RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10569
         (128 letters)



>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 24.7 bits (54), Expect = 1.0
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 33 EDVKKLLDKTTHREKDE 49
              K L+ TT  +KD 
Sbjct: 3  AKCGKSLESTTLADKDG 19


>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 65

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 33 EDVKKLLDKTTHREKDE 49
             KK LD TT     +
Sbjct: 3  MVCKKNLDSTTVAVHGD 19


>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 48

 Score = 23.9 bits (52), Expect = 2.3
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 31 RREDVKKLLDKTTHREKDE 49
          + E   K L    H E + 
Sbjct: 1  KCEKCGKTLTSGGHAEHEG 19


>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
           tuberosum) [TaxId: 4113]}
          Length = 523

 Score = 25.1 bits (54), Expect = 3.2
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 48  DELVRMKREIASAMVEKGVQERVRLTQIYEKKKEELERQHAHVRQMFDEEKARTKAHILK 107
           +ELV         + E    +RV  + I E K   + +    +     E K + +     
Sbjct: 99  EELVDDGLLKMEELPEPLPTDRVNYSTISEIKDPLITKAAKRLLSSEGELKDQLENFRRD 158

Query: 108 EYEGKF 113
                +
Sbjct: 159 PNISSW 164


>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 24.3 bits (53), Expect = 4.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 9   MKTLRVLLEKETEEVMKRLQTKRREDVKKLLDK 41
           MK+++  LE++  E +K   T   E +K +L  
Sbjct: 96  MKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.323 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,926
Number of extensions: 19776
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 46
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.7 bits)