RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10569
(128 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.039
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 2 KTSQSNQMKT-----LRVLLEKETEEVMKRLQTKRREDVK---KLL-----DKTTHREKD 48
K +++ T L VL E ++ RL + LL D
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 49 ELVRMKREIASAMVEKGVQE-RVRLTQIYEKKKEELERQ---HAHVRQMFDEEKARTKAH 104
+ ++ + ++VEK +E + + IY + K +LE + H + ++ K
Sbjct: 407 VVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 105 ILKEYE 110
++ Y
Sbjct: 464 LIPPYL 469
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 0.054
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 1 MKTSQSNQMKTLRVLLEKETEEVM--KRLQTKRREDVKKL------LDKTTHREKDELVR 52
+K + + L V L+KE + ++++ K + L L K +L +
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 53 MKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKAR 100
+ E+ +A+ +++ KK ELE + +++ + EKA
Sbjct: 1093 KEEELQAALAR--LEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Score = 26.7 bits (59), Expect = 2.9
Identities = 14/82 (17%), Positives = 37/82 (45%)
Query: 18 KETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYE 77
+ E LQ K + + + + R + + + E +E ++E +Q +
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 78 KKKEELERQHAHVRQMFDEEKA 99
+K+++++Q + + +EE+A
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEA 969
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.49
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 30 KRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAH 89
K RE+ +K L +E D ++ + EK ++ L + +++ E++E+ +
Sbjct: 89 KWREEQRKRL-----QELDAASKVMEQ---EWREKAKKD---LEEWNQRQSEQVEKNKIN 137
Query: 90 VRQMFDEEKA 99
R +KA
Sbjct: 138 NR---IADKA 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.2 bits (63), Expect = 0.92
Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 7 NQMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGV 66
+ K L + LE + ++ +++ + +E K LL+K + E ++ S + +
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKE-YKSLLEKMNNLEI-TYSTETEKLRSD--VERL 972
Query: 67 QERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKA 103
+ + + L+ + A +R+ + + K
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 25.8 bits (57), Expect = 5.3
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 2 KTSQSNQMKTLRVLLEKETEEVMKRLQTKRR-EDVKKLLDKTTHREKDELVRMKREIAS- 59
++++ ++++ L EE ++ L K H+ + E ++
Sbjct: 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 60 -AMVEKGVQERVRLTQIYEKKKEELERQ-HAHVRQMFDEEKARTKAHILK 107
E+ V E + + +KEEL R+ H +++ + + + +
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 25.5 bits (56), Expect = 8.0
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 8 QMKTLRVLLEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQ 67
E +Q R + ++ T + L R + + K ++
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910
Query: 68 ERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILKEYEGKFSKFENE 119
R + Y+K LE + +++ DE+ K K + E
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKE-----YKSLLEKMNNLEIT 957
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 27.9 bits (61), Expect = 1.1
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 16 LEKETEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQ 67
LE+ E+ +R + RE + + +E L++ + + Q
Sbjct: 53 LEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQ 104
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 26.4 bits (59), Expect = 3.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 46 EKDELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKART-KAH 104
++DE+V +++I++ V+ QE R K +LE + F EEK + H
Sbjct: 20 KEDEIVIDRKKISADQVD---QEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGH 76
Query: 105 IL 106
I+
Sbjct: 77 IM 78
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 26.0 bits (58), Expect = 3.8
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 35 VKKLLDKTTHR-------EKDELVRMKREIASAMVEKGVQERVR 71
V+K+ T + +K +VR ++ A E+ + E V+
Sbjct: 36 VRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVK 79
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 26.0 bits (58), Expect = 4.2
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 20 TEEVMKRLQTKRREDVKKLLDKTTHREKDELVRMKREIASAMVEKGVQERVRLTQIYEKK 79
TEE+++ ++ R+D+K+ + K++LV M + + + + E K
Sbjct: 49 TEEILQEVRASGRKDLKEAV-------KEKLVGMLEPDERRATLRKLGFNPQKPKPVEPK 101
>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}
Length = 335
Score = 25.1 bits (54), Expect = 8.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 55 REIASAMVEKGVQERVRLTQIYEKKKEELERQ 86
+I + ++ YEKK EEL+ +
Sbjct: 286 EKIMVNLKNAEIEPDDYFMSRYEKKLEELKAK 317
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 24.9 bits (55), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 91 RQMFDEEKARTKAHIL 106
R +F+ KAR +AHIL
Sbjct: 335 RTIFELRKARDRAHIL 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.323
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,834,507
Number of extensions: 104927
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 112
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.1 bits)