BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10569
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MY7|A Chain A, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|B Chain B, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|C Chain C, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|D Chain D, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
Length = 452
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 48 DELVRMKREIASAMVEK----GV-----QERVRLTQIYEKKKEELERQHAHVRQMFDEEK 98
DE +KR +AS + K GV Q + + ++Y++ KE AHV D +K
Sbjct: 222 DETADIKRAVASVLXSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADK 281
Query: 99 AR 100
R
Sbjct: 282 VR 283
>pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific Cysteine
Proteinase Gingipain R (Rgpb)
Length = 435
Score = 29.6 bits (65), Expect = 0.52, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 17 EKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIY 76
EKE ++ + K D+K +D R V++ +IAS + +Q+ V+ Q Y
Sbjct: 6 EKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVK--QEY 63
Query: 77 EKKKEEL 83
EK+ +L
Sbjct: 64 EKEGNDL 70
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 22 EVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQER 69
V + R + + T H + D+LV +E SA+ EKG+ E+
Sbjct: 282 SVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEK 329
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 79 KKEELERQHAHVRQMFDEEKARTKAHILKEYE 110
K+E+ ER +Q+ EE+A+ KA IL++YE
Sbjct: 478 KREQAERAG---QQLGVEEEAKIKAPILEQYE 506
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 5 QSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEK 64
Q ++K L+ E +++ K+L+ KR + ++ T+ + E R+K+EI ++ +++
Sbjct: 121 QIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQE--RLKKEINNSHIQE 178
Query: 65 GVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKF 113
VQ LT+ + +++LE + A + E++ + + + EYE K
Sbjct: 179 VVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.323
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,305,859
Number of Sequences: 62578
Number of extensions: 122465
Number of successful extensions: 546
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 55
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)