RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10571
         (240 letters)



>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 349

 Score =  200 bits (509), Expect = 8e-64
 Identities = 86/171 (50%), Positives = 117/171 (68%)

Query: 45  SSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAEISALVNY 104
           +      EE  ++     +E+E   S ++  +   K   D+ T+  E  A  E+S+LVNY
Sbjct: 178 APAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNY 237

Query: 105 VQPIHFISFENAEKKNRHYEMSSFDEKQATILLKERPIEFVNYNKHQLSRVYPAGTRFDS 164
           +QP  F+SFE + +KNR Y +SSF E +A  LL +  ++FV+YNK Q+SR+YP GTR DS
Sbjct: 238 IQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQMSRIYPKGTRMDS 297

Query: 165 SNFMPQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRR 215
           SN+MPQ+FWNAGCQ+VALN+QTMDL MQ NM +FE+N + GYLLK EFMRR
Sbjct: 298 SNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEFMRR 348


>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score =  194 bits (495), Expect = 8e-62
 Identities = 67/178 (37%), Positives = 95/178 (53%), Gaps = 5/178 (2%)

Query: 50  EEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTSAKETEAGAEISALVNYVQPIH 109
              E    +T   DE EAA  ED  +    +  V       + +   E+S ++ Y + +H
Sbjct: 150 AGGENGSEATDVSDEVEAAEMEDEAV----RSQVQHKPKEDKLKLVPELSDMIIYCKSVH 205

Query: 110 FISFENAEKKNR-HYEMSSFDEKQATILLKERPIEFVNYNKHQLSRVYPAGTRFDSSNFM 168
           F  F +     +  YEM+SF E +A  LL+E    FV +N   LSR+YPAG R DSSN+ 
Sbjct: 206 FGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYS 265

Query: 169 PQVFWNAGCQLVALNYQTMDLAMQLNMGIFEYNQRCGYLLKPEFMRRQDRRFDPFAES 226
           P   WN GCQ+VALN+QT    M + +G F+ N  CGY+LKP F+R  +  F+  A +
Sbjct: 266 PVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALT 323


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 38 DDDWFVGSSQDGEEEEEDDVSTSGDDEDEAAGSEDMKLQLEGKPSVDKVTS 88
          ++D F G   D  EE+E        +E+     E +      + +  ++T+
Sbjct: 4  NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT 54


>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 179

 Score = 25.4 bits (55), Expect = 5.5
 Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)

Query: 28 LDFWNECVPMDDDWFVGSSQDGEE 51
          +DFW +  P  D WF   +     
Sbjct: 13 VDFWKKAGP--DKWFDKDAAFDNH 34


>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 441

 Score = 25.8 bits (56), Expect = 6.3
 Identities = 4/22 (18%), Positives = 6/22 (27%)

Query: 198 FEYNQRCGYLLKPEFMRRQDRR 219
             Y  RCG  +   +       
Sbjct: 15  GMYLLRCGTSVSATYNGIHYSH 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 906,293
Number of extensions: 40530
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 6
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)