Query psy10569
Match_columns 128
No_of_seqs 32 out of 34
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:45:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jad_A PLC-beta, phospholipase 99.9 1.8E-23 6E-28 170.6 13.9 115 2-118 118-232 (251)
2 3lay_A Zinc resistance-associa 65.8 41 0.0014 25.4 10.7 46 3-50 70-115 (175)
3 2dfs_A Myosin-5A; myosin-V, in 51.3 1.6E+02 0.0055 27.7 12.7 24 61-84 999-1022(1080)
4 3nmd_A CGMP dependent protein 49.1 56 0.0019 21.8 5.9 44 64-107 16-65 (72)
5 3ghg_A Fibrinogen alpha chain; 42.6 1.4E+02 0.0048 26.8 9.1 80 11-97 50-129 (562)
6 4ath_A MITF, microphthalmia-as 40.9 84 0.0029 21.4 6.6 44 59-102 31-80 (83)
7 3mq7_A Bone marrow stromal ant 40.1 92 0.0031 22.8 6.3 18 61-78 72-89 (121)
8 3vp9_A General transcriptional 36.3 40 0.0014 23.5 3.7 41 62-106 45-85 (92)
9 1gmj_A ATPase inhibitor; coile 35.2 62 0.0021 22.2 4.5 35 3-38 36-77 (84)
10 3oja_B Anopheles plasmodium-re 29.2 2.4E+02 0.0083 23.2 11.8 14 44-57 501-514 (597)
No 1
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=99.90 E-value=1.8e-23 Score=170.56 Aligned_cols=115 Identities=22% Similarity=0.368 Sum_probs=108.6
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 2 KTSQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKE 81 (128)
Q Consensus 2 ~~~q~~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e 81 (128)
..||++|||+|++.||+|++||++.++++|.+.|+++. .++++|.+.+|.+||||+++|+++|++|.||+.++.++++
T Consensus 118 ~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~i~e~~--~ktK~K~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qE 195 (251)
T 1jad_A 118 REKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMM--RSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQ 195 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999966 4557777779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHhhccccccccC
Q psy10569 82 ELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFEN 118 (128)
Q Consensus 82 ~L~~~h~ev~q~i~eer~k~~~~l~~e~e~~~~~~~~ 118 (128)
+|...|.++++.|.+++|++++.|+++|+++|++.+-
T Consensus 196 kL~~~h~e~le~l~~e~~k~~~~~~~~~q~~~~~l~~ 232 (251)
T 1jad_A 196 KLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTV 232 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChH
Confidence 9999999999999999999999999999999988754
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=65.81 E-value=41 Score=25.41 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q psy10569 3 TSQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDEL 50 (128)
Q Consensus 3 ~~q~~Q~KkLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel 50 (128)
..|-.|++.|.+....++.++...|..+|.+= ..|.. +.+=|.+.+
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL-~aL~~-a~~~DeakI 115 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEY-NALLT-ASSPDTAKI 115 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHT-SSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-CCCCCHHHH
Confidence 35778888888888889999998888888544 44431 455566663
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.27 E-value=1.6e+02 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 61 MVEKGVQERVRLTQIYEKKKEELE 84 (128)
Q Consensus 61 ~V~~gV~e~~rLe~a~~kr~e~L~ 84 (128)
.+++...+...|++....-+++|+
T Consensus 999 ~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 999 ELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.06 E-value=56 Score=21.82 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHhHHHHHHH
Q psy10569 64 KGVQERVRLTQIYEKKKEELER------QHAHVRQMFDEEKARTKAHILK 107 (128)
Q Consensus 64 ~gV~e~~rLe~a~~kr~e~L~~------~h~ev~q~i~eer~k~~~~l~~ 107 (128)
+|+.++..|+.+..++.++|.. ..+..++..+++...++..|++
T Consensus 16 ~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888777766544 3444455666666666766644
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.55 E-value=1.4e+02 Score=26.79 Aligned_cols=80 Identities=11% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 11 TLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHV 90 (128)
Q Consensus 11 kLKe~~EkEkkEl~k~L~~kR~~eik~l~~~a~~kDKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev 90 (128)
.|+..+++.-..+.++|+.-|. .+..|. +.++|-+..-+.+-|+-+..+. ....+...+..--++|.+++..|
T Consensus 50 rLQglLdkqErDltkrINELKn-qLEdls--KnsKdseqy~k~~~E~Lr~rq~----q~~dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKN-SLFEYQ--KNNKDSHSLTTNIMEILRGDFS----SANNRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTHHH--HHHHHHHHHHHHHHHTTSSHHH----HHHHHHHHHHHTTHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHH-HHHHHH--hhchhHHHHHHHHHHHHHHHHH----hhhccchhHHHHHHHHHHHHHHH
Confidence 3677788887888888876653 335554 6667766654444433322222 12233344444444555555544
Q ss_pred HHHhHHH
Q psy10569 91 RQMFDEE 97 (128)
Q Consensus 91 ~q~i~ee 97 (128)
...|+..
T Consensus 123 KekVdnQ 129 (562)
T 3ghg_A 123 KRKVIEK 129 (562)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 6
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=40.89 E-value=84 Score=21.40 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHhHH
Q psy10569 59 SAMVEKGVQERVRLTQIYEKKKEELER------QHAHVRQMFDEEKARTK 102 (128)
Q Consensus 59 ~~~V~~gV~e~~rLe~a~~kr~e~L~~------~h~ev~q~i~eer~k~~ 102 (128)
-+.+..+|.+|+.|.+...+-.+...+ .-..+.-+|.+-...++
T Consensus 31 g~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 31 GTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 356788999999997766554444443 33366666666555443
No 7
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.11 E-value=92 Score=22.76 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10569 61 MVEKGVQERVRLTQIYEK 78 (128)
Q Consensus 61 ~V~~gV~e~~rLe~a~~k 78 (128)
.|++.-.+|..|.+.-..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555554333
No 8
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=36.35 E-value=40 Score=23.46 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy10569 62 VEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHIL 106 (128)
Q Consensus 62 V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~eer~k~~~~l~ 106 (128)
|..=|+|+...-+ .--+|+..|..+++.+++|...++..|+
T Consensus 45 i~~Qi~Emq~Ir~----tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 45 MNQQLAEMQQIRN----TVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555543333 3467999999999999999999998885
No 9
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.22 E-value=62 Score=22.20 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=19.3
Q ss_pred chhHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q psy10569 3 TSQSNQMKTLRVLL-------EKETEEVMKRLQTKRREDVKKL 38 (128)
Q Consensus 3 ~~q~~Q~KkLKe~~-------EkEkkEl~k~L~~kR~~eik~l 38 (128)
.-+..||++||..+ .++.+.+.+.+++ .+..|++|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~r-hk~~i~~l 77 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIER-HKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 34567888888543 3445555555543 33445553
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.20 E-value=2.4e+02 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=6.3
Q ss_pred cchHHHHHHHHHHH
Q psy10569 44 HREKDELVRMKREI 57 (128)
Q Consensus 44 ~kDKdel~r~KrEi 57 (128)
.++++.+.+....+
T Consensus 501 ~~~~~~l~~~~~~~ 514 (597)
T 3oja_B 501 ARSSDNLNKVFTHL 514 (597)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34445554444433
Done!