++++ I V R LEGH+ + + DS L + G D +
Sbjct: 2 ADNSSLDIQVV--------KRGILEGHSDWVTSIVAGFSQKENEDSPVL-ISGSRD-KTV 51
Query: 374 WVWNIETELLRVKLN--------HSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQV 425
+W + E H+ ++ + +++ +
Sbjct: 52 MIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQENCFAISS--------------- 94
Query: 426 LDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFE-HLTDSNLLQEDHPVMS--FTID 481
SW+ +R LW D T + F H V S F+ D
Sbjct: 95 --SWDKTLR---LW---D------LRTGTTYKR--FVGH---------QSEVYSVAFSPD 129
Query: 482 ATDRLALLNVS-----TQGVHLWDL--RDRILLRKFQG----VTQGQF---TIHSCFGGA 527
++ S + LW++ + + + V+ ++ +
Sbjct: 130 NR-QIL----SAGAERE--IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182
Query: 528 NQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
+ AS DG++ +W+ ++ T H V+ ++ +P + IA+ D + IW
Sbjct: 183 FAPYFASVGWDGRLKVWNTNFQI-RYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIW 240
Score = 56.1 bits (136), Expect = 1e-08
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 496 VHLWDLRDRILLRKFQGVTQGQFTIHS-CFGGANQDFVASGSEDGKVYIWHVK------- 547
+ +WD+ + ++ TI+ F +VA G+ D V I+++
Sbjct: 237 LLIWDILNLTYPQREFDAGS---TINQIAFN-PKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
Query: 548 ------RELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
G + +AWN + + + + D +R +
Sbjct: 292 CTIEAEPITKAEGQKGKNPQCTSLAWNAL-GKKLFAGFTDGVIRTF 336
Score = 49.1 bits (118), Expect = 2e-06
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 282 HLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+CT E P + + ++ G KL G D + + +
Sbjct: 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 95.9 bits (239), Expect = 6e-21
Identities = 50/303 (16%), Positives = 101/303 (33%), Gaps = 83/303 (27%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH--RKTLEGHTLG 349
+T+ H +V FS D ++ + S+D T+ +W+ C++ + EGH
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN---TLGECKYTISEGGEGHRDW 519
Query: 350 VAYLAWSPDSSHLLVV-GPEDCHELWVWNIETELLRVKLN-HSPEDSLTSCSWNRDGTKF 407
V+ + +SP++ +V D + VWN+ LR L H+ +++ + + DG+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKT-VKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLC 576
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDS 466
G +G V LW ++GK + + + + I F +
Sbjct: 577 ASG-----------------GKDGVVL---LWDLAEGKKLYSLEANSVIHALCFSP--NR 614
Query: 467 NLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGG 526
L AT+ G+ +WDL + ++ + + +
Sbjct: 615 YWL----------CAATE---------HGIKIWDLESKSIVEDLKVDLKAE--------- 646
Query: 527 ANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYH--QMIASVSDDCTV 584
A + + W+ + S D +
Sbjct: 647 -----------------AEKADNSGPAATKRKVIYCTSLNWSA---DGSTLFSGYTDGVI 686
Query: 585 RIW 587
R+W
Sbjct: 687 RVW 689
Score = 82.4 bits (204), Expect = 1e-16
Identities = 50/311 (16%), Positives = 88/311 (28%), Gaps = 66/311 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ + + +LA + + + + + +
Sbjct: 287 DEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA-TMENAQ----KGEIMPNIPQMSAFWY 341
Query: 352 YLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ + ++ + N L+ + D +T+ + D +
Sbjct: 342 AVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSA 401
Query: 412 -----IR--GQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLAADTHHRIRTYNFEH 462
I G G V + SDG+ L+
Sbjct: 402 SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG------------- 448
Query: 463 LTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHS 522
S D RL WDL + R+F G T+ + S
Sbjct: 449 ---SW-------------DGELRL------------WDLAAGVSTRRFVGHTKD---VLS 477
Query: 523 -CFGGANQDFVASGSEDGKVYIWHVKRELPIATLS----GHTRTVSCVAWNPV-YHQMIA 576
F N+ + S S D + +W+ E T+S GH VSCV ++P I
Sbjct: 478 VAFSLDNR-QIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 577 SVSDDCTVRIW 587
S S D TV++W
Sbjct: 536 SASWDKTVKVW 546
Score = 79.0 bits (195), Expect = 2e-15
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 7/132 (5%)
Query: 282 HLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLK-LATGSKDTTVIIWDVDPV-TFTCQH 339
T + H D V D + + S+D ++I+W +
Sbjct: 363 AAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA 422
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSC 398
++ L GH+ V + S D + G D EL +W++ R + H+ + S
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQF-ALSGSWD-GELRLWDLAAGVSTRRFVGHT--KDVLSV 478
Query: 399 SWNRDGTKFVCG 410
+++ D + V
Sbjct: 479 AFSLDNRQIVSA 490
Score = 77.0 bits (190), Expect = 7e-15
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
C+ L H V SPDG A+G KD V++WD+ + +LE ++ +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA----EGKKLYSLEANS-VI 605
Query: 351 AYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSP-----------------E 392
L +SP+ + L E + +W++E+ ++
Sbjct: 606 HALCFSPN-RYWLCAATEHG--IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662
Query: 393 DSLTSCSWNRDGTKFVCG 410
TS +W+ DG+ G
Sbjct: 663 IYCTSLNWSADGSTLFSG 680
Score = 75.1 bits (185), Expect = 3e-14
Identities = 39/293 (13%), Positives = 82/293 (27%), Gaps = 74/293 (25%)
Query: 313 GLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE 372
+ S + + ++ T + + + + +A L P
Sbjct: 263 SAGINAASPNKELAKEFLENYLLTDEGLEAV-NKDKPLGAVALKSYEEEL-AKDPRI--A 318
Query: 373 LWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGV 432
+ N + + + ++
Sbjct: 319 ATMENAQKG------------------------------------EIMPNIPQMSAFWYA 342
Query: 433 RVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLN 490
+ + G+ + A + + V + ID D +
Sbjct: 343 VRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIV--- 399
Query: 491 VS-----TQGVHLWDLRDR-----ILLRKFQGVTQGQFTIHS------CFGGANQDFVAS 534
S + + LW L + R+ G HS ++ F S
Sbjct: 400 -SASRDKS--IILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLS-SDGQFALS 447
Query: 535 GSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
GS DG++ +W + + GHT+ V VA++ ++ I S S D T+++W
Sbjct: 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLW 499
Score = 48.1 bits (115), Expect = 8e-06
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 278 LLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV 330
L VD E+ +S DG L +G D + +W +
Sbjct: 639 LKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 93.3 bits (232), Expect = 2e-20
Identities = 36/296 (12%), Positives = 86/296 (29%), Gaps = 43/296 (14%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
+ + + + D + + H V + P ++ ++
Sbjct: 85 IASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVI 144
Query: 364 VVGPEDCHELWVWNIETELLRVKLNHSPEDSLT---------SCSWNRDGTKFVCGGIRG 414
++ V++ + + + + L SWN + ++
Sbjct: 145 ATKTPSS-DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA--- 200
Query: 415 QFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHP 474
+ + CLW D + + H
Sbjct: 201 -----SDDHTI----------CLW---DINATPKEHRVIDAKNIFTGH---------TAV 233
Query: 475 VMSFTIDATDRLALLNVSTQG-VHLWDLRDRILLRKFQGVTQGQFTIHSC-FGGANQDFV 532
V +V+ + +WD R+ + V ++ F ++ +
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 533 ASGSEDGKVYIWHVKR-ELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
A+GS D V +W ++ +L + + H + V W+P ++AS D + +W
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 74.4 bits (183), Expect = 2e-14
Identities = 50/299 (16%), Positives = 91/299 (30%), Gaps = 70/299 (23%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLK-LATGSKDTTVIIWDVD---PVTFTCQHRKTLEGH 346
C+ L H E + ++P+ L + S D T+ +WD++ + GH
Sbjct: 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230
Query: 347 TLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSPEDSLTSCSWNR 402
T V +AW L +D L +W+ + H+ + S+N
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNP 287
Query: 403 DGTKFVCGGIRGQFYQCDIEGQVLDSWEG-VRVNCLWCRSDGKSVLAADTHHRIRTYNFE 461
+ G S + V LW + K L + H+
Sbjct: 288 YSEFILATG----------------SADKTVA---LWDLRNLKLKLHSFESHK------- 321
Query: 462 HLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLR----DRILLRKFQGVTQG 516
+ + L + T +H+WDL ++ G +
Sbjct: 322 -----------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 517 QFTI--HS------CFGGANQDFVASGSEDGKVYIWHVKR--------ELPIATLSGHT 559
F H+ + + S SED + +W + E+P + L +T
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNT 429
Score = 67.5 bits (165), Expect = 5e-12
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 7/123 (5%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKL-ATGSKDTTVIIWDVDPVTFTCQHRKTL 343
KE + + H V + L + + D ++IWD T + T+
Sbjct: 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTV 273
Query: 344 EGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET--ELLRVKLNHSPEDSLTSCSWN 401
+ HT V L+++P S +L G D + +W++ L +H D + W+
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSAD-KTVALWDLRNLKLKLHSFESHK--DEIFQVQWS 330
Query: 402 RDG 404
Sbjct: 331 PHN 333
Score = 33.2 bits (76), Expect = 0.24
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 287 EEFPCETTQVLNDHCDEVWFCKFSPDG-LKLATGSKDTTVIIWDV 330
E+ P E + H ++ ++P+ + + S+D + +W +
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 90.9 bits (225), Expect = 6e-20
Identities = 34/326 (10%), Positives = 97/326 (29%), Gaps = 52/326 (15%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWS 356
N + V +F+ D L + + I++V PV + ++ +
Sbjct: 15 ENHVSNPVTDYEFNQDQSCLILST-LKSFEIYNVHPV------AHIMSQEMRHLSKVRML 67
Query: 357 PDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQF 416
++++ V + +W+ + ++ + +R+
Sbjct: 68 HRTNYVAFVTGVK-EVVHIWDDVKKQDVSRIKVD--APVKDLFLSREFIVVSY---GDVI 121
Query: 417 YQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLT--------DSNL 468
+ +R + +L + + L D +
Sbjct: 122 SVFKFGNPWKRITDDIRFGGVCE--FSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGV 179
Query: 469 LQEDHPVMSFTIDA-TDRLALLNVSTQG------------VHLWDLRDRILLRKFQ-GVT 514
Q+ I A T+ + ++ ++ + + ++ D +L+R+F+ G+
Sbjct: 180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD 239
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIA--------TLSGHTRTVSCVA 566
+ + + +A S+ ++++ + + + S
Sbjct: 240 RAD--VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297
Query: 567 WNP-----VYHQMIASVSDDCTVRIW 587
+ V IA +S+ V +W
Sbjct: 298 FKLSVDKHVRGCKIAWISESSLVVVW 323
Score = 70.4 bits (172), Expect = 3e-13
Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 40/285 (14%)
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWN 401
+ V ++ D S L++ ++N+ + + S
Sbjct: 14 PENHVSNPVTDYEFNQDQS-CLILSTLKS--FEIYNVHP-VAHIMSQEMRHLSKVRMLHR 69
Query: 402 RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSV------LAADTHHRI 455
+ FV G + D + V+ + + K + + I
Sbjct: 70 TNYVAFVTGVKEVVH--------IWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVI 121
Query: 456 RTYNFE-----HLTDSN----------LLQEDHPVMSFTIDATDRLALLNVSTQGVHLWD 500
+ F D LL + I T + + +TQ +
Sbjct: 122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181
Query: 501 LRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDG-KVYIWHVKRELPIATLSGHT 559
+ T + D VA+ S+DG + ++ + + +
Sbjct: 182 KAILGKGVLIKAHTNPIKMVRLNRKS---DMVATCSQDGTIIRVFKTEDGVLVREFRRGL 238
Query: 560 R--TVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLASS 602
V + W+ +A VSD T+ ++ + + H
Sbjct: 239 DRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282
Score = 62.7 bits (152), Expect = 9e-11
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVI-IWDVDPVTFTCQHRKTLEGHT--L 348
++ H + + + + +AT S+D T+I ++ T +
Sbjct: 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK----TEDGVLVREFRRGLDRA 241
Query: 349 GVAYLAWSPDSSHLLVVGPEDCHELWVWNIETE 381
V + WS D S L VV D L V+ I +
Sbjct: 242 DVVDMKWSTDGSKLAVVS--DKWTLHVFEIFND 272
Score = 43.5 bits (102), Expect = 1e-04
Identities = 41/319 (12%), Positives = 81/319 (25%), Gaps = 51/319 (15%)
Query: 294 TQVLNDHCDEVWFCKFSPDG-LKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+++ + + V IWD Q ++ V
Sbjct: 51 AHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV----KKQDVSRIKVDA-PVKD 105
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWN----IETELLRVKLNHSPEDSLT-SCSWNRDGTKF 407
L S + ++V + N I ++ + L S +N
Sbjct: 106 LFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163
Query: 408 VCGGIRGQFYQCDIEGQVLDSWEGVR--------VNCLWCRSDGKSV-LAADTHHRIRTY 458
G D Q + + V + IR +
Sbjct: 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223
Query: 459 NFEHLTDSNLLQE----DHPV----MSFTIDATDRLALLNVSTQG-VHLWDLRDR----- 504
D L++E M ++ D + L VS + +H++++ +
Sbjct: 224 K---TEDGVLVREFRRGLDRADVVDMKWSTDGS---KLAVVSDKWTLHVFEIFNDQDNKR 277
Query: 505 ------ILLRKFQGVT-QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLS- 556
I ++ FQ F + +A SE V +W R + +
Sbjct: 278 HALKGWINMKYFQSEWSLCNFKLSVDKH-VRGCKIAWISESSLVVVWPHTRMIETFKVVF 336
Query: 557 GHTRTVSCVAWNPVYHQMI 575
+ + MI
Sbjct: 337 DDEMERWLIQMDQREQLMI 355
Score = 36.5 bits (84), Expect = 0.018
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 551 PIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
PI + + V+ +N + + + I+
Sbjct: 11 PIVPENHVSNPVTDYEFNQD-QSCLILSTLK-SFEIY 45
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 86.7 bits (215), Expect = 2e-18
Identities = 29/318 (9%), Positives = 75/318 (23%), Gaps = 85/318 (26%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
T H +++ + S D + +WD + + ++ V
Sbjct: 8 TANAGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLD---NENPKDKSYSHFV-- 60
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
H+ + H + +
Sbjct: 61 ------------------HKSGL-------------HHVDVLQAIERDAFELCLVATTSF 89
Query: 413 RGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
G + + + H + D
Sbjct: 90 SG-------DLLFYRITREDETKKVIFEKLDLL-DSDMKKHSFWALKWGASNDR---LLS 138
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLR-----DRILLRKFQGVTQGQFTIHSCFGGA 527
H +++ + T ++W L + + Q T+ S +
Sbjct: 139 HRLVATDVKGT------------TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186
Query: 528 NQ----DF-----VASGSEDGKVYIW------HVKRELPIATLSGHTRTVSCVAWNPVYH 572
D +A+G +G V I + ++ ++ ++ V ++P
Sbjct: 187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ-G 245
Query: 573 QMIASVSDDCT---VRIW 587
++A D + + ++
Sbjct: 246 SLLAIAHDSNSFGCITLY 263
Score = 79.0 bits (195), Expect = 7e-16
Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 72/332 (21%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVA 351
+ + V FS D L +D T + ++ H+
Sbjct: 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK----LDLLDSDMKKHSFWAL 127
Query: 352 YLAWSPD--SSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVC 409
S D SH LV ++W + E + + +W+
Sbjct: 128 KWGASNDRLLSHRLVATDVKGT-TYIWKFHP--------FADESNSLTLNWSPTLEL--- 175
Query: 410 GGIRGQFYQCDIEGQVLDSWEG--VRVNCLWCRSDGKSVLA------------ADTHHRI 455
++S + G +A T +
Sbjct: 176 -------------QGTVESPMTPSQFATSVDISERGL--IATGFNNGTVQISELSTLRPL 220
Query: 456 RTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLAL--LNVSTQGVHLWDLRDRILLRKFQ 511
+ +H ++ + + S F+ + LA+ + S + L++ +
Sbjct: 221 YNFESQHS----MINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLS 275
Query: 512 GVTQGQFTIHSCFGGANQ----------DFVASGSEDGKVYIWHVKRELPIATLSGHTRT 561
T F ++ + + S DGK+ W VK + I TL+ H
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335
Query: 562 V----SCVAWNPVYHQMIASVS-DDCTVRIWG 588
+ +A + +A D G
Sbjct: 336 IEIEEDILAVDEH-GDSLAEPGVFDVKFLKKG 366
Score = 70.2 bits (172), Expect = 4e-13
Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 16/126 (12%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
+ + + H V F+ G L + D + WDV T + TL
Sbjct: 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK----TKERITTLN 330
Query: 345 GHTLGVAY----LAWSPDSSHLLVVGPED-CHELWVWNIETELLRVKLNHSPEDSLTSCS 399
H + LA L G D W +SL
Sbjct: 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM-------GADLNESLCCVC 383
Query: 400 WNRDGT 405
+R
Sbjct: 384 LDRSIR 389
Score = 67.8 bits (166), Expect = 3e-12
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 286 KEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTT---VIIWDVD---------PV 333
+ + E+ + ++ + + KFSP G LA + + +++ +
Sbjct: 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277
Query: 334 TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSP- 391
T + Q H+ V L+++ L D +L W+++T E + H
Sbjct: 278 THSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWD-GKLRFWDVKTKERITTLNMHCDD 335
Query: 392 -EDSLTSCSWNRDGTKFVCGGI 412
E + + G G+
Sbjct: 336 IEIEEDILAVDEHGDSLAEPGV 357
Score = 59.8 bits (145), Expect = 9e-10
Identities = 34/326 (10%), Positives = 74/326 (22%), Gaps = 78/326 (23%)
Query: 292 ETTQVLNDHCDEVWFCKFSPDGLK---LATGSKDTTVIIWDV--------------DPVT 334
+ H S D L L T IW P
Sbjct: 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173
Query: 335 FTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSP-- 391
++ + + S L+ G + + + + T L +
Sbjct: 174 ELQGTVESPMTPSQFATSVDISERG--LIATGFNN-GTVQISELSTLRPLYNFESQHSMI 230
Query: 392 --EDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAA 449
+S+ S ++ G+ +S+ + L+ G+ +
Sbjct: 231 NNSNSIRSVKFSPQGSLLAIAH-------DS------NSFGCIT---LYETEFGERI--- 271
Query: 450 DTHHRIRTYNFEHLTDSNLLQEDHPVMS--FTIDATDRLALLNVS-----TQGVHLWDLR 502
+ VMS F L S + WD++
Sbjct: 272 ---GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLC----SAGWDGK--LRFWDVK 321
Query: 503 DRILLRKFQGVTQG-QFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRT 561
+ + + + D +A ++ R +
Sbjct: 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR---SGMGADL--- 375
Query: 562 VSCVAWNPVYHQMIASVSDDCTVRIW 587
++ + V D ++R +
Sbjct: 376 ----------NESLCCVCLDRSIRWF 391
Score = 48.6 bits (116), Expect = 3e-06
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 539 GKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
KV+I H + V+ S S D +++W
Sbjct: 2 SKVFIATAN------AGKAHDADIFSVSACN---SFTVSCSGDGYLKVW 41
Score = 44.7 bits (106), Expect = 6e-05
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 26/93 (27%)
Query: 530 DFVASGSEDGKVYIW-------------------------HVKRELPIATLSGHTRTVSC 564
F S S DG + +W HV I + V+
Sbjct: 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86
Query: 565 VAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSP 597
+++ +D T ++ L+ S
Sbjct: 87 TSFSG-DLLFYRITREDETKKVIFEKLDLLDSD 118
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 86.1 bits (212), Expect = 7e-18
Identities = 31/298 (10%), Positives = 74/298 (24%), Gaps = 57/298 (19%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSS-------- 360
+ + + I+ ++ T C +T+ V L W
Sbjct: 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCL 228
Query: 361 ---------HLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG 411
+ L + E L + L S + S VCG
Sbjct: 229 SFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTT----VVCGF 284
Query: 412 IRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQE 471
G + D+ + S I + + + +
Sbjct: 285 KNGFVAEFDLT-----------------DPEVPSFYDQVHDSYILSVSTAYSDFED---- 323
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDF 531
V + +D ++++ +D + +G + + +
Sbjct: 324 -TVVSTVAVDGY------------FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370
Query: 532 VASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGP 589
+ + + + L T++ + + H M+ + S D ++ I
Sbjct: 371 I-YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIITNA 426
Score = 71.8 bits (175), Expect = 2e-13
Identities = 43/349 (12%), Positives = 101/349 (28%), Gaps = 34/349 (9%)
Query: 277 SLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLK------LATGSKDTTVIIWDV 330
S + C Q + EVW K+ L+ S++ T+ ++
Sbjct: 183 SCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI 242
Query: 331 DP-------VTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETE-- 381
+ TL + S +V G ++ + +++
Sbjct: 243 IDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLSPTTVVCGFKNGF-VAEFDLTDPEV 299
Query: 382 -LLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCR 440
+++ S S+++ + + T + G FY + + R
Sbjct: 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359
Query: 441 S-----DGKSVLAADTHHRIRTYN-FEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQ 494
S + +D +R L+ + + + + + +L S
Sbjct: 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSAD 418
Query: 495 G-VHLWDLRDRIL-LRKFQGVTQGQFTIHSC-FGGANQDFVASGSEDGKVYIWHVKRELP 551
G + + + R+L K TQ + + + + S + ++
Sbjct: 419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTV---NDVS 475
Query: 552 IATLSGHTRTVSCVAWNP--VYHQMIASVSDDCTVRIWGPHLNTNKSPH 598
A + H ++C WN + A + + + L + H
Sbjct: 476 KAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHHHHHH 524
Score = 62.6 bits (151), Expect = 2e-10
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 5/163 (3%)
Query: 441 SDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLW 499
+G + + F+ +L + T D ++ G V +
Sbjct: 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF 292
Query: 500 DLRD-RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGH 558
DL D + Q ++ + + V++ + DG YI++ K T
Sbjct: 293 DLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352
Query: 559 TRTVSC--VAWNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHL 599
R + V + P + I S ++R P +
Sbjct: 353 FRGSNLVPVVYCPQIYSYIYSDGAS-SLRAVPSRAAFAVHPLV 394
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 86.1 bits (212), Expect = 1e-17
Identities = 41/310 (13%), Positives = 83/310 (26%), Gaps = 58/310 (18%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
F LA + V I+ V + + + + +L+V+ +
Sbjct: 25 FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-----DRSAIKEMRFVKG-IYLVVINAK 78
Query: 369 DCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDS 428
D ++V ++ ++ + + +TS + + G G DI+ D
Sbjct: 79 DT--VYVLSLYSQKVLTTVFV--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDR---DQ 131
Query: 429 WEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLAL 488
+++ L KS P++S + D +
Sbjct: 132 LSSFKLDNLQ-----KSSFFPAARL-------------------SPIVSIQWNPRDIGTV 167
Query: 489 LNVSTQGVHLWDLRDRILLRKFQGV---------------TQGQFTIHSCFGGANQDFVA 533
L + L + + + F + + N +
Sbjct: 168 LISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII 227
Query: 534 SGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNT 593
+ ED + W I RTV N I S + +I +
Sbjct: 228 TIHEDNSLVFWDANSGHMIM-----ARTVFETEINVPQPDYIRDSSTNAA-KISKVYWMC 281
Query: 594 NKSPHLASSL 603
+P S L
Sbjct: 282 ENNPEYTSLL 291
Score = 64.5 bits (156), Expect = 6e-11
Identities = 26/317 (8%), Positives = 83/317 (26%), Gaps = 43/317 (13%)
Query: 302 DEVWFCKFSPDGLKLATGSKDTTVIIWDVD-------PVTFTCQHRKTLEGHTLGVAYLA 354
++ + G ++ ++I++D+D + + + +
Sbjct: 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158
Query: 355 WSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP----------------EDSLTSC 398
W+P +++ E + +E E+ + + P +
Sbjct: 159 WNPRDIGTVLISYEYVTLTY-SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIE-GQVLDSWEG----VRVNCLWCRSDGKSVLAADTHH 453
++ + + D G ++ + + V D + A +
Sbjct: 218 LYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKV 277
Query: 454 RIRTYNFEHLT------DSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILL 507
N T S ++ + + T R ++ + + + + +
Sbjct: 278 YWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337
Query: 508 RKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAW 567
I + Q +G + + + + L +
Sbjct: 338 -----PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML---YPSGIFTDK 389
Query: 568 NPVYHQMIASVSDDCTV 584
++ Q ++ + T
Sbjct: 390 ASLFPQNLSWLRPLATT 406
Score = 61.0 bits (147), Expect = 7e-10
Identities = 38/336 (11%), Positives = 93/336 (27%), Gaps = 46/336 (13%)
Query: 299 DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY------ 352
+V + P+ L + T +D +++ WD + + +T+ + V
Sbjct: 209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN--SGHMIMARTVFETEINVPQPDYIRD 266
Query: 353 ----------LAW----SPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSC 398
+ W +P+ + LL+ L + L ++P S+TS
Sbjct: 267 SSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS-----LTMIDLGYTPRYSITSY 321
Query: 399 SWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCR-SDGKSVLAADTHHRIRT 457
+ + + + +++ R + + + +L + I T
Sbjct: 322 E---GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378
Query: 458 YNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQ 517
+ ++ +S+ +V + + +G G
Sbjct: 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKG---GV 435
Query: 518 FTIHSCFGGANQDFVASGSEDGKVYIW-----------HVKRELPIATLSGHTRTVSCVA 566
T +G +G V I+ + L V ++
Sbjct: 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495
Query: 567 WNPVYHQMIASVSDDCTVRIWGPHLNTNKSPHLASS 602
+ +A + V ++ +N S
Sbjct: 496 FAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530
Score = 61.0 bits (147), Expect = 7e-10
Identities = 39/324 (12%), Positives = 88/324 (27%), Gaps = 39/324 (12%)
Query: 296 VLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHR--------------- 340
+ +++P + S + + + + V +
Sbjct: 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSL--VENEIKQSFIYELPPFAPGGDFS 203
Query: 341 -KTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
KT E T V + P+S H ++ ED + L W+ + + + +
Sbjct: 204 EKTNEKRTPKVIQSLYHPNSLH-IITIHED-NSLVFWDANSGHMIMARTVFETEINVPQP 261
Query: 400 WNRDGTKFVCGGIRGQFYQCD------IEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHH 453
+ I ++ C+ S L G + + T +
Sbjct: 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY 321
Query: 454 RIRTYNFEHLTDSNL--LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQ 511
+ + + L + P+++ G+ L L + +
Sbjct: 322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381
Query: 512 GVTQGQFTIHS-------CFGGANQDFVASGSEDGKVYIWHV-KRELPIATLSGHTRTVS 563
G FT + + + S K+++ + + L G RT
Sbjct: 382 --PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439
Query: 564 CVAWNPVYHQMIASVSDDCTVRIW 587
Y + + +VRI+
Sbjct: 440 QKLPAE-YGTAFITGHSNGSVRIY 462
Score = 52.2 bits (124), Expect = 4e-07
Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 22/250 (8%)
Query: 299 DHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPD 358
+ + +F L + TV + + + + T+ + +
Sbjct: 56 EDRSAIKEMRFVKGI-YLVVINAKDTVYVLSLY----SQKVLTTVFVPG-KITSIDTDAS 109
Query: 359 SSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQ 418
+++G ++ + V++I+ + L + + I +
Sbjct: 110 LDW-MLIGLQN-GSMIVYDIDR-------DQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160
Query: 419 CDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSF 478
G VL S+E V + + + + + + +N + V+
Sbjct: 161 PRDIGTVLISYEYVTL--TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK-VIQS 217
Query: 479 TIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSED 538
+ + WD ++ T + I+ +D + ++
Sbjct: 218 LYHPNSLHIITIHEDNSLVFWDANSGHMI---MARTVFETEINVPQPDYIRDSSTNAAKI 274
Query: 539 GKVYIWHVKR 548
KVY W +
Sbjct: 275 SKVY-WMCEN 283
Score = 46.8 bits (110), Expect = 2e-05
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDV------DPVTFTCQHRKTLE-GHTLG 349
L + G TG + +V I+D D +F +TL L
Sbjct: 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA 490
Query: 350 VAYLAWSPDSSHLLVVGPEDCH-ELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
V ++++ ++ L V E L+ + + S + + ++ + T V
Sbjct: 491 VDKISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549
Query: 409 CGGIR 413
+R
Sbjct: 550 LVDVR 554
Score = 36.8 bits (84), Expect = 0.021
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 557 GHTRTVSCVAWNPVYHQMIASVSDDCTVRIWG 588
G + A++ ++A + V I+G
Sbjct: 15 GMSSKPIAAAFDFT-QNLLAIATVTGEVHIYG 45
Score = 36.4 bits (83), Expect = 0.034
Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 281 DHLCTKEEFPCETTQVLNDHCD-EVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQH 339
+ F ++ LN + V F+ + L+LA + V+++ + F
Sbjct: 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
+ G +++ +LV D + + + H+ + ++ +
Sbjct: 527 NRPESGDLEMNFRRFSLNNTNGVLV----DVRDRAPTGVRQGFMPSTAVHANKGKTSAIN 582
Query: 400 WNRDGTKFVC-GGIRGQFYQCDIEG------QVLDSWEGVRVNCLWCRSDGKSVLAADTH 452
+ G FV G D G + + G + C+ C D +
Sbjct: 583 NSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY 640
Query: 453 HRIR 456
I
Sbjct: 641 SSIL 644
Score = 32.5 bits (73), Expect = 0.53
Identities = 29/288 (10%), Positives = 74/288 (25%), Gaps = 54/288 (18%)
Query: 310 SPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPED 369
P S + + + L+G + + + G +
Sbjct: 401 RPLATTSMAASVPNKLWLGALSAAQ---NKDYLLKGGVRTKRQKLPAEYGT-AFITGHSN 456
Query: 370 CHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSW 429
+ +++ ++ ++ ++ + L+
Sbjct: 457 GS-VRIYDASHGDIQ----------------------------DNASFEVNL-SRTLNKA 486
Query: 430 EGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALL 489
+ + V+ + ++ + + + + +E + D
Sbjct: 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ-----FYSVENRPESGDLEMNFRRF 541
Query: 490 NVSTQGVHLWDLRDRILLRKFQG------VTQGQFTIHSCFGGANQD--FVASGSEDGKV 541
+++ L D+RDR QG V + + N + FV G +
Sbjct: 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI---NNSNIGFVGIAYAAGSL 598
Query: 542 YIWHVKRELPIATLSGHTRTVSCV--AWNPVYHQMIASVSDDCTVRIW 587
+ + P + R +S A +I DD I
Sbjct: 599 MLIDRRG--PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 76.5 bits (187), Expect = 5e-15
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 22/174 (12%)
Query: 299 DHCDEVWFCKFSPDGLKLA----TGSKDTTVIIWDVD-------PVTFTCQHRKTLEGHT 347
+ S D L L+ + + + +DV + K L+
Sbjct: 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG 149
Query: 348 LGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKF 407
V + W+P ++ V D + V + TE ++V ++TS W+ G +
Sbjct: 150 GMVIDMKWNPTVPSMVAVCLAD-GSIAVLQV-TETVKVCATLPSTVAVTSVCWSPKGKQL 207
Query: 408 VCGGIRGQFYQCDIEGQV---------LDSWEGVRVNCLWCRSDGKSVLAADTH 452
G G Q Q +S VRV + +
Sbjct: 208 AVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261
Score = 56.8 bits (136), Expect = 8e-09
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 17/175 (9%)
Query: 434 VNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVST 493
+ ++ D ++I L ++ ++ + D L+ +S+
Sbjct: 59 LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP---MKFPIHHLALSCD-NLTLSACMMSS 114
Query: 494 QG---VHLWDLRD---------RILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKV 541
+ + +D+R R G I + VA DG +
Sbjct: 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174
Query: 542 YIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLNTNKS 596
+ V + + T V+ V W+P Q +A + TV + P L K
Sbjct: 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTLQEKKV 228
Score = 51.1 bits (121), Expect = 7e-07
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTL--EGHTLGVAY 352
V +SP G +LA G ++ TV+ + H + V
Sbjct: 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLD 245
Query: 353 LAWSPDSSHLLVVGPED 369
+ W +V D
Sbjct: 246 VLWIGTYVFAIVYAAAD 262
Score = 47.6 bits (112), Expect = 9e-06
Identities = 35/234 (14%), Positives = 62/234 (26%), Gaps = 23/234 (9%)
Query: 285 TKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE 344
+ EE P E + +L GL++ DP + + L
Sbjct: 30 SPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV 89
Query: 345 GHTLGVAYLAWSPDSSHLLV--VGPEDCHELWVWNIET----------ELLRVKLNHSPE 392
+ +LA S D+ L + E + +++ T KL
Sbjct: 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG 149
Query: 393 DSLTSCSWNRDGTK-FVCGGIRGQFYQCDIEGQVLDSWE---GVRVNCLWCRSDGKSVLA 448
+ WN G + V V V + GK +
Sbjct: 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV 209
Query: 449 ADTHHRIRTYNFE-----HLTDSNLLQEDHP--VMSFTIDATDRLALLNVSTQG 495
+ + Y + + DHP V+ T A++ + G
Sbjct: 210 GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 72.1 bits (176), Expect = 1e-13
Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 61/349 (17%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK-------TLEGHTLGVAY 352
D + +F+ G LATG K V+I+ + H + T + H Y
Sbjct: 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY 86
Query: 353 L------------AWSPDSSHLLVVGPEDCHELWVWNIETELLRVK-LNHSPEDSLTSCS 399
L W P + + + + +W I R + N ED
Sbjct: 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP 146
Query: 400 WNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAA--------DT 451
+ + ++ + +N + SD ++ L+A
Sbjct: 147 TTVTTLRVPVFRPMDLMVEASPR-RIFANAHTYHINSISINSDYETYLSADDLRINLWHL 205
Query: 452 HHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG-VHLWDLRD------- 503
R++N + +N+ + + + + S++G + L D+R
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265
Query: 504 -RILLRKFQGVTQGQFTIHSCFGGA-----NQDFVASGSEDGKVYIWHVKRE-LPIATLS 556
++ + F+ + ++ + V +W + E P+ T
Sbjct: 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-YLSVKVWDLNMENRPVETYQ 324
Query: 557 GHTRTVSC---------------VAWNPVYHQMIASVSDDCTVRIWGPH 590
H S WN ++ + S + R++ +
Sbjct: 325 VHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRN 372
Score = 58.2 bits (140), Expect = 4e-09
Identities = 25/214 (11%), Positives = 58/214 (27%), Gaps = 20/214 (9%)
Query: 374 WVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVR 433
W V + + D +++ +N G G G+ E +
Sbjct: 10 IQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG 69
Query: 434 VNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVST 493
++ H Y + + + + + LL+ +
Sbjct: 70 EYNVYSTFQS--------HEPEFDYLKSLEIEEKINK-----IRWLPQKNAAQFLLSTND 116
Query: 494 QGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIA 553
+ + LW + +R + + + D V +
Sbjct: 117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN-- 174
Query: 554 TLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIW 587
HT ++ ++ N Y + S +DD + +W
Sbjct: 175 ---AHTYHINSISINSDY-ETYLS-ADDLRINLW 203
Score = 55.2 bits (132), Expect = 3e-08
Identities = 40/304 (13%), Positives = 79/304 (25%), Gaps = 62/304 (20%)
Query: 297 LNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVD----PVTFTCQHRKTLEGHTLGVAY 352
N H + + D + + D + +W ++ +E T +
Sbjct: 173 ANAHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
+ P+S + V + + D S +R F
Sbjct: 232 AEFHPNSCNTFVYSSSK-GTIRLC----------------DMRASALCDRHSKLFEEPE- 273
Query: 413 RGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQED 472
D + S ++ + G+ ++ D Y + D N E+
Sbjct: 274 -------DPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------YLSVKVWDLN--MEN 317
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFV 532
PV ++ + R L L + F C + V
Sbjct: 318 RPVETYQVHEYLR----------SKLCSLYE----------NDCIFDKFECCWNGSDSVV 357
Query: 533 ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLN 592
+GS + ++ + I + P ++ AS I L+
Sbjct: 358 MTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP--RKVCASGKRK-KDEISVDSLD 414
Query: 593 TNKS 596
NK
Sbjct: 415 FNKK 418
Score = 55.2 bits (132), Expect = 3e-08
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 27/167 (16%)
Query: 295 QVLNDHCDEVWFCKFSP-DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLE--------- 344
+ + + + +F P S T+ + D+ +H K E
Sbjct: 220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRS 279
Query: 345 ---GHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSPEDS------- 394
++ + +S +++ +W N+E + H S
Sbjct: 280 FFSEIISSISDVKFSHSGRYMMTRDYLSVK-VWDLNMENRPVETYQVHEYLRSKLCSLYE 338
Query: 395 ------LTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVN 435
C WN + + G F D + + E R N
Sbjct: 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASREN 385
Score = 44.4 bits (104), Expect = 7e-05
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDP---VTFTCQHRKTLEGHT 347
++ + KFS G + T +V +WD++ T Q + L
Sbjct: 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRD-YLSVKVWDLNMENRPVETYQVHEYLRSKL 333
Query: 348 LGVAY---------LAWSPDSSHLLVVGPEDCHELWVWNIET 380
+ W+ S ++ G + +++ T
Sbjct: 334 CSLYENDCIFDKFECCWNGSDSV-VMTGSYNNF-FRMFDRNT 373
Score = 41.7 bits (97), Expect = 6e-04
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 16/136 (11%)
Query: 267 TKVDESLENVSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVI 326
+ E+ + L LC+ E ND + + C ++ + TGS +
Sbjct: 317 NRPVETYQVHEYLRSKLCSLYE---------NDCIFDKFECCWNGSDSVVMTGSYNNFFR 367
Query: 327 IWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVK 386
++D T + P G E+ V +++ +
Sbjct: 368 MFDR----NTKRDITLEASRENNKPRTVLKPRKV--CASGKRKKDEISVDSLDFNKKILH 421
Query: 387 LNHSP-EDSLTSCSWN 401
P E+ + + N
Sbjct: 422 TAWHPKENIIAVATTN 437
Score = 35.5 bits (81), Expect = 0.052
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 533 ASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHLN 592
A G D + VK + +S V +N +++A+ V I+
Sbjct: 4 AGGGNDIQWCFSQVKGAVD--DDVAEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQE 60
Query: 593 TNKSPH 598
H
Sbjct: 61 NKIQSH 66
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 71.7 bits (175), Expect = 2e-13
Identities = 44/318 (13%), Positives = 93/318 (29%), Gaps = 47/318 (14%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPE 368
+ KL + D+ P + L + D S L+
Sbjct: 69 NENENKKLKSNKGDSIKRTAAKVP-----SPGLGAPPIYSYIRNLRLTSDESRLIACADS 123
Query: 369 DCHELWVWNIETE---LLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQV 425
D L V++++ +L+++ + S D T + G Y DI
Sbjct: 124 D-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182
Query: 426 LDSWEGV-------RVNCLWCRSDG---KSVLAADTHHRIRTYNFE--HLTDSNLLQEDH 473
+ + + + D + ++ +D I+ ++ + D L H
Sbjct: 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242
Query: 474 PVMSFTIDATDRLALLNVSTQG---VHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD 530
V S L +S G + WD + L F + + ++ A
Sbjct: 243 FVSSICCGKDYLL----LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH-LAPPR 297
Query: 531 FVASGSEDGKV---YIWHVKRELPIATLSGHTRTVSCVAWNP------VYHQMI------ 575
F ++ + I K +A T+ + + + Q+I
Sbjct: 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNV 357
Query: 576 ---ASVSDDCTVRIWGPH 590
++ +D+ V +
Sbjct: 358 ISLSAHNDEFQVTLDNKE 375
Score = 69.7 bits (170), Expect = 7e-13
Identities = 25/265 (9%), Positives = 66/265 (24%), Gaps = 40/265 (15%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS--SHLLVVG 366
+ D + K V D++ + ++ + GH + + DS ++
Sbjct: 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS 216
Query: 367 PEDCHELWVWNIET--ELLRVKLNH---------SPEDSLTSCS-------WN------- 401
D H + + + + + H + L S W+
Sbjct: 217 DRDEH-IKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275
Query: 402 --RDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHR-IRTY 458
D + + Q + V+ + + V + I
Sbjct: 276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335
Query: 459 NFEHLTDSNL-----LQEDHPVMSFTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGV 513
+L + + V+S + + L+ + I +
Sbjct: 336 EMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN----L 391
Query: 514 TQGQFTIHSCFGGANQDFVASGSED 538
+ F +++ + +
Sbjct: 392 NENSFVVNNEKSNEFDSAIIQSVQG 416
Score = 46.6 bits (110), Expect = 2e-05
Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 13/127 (10%)
Query: 473 HPVMSFTIDATDRLALLNVSTQGVHLWDL------------RDRILLRKFQGVTQGQFTI 520
HP+ + L + + + + D + T +
Sbjct: 5 HPLQNLLTSRDGSL-VFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQ 63
Query: 521 HSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSD 580
N++ ++ + K P + + ++IA
Sbjct: 64 GQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADS 123
Query: 581 DCTVRIW 587
D ++ ++
Sbjct: 124 DKSLLVF 130
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 69.0 bits (168), Expect = 8e-13
Identities = 14/179 (7%), Positives = 42/179 (23%), Gaps = 22/179 (12%)
Query: 300 HCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDS 359
E D L LA S D + ++++ + + + + ++ +
Sbjct: 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLS--SPDQASSRFPVDEEAKIKEVKFADNG 226
Query: 360 SHLLVVGPEDCHELWVWNIE----TELLRVKLNHSPEDSLTSCSWNRDGTKFVCGG---- 411
++V + +++ T + + + G +
Sbjct: 227 YWMVVECDQTVV---CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 283
Query: 412 -IRGQFYQCDIEGQVLDSWEGVR--------VNCLWCRSDGKSVLAADTHHRIRTYNFE 461
+ + + D + + DG T+
Sbjct: 284 SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALT 342
Score = 63.2 bits (153), Expect = 7e-11
Identities = 38/302 (12%), Positives = 82/302 (27%), Gaps = 27/302 (8%)
Query: 308 KFSPDGLKLATGSKDTTVIIWDV-DPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
D +D + + D T T A ++ P + LL++
Sbjct: 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPC-NRLLLLY 101
Query: 367 PEDCHELWVWNIETELLRVKLNHSPEDSLTSCSW--NRDGTKFVCGGIRGQFYQCDIEG- 423
P + ++ + + +T + ++ + + + F+ RG E
Sbjct: 102 PGN--QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD 159
Query: 424 ---QVLDSWEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTD-SNLLQEDH--PVMS 477
V + V + D + + YN S+ D +
Sbjct: 160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKE 219
Query: 478 FTIDATDRLALLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSC------------FG 525
A + ++ Q V +DLR + + T +F +
Sbjct: 220 VKF-ADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278
Query: 526 GANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVR 585
+ + D K W E + L T + + + A + + +
Sbjct: 279 SNESNSLTIYKFDKKTKNWTKDEESAL-CLQSDTADFTDMDVVCGDGGIAAILKTNDSFN 337
Query: 586 IW 587
I
Sbjct: 338 IV 339
Score = 56.7 bits (136), Expect = 8e-09
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 10/130 (7%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRK-TLEGHTLG 349
+++ D ++ KF+ +G + D TV+ +D+ T + T+ G
Sbjct: 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262
Query: 350 VAYLAWSPDSSHLLVVGPEDCHELW--------VWNIETELLRVKLNHSPEDSLTSCSWN 401
+++ E W + E + + + +
Sbjct: 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCG 322
Query: 402 RDGTKFVCGG 411
G +
Sbjct: 323 DGGIAAILKT 332
Score = 31.6 bits (71), Expect = 0.76
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 5/88 (5%)
Query: 283 LCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKD-TTVIIWDVDPVT----FTC 337
L T + + G + S + ++ I+ D T
Sbjct: 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDE 301
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHLLVV 365
+ L+ T + + +
Sbjct: 302 ESALCLQSDTADFTDMDVVCGDGGIAAI 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 9e-09
Identities = 103/595 (17%), Positives = 178/595 (29%), Gaps = 203/595 (34%)
Query: 74 VPAPAVKTMTRTDE--DIVRLIGQYLRTIGLDRTADLLMQESGCKLDHPSAA---KFRQH 128
+P P + DE L+G++L + + L+ + D +F
Sbjct: 41 LPEPT-EGFAADDEPTTPAELVGKFLGYV-----SSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 129 IMDGDWSKAD-HDLNDLEYLLDSRGDLVEMKFLILEQKYLEYLEDGRVLDALHVLRNELT 187
++G+ D H L + L ++ LV+ K LI + Y+ A + +
Sbjct: 95 YLEGN----DIHALA-AKLLQENDTTLVKTKELI--KNYIT---------ARIMAKRPFD 138
Query: 188 PLNHNTAKVHELSSFMMCSGVEQLLERAKWDGK-------GSQ-SRTKLMDKLQ------ 233
N+A L +G G Q + ++L+
Sbjct: 139 K-KSNSA----------------LFRAVG-EGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 234 -SFLPPTVMLPPRRLQTLLSQAVDLQKYHCPYHNTKVDESLENVSLL--VDHLCTKE-EF 289
+ + L L+ +D +K + E LEN S D+L +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 290 PC-ETTQVLNDHCDEVWFCK---FSP----DGLKLATG-SKD--TTVII-----WDVDPV 333
P Q+ + V K F+P LK ATG S+ T V I W+
Sbjct: 239 PLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---- 290
Query: 334 TFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELW-VWNIETELLRVKLNHSPE 392
+F RK + L + +G C+E + ++ +L E
Sbjct: 291 SFFVSVRKAIT-------VLFF---------IGVR-CYEAYPNTSLPPSIL--------E 325
Query: 393 DSLTSCSWNRDGTK---FVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAA 449
DSL N +G + + Q + + N S L A
Sbjct: 326 DSLE----NNEGVPSPMLSISNLTQEQVQDYVN----------KTN---------SHLPA 362
Query: 450 DTHHRIRTYNFEHLTDSNLLQEDHPVMS-FTIDATDRLALLNVSTQGVHLWDLRD--RIL 506
I N NL V+S L LN++ + D RI
Sbjct: 363 GKQVEISLVN----GAKNL------VVSGPPQS----LYGLNLTLRKAKAPSGLDQSRIP 408
Query: 507 L--RKFQGVTQGQF-TI----HSCF-GGANQDFVASGSEDGKVYIWHVKRELPIATLSGH 558
RK + +F + HS A+ ++ ++ K ++ I
Sbjct: 409 FSERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNN--VSFNAK-DIQI------ 457
Query: 559 TRTVSCVAWNPVYH--------QMIASVSDD-----CTVRI-WGPHLNTNKSPHL 599
PVY + S+S+ + + W K+ H+
Sbjct: 458 ----------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-ETTTQFKATHI 501
Score = 50.8 bits (121), Expect = 1e-06
Identities = 74/462 (16%), Positives = 123/462 (26%), Gaps = 174/462 (37%)
Query: 6 EDIVRLIGQYLRTI-------------GLD----GDSDDGAPPP--LKKSRAS------V 40
D+++ + L + GL+ ++ P L S +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 41 Q-ASGQEDMQANGSGPSN---HLNGNTHNGVPEINGEVPAPAVKTMTRTDEDIVRLIGQY 96
Q A + G P +L G T + + T + E + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHS-----QGLVTAVAIAETDSWESFFVSVRKA 299
Query: 97 LRT---IGLDRTADLLMQESGCKLDHPSAAKFRQHIMDGDWSKADHDLNDLEYLLDSRGD 153
+ IG+ R C +P+ + I++ +++ +L
Sbjct: 300 ITVLFFIGV-R----------CYEAYPNTS-LPPSILE---DSLENNEGVPSPMLSISN- 343
Query: 154 LVEMKFLILEQKYLE----YLEDGRVLDALHV-LRNELTPLNHN-TAKVHELSSFMMCSG 207
+ + + Q Y+ +L G+ + + L N N + L G
Sbjct: 344 -LTQEQV---QDYVNKTNSHLPAGK---QVEISLVN--GAKNLVVSGPPQSLY------G 388
Query: 208 VEQLLERAKWDGKGSQSRTKLMD-KLQ---SFLPPTVMLPPRRLQTLLSQAVDLQKYHCP 263
+ L +AK QSR + KL+ FLP V P +H
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VASP----------------FHSH 430
Query: 264 Y-----HNTKVDESLENVSLLVDHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLAT 318
D NVS + + P T DG L
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDI----QIPVYDTF----------------DGSDLRV 470
Query: 319 GSKDTTVIIWD---VDPVTFTCQHRKTLEGHTLGVAYLAW----SPDSSHLLVVGPEDCH 371
S + I D PV W ++H+L GP
Sbjct: 471 LSGSISERIVDCIIRLPV------------K--------WETTTQFKATHILDFGPGGAS 510
Query: 372 ELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIR 413
L LT N+DGT G+R
Sbjct: 511 GL-------------------GVLTHR--NKDGT-----GVR 526
Score = 34.6 bits (79), Expect = 0.12
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 34/108 (31%)
Query: 510 FQGVTQGQFTIHSCFGGANQDFVASGSEDG---------KVYIWHVKR--ELPIATLSGH 558
F+ V +G + + FGG Q G+ D + Y V + TLS
Sbjct: 146 FRAVGEGNAQLVAIFGG--Q-----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 559 TRTVSCVAWNPVYHQMIASVSDDCTVRIWGPHL-NTNKSP---HLASS 602
RT V+ Q + + + W L N + +P +L S
Sbjct: 199 IRTTL--DAEKVFTQGL----N---ILEW---LENPSNTPDKDYLLSI 234
Score = 29.6 bits (66), Expect = 3.8
Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 88/231 (38%)
Query: 69 EINGEVPAPAVKTMTRTDEDIVRLIGQYLRTIGLDRT-----ADLLMQESGCKLDHPSAA 123
+I E+ + R+++ + L T A LM A
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGL------------LSATQFTQPALTLM----------EKA 1742
Query: 124 KFR----QHIMDGDWSKADH---------------DLNDLEYLLDSRGDLVEMKFLILEQ 164
F + ++ D + A H + L ++ RG +++ E
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 165 KYLEY----LEDGRV-----LDALHVLRNE--------LTPLNHNTAK---VHELSSFMM 204
Y + GRV +AL + + +N+N V
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-------- 1854
Query: 205 CSGVEQLLERAKWDGKGSQSRTKLMD--KLQS--FLPPTVMLPPRRLQTLL 251
+G + L+ T +++ KLQ + L ++ L
Sbjct: 1855 AAGDLRALDTV----------TNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-05
Identities = 64/367 (17%), Positives = 105/367 (28%), Gaps = 108/367 (29%)
Query: 307 CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAW----SPDSSHL 362
CK D K ++ II D V+ G L W +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVS--------------GTLRLFWTLLSKQEEMVQ 80
Query: 363 LVVGPEDCHEL---WVWN-IETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI-RGQFY 417
V E+ + ++ + I+TE + + +N D F + R Q Y
Sbjct: 81 KFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPY 137
Query: 418 QCDIEG-QVLDSWEGVRVN----CLWCRSDGKSVLAADT---HHRIRTYNFE-------- 461
+ L + V ++ GK+ +A D + +F+
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS------GKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 462 ---------------HLTDSNLLQEDHPVMSFTI---DATDRL-----------ALL--- 489
+ D N + + L LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 490 NVSTQGVHLW---DLRDRILL--RKFQGVT---QGQFTIHSCFGGANQDFVASGSED--G 539
NV W +L +ILL R F+ VT T H + +
Sbjct: 252 NVQNAKA--WNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 540 KVYIWHVKRELPIATLSGHTRTVSCVAWNPVYHQMIASVSDDCTVRI--WGPHLNTNKSP 597
K Y+ ++LP L+ + R +S +IA D W H+N +K
Sbjct: 309 K-YLDCRPQDLPREVLTTNPRRLS----------IIAESIRDGLATWDNW-KHVNCDKLT 356
Query: 598 H-LASSL 603
+ SSL
Sbjct: 357 TIIESSL 363
Score = 47.2 bits (111), Expect = 1e-05
Identities = 75/609 (12%), Positives = 158/609 (25%), Gaps = 209/609 (34%)
Query: 127 QHIMDGDWSKADHDLND-LEYLLDS-RGDL----VE--MKFLILEQKYLEYLEDGRVLDA 178
H MD + + + D L D+ + V+ K ++ +++ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 179 LHVLRNELTPLNHNTAK--VHELS----SFMMCSGVEQLLERAKWDGKGSQSRTKLMDKL 232
L L + V E+ F+M + + + + R +L +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 233 QSFLPPTVMLPPR-----RLQTLLSQA--------------------------------- 254
Q F V R +L+ L +
Sbjct: 124 QVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 255 ------VDLQKYHCPYHNTKVDESLENVSLLVDH-LCTKEEFPCETTQVLND-------- 299
++L+ + P V E L+ + +D ++ + ++
Sbjct: 181 DFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 300 -------HC----DEVW-------F---CKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQ 338
+C V F CK L T ++ V D ++
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLT-TRFKQVT----DFLSAATT 286
Query: 339 HRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNHSP------- 391
+L+ H++ + + LL ++ +L R L +P
Sbjct: 287 THISLDHHSMTLT----PDEVKSLL--------LKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 392 ----EDSLTSCSWNRDGTKFVCGGI------------RGQFYQC-------DIEGQVLDS 428
+ T +W + I R F + I +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 429 WEGVRVNCLWCRSDGKSVLAADTHHRIRTYNFEHLTDSNLLQEDHPVMSFTI-DATDRLA 487
+W V+ + L +L+++ + +I L
Sbjct: 395 --------IWFDVIKSDVM------VV----VNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 488 LLNVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQDFVASGSEDGKVYI-WHV 546
+ + +H R ++ + I F + D + D Y H+
Sbjct: 437 VKLENEYALH------RSIVDHYN--------IPKTF--DSDDLIPP-YLDQ--YFYSHI 477
Query: 547 KRELPIATLSGHT---RTV-------------SCVAWNPVYHQMIASVSDDCT-VRIWGP 589
L R V AWN S+ + ++ + P
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-----GSILNTLQQLKFYKP 532
Query: 590 HLNTNKSPH 598
++ + P
Sbjct: 533 YI-CDNDPK 540
Score = 34.1 bits (77), Expect = 0.16
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 91 RLIGQYLRTIGLDRTA-----DLLMQESGCKLDHPSAAKFRQHIMDGDWSKADHDLNDLE 145
R + Q +R A + L Q L ++ +I D D K + +N +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQ-----LK-----FYKPYICDND-PKYERLVNAIL 549
Query: 146 -YLLDSRGDLVEMKFLILEQKYLEYLEDGRVLDA 178
+L +L+ K+ L + L ++ +A
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 44.4 bits (105), Expect = 9e-05
Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 17/177 (9%)
Query: 290 PCETTQVLNDHCDEVWFCKFSPDGLKLATGSKD--------TTVIIWDVDPVTFTCQHRK 341
++ +D V + SPDG + + D T + V R
Sbjct: 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIETELLRVKLNH-----SPEDSLT 396
L G +A W+PD S ++ L + T P +
Sbjct: 236 LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG 295
Query: 397 SCSWNRDGTKFVCGGI---RGQFYQCDIE-GQVLDSWEGVRVNCLWCRSDGKSVLAA 449
+ + D E G+++D+ G +
Sbjct: 296 MRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGV 352
Score = 39.8 bits (93), Expect = 0.003
Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 16/147 (10%)
Query: 329 DVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG------PEDCHELWV--WNIET 380
D R+ + V SPD + + P + EL +
Sbjct: 169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228
Query: 381 ELLRVK-LNHSPEDSLTSCSWNRDGTKFVCGGIRG--QFYQCDIEG---QVLDSWEGVRV 434
+ L PE+++ W DG+ V G ++ D L E
Sbjct: 229 RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288
Query: 435 NCLWCRSDGKSVLAADTHHRIRTYNFE 461
LW + G A + I + +
Sbjct: 289 GPLW--TPGMRWFAPLANGLIAVVHGK 313
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 42.4 bits (99), Expect = 3e-04
Identities = 32/317 (10%), Positives = 83/317 (26%), Gaps = 59/317 (18%)
Query: 316 LATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWV 375
+ ++ +++ D T+ +P + L
Sbjct: 4 ILAPARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-ESLVK 60
Query: 376 WNIET--ELLRVKLNHSPE--DSLTSCSWNRDGTKFVCGGIRGQFYQCDIE--------- 422
++ T L R+ L+ E SL + + DG + E
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 423 ----GQVLDSWE-GVRVNCLWCRSDGKSVLAA---------DTHHRIRTYNFEHLTDSNL 468
++E ++ L DG + + + +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 469 LQEDHPVMSFTIDATDRLALLNVSTQ-------------GVHLWDLR-DRILLRKFQGVT 514
Q D + +++ +A + + G+ DL + +R+ + +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 515 QGQFTIHSCFGGANQDFVASGSEDGKVYIWHVKRELPIATLSGHTRTVSCVAWNP----V 570
F+ + F A + + +++ I + + V + V
Sbjct: 241 VFYFSTAVNPAK-TRAFGAYNV----LESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294
Query: 571 YHQMIASVSDDCTVRIW 587
+ + D + +
Sbjct: 295 W---LGGALGD--LAAY 306
Score = 31.3 bits (70), Expect = 0.92
Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 33/182 (18%)
Query: 302 DEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSH 361
++ ++ DG KL +D V+ DP T K ++ PD
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVM----DPEAGTLVEDKPIQSWEAETYA---QPDVLA 187
Query: 362 LLVVG----------------------PEDCHELWVWNIETELLRVKLNHSPEDSLTSCS 399
+ L ++ET + ++ + S +
Sbjct: 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247
Query: 400 WNRDGTKFVCGGIRGQFYQCDIE-GQVLDSWE-GVRVNCLWCRSDGKSVLAADTHHRIRT 457
N T+ G D+E + + +DG +V +
Sbjct: 248 VNPAKTRAF--GAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 458 YN 459
Y+
Sbjct: 306 YD 307
Score = 30.9 bits (69), Expect = 1.1
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+ S DG + G + +D +
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAE 309
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 39.0 bits (91), Expect = 0.003
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 309 FSPDGLKLA---TGSKDTTVIIWDVDPVTFTCQHRK--TLEGHTLGVAYLAWSPDSSHLL 363
+SPDG KLA S + ++I + R+ + H A +SPD S L
Sbjct: 186 WSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQVASFPRHNGAPA---FSPDGSKLA 238
Query: 364 VVGPED-CHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG---QFYQC 419
+ L+V ++ + +R + + T +W D + Q Y+
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNN--TEPTWFPDSQNLAFTSDQAGRPQVYKV 296
Query: 420 DIEG 423
+I G
Sbjct: 297 NING 300
Score = 31.7 bits (72), Expect = 0.73
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 354 AWSPDSSHLLVVGPED-CHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
AWSPD S L V E L + + +R + + + +++ DG+K
Sbjct: 185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG--APAFSPDGSKLAFALS 242
Query: 413 RG---QFYQCDIEGQVL 426
+ Y D+ +
Sbjct: 243 KTGSLNLYVMDLASGQI 259
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 38.1 bits (89), Expect = 0.005
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 308 KFSPDGLKLATGSKDT---TVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLV 364
+ S +L+TG + ++ I+++ T + R + L WSPD +LL+
Sbjct: 4 RQSTLHTRLSTGPGGSMRSSIEIFNIR----TRKMRVVWQTPEL-FEAPNWSPDGKYLLL 58
Query: 365 VGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTK--FVCGGIRGQF--YQCD 420
+ L + + + DG G+ Y
Sbjct: 59 NSEGLLYRLSLAGDPSP--EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116
Query: 421 IEG 423
G
Sbjct: 117 STG 119
Score = 33.9 bits (78), Expect = 0.12
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 309 FSPDGLKLA-TGSKDT-TVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVG 366
SPDG A + + I+ + + + + + WSPD G
Sbjct: 92 ISPDGALYAISDKVEFGKSAIYLLPSTG---GTPRLMTKNLPSYWH-GWSPDGKSFTYCG 147
Query: 367 PEDCH-ELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRG---QFYQCDIE 422
D +++ +I++ + +L H + ++ DG R Q ++ ++
Sbjct: 148 IRDQVFDIYSMDIDSGVET-RLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVD 205
Query: 423 G 423
G
Sbjct: 206 G 206
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 38.4 bits (89), Expect = 0.005
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEG--HTLGVAYLAWSPDSSHLLVVG 366
F + +D + + +D + E LG P+ + L V
Sbjct: 130 FIDNTRLAIPLLEDEGMDV--LDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ 187
Query: 367 PEDCHELWVWNIET 380
+ + + V++++T
Sbjct: 188 MQA-NAVHVFDLKT 200
Score = 38.4 bits (89), Expect = 0.006
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 309 FSPDGLKL-ATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGP 367
P+ +L + + V ++D+ T ++ T++ L + P +
Sbjct: 176 SIPEHNELWVSQMQANAVHVFDLK----TLAYKATVDLTGKWSKILLYDPIRDLVYCSNW 231
Query: 368 EDCHELWVWNIET--ELLRVKLNHSPEDSLTSCSWNRDGTK-FVCGGIRGQFYQCDIEGQ 424
++ V + +T E+ + P L S +DG + ++
Sbjct: 232 IS-EDISVIDRKTKLEIRKTDKIGLPRGLLLS----KDGKELYIAQFSASNQESGGGRLG 286
Query: 425 VLD 427
+
Sbjct: 287 IYS 289
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 38.6 bits (89), Expect = 0.007
Identities = 21/254 (8%), Positives = 66/254 (25%), Gaps = 32/254 (12%)
Query: 295 QVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLA 354
+ ++ V+ +G + ++ D++ T + +
Sbjct: 372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----TGKPTVIERSREAMITDFT 427
Query: 355 WSPDSSHLLVVGPEDCHE--------LWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTK 406
S +S + P E + V+++E + + D + +++ D
Sbjct: 428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY--APAFDADSKN 485
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKS---------------VLAADT 451
R D + + + D
Sbjct: 486 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545
Query: 452 HHRIRTYNFEHLTDSNLLQEDHPVMSFTIDATDRLALLNVSTQG---VHLWDLRDRILLR 508
+ R N + ++ + ++ +++ A + +D++ R +
Sbjct: 546 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 605
Query: 509 KFQGVTQGQFTIHS 522
+T + +
Sbjct: 606 VKNNLTDLRLSADR 619
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 37.4 bits (86), Expect = 0.010
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 3/80 (3%)
Query: 309 FSPDGLKL-ATGSKDTTVIIWDVD--PVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVV 365
+PD + + D+D TF + A SPD +
Sbjct: 50 MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT 109
Query: 366 GPEDCHELWVWNIETELLRV 385
+ ++ L V
Sbjct: 110 VNPTQRLNDHYVVKPPRLEV 129
Score = 34.7 bits (79), Expect = 0.086
Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 309 FSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY----LAWSPDSSHLLV 364
+ + + + DV + + + +PD+ V
Sbjct: 7 LKAGHEYMIVTNYPNNLHVVDVA-------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 59
Query: 365 VGPEDCHELWVWNIET--ELLRVKLNHSPEDSLTSCS---WNRDGTKFV 408
+ +++ +++T L+ P + S + DG +
Sbjct: 60 LNNHY-GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 107
Score = 29.3 bits (65), Expect = 3.4
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVD 331
+ F G KL G + +++ D
Sbjct: 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPD 324
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 37.1 bits (86), Expect = 0.016
Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 12/168 (7%)
Query: 293 TTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY 352
+ L + D + V ++ + + + + +
Sbjct: 143 GLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGEGSFSS 199
Query: 353 LAWSPDSSHLLVVGPEDCHELWVWNIET----ELLRVKLNHSP--EDSLTSCSWNRDGTK 406
+ SP + L + +L + S ++T + DG
Sbjct: 200 ASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 259
Query: 407 FVCGGIRGQFYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAADTHHR 454
V G+ I+G+ +++ +G GK V + +
Sbjct: 260 AVVARREGR-SAVFIDGERVEAPQGNHGR--VVLWRGKLVTSHTSLST 304
Score = 34.4 bits (79), Expect = 0.11
Identities = 30/256 (11%), Positives = 58/256 (22%), Gaps = 28/256 (10%)
Query: 303 EVWFCKFSPDGLKLATGSKDTTVI-IWDVD---PVTFTCQHRKTLEGHTLGVAYLAWSPD 358
E + + DG KL + + D V +
Sbjct: 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------REPINSVLDPHYGV 74
Query: 359 SSHLLV---VGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQ 415
+LV + H L+ N +L + S + F +
Sbjct: 75 GRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGAT-EDR 133
Query: 416 FYQCDIEGQVLDSWEGVRVNCLWCRSDGKSVLAA----DTHHRIRTYNFEHLTDSNLLQE 471
++G L + G + + T N
Sbjct: 134 VALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG 193
Query: 472 DHPVMSFTIDATDRLALLNVSTQGVHL--WDLRDRILLRKFQGVTQGQFTIHSCFGGANQ 529
+ S +I ++ + + L D RD + + S A
Sbjct: 194 EGSFSSASISPGMKVTAGLETAREARLVTVDPRD----GSVEDLELPSKDFSSYRPTAIT 249
Query: 530 DFVASGSEDGKVYIWH 545
DG++ +
Sbjct: 250 WLGY--LPDGRLAVVA 263
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 36.4 bits (84), Expect = 0.020
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 29/159 (18%)
Query: 308 KFSPDGLKLA---TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLV 364
+ SPDG K+A + IW D T + + + + L W+ DS LL+
Sbjct: 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----IRSLEWNEDSRKLLI 120
Query: 365 VGPEDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIE-G 423
VG + + + D F G + F+ D E
Sbjct: 121 VGFKRREDEDFIFEDDVPAW-----------------FDDLGFFDGE-KTTFWIFDTESE 162
Query: 424 QVLDSWEGVRVNCL-WCRSDGKSVLAADTHHRIRTYNFE 461
+V++ +E R + W K V+ I Y
Sbjct: 163 EVIEEFEKPRFSSGIW--HRDKIVVNVPHREIIPQYFKF 199
Score = 30.2 bits (68), Expect = 1.8
Identities = 12/145 (8%), Positives = 35/145 (24%), Gaps = 22/145 (15%)
Query: 281 DHLCTKEEFPCETTQVLNDHCDEVWFCKFSPDGLKLATGSKD------TTVIIWDVDPVT 334
+ E + + D + + ++ I+ +
Sbjct: 152 TTFWIFDTESEEVIEEFEK--PRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWED-- 207
Query: 335 FTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHE----LWVWNIETELLRVKLNHS 390
E V++ A D +L+ G + ++ + + + +
Sbjct: 208 ------GKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVM-GILDE 260
Query: 391 PEDSLTSCSWNRDGTKFVCGGIRGQ 415
+ + DG + G
Sbjct: 261 VDRGVGQAKIK-DGKVYFTLFEEGS 284
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A
{Yersinia enterocolitica subsp}
Length = 388
Score = 36.0 bits (82), Expect = 0.035
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 27/144 (18%)
Query: 309 FSPDGLKLATGS---KDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL---AWSPDSSHL 362
+ PDG L S I+ DP T + ++ + ++ D S
Sbjct: 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDA 304
Query: 363 LVVGPEDCH-------ELWVWNIETELLRVKLNHSPEDSL---------TSCSWNRDGTK 406
V +D L+V+N++ H + S+ D +
Sbjct: 305 PVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ 364
Query: 407 FV----CGGIRGQFYQCDIEGQVL 426
+ G + Y + V
Sbjct: 365 ILFTSDVHG-KPALYLATLPESVW 387
Score = 31.3 bits (70), Expect = 0.84
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 316 LATGSK-DTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYL---AWSPDSSHLLVVGPEDCH 371
+A G + T + D T R T T Y ++ D S LL G D
Sbjct: 1 MAKGKQIPLTFDTY-QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGP 59
Query: 372 -ELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGIRGQFYQCDIEGQ 424
++ ++ T++ +L D+ + D + D+
Sbjct: 60 WNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112
Score = 31.0 bits (69), Expect = 1.2
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVV---GPEDC--HELWVWNIETELLRVKLNHSPEDS 394
+ + + + P + GP D +W+ N + +R H+ +S
Sbjct: 180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES 239
Query: 395 LTSCSWNRDGTK-----FVCGGIRGQFYQCDIEG 423
T W DG+ ++ G Y D E
Sbjct: 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 34.8 bits (79), Expect = 0.080
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 16/129 (12%)
Query: 304 VWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLL 363
CK SP +A S + V ++ + + + L T W+P +
Sbjct: 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHC--FEWNPI-ESSI 144
Query: 364 VVGPEDCHELWVWNIETELLRVKL----------NHSPEDSLTSCSWNRDGTKFVCGGIR 413
VVG ED EL ++I + +D +T W D V
Sbjct: 145 VVGNEDG-ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--VLVAALSN 201
Query: 414 GQFYQCDIE 422
+ +
Sbjct: 202 NSVFSMTVS 210
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 34.2 bits (77), Expect = 0.11
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 354 AWSPDSSHLLVVGPEDCH-ELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTKFVCGGI 412
++ D LL G D + ++ N+ET+ +L D+ + D F
Sbjct: 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDERAFFYVKN 100
Query: 413 RGQFYQCDIEG 423
+ D+E
Sbjct: 101 ELNLMKVDLET 111
Score = 29.6 bits (65), Expect = 3.1
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLVV-----GPEDCHELWVWNIETELLRVKLNHSPEDS 394
+ + T + + + P + +W+ N + +R H+ +S
Sbjct: 180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES 239
Query: 395 LTSCSWNRDGTKFVCGGIRGQFYQCDIEGQVLDSWEGVRV 434
T W DG+ I ++ E V
Sbjct: 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV 279
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.27
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 338 QHRKTLEGHTLGVAYLAWSPDSSHLLVV 365
Q K L+ +L + Y + DS+ L +
Sbjct: 20 QALKKLQA-SLKL-Y---ADDSAPALAI 42
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 32.1 bits (73), Expect = 0.47
Identities = 33/262 (12%), Positives = 76/262 (29%), Gaps = 25/262 (9%)
Query: 318 TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWN 377
S+ + + +D + + + +G SPD + + V +++ + +
Sbjct: 7 ANSESDNISV--IDVTSNKVTATIPVGSNPMGAVI---SPDGTKVYVANAHS-NDVSIID 60
Query: 378 IET--ELLRVKLNHSPEDSLTSCSWNRDGTK-FVCGGIRGQFYQCDIE-GQVLDSWE-GV 432
T + V SP+ + + DG + +V D V + + G
Sbjct: 61 TATNNVIATVPAGSSPQG----VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116
Query: 433 RVNCLWCRSDGKSVLAADTH-HRIRTYNFEHLT-DSNLLQEDHPV-MSFTIDATDRLALL 489
L DGK + + + N + + P ++ T D ++ +
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD-GTKVYVA 175
Query: 490 NVSTQGVHLWDLRDRILLRKFQGVTQGQFTIHSCFGGANQD-FVA-SGSEDGKVYIWHVK 547
N + + + D ++ V +V V +
Sbjct: 176 NFDSMSISVIDTVTNSVIDT---VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232
Query: 548 RELPIATLSGHTRTVSCVAWNP 569
A + + +A P
Sbjct: 233 TNKITARIPVGPD-PAGIAVTP 253
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 31.7 bits (72), Expect = 0.68
Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 22/223 (9%)
Query: 309 FSPDGLKLA-TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAYLAWSPDSSHLLVVGP 367
F + T ++ TL + A + D S+++V
Sbjct: 5 FQTTSNFGIVVEQHLRRISF--FSTDTLEILNQITLGYDFVDTA---ITSDCSNVVVTSD 59
Query: 368 EDCHELWVWNIETELLRVKLNHSPEDSLTSCSWNRDGTK-FVCGGIRGQFYQCDIE---G 423
L + E +V + S+ D G+ F
Sbjct: 60 FC-QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118
Query: 424 QVLDSWE-GVRVNCLWCRSDGKSVLAA-----DTHHRIRTYNFEHLTDSNLLQ---EDHP 474
+ + + + +G ++ +T R + L D+ P
Sbjct: 119 KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRP 178
Query: 475 VMSFTIDATDRLALL-NVSTQGVHLWDLRDRILLRKFQGVTQG 516
+ T A + N+ + + + ++ + V
Sbjct: 179 F-NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN 220
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 31.6 bits (72), Expect = 0.94
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 32/133 (24%)
Query: 308 KFSPDGLKLA----TGSKDTTVIIWDVDPVT----------------------FTCQHRK 341
K +PDG ++ S + +W D + + +
Sbjct: 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRER 102
Query: 342 TLEGHTLGVAYLAWSPDSSHLLVVGPEDCHELWVWNIET-ELLRVKLNHSPEDSLTSCSW 400
G+ WSPD+ LL + L++++++ V+ E T
Sbjct: 103 QRIAAMTGIVDYQWSPDAQRLLFPLGGE---LYLYDLKQEGKAAVRQLTHGEGFATDAKL 159
Query: 401 NRDGTK--FVCGG 411
+ G F+ G
Sbjct: 160 SPKGGFVSFIRGR 172
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 31.4 bits (71), Expect = 1.1
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 26/130 (20%)
Query: 302 DEVWFCKFSP--------DGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL---GV 350
++ FS G + S D +++++++ T Q L T+
Sbjct: 7 KDILNGTFSYKTFFPNWISGQEYLHQSADNNIVLYNIE----TGQSYTILSNRTMKSVNA 62
Query: 351 AYLAWSPDSSHLLV---VGPEDCH----ELWVWNIETELLRVKLNHSPEDSLTSCSWNRD 403
+ SPD + + + +++++ V+ N P + W+
Sbjct: 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF-VRGNELPRP-IQYLCWSPV 120
Query: 404 GTK--FVCGG 411
G+K +V
Sbjct: 121 GSKLAYVYQN 130
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 29.8 bits (67), Expect = 3.4
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 340 RKTLEGHTLGVAYLAWSPDSSHLLV---VGPEDCH----ELWVWNIETELLRVKLNHSPE 392
T + + + SPD +L+ + H ++++ ++
Sbjct: 54 NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QLITEERIP 111
Query: 393 DSLTSCSWNRDGTK--FVCGG 411
++ +W+ G K +V
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNN 132
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 29.5 bits (67), Expect = 3.8
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 309 FSPDGLKLA-----TGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGVAY--LAWSPDSSH 361
FS DG A +GS T+ VD K L V + +AW+ D
Sbjct: 132 FSEDGEYFAYGLSASGSDWVTIKFMKVD----G---AKELPDVLERVKFSCMAWTHDGKG 184
Query: 362 L 362
+
Sbjct: 185 M 185
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
reductace, succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B*
2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Length = 243
Score = 28.8 bits (65), Expect = 5.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 164 QKY-LEYLEDGRVLDALHVLRNELTP 188
Y + Y +LDAL +++ L P
Sbjct: 24 AFYEVPYDATTSLLDALGYIKDNLAP 49
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 25.9 bits (57), Expect = 5.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 284 CTKEEFPCETTQVLNDHC-DEVWFCKFSPD 312
C +F C + C + W C PD
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPD 34
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 27.5 bits (61), Expect = 6.4
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 291 CETTQVLNDHCDEVWFCKFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTLGV 350
T + +V K SP G+ L + + +++ + H
Sbjct: 33 VATAKASGKKLQKVTL-KVSPRGIILTDSLTSQLIENVSIYRISYCTADKM----HDKVF 87
Query: 351 AYLAWSPDSSHLLVVGPEDCH 371
AY+A S + L CH
Sbjct: 88 AYIAQSQQNESLE------CH 102
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 28.6 bits (64), Expect = 7.1
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Query: 308 KFSPDGLKLATGSKDTTVIIWDVDPVTFTCQHRKTLEGHTL---GVAYLAWSPDSSHLLV 364
K+ D + + TV +W+V+ T +EG + SPD + L
Sbjct: 23 KWISDT-EFIYREQKGTVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALF 77
Query: 365 ---VGPEDCH----ELWVWNIET-ELLRVKLNHSPEDSLTSCSWNRDGTKFV 408
V P H + I + + L W G + +
Sbjct: 78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI 129
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, barrel; HET: FLC NDP;
2.4A {Homo sapiens}
Length = 360
Score = 28.0 bits (63), Expect = 8.9
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 217 WDGKGSQSRTKLMDKLQSFLPPTVMLPPRRLQTLLSQAVDLQKYHCPYHNTKVDESLENV 276
WDGK + +L++ L +RLQ VDL H P H T V+E+L
Sbjct: 110 WDGKSL-KPDSVRSQLETSL--------KRLQC---PQVDLFYLHAPDHGTPVEETLHAC 157
Query: 277 SLLV 280
L
Sbjct: 158 QRLH 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.423
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,453,637
Number of extensions: 571264
Number of successful extensions: 3215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1855
Number of HSP's successfully gapped: 666
Length of query: 604
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 505
Effective length of database: 3,937,614
Effective search space: 1988495070
Effective search space used: 1988495070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)