RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10569
(128 letters)
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 34.0 bits (78), Expect = 0.010
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 4 SQSNQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVE 63
Q+ Q+K L+ + EKE +E+ K+L KR E +++ +EK R K EI + ++
Sbjct: 49 KQAAQLKKLKEISEKEKKELKKKLDRKRLERIQE----AKTKEKHAQEREKTEINRSHIQ 104
Query: 64 KGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENE 119
+ VQ RL + ++++E+LE + A + Q EE+ + +A EYE K + E
Sbjct: 105 EVVQSIKRLEEAQKRRQEKLEEKQAEILQQIQEEEPKLQAEATAEYEAKLKRLPQE 160
>gnl|CDD|236218 PRK08284, PRK08284, precorrin 6A synthase; Provisional.
Length = 253
Score = 31.0 bits (71), Expect = 0.13
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 20 TEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASA--------MVEKGVQERVR 71
T + +K L R DV + DK +KD+LV ++REI + +VE R R
Sbjct: 18 TLQAIKAL---NRADVFFVPDKG--ADKDDLVALRREICARHITGPGYRVVEFDDPVRDR 72
Query: 72 LTQIYEKKKEELERQHAHV-RQMFDEE 97
Y ++ A + ++ EE
Sbjct: 73 APDDYRAAVDDWHAARAALYERLIAEE 99
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 30.5 bits (68), Expect = 0.26
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 5 QSNQMKTLRV-LLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVE 63
++ K L + +LEK+ ++RL+ + RE +++ + RE+ E R++RE +E
Sbjct: 443 ENAHRKALEMKILEKKR---IERLEREERERLERERMERIERERLERERLERE----RLE 495
Query: 64 KGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKFS 114
+ ER RL ++ ++ + LER EKAR ++ LK E S
Sbjct: 496 RDRLERDRLDRLERERVDRLERDRL--------EKARRNSYFLKGMENGLS 538
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 21 EEVMKRLQTKRREDVKKLLDKTTHREKDELVRM-KREIASAMVEKGVQE 68
E ++L+ R + LL + +EL A+++V + ++
Sbjct: 118 AETARKLRRDGRRSNRALLRALLTADLEELREFLAGTPAASLVSEEAEK 166
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones
can be reversibly acetylated on several lysine
residues. Regulation of transcription is caused in part
by this mechanism. Histone deacetylases catalyze the
removal of the acetyl group. Histone deacetylases are
related to other proteins.
Length = 300
Score = 27.2 bits (61), Expect = 2.2
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 42 TTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQH--AHVRQM 93
H E E R++ I + E G+ +R+ +EEL H +V +
Sbjct: 7 LGHPENPE--RLEA-ILELLKESGLLDRLEFIAPRPATEEELLLVHSPEYVEFL 57
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 27.3 bits (61), Expect = 2.3
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 9 MKTLRVLLE---KETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKG 65
+K+ R++LE E +R RR +++ ++++ E D
Sbjct: 524 LKSGRLVLESLGLGPYEARERADRFRRHNLQ-MVEEMAPHEND---------TKKRAAVA 573
Query: 66 VQERVRLTQIYEKKKEELERQHAHVRQMFDEEK 98
Q L++I + +E L H Q +E K
Sbjct: 574 KQTSAMLSEIITEDREHLSLIQRHGWQGTEEGK 606
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 75 IYEKKKEELERQHAHVRQMFDEEKAR 100
IY++ + EL+R+ A+ + +EEK +
Sbjct: 250 IYDEVRAELKRRGAYF--LNEEEKEK 273
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.1 bits (61), Expect = 2.6
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 21 EEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREI---ASAMVEKGVQERVRLTQIYE 77
E++ L+ RE +K + E ++K E+ + E+ + + +
Sbjct: 519 NELIASLEELERELEQKA--EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
Query: 78 KK----KEELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENEPLPEVTEPQ 128
+ K+E + +RQ+ A KAH L E + N+ + + +
Sbjct: 577 QAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRL----NKANEKKEKKK 627
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 27.3 bits (61), Expect = 2.7
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 46 EKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTK-AH 104
+K+EL +RE K + +L + EKKK+ELE+ EKA+ A
Sbjct: 549 DKEEL---QREKEEKEALKEQKRLRKLKKQEEKKKKELEKL----------EKAKIPPAE 595
Query: 105 ILKEYEGKFSKFENEPLPEVTE 126
K E K+S F+ LP
Sbjct: 596 FFKRQEDKYSAFDETGLPTHDA 617
>gnl|CDD|182185 PRK09989, PRK09989, hypothetical protein; Provisional.
Length = 258
Score = 26.9 bits (59), Expect = 2.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 81 EELERQHAHVR-QMFDEEKARTK-AHILKEYEGKFSKFENEPLPEVTEP 127
EE+ R + ++ F +K H++++Y GK++ + LP+ EP
Sbjct: 166 EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEP 214
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 361
Score = 26.8 bits (60), Expect = 3.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 32 REDVKKLLDKTTHREKDE-----LVRMKREIASAMVEKGVQERVRLTQIYEKKKEE 82
+ D +K+LD H E + + R+ AS V E R+ EK
Sbjct: 124 KMDYEKMLDY--HIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANP 177
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 26.8 bits (60), Expect = 3.7
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 7 NQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGV 66
++K L L++ EE+ K +KKLL K + + +L KRE ++E
Sbjct: 334 EELKELEEELKELEEELEK---------IKKLLKKLPKKARGQLPPEKREQLEKLLETKE 384
Query: 67 QERVRLTQIYEKK---KEELERQHAH 89
+ L ++ E+ KEELE ++
Sbjct: 385 KLSEELEELEEELKELKEELESLYSE 410
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 26.8 bits (60), Expect = 3.9
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 43 THREKDELVRMKREIASAMVEKGVQERV---RLTQIYEKKKEELERQHAHVRQ 92
T +++ EL ++ + A+ E QE V L E+K++ELE Q +++
Sbjct: 153 TLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQE 205
>gnl|CDD|236772 PRK10833, PRK10833, putative assembly protein; Provisional.
Length = 617
Score = 26.4 bits (59), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 15 LLEKETE-EVMKRL--------QTKRREDVKKLLDK 41
LL K + E KRL ++ +DVKKLLDK
Sbjct: 581 LLRKHLQDEAKKRLNDWAERNKDSRNGKDVKKLLDK 616
>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 26.3 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 27 LQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKG-VQERVR 71
L T R ED + +LD+ KDE R+ +E+ + ++ + ER+
Sbjct: 81 LWT-RYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIA 125
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 26.2 bits (58), Expect = 5.1
Identities = 14/101 (13%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 8 QMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQ 67
+K ++ ++ R+ + E +++ ++ K L + + +++SA + +
Sbjct: 61 LLKLEVARKKERLNQIRARISQLKEE-IEQKRERIEEL-KRALAQRRSDLSSASYQL-EK 117
Query: 68 ERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKE 108
R EK ++E++R + + + A ++ + +E
Sbjct: 118 RRASQL---EKLQDEIKRTRSKLNAL-HSLLAEKRSFLCRE 154
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 26.3 bits (59), Expect = 5.3
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 8 QMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDK--TTHREKDELVRMKREIASAMVEKG 65
++ LR EKE E +R + ++ E K+LL K R+ + L + + E+ EK
Sbjct: 65 EIHKLRNEFEKELRE--RRNELQKLE--KRLLQKEENLDRKLELLEKREEEL-----EKK 115
Query: 66 VQERVRLTQIYEKKKEELERQHAHVRQMFD------------------EEKART-KAHIL 106
+E + Q EKK+EELE Q + EE+AR A ++
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLI 175
Query: 107 KEYE 110
KE E
Sbjct: 176 KEIE 179
>gnl|CDD|192933 pfam12076, Wax2_C, WAX2 C-terminal domain. This presumed domain
is functionally uncharacterized. This domain is found
in eukaryotes. This domain is about 170 amino acids in
length. This domain is found associated with pfam04116.
This domain has a conserved LEGW sequence motif. This
region has similarity to short chain dehydrogenases.
Length = 164
Score = 25.8 bits (57), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 55 REIASAMVEKGVQERVRLTQIYEKKKEELERQHAH 89
R IA A+ +KGV+ + + YEK K E +
Sbjct: 12 RAIALALCKKGVKVVMLSKEEYEKLKPEAPPEVQD 46
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 26.6 bits (58), Expect = 5.5
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 18 KETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYE 77
K+ +E+ K + K+ E+ KK + E + K E A E ++E ++L + +
Sbjct: 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
Query: 78 KKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENEPLPEVTE 126
K K E + E+A+ KA LK+ E + K E E E
Sbjct: 1606 KMKAE---------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 25.9 bits (57), Expect = 7.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 MKTSQSNQMKTLRVLLEKETEEV 23
M + Q N++++LR+ LEK EE
Sbjct: 462 MGSGQPNRVESLRIALEKAGEEA 484
>gnl|CDD|131487 TIGR02434, CobF, precorrin-6A synthase (deacetylating). In the
aerobic cobalamin biosythesis pathway, four enzymes are
involved in the conversion of precorrin-3A to
precorrin-6A. The first of the four steps is carried
out by EC 1.14.13.83, precorrin-3B synthase (CobG),
yielding precorrin-3B as the product. This is followed
by three methylation reactions, which introduce a
methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM;
EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the
macrocycle, giving rise to precorrin-4, precorrin-5 and
precorrin-6A, respectively. This model identifies CobF
in High GC gram positive, alphaproteobacteria and
pseudomonas-related species.
Length = 249
Score = 25.4 bits (56), Expect = 8.8
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 31 RREDVKKLLDKTTHREKDELVRMKREIASA--------MVEKGVQERVRLTQIYEKKKEE 82
DV +LDK +K +LV ++REI + +VE ER Y ++
Sbjct: 25 NHADVFFVLDKGE--QKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVDD 82
Query: 83 LERQHAH 89
Q A
Sbjct: 83 WHAQRAD 89
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 25.7 bits (56), Expect = 9.6
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 52 RMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEG 111
R+ R A K + RLT+++ K ++E + A V +E+A+ I +
Sbjct: 788 RISR-GAGVGKTKEKKNLGRLTRLWVKLEQERQVDSAKVGPKSTKEEAKRIGKITVLWL- 845
Query: 112 KFSKFENEPLPEVTEPQ 128
+ FE P P + +
Sbjct: 846 ESRMFEPIPFPPLRYKE 862
>gnl|CDD|236884 PRK11234, nfrB, bacteriophage N4 adsorption protein B; Provisional.
Length = 727
Score = 25.5 bits (56), Expect = 9.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 40 DKTTHR--EKDELVRMKREIASAMVEKGVQERVRLTQ 74
DKTTH R R + ++E GV +L
Sbjct: 465 DKTTHDFPSVTGDTRSLRPLGQILLENGVITEEQLDT 501
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.323
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,347,018
Number of extensions: 583847
Number of successful extensions: 1285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 269
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)