Query psy10569
Match_columns 128
No_of_seqs 32 out of 34
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:45:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlwa_ a.38.1.1 (A:) Mad prot 54.7 14 0.001 22.1 5.3 36 59-94 39-77 (79)
2 d2azea1 e.63.1.1 (A:199-346) T 9.6 2.7E+02 0.02 19.0 5.4 30 67-96 2-31 (148)
3 d1nkpb_ a.38.1.1 (B:) Max prot 8.5 2E+02 0.014 16.6 5.9 17 59-75 39-55 (83)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 8.2 2.1E+02 0.015 16.6 5.9 34 59-96 42-75 (80)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 8.2 2.7E+02 0.02 17.9 5.7 33 73-105 86-118 (129)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 6.8 2.5E+02 0.018 16.3 6.5 16 60-75 45-60 (88)
7 d1zt2b1 a.262.1.1 (B:3-209) DN 6.6 2.1E+02 0.015 19.7 3.6 28 43-70 166-193 (207)
8 d1pq4a_ c.92.2.2 (A:) Periplas 4.5 5E+02 0.037 17.7 4.6 50 71-120 151-200 (289)
9 d1x9ba_ a.10.2.1 (A:) Hypothet 4.3 3.6E+02 0.027 15.3 4.4 32 46-77 17-48 (53)
10 d1b0ba_ a.1.1.2 (A:) Hemoglobi 4.3 2.3E+02 0.017 17.3 2.3 24 45-68 80-103 (142)
No 1
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.70 E-value=14 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy10569 59 SAMVEKGVQERVRLTQIY---EKKKEELERQHAHVRQMF 94 (128)
Q Consensus 59 ~~~V~~gV~e~~rLe~a~---~kr~e~L~~~h~ev~q~i 94 (128)
-+.+..+|.+|..|...- ....+.|..++..+++.|
T Consensus 39 ~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999887543 333455555555555444
No 2
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.56 E-value=2.7e+02 Score=18.96 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10569 67 QERVRLTQIYEKKKEELERQHAHVRQMFDE 96 (128)
Q Consensus 67 ~e~~rLe~a~~kr~e~L~~~h~ev~q~i~e 96 (128)
++|..|+....++.++..++...+..-+.-
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~LqeLi~Q 31 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQELILQ 31 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888887776554444
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.48 E-value=2e+02 Score=16.63 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10569 59 SAMVEKGVQERVRLTQI 75 (128)
Q Consensus 59 ~~~V~~gV~e~~rLe~a 75 (128)
-+.+..+|.+|..|.+.
T Consensus 39 ~~iL~~A~~yI~~L~~~ 55 (83)
T d1nkpb_ 39 AQILDKATEYIQYMRRK 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34678888999877543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=2.1e+02 Score=16.58 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10569 59 SAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDE 96 (128)
Q Consensus 59 ~~~V~~gV~e~~rLe~a~~kr~e~L~~~h~ev~q~i~e 96 (128)
.+.+..+|.+|..|... .+.|......+...+..
T Consensus 42 ~~iL~~a~~yI~~L~~~----~~~L~~e~~~lk~~~~~ 75 (80)
T d1am9a_ 42 SAVLRKAIDYIRFLQHS----NQKLKQENLSLRTAVHK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 35789999999988754 34566666666554443
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.16 E-value=2.7e+02 Score=17.95 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy10569 73 TQIYEKKKEELERQHAHVRQMFDEEKARTKAHI 105 (128)
Q Consensus 73 e~a~~kr~e~L~~~h~ev~q~i~eer~k~~~~l 105 (128)
++.|.++..+|+..+.++-+++.+-......-|
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll 118 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888777766554444333
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.84 E-value=2.5e+02 Score=16.34 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10569 60 AMVEKGVQERVRLTQI 75 (128)
Q Consensus 60 ~~V~~gV~e~~rLe~a 75 (128)
+.+..+|.+|..|...
T Consensus 45 ~iL~~A~~yI~~L~~~ 60 (88)
T d1nkpa_ 45 VILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788889999888764
No 7
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.64 E-value=2.1e+02 Score=19.70 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 43 THREKDELVRMKREIASAMVEKGVQERV 70 (128)
Q Consensus 43 ~~kDKdel~r~KrEi~~~~V~~gV~e~~ 70 (128)
+.=+++++.|+.+|--+.+|.+++....
T Consensus 166 V~l~~ee~~RLlrE~i~~~I~~~i~~~~ 193 (207)
T d1zt2b1 166 VYLDKNQLIGLIAESIKSKIVEMIRPLN 193 (207)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHhccccC
Confidence 3446889999999999999999987653
No 8
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=4.49 E-value=5e+02 Score=17.73 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHhhccccccccCCC
Q psy10569 71 RLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENEP 120 (128)
Q Consensus 71 rLe~a~~kr~e~L~~~h~ev~q~i~eer~k~~~~l~~e~e~~~~~~~~~~ 120 (128)
+|-++.+...+......+.....|.+........+..-.+..+-.++..|
T Consensus 151 ~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~v~~H~a~ 200 (289)
T d1pq4a_ 151 ELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSW 200 (289)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCC
T ss_pred HHHHhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHhccccCCceeeecccH
Confidence 44455555555555566666555555555555666544445556666554
No 9
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=4.26 E-value=3.6e+02 Score=15.29 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 46 EKDELVRMKREIASAMVEKGVQERVRLTQIYE 77 (128)
Q Consensus 46 DKdel~r~KrEi~~~~V~~gV~e~~rLe~a~~ 77 (128)
.|....+-.+|+-+=.+.-|-.+..+|+++.+
T Consensus 17 SK~~FV~NL~ELE~la~kLGk~Y~~qLe~~K~ 48 (53)
T d1x9ba_ 17 SKSVFVRNLNELEALAVRLGKSYRIQLDQAKE 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35556666666666666666677777766654
No 10
>d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 29163]}
Probab=4.25 E-value=2.3e+02 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy10569 45 REKDELVRMKREIASAMVEKGVQE 68 (128)
Q Consensus 45 kDKdel~r~KrEi~~~~V~~gV~e 68 (128)
-|.+.+....+++.+.|+..||..
T Consensus 80 dd~~~l~~~l~~lg~~H~~~gv~~ 103 (142)
T d1b0ba_ 80 DNAGALEGQCKTFAANHKARGISA 103 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CchhHHHHHHHHHHHhhhccCCCH
Confidence 578888899999999999999854
Done!