RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10571
(240 letters)
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 170 bits (431), Expect = 9e-49
Identities = 101/204 (49%), Positives = 129/204 (63%)
Query: 30 FWNECVPMDDDWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTSA 89
+ S D V D EDE E+ + KP+ D+ T++
Sbjct: 521 GEEVGLEKPSLEPQKSLGDEGLNRGPYVLGPADREDEEEDEEEEEQTDPKKPTTDEGTAS 580
Query: 90 KETEAGAEISALVNYVQPIHFISFENAEKKNRHYEMSSFDEKQATILLKERPIEFVNYNK 149
E A E+S LVNY++P+ F SFE A K+N+ +EMSSF E +A L + P+EFV YNK
Sbjct: 581 SEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEYNK 640
Query: 150 HQLSRVYPAGTRFDSSNFMPQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLK 209
QLSR+YP GTR DSSN+MPQ+FWN GCQLVALN+QT+D+AMQLN G+FEYN R GYLLK
Sbjct: 641 QQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLK 700
Query: 210 PEFMRRQDRRFDPFAESTYNNVLP 233
PEFMRR D+ FDPF E + ++
Sbjct: 701 PEFMRRPDKSFDPFTEVIVDGIVA 724
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 164 bits (415), Expect = 9e-47
Identities = 101/175 (57%), Positives = 132/175 (75%)
Query: 62 DDEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAEISALVNYVQPIHFISFENAEKKNR 121
D++E AG D + + K D T+AKE EA E+SALVNY+QP+HF +FE A+KK+R
Sbjct: 478 GDDEELAGLTDEEKKKIEKEKKDAGTAAKEAEAAEEMSALVNYIQPVHFTTFEQAQKKDR 537
Query: 122 HYEMSSFDEKQATILLKERPIEFVNYNKHQLSRVYPAGTRFDSSNFMPQVFWNAGCQLVA 181
HYEMSS E QA LK+ P +FV+YNK Q++R+YP GTR DSSN++PQ++WNAGCQLVA
Sbjct: 538 HYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVA 597
Query: 182 LNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRRQDRRFDPFAESTYNNVLPILV 236
LN+Q D+AM +N+G+FEYN GYLLKPEFMR+ D+RFDPF EST + V+ +
Sbjct: 598 LNFQCFDIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTI 652
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 160 bits (404), Expect = 3e-45
Identities = 95/197 (48%), Positives = 133/197 (67%), Gaps = 5/197 (2%)
Query: 38 DDDWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAE 97
V + ++G E EE++V ++E E++K K D+ T+ E A E
Sbjct: 487 PSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIK-----KMQSDEGTAGLEVTAYEE 541
Query: 98 ISALVNYVQPIHFISFENAEKKNRHYEMSSFDEKQATILLKERPIEFVNYNKHQLSRVYP 157
+S+LVNY+QP F+SFE + +KNR Y +SSF E +A LL + ++FV+YNK Q+SR+YP
Sbjct: 542 MSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQMSRIYP 601
Query: 158 AGTRFDSSNFMPQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRRQD 217
GTR DSSN+MPQ+FWNAGCQ+VALN+QTMDL MQ NM +FE+N + GYLLK EFMRR D
Sbjct: 602 KGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEFMRRPD 661
Query: 218 RRFDPFAESTYNNVLPI 234
++F+PF+ + V+
Sbjct: 662 KQFNPFSVDRIDVVVAT 678
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 156 bits (396), Expect = 1e-44
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 40 DWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAEIS 99
+ + G + S + + V + + E+S
Sbjct: 302 KILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELS 361
Query: 100 ALVNYVQPIHFISFENAEKKNR-HYEMSSFDEKQATILLKERPIEFVNYNKHQLSRVYPA 158
++ Y + +HF F + + YEM+SF E +A LL+E FV +N LSR+YPA
Sbjct: 362 DMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPA 421
Query: 159 GTRFDSSNFMPQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRRQDR 218
G R DSSN+ P WN GCQ+VALN+QT M + +G F+ N CGY+LKP F+R +
Sbjct: 422 GWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNT 481
Query: 219 RFDPFAESTYNNVLPILV 236
F+ A + P +
Sbjct: 482 TFNSRALTQGPWWRPERL 499
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 5e-05
Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 63/220 (28%)
Query: 71 EDMKLQLEGKPSVDKVTSAKETEAGAE--ISALVNYVQPIHFISFENAEKKNRHYEMSSF 128
+DM + K +D + +K+ +G L++ + + E + N + MS
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 129 -DEKQATILLKERPIEFVN--YN------KHQLSRVYP---------------------- 157
E++ ++ IE + YN K+ +SR+ P
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 158 AGT----------RFDS--SNFMPQVFW-NAGC---------QLVALNYQTMDLAMQLNM 195
G+ ++FW N L L YQ +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS- 217
Query: 196 GIFEYNQRCGYLLKPEFMRRQDRRFDPFAESTYNNVLPIL 235
+ L+ ++ + RR Y N L +L
Sbjct: 218 -----DHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVL 250
Score = 27.5 bits (60), Expect = 5.0
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 14/58 (24%)
Query: 4 EREDHRIVGRFESRLCDGFNNVLGLDFWNECVPMDDD---WFVG----SSQDGEEEEE 54
E HR + D +N D + P D +G + + E
Sbjct: 442 EYALHR-------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.011
Identities = 36/193 (18%), Positives = 54/193 (27%), Gaps = 70/193 (36%)
Query: 78 EGKPS----------------VDKVTSAKETEAGAEISALVNYVQPIHFI------SFEN 115
EG PS V+K S EIS LVN + + S
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVN--GAKNLVVSGPPQSLYG 388
Query: 116 AEKKNRHYEMSSFDEKQATILLKERPIEFVN--------YNKHQLSRVYPAGTRFDSSNF 167
R + S Q+ I ER ++F N ++ H L PA +
Sbjct: 389 LNLTLRKAKAPS-GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV---PASDLINKDLV 444
Query: 168 MPQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRRQDRRFDPFAEST 227
V +NA D+ + + Y+ G D R
Sbjct: 445 KNNVSFNAK-----------DIQIPV------YDTFDG----------SDLR------VL 471
Query: 228 YNNVLPILVPSIF 240
++ +V I
Sbjct: 472 SGSISERIVDCII 484
Score = 33.9 bits (77), Expect = 0.050
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 71/164 (43%)
Query: 45 SSQDGEE------EEEDDVSTS----GDDED--------------EAAGSEDMKLQLEGK 80
+ DG+ +E ++ STS + E A ED+K +G
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS--KGL 1752
Query: 81 PSVDKVTSAKETEAG---AEISALVNYVQPIHFISFENA------------------EKK 119
D AG E +AL + +S E+ E
Sbjct: 1753 IPADATF------AGHSLGEYAALASLAD---VMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 120 NRHYEM---------SSFDEKQATILLKE------RPIEFVNYN 148
+Y M +SF ++ +++ +E VNYN
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 31.8 bits (71), Expect = 0.17
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 26 LGLDFWNECVPMDDDWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDK 85
+G ++ +P DWF G++ + E EE+++ + +DE+E E D
Sbjct: 344 IGEQLKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403
Query: 86 VTSAKE 91
E
Sbjct: 404 FAGRPE 409
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A
{Saccharomyces cerevisiae}
Length = 800
Score = 32.0 bits (73), Expect = 0.19
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 44 GSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKV 86
G S D E EDD + +E Q E +D V
Sbjct: 1 GPSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIV 43
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase,
bifunctional enzyme, hydrolase; HET: BGC; 2.25A
{Uncultured bacterium} PDB: 3fw6_A
Length = 535
Score = 28.7 bits (63), Expect = 2.0
Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 2/143 (1%)
Query: 21 GFNNVLGLDFWNECVPMDDDWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDM-KLQLEG 79
G NN ++ DW+ S + + + +AAG++ M + G
Sbjct: 59 GGNNTSRYNWQLNADNRGADWYFESIGEA-SSVAGERGDTFIANSQAAGAQAMITIPTIG 117
Query: 80 KPSVDKVTSAKETEAGAEISALVNYVQPIHFISFENAEKKNRHYEMSSFDEKQATILLKE 139
+ +K + F N + + T++
Sbjct: 118 WVARLGANRSKLASFSIAKYGAQSGNDWQWFPDAGNGVLTSGQNVTGNNPNDANTLVDST 177
Query: 140 RPIEFVNYNKHQLSRVYPAGTRF 162
+ + Q G R+
Sbjct: 178 FQQGWAQHLVSQWGTAAGGGLRY 200
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 27.4 bits (60), Expect = 3.6
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 40 DWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSED 72
++ + +D E+EE + ++ D ++ GS
Sbjct: 214 KYYAEAQRDLEDEEGESGLSADGDSEDDDGSLG 246
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 27.6 bits (60), Expect = 4.2
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 7/97 (7%)
Query: 3 FEREDHRIVGRFESRLCDGFNNVLGLDFWNECVPMDDDWFVGSSQDGEEEEEDDVSTSGD 62
++ V + E + + + L +P D+++G + E D
Sbjct: 252 IKQLSKHEVAQLEMIIEGDYE--VALTIKERIIPYAVDYYLGIIIESESNSIVS-----D 304
Query: 63 DEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAEIS 99
+ + SE+ + + E
Sbjct: 305 VDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYD 341
>3ge6_A Nitroreductase; structural GENO joint center for structural
genomics, JCSG, protein structu initiative, PSI-2,
oxidoreductase; HET: FMN; 1.85A {Exiguobacterium
sibiricum 255-15}
Length = 212
Score = 26.5 bits (59), Expect = 8.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 106 QPIHFISFENAEKKNRHYEMSSFDEKQAT 134
QP F+ ++ E K ++ F++ Q
Sbjct: 51 QPWRFLVIDSEEGKATLAPLAKFNQVQVE 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,702,380
Number of extensions: 211653
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 20
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.1 bits)