Query psy10569
Match_columns 128
No_of_seqs 32 out of 34
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:45:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08703 PLC-beta_C: PLC-beta 100.0 2.1E-32 4.5E-37 216.0 13.5 113 2-118 51-163 (185)
2 KOG1265|consensus 99.9 5.1E-23 1.1E-27 191.2 13.5 116 1-119 1072-1187(1189)
3 PF09304 Cortex-I_coil: Cortex 89.1 7.7 0.00017 29.0 9.8 67 3-98 12-78 (107)
4 PF09731 Mitofilin: Mitochondr 76.8 55 0.0012 29.2 13.8 93 12-108 267-360 (582)
5 KOG4807|consensus 52.3 82 0.0018 29.1 7.8 83 14-103 294-377 (593)
6 PF11656 DUF3811: YjbD family 40.2 62 0.0013 23.5 4.2 28 12-39 6-33 (87)
7 PF04568 IATP: Mitochondrial A 39.3 43 0.00092 24.5 3.3 27 3-29 68-94 (100)
8 KOG1318|consensus 39.2 1.9E+02 0.0041 26.1 7.9 81 17-101 230-320 (411)
9 PRK11677 hypothetical protein; 35.3 1.3E+02 0.0028 22.9 5.5 48 62-110 24-71 (134)
10 PHA02148 hypothetical protein 34.6 1.7E+02 0.0036 21.9 5.8 48 53-100 34-81 (110)
11 PRK10515 hypothetical protein; 34.2 83 0.0018 22.9 4.1 28 12-39 8-35 (90)
12 TIGR03545 conserved hypothetic 28.9 4E+02 0.0086 24.6 8.5 71 19-96 192-262 (555)
13 COG5185 HEC1 Protein involved 26.0 5.8E+02 0.012 24.2 9.1 91 7-98 330-430 (622)
14 smart00502 BBC B-Box C-termina 25.3 2.2E+02 0.0047 19.1 8.4 6 92-97 75-80 (127)
15 PF03938 OmpH: Outer membrane 22.9 3E+02 0.0065 19.9 9.9 29 73-101 93-121 (158)
16 KOG0163|consensus 22.0 8.5E+02 0.019 24.8 11.4 65 27-92 921-986 (1259)
17 KOG3091|consensus 21.3 6.6E+02 0.014 23.5 8.4 62 42-110 381-442 (508)
No 1
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=100.00 E-value=2.1e-32 Score=216.04 Aligned_cols=113 Identities=38% Similarity=0.564 Sum_probs=106.7
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 2 KTSQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKE 81 (128)
Q Consensus 2 ~~~q~~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e 81 (128)
+.||++|||+||++||+|++||+++|+++|.|+|+. ++|+||++++|+|||||++||++||++|+||+++|+++++
T Consensus 51 ~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~----k~~~dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqe 126 (185)
T PF08703_consen 51 RECQAAQLKKLKETCEKETKELKKKLDRKRLESIKE----KKTKDKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQE 126 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH----hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHhhccccccccC
Q psy10569 82 ELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFEN 118 (128)
Q Consensus 82 ~L~~~h~ev~q~i~eer~k~~~~l~~e~e~~~~~~~~ 118 (128)
+|..+|.+++|+|.+++|++++.|.++|++++++.+.
T Consensus 127 kL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~ 163 (185)
T PF08703_consen 127 KLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQ 163 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999887654
No 2
>KOG1265|consensus
Probab=99.89 E-value=5.1e-23 Score=191.20 Aligned_cols=116 Identities=36% Similarity=0.497 Sum_probs=109.7
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 1 MKTSQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKK 80 (128)
Q Consensus 1 ~~~~q~~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~ 80 (128)
+..||.+|+|+||++||+|++||++.|+.+|.|+|+. . +++|||++.+|++||||+++|+++|++|+||++++.+++
T Consensus 1072 ~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-~--~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~ 1148 (1189)
T KOG1265|consen 1072 LSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV-D--KVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQ 1148 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999995 3 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHhhccccccccCC
Q psy10569 81 EELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENE 119 (128)
Q Consensus 81 e~L~~~h~ev~q~i~eer~k~~~~l~~e~e~~~~~~~~~ 119 (128)
++|.++|.+++++|.++.+.+++.+..+|+.++.+....
T Consensus 1149 e~L~k~~~~~leql~e~~kal~~e~~~~~e~~~~~~p~~ 1187 (1189)
T KOG1265|consen 1149 EQLVKKHLEVLEQLAEEEKALDAEAEQEYEEQMARLPAE 1187 (1189)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999888776553
No 3
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.09 E-value=7.7 Score=28.96 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=48.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 3 TSQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEE 82 (128)
Q Consensus 3 ~~q~~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~ 82 (128)
....+++..|..++|.+| -|+.+|+ ++||.| ...++.+..=-.....|..+
T Consensus 12 ~el~n~La~Le~slE~~K------------~S~~eL~-----kqkd~L------------~~~l~~L~~q~~s~~qr~~e 62 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEK------------TSQGELA-----KQKDQL------------RNALQSLQAQNASRNQRIAE 62 (107)
T ss_dssp --HHHHHHHHHHHHHHHH------------HHHHHHH-----HHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------hhHHHHH-----HhHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 456788888988888665 3445555 566663 34455555555778889999
Q ss_pred HHHHHHHHHHHhHHHH
Q psy10569 83 LERQHAHVRQMFDEEK 98 (128)
Q Consensus 83 L~~~h~ev~q~i~eer 98 (128)
|++++.+++..++.++
T Consensus 63 Lqaki~ea~~~le~eK 78 (107)
T PF09304_consen 63 LQAKIDEARRNLEDEK 78 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999954
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=76.78 E-value=55 Score=29.18 Aligned_cols=93 Identities=28% Similarity=0.365 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy10569 12 LRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKE-ELERQHAHV 90 (128)
Q Consensus 12 LKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e-~L~~~h~ev 90 (128)
|.++-..+..++...|..++.+..+.+. .+-...++....+....+-.+.-..+.+|.+.+..+-. +|.++.+.+
T Consensus 267 l~~l~~~~~~~l~~~L~~q~~e~~~~~~----~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~ 342 (582)
T PF09731_consen 267 LAELKEEEEEELERALEEQREELLSKLR----EELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAH 342 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445677777777776556644 12222233223355666777777777777777665544 677777777
Q ss_pred HHHhHHHHHhHHHHHHHh
Q psy10569 91 RQMFDEEKARTKAHILKE 108 (128)
Q Consensus 91 ~q~i~eer~k~~~~l~~e 108 (128)
.+++.++.......+.++
T Consensus 343 ~~~l~~~l~~~~~e~~~~ 360 (582)
T PF09731_consen 343 EEHLKNELREQAIELQRE 360 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655444444333
No 5
>KOG4807|consensus
Probab=52.34 E-value=82 Score=29.11 Aligned_cols=83 Identities=27% Similarity=0.283 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 14 VLLEKETEEVMKRLQTKRREDVKKLL-DKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQ 92 (128)
Q Consensus 14 e~~EkEkkEl~k~L~~kR~~eik~l~-~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q 92 (128)
+-+++++-++--+|+.-|..- +.+- +.++-+|+.. .--+|....-++|.+... +..-+..++|+++|+.-++
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~-e~~q~~~~s~~d~~~---~~~~~~qatCERgfAaME---etHQkkiEdLQRqHqRELe 366 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQG-EAPQSALRSQEDGHI---PPGYISQATCERGFAAME---ETHQKKIEDLQRQHQRELE 366 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCchhhHhhhhhccC---CccHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456788888888998877543 2211 1124444443 223567777788887654 8999999999999999999
Q ss_pred HhHHHHHhHHH
Q psy10569 93 MFDEEKARTKA 103 (128)
Q Consensus 93 ~i~eer~k~~~ 103 (128)
.|.+|+..+.+
T Consensus 367 kLreEKdrLLA 377 (593)
T KOG4807|consen 367 KLREEKDRLLA 377 (593)
T ss_pred HHHHHHHhhhh
Confidence 99999887654
No 6
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=40.22 E-value=62 Score=23.47 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10569 12 LRVLLEKETEEVMKRLQTKRREDVKKLL 39 (128)
Q Consensus 12 LKe~~EkEkkEl~k~L~~kR~~eik~l~ 39 (128)
||+.-|.|.-+|.-.|+..|.+-...|-
T Consensus 6 ~keMTeseq~evkt~L~~aRk~~gR~LT 33 (87)
T PF11656_consen 6 LKEMTESEQREVKTLLDQARKNLGRELT 33 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCccc
Confidence 5899999999999999999998887765
No 7
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=39.32 E-value=43 Score=24.48 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10569 3 TSQSNQMKTLRVLLEKETEEVMKRLQT 29 (128)
Q Consensus 3 ~~q~~Q~KkLKe~~EkEkkEl~k~L~~ 29 (128)
.-+..||++||+.++.|+....+.|+.
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999998877666665553
No 8
>KOG1318|consensus
Probab=39.24 E-value=1.9e+02 Score=26.13 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q psy10569 17 EKETEEVMKRLQTKRRED----VKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEK------KKEELERQ 86 (128)
Q Consensus 17 EkEkkEl~k~L~~kR~~e----ik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~k------r~e~L~~~ 86 (128)
|+.+++-=+...|.|++- ||+|++. -+|--.+-|+-. --.....+|.+|+.|.+...+ +++.|+..
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~l---iP~~~~~~~~~n-KgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQL---IPKCNSEDMKSN-KGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHh---CCCCCcchhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 456777778888888865 4566621 111112233433 456677889999999887774 56677777
Q ss_pred HHHHHHHhHHHHHhH
Q psy10569 87 HAHVRQMFDEEKART 101 (128)
Q Consensus 87 h~ev~q~i~eer~k~ 101 (128)
-..+++++++-...+
T Consensus 306 n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 306 NQELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777877777755533
No 9
>PRK11677 hypothetical protein; Provisional
Probab=35.34 E-value=1.3e+02 Score=22.94 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHhhc
Q psy10569 62 VEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYE 110 (128)
Q Consensus 62 V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~eer~k~~~~l~~e~e 110 (128)
...++.....|+..-++.+.+|.....+|-.+|.. =+.+-..|.+.|.
T Consensus 24 ~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~-TA~Ll~~L~~~Y~ 71 (134)
T PRK11677 24 GNRKLRQQQALQYELEKNKAELEEYRQELVSHFAR-SAELLDTMAKDYR 71 (134)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444555666666666666666666666666653 3444444555444
No 10
>PHA02148 hypothetical protein
Probab=34.56 E-value=1.7e+02 Score=21.87 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy10569 53 MKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKAR 100 (128)
Q Consensus 53 ~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~eer~k 100 (128)
.--||=+..=++....-.+|++.-++|+.+|+++-..|+...+-|-.+
T Consensus 34 ~A~E~FK~iE~RIA~D~~~L~~~A~~R~NEL~~HE~Air~~M~~HS~~ 81 (110)
T PHA02148 34 EAFELFKKIEERIAHDQTRLEELAKSRENELRRHEAAIRLAMDSHSIK 81 (110)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666677777788889999999999999999999998888776554
No 11
>PRK10515 hypothetical protein; Provisional
Probab=34.22 E-value=83 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10569 12 LRVLLEKETEEVMKRLQTKRREDVKKLL 39 (128)
Q Consensus 12 LKe~~EkEkkEl~k~L~~kR~~eik~l~ 39 (128)
||+.-|.|.-+|.-.|+..|.+-...|.
T Consensus 8 ~keMTEseqrevkt~L~~aR~~~gR~LT 35 (90)
T PRK10515 8 QKEMTEREQRELKTLLDRARIAHGRPLT 35 (90)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCccc
Confidence 5899999999999999999999888865
No 12
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.90 E-value=4e+02 Score=24.65 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10569 19 ETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDE 96 (128)
Q Consensus 19 EkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~e 96 (128)
+++++++++..-....|+..+ .-.+.+.+++..+.|+ +--.+.+..|......-.+.+..+..++.+.-.+
T Consensus 192 ~~~~yk~~v~~i~~~~ik~p~--~i~~~~~e~d~lk~e~-----~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 192 DLEEYKKRLEAIKKKDIKNPL--ELQKIKEEFDKLKKEG-----KADKQKIKSAKNDLQNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred hHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHh
Confidence 445555555555555555443 2334455555555555 3344555555566666666666666666554444
No 13
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.00 E-value=5.8e+02 Score=24.24 Aligned_cols=91 Identities=26% Similarity=0.259 Sum_probs=55.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy10569 7 NQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDK--------TTHREKDELVRMKREIA--SAMVEKGVQERVRLTQIY 76 (128)
Q Consensus 7 ~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~--------a~~kDKdel~r~KrEi~--~~~V~~gV~e~~rLe~a~ 76 (128)
+=|++|+.-|+. ++|--+-|+..+.+=-++|-+. .-.-++.+|.|...=|+ +..+.++|.++.++-++-
T Consensus 330 g~l~kl~~eie~-kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~ 408 (622)
T COG5185 330 GKLEKLKSEIEL-KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGI 408 (622)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHH
Confidence 346777777774 2233333444433322222110 12245555544444333 356788999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy10569 77 EKKKEELERQHAHVRQMFDEEK 98 (128)
Q Consensus 77 ~kr~e~L~~~h~ev~q~i~eer 98 (128)
-+.-+++..++..+.+.|.--+
T Consensus 409 ~~slek~~~~~~sl~~~i~~~~ 430 (622)
T COG5185 409 FKSLEKTLRQYDSLIQNITRSR 430 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcccH
Confidence 8999999999999999887643
No 14
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.33 E-value=2.2e+02 Score=19.09 Aligned_cols=6 Identities=0% Similarity=0.623 Sum_probs=2.1
Q ss_pred HHhHHH
Q psy10569 92 QMFDEE 97 (128)
Q Consensus 92 q~i~ee 97 (128)
..|...
T Consensus 75 ~~l~~q 80 (127)
T smart00502 75 KVLEQQ 80 (127)
T ss_pred HHHHHH
Confidence 333333
No 15
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.89 E-value=3e+02 Score=19.88 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy10569 73 TQIYEKKKEELERQHAHVRQMFDEEKART 101 (128)
Q Consensus 73 e~a~~kr~e~L~~~h~ev~q~i~eer~k~ 101 (128)
...+...+..+......+...|...-...
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~i~~~i~~~ 121 (158)
T PF03938_consen 93 QQFQQQAQQQLQQEEQELLQPIQKKINKA 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544433
No 16
>KOG0163|consensus
Probab=21.96 E-value=8.5e+02 Score=24.79 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 27 LQTKRREDVKKLLDKT-THREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQ 92 (128)
Q Consensus 27 L~~kR~~eik~l~~~a-~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q 92 (128)
-+..|...|.+|+..- +.|+-++-+|.. |+..+..+.-....+++++.+.+++++-+.+...-.|
T Consensus 921 ~e~er~rk~qE~~E~ER~rrEaeek~rre-~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q 986 (1259)
T KOG0163|consen 921 EELERLRKIQELAEAERKRREAEEKRRRE-EEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQ 986 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3446666777777322 223333333332 2333344444556677888888887766555444333
No 17
>KOG3091|consensus
Probab=21.35 E-value=6.6e+02 Score=23.49 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHhhc
Q psy10569 42 TTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYE 110 (128)
Q Consensus 42 a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~eer~k~~~~l~~e~e 110 (128)
++.|-.+-=.|++|=+..-+|-+.+.. +-..-.|+|..+.+.+++++... ..+++.|+..++
T Consensus 381 ~k~r~~~Ls~RiLRv~ikqeilr~~G~------~L~~~EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e 442 (508)
T KOG3091|consen 381 AKNRHVELSHRILRVMIKQEILRKRGY------ALTPDEEELRAKLDTLLAQLNAP-NQLKARLDELYE 442 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC------cCCccHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHH
Confidence 455555544677776666666555554 44556788999999999988886 666777766665
Done!