Query psy10572
Match_columns 204
No_of_seqs 160 out of 1939
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:51:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 8.6E-32 1.9E-36 196.4 18.5 179 1-191 24-203 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 9.2E-31 2E-35 194.6 16.7 184 1-193 24-208 (209)
3 PRK13942 protein-L-isoaspartat 100.0 7.9E-28 1.7E-32 180.6 20.0 181 1-192 28-209 (212)
4 PRK13944 protein-L-isoaspartat 100.0 2.2E-27 4.7E-32 177.5 19.9 181 1-190 24-205 (205)
5 TIGR00080 pimt protein-L-isoas 100.0 4.9E-27 1.1E-31 177.0 19.8 184 1-195 29-213 (215)
6 KOG1661|consensus 99.9 4.2E-26 9E-31 164.4 15.2 197 1-198 32-235 (237)
7 PRK00312 pcm protein-L-isoaspa 99.9 1.4E-24 3.1E-29 163.3 19.9 180 1-193 30-210 (212)
8 PRK13943 protein-L-isoaspartat 99.9 1.5E-21 3.4E-26 153.9 19.0 183 1-192 27-216 (322)
9 COG2226 UbiE Methylase involve 99.8 4.1E-18 8.9E-23 128.3 14.0 116 36-159 39-160 (238)
10 PF12847 Methyltransf_18: Meth 99.8 1.1E-17 2.4E-22 113.3 12.0 101 50-155 1-111 (112)
11 PF01209 Ubie_methyltran: ubiE 99.8 4.4E-18 9.5E-23 129.1 10.5 114 39-159 38-157 (233)
12 COG2242 CobL Precorrin-6B meth 99.7 2E-16 4.4E-21 113.5 14.6 126 26-159 12-139 (187)
13 PLN02233 ubiquinone biosynthes 99.7 4.8E-16 1E-20 120.3 16.0 110 48-159 71-186 (261)
14 PF05175 MTS: Methyltransferas 99.7 4.1E-16 8.8E-21 113.3 13.6 114 37-159 20-144 (170)
15 PRK00107 gidB 16S rRNA methylt 99.7 6.1E-16 1.3E-20 113.6 14.4 105 48-159 43-149 (187)
16 TIGR02752 MenG_heptapren 2-hep 99.7 7.1E-16 1.5E-20 117.5 15.3 115 37-158 34-154 (231)
17 PF13847 Methyltransf_31: Meth 99.7 3.4E-16 7.4E-21 111.7 12.6 103 49-157 2-112 (152)
18 TIGR02469 CbiT precorrin-6Y C5 99.7 1.3E-15 2.8E-20 104.7 14.4 115 34-156 5-123 (124)
19 TIGR03533 L3_gln_methyl protei 99.7 1.2E-15 2.5E-20 119.4 14.7 139 15-159 84-255 (284)
20 PRK08287 cobalt-precorrin-6Y C 99.7 7.5E-16 1.6E-20 113.7 12.5 118 29-156 12-132 (187)
21 PLN02244 tocopherol O-methyltr 99.7 2.1E-15 4.5E-20 121.0 14.9 103 49-157 117-225 (340)
22 PRK14966 unknown domain/N5-glu 99.7 9.4E-16 2E-20 123.8 12.7 146 15-168 217-394 (423)
23 PRK14103 trans-aconitate 2-met 99.7 1.8E-15 3.9E-20 116.9 12.0 103 39-157 20-128 (255)
24 PRK11805 N5-glutamine S-adenos 99.7 4.3E-15 9.3E-20 117.3 14.0 145 9-159 87-267 (307)
25 PF08241 Methyltransf_11: Meth 99.6 1.6E-15 3.5E-20 99.2 9.7 89 55-153 1-95 (95)
26 TIGR00138 gidB 16S rRNA methyl 99.6 2.3E-15 4.9E-20 110.3 11.4 103 50-159 42-146 (181)
27 COG4123 Predicted O-methyltran 99.6 1.3E-15 2.8E-20 114.9 9.5 119 48-171 42-186 (248)
28 PRK15001 SAM-dependent 23S rib 99.6 7.9E-15 1.7E-19 118.1 14.1 104 50-157 228-342 (378)
29 COG2890 HemK Methylase of poly 99.6 9.2E-15 2E-19 113.9 13.9 146 15-169 75-252 (280)
30 TIGR03534 RF_mod_PrmC protein- 99.6 4.8E-15 1E-19 114.2 12.2 135 18-159 55-221 (251)
31 COG2813 RsmC 16S RNA G1207 met 99.6 1E-14 2.2E-19 112.3 13.2 112 37-158 147-269 (300)
32 COG4106 Tam Trans-aconitate me 99.6 2E-15 4.3E-20 110.0 8.7 101 48-160 28-134 (257)
33 COG2227 UbiG 2-polyprenyl-3-me 99.6 8.5E-16 1.8E-20 114.2 6.9 102 49-159 58-165 (243)
34 PRK01683 trans-aconitate 2-met 99.6 9.9E-15 2.2E-19 113.0 13.2 99 48-158 29-133 (258)
35 PTZ00098 phosphoethanolamine N 99.6 9.3E-15 2E-19 113.3 13.0 110 37-157 41-158 (263)
36 PRK00377 cbiT cobalt-precorrin 99.6 1.2E-14 2.6E-19 108.2 13.0 123 30-158 22-148 (198)
37 TIGR00536 hemK_fam HemK family 99.6 1.4E-14 3.1E-19 113.5 13.7 142 15-162 77-251 (284)
38 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.1E-14 2.4E-19 112.0 12.8 111 39-155 45-164 (247)
39 PRK11207 tellurite resistance 99.6 1.3E-14 2.9E-19 107.8 12.8 105 39-154 21-133 (197)
40 PRK11873 arsM arsenite S-adeno 99.6 1.4E-14 3.1E-19 113.0 13.5 103 48-155 75-183 (272)
41 PLN02396 hexaprenyldihydroxybe 99.6 7.3E-15 1.6E-19 116.3 11.8 103 50-159 131-239 (322)
42 PRK00121 trmB tRNA (guanine-N( 99.6 6.5E-15 1.4E-19 109.9 10.8 105 49-159 39-160 (202)
43 PF05401 NodS: Nodulation prot 99.6 5.8E-15 1.3E-19 107.0 9.9 127 19-158 13-149 (201)
44 PRK07402 precorrin-6B methylas 99.6 2.3E-14 5.1E-19 106.5 13.5 125 27-159 19-146 (196)
45 PRK11036 putative S-adenosyl-L 99.6 1.2E-14 2.6E-19 112.4 12.0 104 49-159 43-153 (255)
46 PRK10258 biotin biosynthesis p 99.6 1.3E-14 2.8E-19 111.9 11.7 97 50-159 42-144 (251)
47 TIGR03704 PrmC_rel_meth putati 99.6 3.6E-14 7.9E-19 109.1 13.8 143 15-167 49-228 (251)
48 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.3E-14 2.8E-19 107.6 10.8 105 49-159 15-136 (194)
49 PF13659 Methyltransf_26: Meth 99.6 6.8E-15 1.5E-19 100.3 8.4 100 51-156 1-116 (117)
50 COG2230 Cfa Cyclopropane fatty 99.6 1.3E-14 2.9E-19 111.3 10.8 126 48-189 70-203 (283)
51 COG2264 PrmA Ribosomal protein 99.6 1.9E-14 4E-19 111.4 11.6 125 20-155 136-263 (300)
52 TIGR00446 nop2p NOL1/NOP2/sun 99.6 4.4E-14 9.6E-19 109.6 13.2 109 48-161 69-205 (264)
53 PRK01544 bifunctional N5-gluta 99.6 1.6E-14 3.4E-19 121.2 11.4 139 15-159 78-273 (506)
54 TIGR00477 tehB tellurite resis 99.6 4.6E-14 9.9E-19 104.8 12.6 105 39-155 21-133 (195)
55 PRK09489 rsmC 16S ribosomal RN 99.6 5.8E-14 1.3E-18 112.3 14.0 110 38-158 186-306 (342)
56 TIGR00740 methyltransferase, p 99.6 7.5E-14 1.6E-18 106.9 14.2 103 48-156 51-162 (239)
57 PRK15068 tRNA mo(5)U34 methylt 99.6 6.8E-14 1.5E-18 111.3 14.2 101 49-156 121-227 (322)
58 PLN02336 phosphoethanolamine N 99.6 5.7E-14 1.2E-18 117.7 14.3 110 38-157 256-371 (475)
59 PRK11088 rrmA 23S rRNA methylt 99.6 8.8E-14 1.9E-18 108.5 14.4 111 38-159 72-185 (272)
60 PF02353 CMAS: Mycolic acid cy 99.6 2.6E-14 5.6E-19 110.9 11.3 101 48-157 60-168 (273)
61 PRK08317 hypothetical protein; 99.6 1.2E-13 2.7E-18 105.3 14.9 112 38-157 9-126 (241)
62 PF08003 Methyltransf_9: Prote 99.6 6.3E-14 1.4E-18 107.9 13.0 165 16-194 80-252 (315)
63 COG2519 GCD14 tRNA(1-methylade 99.6 8.5E-14 1.9E-18 104.4 13.3 126 26-158 72-198 (256)
64 PRK14967 putative methyltransf 99.6 2.4E-13 5.3E-18 103.0 15.2 102 48-158 34-162 (223)
65 PRK14903 16S rRNA methyltransf 99.6 7.5E-14 1.6E-18 115.1 13.4 129 28-163 217-374 (431)
66 TIGR02072 BioC biotin biosynth 99.6 8.8E-14 1.9E-18 106.2 12.9 112 38-159 21-139 (240)
67 KOG2904|consensus 99.6 1.5E-13 3.1E-18 103.6 13.4 138 15-157 109-287 (328)
68 PRK09328 N5-glutamine S-adenos 99.6 1.9E-13 4.1E-18 106.7 14.4 137 16-159 73-242 (275)
69 PF08704 GCD14: tRNA methyltra 99.6 2E-13 4.4E-18 103.8 14.1 128 24-157 16-148 (247)
70 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.3E-13 2.8E-18 109.7 13.4 98 49-155 112-215 (340)
71 TIGR00537 hemK_rel_arch HemK-r 99.5 1.8E-13 3.9E-18 100.3 13.3 101 48-159 17-144 (179)
72 PF06325 PrmA: Ribosomal prote 99.5 5.3E-14 1.1E-18 109.8 10.9 122 20-155 135-259 (295)
73 PF13649 Methyltransf_25: Meth 99.5 1.7E-14 3.8E-19 95.8 6.9 90 54-149 1-101 (101)
74 TIGR00406 prmA ribosomal prote 99.5 2.7E-13 5.8E-18 106.5 14.6 109 41-157 150-261 (288)
75 PRK14901 16S rRNA methyltransf 99.5 1.5E-13 3.2E-18 113.7 13.8 126 30-162 234-391 (434)
76 TIGR00452 methyltransferase, p 99.5 2.4E-13 5.3E-18 107.2 14.3 121 29-156 98-226 (314)
77 PRK04266 fibrillarin; Provisio 99.5 2.6E-13 5.6E-18 102.6 13.6 101 48-156 70-177 (226)
78 TIGR01177 conserved hypothetic 99.5 2.5E-13 5.4E-18 108.7 14.1 117 33-159 167-298 (329)
79 PRK10901 16S rRNA methyltransf 99.5 2.5E-13 5.5E-18 112.1 14.3 121 32-161 228-378 (427)
80 PRK14904 16S rRNA methyltransf 99.5 2.8E-13 6E-18 112.5 14.5 127 28-162 230-384 (445)
81 KOG1270|consensus 99.5 2.5E-14 5.4E-19 107.3 7.4 100 51-159 90-199 (282)
82 PLN02781 Probable caffeoyl-CoA 99.5 1.5E-13 3.3E-18 104.7 11.3 112 38-154 57-177 (234)
83 PRK14968 putative methyltransf 99.5 1E-12 2.2E-17 96.8 15.0 113 38-159 13-152 (188)
84 KOG1540|consensus 99.5 5.5E-13 1.2E-17 99.7 13.4 109 49-159 99-218 (296)
85 PRK10909 rsmD 16S rRNA m(2)G96 99.5 2.5E-12 5.5E-17 95.3 17.0 153 17-177 19-185 (199)
86 PRK14121 tRNA (guanine-N(7)-)- 99.5 3.3E-13 7.1E-18 108.5 13.2 105 49-159 121-239 (390)
87 PLN03075 nicotianamine synthas 99.5 3.4E-13 7.4E-18 104.7 12.7 104 49-156 122-234 (296)
88 TIGR00563 rsmB ribosomal RNA s 99.5 4.7E-13 1E-17 110.5 14.3 126 28-161 218-374 (426)
89 smart00828 PKS_MT Methyltransf 99.5 2.1E-13 4.5E-18 103.4 11.2 99 52-156 1-105 (224)
90 PRK14902 16S rRNA methyltransf 99.5 4.4E-13 9.5E-18 111.3 14.0 125 28-159 230-383 (444)
91 PRK06922 hypothetical protein; 99.5 4.1E-13 8.9E-18 113.4 13.6 101 49-156 417-538 (677)
92 PRK12335 tellurite resistance 99.5 5.1E-13 1.1E-17 104.9 13.2 96 50-155 120-223 (287)
93 PRK00216 ubiE ubiquinone/menaq 99.5 1.4E-12 3.1E-17 99.5 15.2 114 38-157 41-160 (239)
94 PF08242 Methyltransf_12: Meth 99.5 1.1E-14 2.4E-19 96.4 2.9 91 55-151 1-99 (99)
95 PRK13168 rumA 23S rRNA m(5)U19 99.5 4.2E-13 9.2E-18 111.3 12.9 157 23-191 267-432 (443)
96 PRK00517 prmA ribosomal protei 99.5 8.1E-13 1.8E-17 101.8 13.3 104 39-156 108-214 (250)
97 TIGR03587 Pse_Me-ase pseudamin 99.5 1.9E-12 4.1E-17 96.6 14.5 95 48-156 41-143 (204)
98 PRK03522 rumB 23S rRNA methylu 99.5 6.1E-13 1.3E-17 105.8 12.6 146 32-191 153-304 (315)
99 PRK11705 cyclopropane fatty ac 99.5 8.2E-13 1.8E-17 107.4 13.4 98 48-158 165-270 (383)
100 KOG1271|consensus 99.5 5.8E-13 1.3E-17 94.7 10.3 136 29-169 40-195 (227)
101 smart00138 MeTrc Methyltransfe 99.5 7.8E-13 1.7E-17 102.5 11.9 132 25-156 68-243 (264)
102 PRK05785 hypothetical protein; 99.5 1.8E-12 3.9E-17 98.3 13.6 98 36-148 37-140 (226)
103 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 2.6E-12 5.6E-17 97.1 14.3 111 39-158 30-146 (223)
104 PF13489 Methyltransf_23: Meth 99.5 5.6E-13 1.2E-17 95.6 9.8 101 41-159 13-119 (161)
105 PLN02476 O-methyltransferase 99.5 1.2E-12 2.6E-17 101.1 12.0 117 32-154 102-227 (278)
106 COG4122 Predicted O-methyltran 99.5 1.5E-12 3.2E-17 97.0 12.1 116 33-154 44-165 (219)
107 PRK04457 spermidine synthase; 99.5 1.6E-12 3.5E-17 100.6 12.5 118 36-159 53-181 (262)
108 PRK11188 rrmJ 23S rRNA methylt 99.4 9.1E-13 2E-17 98.7 10.4 97 48-160 49-170 (209)
109 PF07021 MetW: Methionine bios 99.4 5.9E-13 1.3E-17 96.4 8.8 99 47-159 10-113 (193)
110 PLN02672 methionine S-methyltr 99.4 2.5E-12 5.3E-17 114.7 14.4 148 15-164 81-287 (1082)
111 PF03848 TehB: Tellurite resis 99.4 2.9E-12 6.2E-17 93.9 12.2 99 48-156 28-134 (192)
112 TIGR02716 C20_methyl_CrtF C-20 99.4 4E-12 8.8E-17 100.8 13.8 101 48-156 147-255 (306)
113 PTZ00146 fibrillarin; Provisio 99.4 4.8E-12 1E-16 98.0 13.4 102 48-156 130-238 (293)
114 PF01596 Methyltransf_3: O-met 99.4 5.8E-13 1.3E-17 99.1 7.8 115 35-154 31-154 (205)
115 smart00650 rADc Ribosomal RNA 99.4 3.7E-12 8.1E-17 92.5 11.9 105 39-155 4-113 (169)
116 PHA03412 putative methyltransf 99.4 7.2E-12 1.6E-16 94.1 12.7 112 26-153 29-160 (241)
117 TIGR03840 TMPT_Se_Te thiopurin 99.4 7.1E-12 1.5E-16 94.0 12.6 105 49-156 33-153 (213)
118 TIGR02085 meth_trns_rumB 23S r 99.4 1.8E-12 3.8E-17 105.3 9.9 155 23-191 203-364 (374)
119 PLN02336 phosphoethanolamine N 99.4 5.5E-12 1.2E-16 105.8 12.6 106 38-155 27-142 (475)
120 PHA03411 putative methyltransf 99.4 1.2E-11 2.6E-16 94.9 13.2 117 27-159 45-187 (279)
121 PRK00811 spermidine synthase; 99.4 7.1E-12 1.5E-16 98.1 12.0 109 49-158 75-194 (283)
122 PRK15128 23S rRNA m(5)C1962 me 99.4 5.7E-12 1.2E-16 102.7 11.6 106 49-159 219-343 (396)
123 PLN02589 caffeoyl-CoA O-methyl 99.4 8E-12 1.7E-16 95.4 11.5 114 34-153 65-188 (247)
124 TIGR03438 probable methyltrans 99.4 2.2E-11 4.7E-16 96.3 13.7 117 36-156 49-178 (301)
125 PF02390 Methyltransf_4: Putat 99.3 7.3E-12 1.6E-16 92.7 9.6 104 49-158 16-136 (195)
126 TIGR00438 rrmJ cell division p 99.3 1.2E-11 2.5E-16 91.4 10.6 95 48-158 30-149 (188)
127 TIGR02021 BchM-ChlM magnesium 99.3 2.8E-11 6.2E-16 91.5 13.0 105 39-153 44-156 (219)
128 PRK06202 hypothetical protein; 99.3 4.3E-11 9.3E-16 91.3 12.9 96 49-154 59-165 (232)
129 TIGR00479 rumA 23S rRNA (uraci 99.3 6.3E-12 1.4E-16 104.1 8.6 146 33-191 273-428 (431)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.4E-11 3.1E-16 107.4 11.0 106 49-159 537-660 (702)
131 PRK05134 bifunctional 3-demeth 99.3 4.8E-11 1E-15 91.0 12.2 101 48-157 46-153 (233)
132 KOG4300|consensus 99.3 1.7E-11 3.6E-16 89.1 9.0 99 50-155 76-182 (252)
133 PRK05031 tRNA (uracil-5-)-meth 99.3 9.7E-12 2.1E-16 100.6 8.7 151 28-191 182-351 (362)
134 COG0220 Predicted S-adenosylme 99.3 3.4E-11 7.4E-16 90.7 10.9 102 52-159 50-168 (227)
135 PRK13255 thiopurine S-methyltr 99.3 9.1E-11 2E-15 88.4 12.3 103 48-153 35-153 (218)
136 PRK11933 yebU rRNA (cytosine-C 99.3 1E-10 2.2E-15 97.0 13.5 127 29-160 92-247 (470)
137 TIGR01983 UbiG ubiquinone bios 99.3 5.6E-11 1.2E-15 90.0 11.0 101 50-158 45-152 (224)
138 PRK01581 speE spermidine synth 99.3 8.4E-11 1.8E-15 93.6 12.0 107 49-156 149-269 (374)
139 cd02440 AdoMet_MTases S-adenos 99.3 9.8E-11 2.1E-15 77.0 10.6 95 53-154 1-103 (107)
140 PLN02366 spermidine synthase 99.3 1E-10 2.2E-15 92.3 12.3 106 49-156 90-207 (308)
141 TIGR02081 metW methionine bios 99.3 4.8E-11 1E-15 88.5 10.0 97 47-157 10-111 (194)
142 TIGR00095 RNA methyltransferas 99.3 8E-10 1.7E-14 81.5 16.2 140 30-176 30-184 (189)
143 TIGR00417 speE spermidine synt 99.3 6E-11 1.3E-15 92.4 10.7 107 50-158 72-189 (270)
144 TIGR02143 trmA_only tRNA (urac 99.3 2.7E-11 5.8E-16 97.6 8.9 147 32-191 178-342 (353)
145 PRK00274 ksgA 16S ribosomal RN 99.3 8.7E-11 1.9E-15 91.6 11.1 103 30-145 24-126 (272)
146 PRK14896 ksgA 16S ribosomal RN 99.2 2.1E-10 4.5E-15 88.8 13.0 93 30-136 11-103 (258)
147 PLN02585 magnesium protoporphy 99.2 2.8E-10 6.2E-15 90.0 13.8 98 35-138 128-226 (315)
148 COG2263 Predicted RNA methylas 99.2 2.3E-10 5E-15 82.3 12.0 99 26-135 20-119 (198)
149 PF03602 Cons_hypoth95: Conser 99.2 1.7E-10 3.7E-15 84.5 11.0 145 27-177 19-179 (183)
150 COG1092 Predicted SAM-dependen 99.2 1.1E-10 2.5E-15 94.2 10.9 106 51-161 218-342 (393)
151 KOG1541|consensus 99.2 1.7E-10 3.8E-15 84.6 10.8 115 33-162 33-167 (270)
152 PTZ00338 dimethyladenosine tra 99.2 1.6E-10 3.4E-15 90.7 11.2 105 30-145 18-122 (294)
153 PRK03612 spermidine synthase; 99.2 1.6E-10 3.5E-15 97.6 12.0 109 49-158 296-418 (521)
154 TIGR00755 ksgA dimethyladenosi 99.2 3.2E-10 7E-15 87.5 12.4 106 30-149 11-120 (253)
155 PRK07580 Mg-protoporphyrin IX 99.2 4.4E-10 9.6E-15 85.5 13.0 78 49-136 62-139 (230)
156 KOG2899|consensus 99.2 8.9E-11 1.9E-15 87.3 8.5 115 42-159 50-213 (288)
157 KOG3010|consensus 99.2 5.5E-11 1.2E-15 88.4 6.9 96 51-153 34-135 (261)
158 KOG3191|consensus 99.2 3.4E-10 7.3E-15 80.7 10.4 113 51-170 44-184 (209)
159 PRK13256 thiopurine S-methyltr 99.2 7.1E-10 1.5E-14 83.5 12.7 120 32-157 28-165 (226)
160 COG0742 N6-adenine-specific me 99.2 7.4E-09 1.6E-13 75.1 16.4 156 16-177 7-180 (187)
161 COG1041 Predicted DNA modifica 99.1 7.9E-10 1.7E-14 87.1 11.7 115 32-156 181-311 (347)
162 PF02475 Met_10: Met-10+ like- 99.1 6.7E-10 1.5E-14 82.2 10.4 102 45-152 96-199 (200)
163 COG0144 Sun tRNA and rRNA cyto 99.1 2E-09 4.2E-14 86.9 13.9 132 25-163 133-296 (355)
164 PF02384 N6_Mtase: N-6 DNA Met 99.1 5.7E-10 1.2E-14 88.8 10.7 128 26-158 24-186 (311)
165 PF01170 UPF0020: Putative RNA 99.1 2.9E-09 6.2E-14 77.9 13.1 117 32-156 12-151 (179)
166 COG3963 Phospholipid N-methylt 99.1 3.1E-09 6.6E-14 74.9 12.3 131 20-163 21-164 (194)
167 COG2265 TrmA SAM-dependent met 99.1 1.8E-10 3.9E-15 94.6 7.2 140 22-169 262-410 (432)
168 PRK04338 N(2),N(2)-dimethylgua 99.1 1.1E-09 2.3E-14 89.0 11.5 115 33-154 41-157 (382)
169 PRK11727 23S rRNA mA1618 methy 99.1 1.1E-09 2.3E-14 86.7 11.0 83 50-137 114-202 (321)
170 PF10672 Methyltrans_SAM: S-ad 99.1 4.7E-10 1E-14 87.3 8.7 108 49-161 122-244 (286)
171 PF05724 TPMT: Thiopurine S-me 99.1 1.2E-09 2.5E-14 82.3 10.4 116 32-153 22-153 (218)
172 PF03291 Pox_MCEL: mRNA cappin 99.1 1.2E-09 2.5E-14 87.1 10.6 108 50-159 62-190 (331)
173 KOG2915|consensus 99.1 3.2E-09 6.9E-14 80.4 12.0 123 25-153 82-207 (314)
174 KOG3420|consensus 99.1 5E-10 1.1E-14 77.0 7.0 103 25-135 21-125 (185)
175 COG4976 Predicted methyltransf 99.1 8.9E-11 1.9E-15 86.7 2.7 116 32-162 109-232 (287)
176 KOG2361|consensus 99.0 7E-10 1.5E-14 82.6 7.3 147 15-167 35-195 (264)
177 PLN02823 spermine synthase 99.0 4E-09 8.7E-14 84.2 12.1 107 49-157 102-222 (336)
178 PF10294 Methyltransf_16: Puta 99.0 3.2E-09 6.9E-14 77.3 10.7 108 47-158 42-159 (173)
179 KOG1499|consensus 99.0 9.9E-10 2.1E-14 86.1 8.4 98 48-152 58-164 (346)
180 KOG1663|consensus 99.0 6.3E-09 1.4E-13 77.1 12.2 121 28-154 52-182 (237)
181 PF06080 DUF938: Protein of un 99.0 3.1E-09 6.7E-14 78.2 10.4 109 40-153 14-139 (204)
182 COG0030 KsgA Dimethyladenosine 99.0 4.4E-09 9.6E-14 80.3 11.2 104 30-145 12-116 (259)
183 PF00891 Methyltransf_2: O-met 99.0 4.8E-09 1E-13 80.5 11.3 92 48-155 98-199 (241)
184 KOG0820|consensus 99.0 5E-09 1.1E-13 79.4 10.9 102 23-135 32-134 (315)
185 PF05958 tRNA_U5-meth_tr: tRNA 99.0 6.7E-10 1.5E-14 89.6 6.1 157 23-192 167-342 (352)
186 PRK01544 bifunctional N5-gluta 99.0 3.8E-09 8.3E-14 89.0 10.7 103 50-158 347-465 (506)
187 COG0421 SpeE Spermidine syntha 99.0 1.3E-08 2.8E-13 79.2 11.6 119 36-157 61-192 (282)
188 PF05219 DREV: DREV methyltran 99.0 1.4E-08 3E-13 77.0 11.2 117 26-159 66-192 (265)
189 KOG1975|consensus 98.9 4.2E-09 9.1E-14 81.6 8.2 109 48-159 115-241 (389)
190 TIGR02987 met_A_Alw26 type II 98.9 1.6E-08 3.5E-13 85.9 12.3 104 27-135 3-123 (524)
191 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 8.1E-09 1.8E-13 80.9 8.7 130 27-163 64-227 (283)
192 PRK00536 speE spermidine synth 98.9 3.9E-08 8.4E-13 75.7 12.1 117 36-159 57-175 (262)
193 COG2520 Predicted methyltransf 98.9 1.7E-08 3.6E-13 80.1 10.1 106 48-159 186-293 (341)
194 PRK00050 16S rRNA m(4)C1402 me 98.9 8.3E-09 1.8E-13 80.7 7.5 92 34-134 5-100 (296)
195 PF01564 Spermine_synth: Sperm 98.9 1.4E-08 3E-13 78.0 8.5 109 49-159 75-195 (246)
196 PF05185 PRMT5: PRMT5 arginine 98.9 2.8E-08 6.1E-13 82.3 10.7 97 51-152 187-294 (448)
197 COG2521 Predicted archaeal met 98.8 7.8E-09 1.7E-13 76.7 5.9 107 48-159 132-249 (287)
198 PRK04148 hypothetical protein; 98.8 2.5E-07 5.5E-12 63.8 12.8 96 49-159 15-113 (134)
199 PF02527 GidB: rRNA small subu 98.8 4.9E-08 1.1E-12 71.5 9.7 100 53-159 51-152 (184)
200 PRK10611 chemotaxis methyltran 98.8 1.2E-07 2.6E-12 74.1 12.3 131 24-155 90-262 (287)
201 TIGR00308 TRM1 tRNA(guanine-26 98.8 5.7E-08 1.2E-12 78.7 10.6 99 52-155 46-147 (374)
202 PF01739 CheR: CheR methyltran 98.8 5.6E-08 1.2E-12 71.9 9.6 107 50-156 31-176 (196)
203 KOG1500|consensus 98.8 4.7E-08 1E-12 76.4 9.1 99 49-155 176-282 (517)
204 PLN02232 ubiquinone biosynthes 98.8 5.3E-08 1.1E-12 70.0 8.4 78 79-158 1-84 (160)
205 PF09445 Methyltransf_15: RNA 98.7 2.3E-08 5.1E-13 71.3 5.5 76 52-134 1-79 (163)
206 PF00398 RrnaAD: Ribosomal RNA 98.7 2.1E-07 4.6E-12 72.2 10.3 95 30-136 12-109 (262)
207 TIGR00478 tly hemolysin TlyA f 98.7 1.6E-07 3.5E-12 71.0 8.9 97 49-155 74-171 (228)
208 COG0293 FtsJ 23S rRNA methylas 98.6 8.8E-07 1.9E-11 65.3 11.2 99 47-161 42-165 (205)
209 PF05891 Methyltransf_PK: AdoM 98.6 1.6E-07 3.5E-12 69.6 7.2 99 51-157 56-163 (218)
210 PF05148 Methyltransf_8: Hypot 98.6 2.2E-07 4.9E-12 68.3 7.4 96 38-158 61-161 (219)
211 COG1352 CheR Methylase of chem 98.6 9.4E-07 2E-11 68.3 11.2 128 28-155 69-241 (268)
212 KOG1122|consensus 98.6 7.5E-07 1.6E-11 71.6 10.5 108 48-161 239-377 (460)
213 KOG2940|consensus 98.6 6.6E-08 1.4E-12 71.8 4.0 107 49-164 71-183 (325)
214 COG0116 Predicted N6-adenine-s 98.6 2.3E-06 5.1E-11 68.6 12.9 108 48-159 189-348 (381)
215 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3E-06 6.6E-11 74.4 14.7 122 33-159 174-351 (702)
216 KOG2187|consensus 98.5 4.7E-07 1E-11 74.5 8.8 132 19-158 349-493 (534)
217 COG0357 GidB Predicted S-adeno 98.5 1.1E-06 2.3E-11 65.6 9.8 97 51-154 68-167 (215)
218 PF01269 Fibrillarin: Fibrilla 98.5 4.7E-06 1E-10 62.0 12.6 115 35-156 57-179 (229)
219 KOG3115|consensus 98.5 7.3E-07 1.6E-11 65.0 7.7 147 5-155 17-183 (249)
220 PF08123 DOT1: Histone methyla 98.5 1.6E-06 3.4E-11 64.7 9.5 116 35-153 29-156 (205)
221 COG4262 Predicted spermidine s 98.4 2.1E-06 4.5E-11 68.1 9.7 120 49-169 288-422 (508)
222 PF12147 Methyltransf_20: Puta 98.4 3.6E-06 7.8E-11 65.0 10.6 117 49-170 134-266 (311)
223 PF01728 FtsJ: FtsJ-like methy 98.4 1.1E-06 2.4E-11 64.4 7.7 94 50-159 23-143 (181)
224 KOG4589|consensus 98.4 2.3E-06 5.1E-11 61.6 8.9 99 47-161 66-190 (232)
225 COG0275 Predicted S-adenosylme 98.4 7.9E-06 1.7E-10 63.4 12.2 90 34-131 9-103 (314)
226 TIGR00006 S-adenosyl-methyltra 98.4 2.9E-06 6.2E-11 66.7 9.7 93 33-134 5-102 (305)
227 COG0286 HsdM Type I restrictio 98.4 7.7E-06 1.7E-10 68.9 12.6 128 28-161 166-332 (489)
228 TIGR03439 methyl_EasF probable 98.4 1.8E-05 3.8E-10 63.0 13.9 115 37-156 63-198 (319)
229 COG4076 Predicted RNA methylas 98.4 9.8E-07 2.1E-11 63.6 5.9 92 51-152 33-132 (252)
230 PF13679 Methyltransf_32: Meth 98.3 8.3E-06 1.8E-10 57.3 9.8 107 49-158 24-134 (141)
231 PF04816 DUF633: Family of unk 98.3 6.5E-06 1.4E-10 61.4 9.0 76 54-134 1-76 (205)
232 KOG3045|consensus 98.3 3.9E-06 8.5E-11 63.5 7.7 94 39-159 170-268 (325)
233 PF03059 NAS: Nicotianamine sy 98.3 1.2E-05 2.6E-10 62.4 10.1 105 51-158 121-233 (276)
234 PRK10742 putative methyltransf 98.2 7.4E-06 1.6E-10 62.3 8.3 93 39-136 77-176 (250)
235 COG2384 Predicted SAM-dependen 98.2 1.1E-05 2.4E-10 59.8 8.6 83 48-135 14-96 (226)
236 TIGR01444 fkbM_fam methyltrans 98.2 9.7E-06 2.1E-10 56.9 7.3 58 53-116 1-58 (143)
237 PF03141 Methyltransf_29: Puta 98.2 3.7E-06 8E-11 69.4 5.7 91 52-159 119-223 (506)
238 COG3897 Predicted methyltransf 98.2 1E-05 2.2E-10 58.8 7.2 99 49-158 78-181 (218)
239 PF05971 Methyltransf_10: Prot 98.1 4.6E-05 1E-09 59.7 10.5 87 51-142 103-195 (299)
240 PF13578 Methyltransf_24: Meth 98.1 5.6E-07 1.2E-11 60.0 -0.3 95 55-154 1-104 (106)
241 KOG2198|consensus 98.1 4.3E-05 9.3E-10 60.9 9.6 109 48-161 153-302 (375)
242 PF09243 Rsm22: Mitochondrial 98.1 6.9E-05 1.5E-09 58.6 10.7 48 50-97 33-80 (274)
243 PF06962 rRNA_methylase: Putat 98.0 2.6E-05 5.6E-10 54.2 7.1 79 77-159 1-96 (140)
244 COG0500 SmtA SAM-dependent met 98.0 0.00018 3.8E-09 50.5 11.4 101 54-160 52-160 (257)
245 PRK11760 putative 23S rRNA C24 98.0 0.00025 5.4E-09 56.5 12.6 86 48-148 209-296 (357)
246 KOG1331|consensus 98.0 1.2E-05 2.6E-10 61.8 4.7 95 48-159 43-147 (293)
247 COG1889 NOP1 Fibrillarin-like 97.9 0.00025 5.3E-09 52.1 10.6 114 35-156 60-181 (231)
248 PF01795 Methyltransf_5: MraW 97.9 5.4E-05 1.2E-09 59.7 7.1 92 34-134 6-103 (310)
249 KOG2352|consensus 97.9 0.00023 5.1E-09 58.7 10.9 105 44-156 41-162 (482)
250 KOG1596|consensus 97.9 0.00011 2.5E-09 55.2 8.4 106 47-159 153-265 (317)
251 PF07091 FmrO: Ribosomal RNA m 97.9 0.00013 2.9E-09 55.4 8.7 93 37-137 92-184 (251)
252 KOG2730|consensus 97.8 3E-05 6.4E-10 57.5 4.9 78 50-134 94-175 (263)
253 COG1064 AdhP Zn-dependent alco 97.8 0.00019 4.1E-09 57.3 9.3 95 48-157 164-261 (339)
254 KOG1269|consensus 97.8 7E-05 1.5E-09 60.6 6.9 110 41-156 101-216 (364)
255 PF04672 Methyltransf_19: S-ad 97.8 0.00063 1.4E-08 52.5 11.5 116 36-159 55-194 (267)
256 COG4798 Predicted methyltransf 97.8 0.00014 3E-09 53.0 7.2 104 48-155 46-166 (238)
257 KOG3178|consensus 97.8 0.00019 4.1E-09 56.9 8.6 90 52-156 179-276 (342)
258 KOG1709|consensus 97.8 0.00032 6.9E-09 52.0 9.0 97 49-153 100-204 (271)
259 KOG3987|consensus 97.8 9.8E-06 2.1E-10 59.5 1.2 111 31-159 92-211 (288)
260 PF01861 DUF43: Protein of unk 97.7 0.0034 7.3E-08 47.6 14.1 103 49-159 43-153 (243)
261 KOG0024|consensus 97.7 0.00041 8.9E-09 54.5 9.3 101 48-158 167-276 (354)
262 PF07942 N2227: N2227-like pro 97.7 0.00084 1.8E-08 52.1 10.7 118 36-157 36-203 (270)
263 COG1063 Tdh Threonine dehydrog 97.7 0.001 2.2E-08 53.9 11.6 101 49-158 167-272 (350)
264 PF04445 SAM_MT: Putative SAM- 97.6 0.00021 4.7E-09 54.0 6.7 86 48-136 71-163 (234)
265 PF02005 TRM: N2,N2-dimethylgu 97.6 0.00046 1E-08 56.3 9.0 105 49-156 48-155 (377)
266 KOG2671|consensus 97.6 0.00026 5.6E-09 56.0 7.0 103 48-156 206-355 (421)
267 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00031 6.7E-09 54.1 6.9 107 49-158 55-202 (256)
268 PF04989 CmcI: Cephalosporin h 97.6 0.0016 3.5E-08 48.3 10.3 114 33-154 17-146 (206)
269 COG1189 Predicted rRNA methyla 97.5 0.00095 2.1E-08 50.3 8.4 97 49-158 78-181 (245)
270 PF11968 DUF3321: Putative met 97.5 0.00032 6.9E-09 52.2 5.7 84 52-159 53-153 (219)
271 KOG4058|consensus 97.4 0.0018 3.9E-08 45.2 8.1 118 35-160 59-177 (199)
272 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0042 9.1E-08 49.8 10.4 118 33-158 37-157 (380)
273 PRK09880 L-idonate 5-dehydroge 97.2 0.0019 4E-08 52.1 8.3 98 49-155 168-266 (343)
274 PRK09424 pntA NAD(P) transhydr 97.2 0.0075 1.6E-07 51.1 11.1 97 49-156 163-286 (509)
275 PHA01634 hypothetical protein 97.1 0.0041 8.8E-08 42.3 7.5 48 49-98 27-74 (156)
276 TIGR00497 hsdM type I restrict 97.0 0.019 4.1E-07 48.9 12.7 132 25-159 192-359 (501)
277 COG5459 Predicted rRNA methyla 97.0 0.001 2.3E-08 52.9 4.6 105 51-160 114-230 (484)
278 COG3129 Predicted SAM-dependen 97.0 0.004 8.7E-08 46.8 7.2 104 34-142 58-171 (292)
279 KOG3201|consensus 97.0 0.00033 7.2E-09 49.6 1.2 105 49-156 28-141 (201)
280 PRK11524 putative methyltransf 96.9 0.0044 9.4E-08 48.8 7.3 47 48-97 206-252 (284)
281 cd08230 glucose_DH Glucose deh 96.9 0.0092 2E-07 48.3 9.3 94 49-154 171-268 (355)
282 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0057 1.2E-07 46.0 7.3 55 33-93 177-231 (231)
283 KOG1501|consensus 96.8 0.0055 1.2E-07 50.3 7.0 57 52-114 68-124 (636)
284 cd08237 ribitol-5-phosphate_DH 96.8 0.011 2.4E-07 47.6 8.8 91 48-154 161-255 (341)
285 PF11599 AviRa: RRNA methyltra 96.8 0.022 4.7E-07 42.5 9.3 118 36-153 35-212 (246)
286 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0087 1.9E-07 40.9 6.7 86 60-158 1-92 (130)
287 PRK13699 putative methylase; P 96.6 0.011 2.4E-07 44.9 7.4 47 48-97 161-207 (227)
288 PF10237 N6-adenineMlase: Prob 96.6 0.071 1.5E-06 38.3 10.9 115 28-159 3-127 (162)
289 KOG1562|consensus 96.5 0.012 2.7E-07 45.8 6.7 103 49-153 120-234 (337)
290 cd00401 AdoHcyase S-adenosyl-L 96.5 0.039 8.5E-07 45.7 10.1 89 48-155 199-289 (413)
291 TIGR01202 bchC 2-desacetyl-2-h 96.4 0.023 5E-07 45.1 8.4 88 49-155 143-231 (308)
292 TIGR02822 adh_fam_2 zinc-bindi 96.4 0.061 1.3E-06 43.2 10.6 90 48-154 163-253 (329)
293 KOG1253|consensus 96.3 0.0059 1.3E-07 50.7 4.4 106 49-158 108-219 (525)
294 KOG0822|consensus 96.3 0.031 6.7E-07 47.0 8.4 96 52-153 369-476 (649)
295 cd08283 FDH_like_1 Glutathione 96.2 0.077 1.7E-06 43.6 10.7 99 48-155 182-306 (386)
296 KOG1099|consensus 96.2 0.016 3.4E-07 43.7 5.7 95 49-159 40-167 (294)
297 KOG2352|consensus 96.2 0.012 2.5E-07 49.0 5.4 105 49-159 294-420 (482)
298 COG1565 Uncharacterized conser 96.2 0.044 9.4E-07 44.1 8.4 76 22-97 39-131 (370)
299 TIGR03366 HpnZ_proposed putati 96.1 0.035 7.5E-07 43.4 7.9 99 49-155 119-218 (280)
300 TIGR03451 mycoS_dep_FDH mycoth 96.1 0.029 6.2E-07 45.5 7.6 98 48-154 174-275 (358)
301 KOG2798|consensus 96.1 0.045 9.8E-07 43.2 7.9 54 33-89 127-186 (369)
302 cd00315 Cyt_C5_DNA_methylase C 96.1 0.023 4.9E-07 44.6 6.4 70 53-135 2-73 (275)
303 PF05711 TylF: Macrocin-O-meth 96.0 0.096 2.1E-06 40.3 9.6 126 30-158 52-215 (248)
304 KOG1227|consensus 96.0 0.0064 1.4E-07 47.5 3.0 95 49-150 193-290 (351)
305 KOG2793|consensus 96.0 0.096 2.1E-06 40.2 9.4 107 50-159 86-203 (248)
306 cd08254 hydroxyacyl_CoA_DH 6-h 96.0 0.12 2.7E-06 41.1 10.5 95 48-155 163-263 (338)
307 PF10354 DUF2431: Domain of un 95.8 0.07 1.5E-06 38.5 7.7 101 56-161 2-131 (166)
308 cd08281 liver_ADH_like1 Zinc-d 95.7 0.035 7.5E-07 45.3 6.5 97 48-154 189-289 (371)
309 cd08239 THR_DH_like L-threonin 95.5 0.076 1.6E-06 42.6 7.7 97 48-154 161-261 (339)
310 TIGR00561 pntA NAD(P) transhyd 95.5 0.11 2.3E-06 44.3 8.7 89 50-152 163-281 (511)
311 PF07757 AdoMet_MTase: Predict 95.4 0.03 6.6E-07 37.0 4.0 31 50-83 58-88 (112)
312 PLN02740 Alcohol dehydrogenase 95.3 0.053 1.2E-06 44.4 6.2 94 48-154 196-299 (381)
313 cd05188 MDR Medium chain reduc 95.3 0.087 1.9E-06 40.3 7.1 99 49-157 133-234 (271)
314 PRK10309 galactitol-1-phosphat 95.2 0.078 1.7E-06 42.7 6.8 95 48-154 158-259 (347)
315 PTZ00357 methyltransferase; Pr 95.2 0.19 4.1E-06 44.1 9.1 97 53-150 703-830 (1072)
316 COG1062 AdhC Zn-dependent alco 95.1 0.43 9.3E-06 38.3 10.4 103 48-162 183-292 (366)
317 PLN02586 probable cinnamyl alc 95.1 0.15 3.1E-06 41.6 8.1 93 48-154 181-277 (360)
318 TIGR03201 dearomat_had 6-hydro 95.1 0.31 6.6E-06 39.4 9.9 97 48-154 164-271 (349)
319 PF03492 Methyltransf_7: SAM d 94.9 0.61 1.3E-05 37.7 10.9 88 49-136 15-119 (334)
320 PF07279 DUF1442: Protein of u 94.8 1.2 2.5E-05 33.5 11.4 115 38-158 30-151 (218)
321 PLN02827 Alcohol dehydrogenase 94.8 0.091 2E-06 43.1 6.3 93 48-153 191-293 (378)
322 PF02254 TrkA_N: TrkA-N domain 94.8 0.22 4.7E-06 33.3 7.2 89 59-159 4-100 (116)
323 PF02636 Methyltransf_28: Puta 94.8 0.11 2.5E-06 40.1 6.4 47 51-97 19-72 (252)
324 PRK01747 mnmC bifunctional tRN 94.7 0.23 5E-06 43.9 8.8 107 49-155 56-206 (662)
325 cd08238 sorbose_phosphate_red 94.7 0.58 1.3E-05 38.8 10.7 106 48-155 173-288 (410)
326 PRK11524 putative methyltransf 94.6 0.047 1E-06 43.0 4.0 52 106-157 7-82 (284)
327 cd08255 2-desacetyl-2-hydroxye 94.6 0.39 8.5E-06 37.2 9.2 93 48-154 95-189 (277)
328 cd08277 liver_alcohol_DH_like 94.6 0.18 3.9E-06 41.0 7.5 97 48-155 182-286 (365)
329 TIGR00936 ahcY adenosylhomocys 94.6 0.41 8.8E-06 39.7 9.4 89 49-156 193-283 (406)
330 KOG2078|consensus 94.6 0.039 8.4E-07 45.3 3.4 63 48-116 247-309 (495)
331 TIGR02819 fdhA_non_GSH formald 94.5 0.7 1.5E-05 38.1 10.8 96 48-155 183-299 (393)
332 cd08285 NADP_ADH NADP(H)-depen 94.4 0.22 4.7E-06 40.2 7.5 95 48-154 164-265 (351)
333 PLN03154 putative allyl alcoho 94.4 0.29 6.3E-06 39.6 8.1 96 48-154 156-257 (348)
334 PLN02514 cinnamyl-alcohol dehy 94.4 0.37 8.1E-06 39.1 8.8 95 49-154 179-274 (357)
335 KOG1098|consensus 94.2 0.054 1.2E-06 46.5 3.6 40 47-86 41-80 (780)
336 TIGR02818 adh_III_F_hyde S-(hy 94.2 0.23 5E-06 40.5 7.3 98 48-155 183-287 (368)
337 PLN02668 indole-3-acetate carb 94.2 0.82 1.8E-05 37.6 10.2 86 51-136 64-174 (386)
338 cd08300 alcohol_DH_class_III c 93.9 1.5 3.2E-05 35.7 11.4 94 48-154 184-287 (368)
339 KOG2360|consensus 93.9 0.24 5.2E-06 40.2 6.4 95 33-134 198-294 (413)
340 PF03141 Methyltransf_29: Puta 93.9 0.08 1.7E-06 44.4 3.9 87 52-155 367-467 (506)
341 cd05278 FDH_like Formaldehyde 93.8 0.4 8.7E-06 38.4 7.9 98 48-154 165-266 (347)
342 PLN02494 adenosylhomocysteinas 93.8 0.45 9.8E-06 40.1 8.2 89 49-156 252-342 (477)
343 cd08232 idonate-5-DH L-idonate 93.8 0.39 8.4E-06 38.4 7.8 93 50-154 165-261 (339)
344 cd08296 CAD_like Cinnamyl alco 93.7 0.34 7.4E-06 38.8 7.3 95 48-155 161-259 (333)
345 cd08242 MDR_like Medium chain 93.6 0.91 2E-05 35.9 9.6 90 48-153 153-243 (319)
346 PLN02178 cinnamyl-alcohol dehy 93.6 0.44 9.6E-06 39.0 7.8 91 49-154 177-272 (375)
347 PRK08306 dipicolinate synthase 93.5 0.48 1E-05 37.6 7.7 88 50-153 151-239 (296)
348 KOG0023|consensus 93.5 0.26 5.7E-06 39.2 5.9 99 48-158 179-282 (360)
349 PRK05476 S-adenosyl-L-homocyst 93.5 0.41 9E-06 39.9 7.5 88 49-155 210-299 (425)
350 KOG0022|consensus 93.5 1.4 3E-05 35.2 9.8 96 48-155 190-294 (375)
351 PF05206 TRM13: Methyltransfer 93.4 0.87 1.9E-05 35.4 8.7 41 48-88 16-60 (259)
352 cd08245 CAD Cinnamyl alcohol d 93.3 0.85 1.8E-05 36.3 9.0 95 48-155 160-256 (330)
353 TIGR02825 B4_12hDH leukotriene 93.2 2.5 5.4E-05 33.6 11.6 95 48-154 136-236 (325)
354 cd08301 alcohol_DH_plants Plan 93.1 0.44 9.5E-06 38.8 7.1 94 48-154 185-288 (369)
355 cd08298 CAD2 Cinnamyl alcohol 93.0 1.9 4.1E-05 34.2 10.6 90 48-154 165-255 (329)
356 PF06859 Bin3: Bicoid-interact 92.8 0.066 1.4E-06 35.6 1.5 35 124-158 1-47 (110)
357 cd08231 MDR_TM0436_like Hypoth 92.7 2.1 4.6E-05 34.6 10.6 95 49-154 176-279 (361)
358 cd08233 butanediol_DH_like (2R 92.7 0.65 1.4E-05 37.4 7.5 97 48-154 170-271 (351)
359 cd08234 threonine_DH_like L-th 92.7 1.8 3.8E-05 34.4 10.0 95 48-155 157-257 (334)
360 COG0604 Qor NADPH:quinone redu 92.6 0.68 1.5E-05 37.2 7.4 100 48-158 140-244 (326)
361 cd08294 leukotriene_B4_DH_like 92.5 1 2.2E-05 35.7 8.3 94 48-154 141-240 (329)
362 KOG2651|consensus 92.4 0.65 1.4E-05 37.9 6.8 44 49-94 152-195 (476)
363 cd08261 Zn_ADH7 Alcohol dehydr 92.4 0.45 9.8E-06 38.0 6.2 97 48-154 157-257 (337)
364 COG1568 Predicted methyltransf 92.3 1.1 2.4E-05 35.0 7.8 102 51-159 153-264 (354)
365 PTZ00075 Adenosylhomocysteinas 92.3 0.6 1.3E-05 39.4 6.8 90 49-157 252-343 (476)
366 cd08278 benzyl_alcohol_DH Benz 92.2 0.83 1.8E-05 37.1 7.7 95 48-155 184-285 (365)
367 cd05285 sorbitol_DH Sorbitol d 92.2 1.1 2.4E-05 35.9 8.3 97 48-155 160-265 (343)
368 cd08293 PTGR2 Prostaglandin re 92.2 1.1 2.3E-05 35.9 8.2 93 48-154 150-253 (345)
369 PRK13699 putative methylase; P 92.2 0.19 4.2E-06 38.2 3.6 47 109-155 3-72 (227)
370 COG0270 Dcm Site-specific DNA 92.1 1.6 3.5E-05 35.1 9.0 74 51-136 3-79 (328)
371 TIGR00518 alaDH alanine dehydr 91.9 0.6 1.3E-05 38.3 6.4 95 50-155 166-267 (370)
372 cd08295 double_bond_reductase_ 91.8 2 4.3E-05 34.4 9.3 95 48-154 149-250 (338)
373 cd08286 FDH_like_ADH2 formalde 91.8 1.1 2.4E-05 35.9 7.9 98 48-154 164-265 (345)
374 PF00145 DNA_methylase: C-5 cy 91.7 0.34 7.3E-06 38.5 4.7 90 53-157 2-113 (335)
375 COG4301 Uncharacterized conser 91.7 5.1 0.00011 31.0 12.3 103 49-157 77-195 (321)
376 KOG3924|consensus 91.6 1 2.2E-05 36.9 7.2 113 36-154 180-307 (419)
377 PRK10083 putative oxidoreducta 91.5 1.1 2.3E-05 35.9 7.5 99 48-154 158-258 (339)
378 TIGR00675 dcm DNA-methyltransf 91.4 0.46 1E-05 38.0 5.2 69 54-135 1-70 (315)
379 PRK10458 DNA cytosine methylas 91.2 1.3 2.9E-05 37.4 7.9 43 51-95 88-130 (467)
380 PF05050 Methyltransf_21: Meth 91.1 0.66 1.4E-05 32.8 5.3 39 56-94 1-42 (167)
381 cd05281 TDH Threonine dehydrog 91.1 3.9 8.4E-05 32.7 10.3 98 48-154 161-261 (341)
382 COG1748 LYS9 Saccharopine dehy 90.8 1.1 2.4E-05 36.9 6.8 77 52-138 2-82 (389)
383 COG3510 CmcI Cephalosporin hyd 90.8 4.8 0.0001 29.8 9.3 112 32-155 53-180 (237)
384 PF11312 DUF3115: Protein of u 90.6 1 2.3E-05 35.8 6.3 108 52-159 88-246 (315)
385 cd05279 Zn_ADH1 Liver alcohol 90.6 1.5 3.2E-05 35.7 7.5 97 48-154 181-284 (365)
386 COG4627 Uncharacterized protei 90.5 0.042 9.2E-07 38.9 -1.3 43 117-159 40-90 (185)
387 KOG2920|consensus 90.5 0.46 1E-05 37.1 4.2 52 35-88 100-152 (282)
388 cd05284 arabinose_DH_like D-ar 90.5 1.7 3.6E-05 34.7 7.7 95 48-154 165-265 (340)
389 PRK05786 fabG 3-ketoacyl-(acyl 90.5 6 0.00013 29.7 10.5 99 50-156 4-136 (238)
390 PLN02702 L-idonate 5-dehydroge 90.4 4.3 9.4E-05 32.9 10.1 97 48-154 179-284 (364)
391 COG0686 Ald Alanine dehydrogen 90.3 1.2 2.6E-05 35.5 6.2 91 52-153 169-266 (371)
392 cd08236 sugar_DH NAD(P)-depend 89.8 1.6 3.5E-05 34.9 7.1 95 48-155 157-258 (343)
393 PRK06940 short chain dehydroge 89.7 7.2 0.00016 30.3 10.5 74 53-134 4-86 (275)
394 KOG2912|consensus 89.7 1.8 3.9E-05 34.6 6.8 77 54-135 106-189 (419)
395 cd05283 CAD1 Cinnamyl alcohol 89.6 4.9 0.00011 32.1 9.7 95 48-155 167-263 (337)
396 cd08284 FDH_like_2 Glutathione 89.5 7 0.00015 31.2 10.6 95 48-155 165-266 (344)
397 PF05575 V_cholerae_RfbT: Vibr 89.4 0.84 1.8E-05 32.9 4.5 58 39-97 68-125 (286)
398 KOG2782|consensus 89.4 0.45 9.8E-06 35.8 3.2 58 35-95 30-87 (303)
399 COG2961 ComJ Protein involved 89.3 5 0.00011 31.0 8.7 89 36-136 76-168 (279)
400 TIGR00692 tdh L-threonine 3-de 89.2 8.2 0.00018 30.9 10.8 97 48-154 159-260 (340)
401 cd08240 6_hydroxyhexanoate_dh_ 89.1 6.5 0.00014 31.6 10.2 93 49-154 174-273 (350)
402 PF02826 2-Hacid_dh_C: D-isome 89.1 0.74 1.6E-05 33.5 4.2 90 49-158 34-129 (178)
403 COG4017 Uncharacterized protei 89.0 4.1 8.9E-05 30.2 7.8 89 49-158 43-132 (254)
404 cd08263 Zn_ADH10 Alcohol dehyd 88.9 6.8 0.00015 31.8 10.2 95 48-155 185-287 (367)
405 PRK09422 ethanol-active dehydr 88.8 2.4 5.1E-05 33.8 7.4 96 48-155 160-261 (338)
406 PF01408 GFO_IDH_MocA: Oxidore 88.7 1.8 3.8E-05 28.9 5.6 93 53-159 2-97 (120)
407 TIGR01470 cysG_Nterm siroheme 88.5 5 0.00011 30.0 8.4 91 50-155 8-100 (205)
408 cd08265 Zn_ADH3 Alcohol dehydr 88.4 2 4.3E-05 35.2 6.7 98 47-154 200-306 (384)
409 KOG1198|consensus 88.3 1.5 3.2E-05 35.7 5.8 101 48-158 155-259 (347)
410 PRK05562 precorrin-2 dehydroge 87.9 3.9 8.5E-05 31.0 7.5 94 49-157 23-118 (223)
411 PRK08324 short chain dehydroge 87.9 4.8 0.0001 35.9 9.2 77 50-134 421-508 (681)
412 COG1255 Uncharacterized protei 87.8 6.5 0.00014 26.5 9.3 91 49-159 13-106 (129)
413 PF11899 DUF3419: Protein of u 87.7 2 4.3E-05 35.4 6.2 47 48-97 33-79 (380)
414 PRK05396 tdh L-threonine 3-deh 87.7 2.2 4.8E-05 34.1 6.5 97 49-155 162-263 (341)
415 KOG3350|consensus 87.4 9.3 0.0002 27.9 10.8 123 25-163 48-180 (217)
416 cd08279 Zn_ADH_class_III Class 87.3 2.6 5.7E-05 34.2 6.8 96 48-155 180-282 (363)
417 PF03686 UPF0146: Uncharacteri 87.2 6.5 0.00014 27.0 7.5 92 49-159 12-106 (127)
418 PRK03659 glutathione-regulated 86.9 4.1 8.9E-05 35.8 8.1 94 52-159 401-502 (601)
419 COG0863 DNA modification methy 86.7 3.9 8.5E-05 32.1 7.4 55 40-97 212-266 (302)
420 KOG0821|consensus 86.6 2.3 4.9E-05 32.3 5.4 59 50-116 50-108 (326)
421 PRK03562 glutathione-regulated 86.5 8.5 0.00018 34.0 9.8 94 51-158 400-501 (621)
422 KOG2539|consensus 86.3 4.9 0.00011 33.8 7.6 107 51-159 201-319 (491)
423 PF08484 Methyltransf_14: C-me 86.1 3 6.4E-05 29.9 5.8 93 48-156 65-160 (160)
424 cd08256 Zn_ADH2 Alcohol dehydr 86.0 12 0.00027 30.0 10.0 95 48-154 172-273 (350)
425 cd08274 MDR9 Medium chain dehy 85.8 15 0.00033 29.3 10.5 92 48-154 175-272 (350)
426 cd08287 FDH_like_ADH3 formalde 85.8 3.5 7.5E-05 33.0 6.7 95 48-154 166-267 (345)
427 cd08235 iditol_2_DH_like L-idi 85.3 2.9 6.3E-05 33.4 6.1 94 48-154 163-264 (343)
428 cd05289 MDR_like_2 alcohol deh 85.2 12 0.00025 29.0 9.4 92 48-155 142-238 (309)
429 cd08260 Zn_ADH6 Alcohol dehydr 84.9 4.9 0.00011 32.2 7.2 93 48-154 163-263 (345)
430 PRK10669 putative cation:proto 84.7 12 0.00025 32.6 9.8 93 52-158 418-518 (558)
431 cd08262 Zn_ADH8 Alcohol dehydr 84.6 17 0.00036 29.0 10.1 96 48-155 159-264 (341)
432 cd05213 NAD_bind_Glutamyl_tRNA 84.3 10 0.00023 30.2 8.7 94 50-158 177-275 (311)
433 cd08291 ETR_like_1 2-enoyl thi 84.2 5 0.00011 31.9 6.9 92 50-155 142-242 (324)
434 PRK08618 ornithine cyclodeamin 84.1 20 0.00044 28.8 10.4 96 49-157 125-222 (325)
435 PRK09496 trkA potassium transp 83.9 24 0.00052 29.5 13.2 112 33-157 213-332 (453)
436 cd05286 QOR2 Quinone oxidoredu 83.9 5.3 0.00012 31.0 6.9 94 48-155 134-235 (320)
437 PF12692 Methyltransf_17: S-ad 83.7 4.5 9.8E-05 28.6 5.5 94 49-155 27-134 (160)
438 COG0287 TyrA Prephenate dehydr 83.7 6.6 0.00014 30.9 7.1 85 52-151 4-94 (279)
439 cd08241 QOR1 Quinone oxidoredu 83.6 5.5 0.00012 31.0 6.9 96 48-154 137-237 (323)
440 cd08269 Zn_ADH9 Alcohol dehydr 83.6 4.6 0.0001 31.6 6.5 95 48-155 127-229 (312)
441 COG0771 MurD UDP-N-acetylmuram 83.5 6.7 0.00015 33.1 7.4 74 51-136 7-81 (448)
442 PRK07502 cyclohexadienyl dehyd 83.0 9.6 0.00021 30.2 8.0 86 52-152 7-97 (307)
443 cd08282 PFDH_like Pseudomonas 82.9 23 0.00049 28.9 10.4 95 48-153 174-283 (375)
444 PRK06701 short chain dehydroge 82.7 21 0.00045 28.0 9.8 78 50-134 45-134 (290)
445 PF03269 DUF268: Caenorhabditi 82.7 1 2.3E-05 32.2 2.1 95 51-159 2-115 (177)
446 COG5379 BtaA S-adenosylmethion 82.6 5.4 0.00012 31.7 6.1 47 48-97 61-107 (414)
447 PRK05708 2-dehydropantoate 2-r 82.5 15 0.00031 29.3 8.9 97 52-157 3-106 (305)
448 PF02558 ApbA: Ketopantoate re 82.5 5.9 0.00013 27.6 6.0 99 54-158 1-104 (151)
449 PRK08265 short chain dehydroge 82.5 20 0.00043 27.5 10.4 74 51-134 6-90 (261)
450 TIGR02853 spore_dpaA dipicolin 82.5 6.8 0.00015 31.0 6.9 97 50-164 150-248 (287)
451 PF02086 MethyltransfD12: D12 81.9 2.4 5.2E-05 32.6 4.1 44 50-96 20-63 (260)
452 cd08246 crotonyl_coA_red croto 81.7 27 0.00059 28.6 10.8 104 48-154 191-314 (393)
453 COG2933 Predicted SAM-dependen 81.5 5.4 0.00012 31.1 5.7 71 48-133 209-279 (358)
454 TIGR02356 adenyl_thiF thiazole 81.4 10 0.00023 28.1 7.2 34 50-84 20-54 (202)
455 PF12242 Eno-Rase_NADH_b: NAD( 81.3 6.3 0.00014 24.4 4.9 36 49-84 37-73 (78)
456 KOG1209|consensus 81.3 15 0.00033 27.9 7.8 74 49-134 5-91 (289)
457 PRK07340 ornithine cyclodeamin 81.0 22 0.00049 28.3 9.4 93 49-156 123-217 (304)
458 PRK07806 short chain dehydroge 80.8 22 0.00047 26.8 10.3 99 50-155 5-134 (248)
459 cd05288 PGDH Prostaglandin deh 80.6 9 0.0002 30.3 7.2 93 48-154 143-243 (329)
460 PRK08217 fabG 3-ketoacyl-(acyl 80.3 14 0.0003 27.9 7.8 77 50-133 4-91 (253)
461 cd08289 MDR_yhfp_like Yhfp put 80.2 9.8 0.00021 30.0 7.3 93 50-155 146-243 (326)
462 PRK05854 short chain dehydroge 79.9 21 0.00045 28.4 9.0 79 51-134 14-103 (313)
463 cd08297 CAD3 Cinnamyl alcohol 79.8 13 0.00028 29.6 7.9 95 48-155 163-265 (341)
464 KOG2811|consensus 79.7 6.1 0.00013 32.3 5.7 47 49-96 181-230 (420)
465 PRK15001 SAM-dependent 23S rib 79.5 25 0.00054 29.1 9.3 89 53-154 47-141 (378)
466 PRK05867 short chain dehydroge 79.4 14 0.00031 28.0 7.7 78 50-134 8-96 (253)
467 PRK08339 short chain dehydroge 79.4 19 0.00042 27.6 8.5 79 50-134 7-95 (263)
468 PRK13771 putative alcohol dehy 79.3 12 0.00026 29.7 7.5 94 48-155 160-255 (334)
469 PRK06249 2-dehydropantoate 2-r 78.5 18 0.00038 28.8 8.2 98 51-156 5-107 (313)
470 cd08248 RTN4I1 Human Reticulon 78.4 12 0.00026 29.9 7.3 91 50-155 162-257 (350)
471 PRK06484 short chain dehydroge 78.4 37 0.00081 29.0 10.6 74 51-134 269-353 (520)
472 PRK07890 short chain dehydroge 78.2 21 0.00045 27.1 8.3 78 50-134 4-92 (258)
473 cd08243 quinone_oxidoreductase 78.0 30 0.00066 26.9 10.4 93 48-154 140-237 (320)
474 PRK12939 short chain dehydroge 77.9 27 0.00058 26.2 9.8 78 50-134 6-94 (250)
475 PRK06522 2-dehydropantoate 2-r 77.8 30 0.00064 27.1 9.3 95 53-156 2-101 (304)
476 cd08292 ETR_like_2 2-enoyl thi 77.5 9.7 0.00021 30.0 6.5 93 48-154 137-237 (324)
477 cd08244 MDR_enoyl_red Possible 77.4 12 0.00026 29.4 7.0 94 48-155 140-241 (324)
478 PRK06141 ornithine cyclodeamin 77.4 35 0.00076 27.3 9.5 94 49-154 123-218 (314)
479 PRK06139 short chain dehydroge 77.1 17 0.00037 29.2 7.8 78 50-134 6-94 (330)
480 PRK08703 short chain dehydroge 76.9 28 0.00061 26.1 8.6 78 50-133 5-96 (239)
481 PRK03369 murD UDP-N-acetylmura 76.7 11 0.00024 32.2 6.8 73 48-136 9-82 (488)
482 PRK08410 2-hydroxyacid dehydro 76.5 8.4 0.00018 30.8 5.7 34 50-85 144-178 (311)
483 PRK07478 short chain dehydroge 76.1 31 0.00067 26.1 8.7 77 51-134 6-93 (254)
484 cd08266 Zn_ADH_like1 Alcohol d 76.1 16 0.00035 28.7 7.4 95 48-155 164-265 (342)
485 KOG1201|consensus 75.7 25 0.00055 27.9 7.9 75 50-134 37-124 (300)
486 PRK06194 hypothetical protein; 75.7 22 0.00049 27.5 8.0 77 51-134 6-93 (287)
487 cd08267 MDR1 Medium chain dehy 75.6 36 0.00078 26.5 9.2 98 48-156 141-241 (319)
488 PRK05866 short chain dehydroge 75.2 32 0.00069 27.0 8.7 77 51-134 40-127 (293)
489 PF06460 NSP13: Coronavirus NS 75.2 11 0.00024 29.4 5.6 93 48-158 59-172 (299)
490 PRK00066 ldh L-lactate dehydro 74.9 42 0.00091 26.9 9.3 79 49-134 4-83 (315)
491 TIGR01751 crot-CoA-red crotony 74.8 35 0.00076 28.0 9.2 102 48-155 187-310 (398)
492 TIGR02823 oxido_YhdH putative 74.8 19 0.00042 28.3 7.5 92 48-154 142-240 (323)
493 PRK08589 short chain dehydroge 74.8 34 0.00073 26.4 8.7 77 50-134 5-92 (272)
494 PRK08945 putative oxoacyl-(acy 74.4 23 0.00049 26.7 7.5 79 49-133 10-101 (247)
495 PRK08340 glucose-1-dehydrogena 74.3 24 0.00052 26.9 7.7 74 53-134 2-86 (259)
496 cd08258 Zn_ADH4 Alcohol dehydr 74.3 41 0.00088 26.5 10.0 98 48-156 162-265 (306)
497 PF02153 PDH: Prephenate dehyd 74.2 6.6 0.00014 30.4 4.5 71 65-151 2-75 (258)
498 PRK06125 short chain dehydroge 73.9 37 0.0008 25.8 8.8 79 50-134 6-91 (259)
499 cd08276 MDR7 Medium chain dehy 73.9 16 0.00034 28.8 6.8 94 48-155 158-259 (336)
500 PRK07062 short chain dehydroge 73.7 38 0.00082 25.8 8.9 80 50-134 7-97 (265)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-32 Score=196.39 Aligned_cols=179 Identities=42% Similarity=0.645 Sum_probs=166.2
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.+|||+.|+++.+ ..+|.|.++++++|+.++.+++.+.|++.+. +.++.+|||||||+|+.+..+++..+ +|+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~ 98 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVV 98 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEE
Confidence 56899999999999 9999999999999999999999999999999 89999999999999999999999875 999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|..+.+.+.|++++.. ++..|+.++++|....+.+.++||.|++.+....+++.+.+.|++||++++.+. ..
T Consensus 99 siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG-~~ 172 (209)
T COG2518 99 SIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG-SG 172 (209)
T ss_pred EEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc-cC
Confidence 999999999999999988 346789999999999999889999999999999999999999999999999998 33
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeeccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
..+.+..+.+...+.+.. ..++++.|.|+.+
T Consensus 173 ~~q~l~~~~k~~~~~~~~-~~l~~v~~vPl~~ 203 (209)
T COG2518 173 PAQRLLRITKDGDGNFER-RDLFNVRFVPLVG 203 (209)
T ss_pred CcEEEEEEEEcCCCcEEE-eeeccceeeecCC
Confidence 467888888877777777 8999999999988
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.97 E-value=9.2e-31 Score=194.61 Aligned_cols=184 Identities=41% Similarity=0.619 Sum_probs=156.0
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|++|||+.|+++.+ ..+|.|.+++++.+.+++.|.+.+.+++.+. ++++.+|||||||+|+.+..+++..++.+.|+
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv 101 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV 101 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEE
Confidence 57899999999999 9999999999999999999999999999999 99999999999999999999999987777899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|.++.+.+.|++++...+ ..|+.++.+|....+.+.++||.|++......++..+.+.|++||++++.+.. .
T Consensus 102 ~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~ 175 (209)
T PF01135_consen 102 SVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-G 175 (209)
T ss_dssp EEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-S
T ss_pred EECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-C
Confidence 99999999999999998743 56899999998888777789999999999999999999999999999999987 6
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
..+.+..+.+...+.+.. ....++.|+|+.+.+
T Consensus 176 ~~~~l~~~~k~~~g~~~~-~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 176 GSQRLVRITKKGDGEFSR-EELFPVRFVPLVGGE 208 (209)
T ss_dssp SSEEEEEEEEETTTEEEE-EEEEEE---B-BSCC
T ss_pred CceEEEEEEEeCCCcEEE-EEEeeEEEEeccCCC
Confidence 678899999988889998 999999999998754
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.96 E-value=7.9e-28 Score=180.61 Aligned_cols=181 Identities=39% Similarity=0.596 Sum_probs=158.9
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|+.|||+.|+|+.+ ..+|.|.+++++.|+.++.+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEE
Confidence 57899999999998 9999999999999999999999999999997 78999999999999999999998875567999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ..+++++.+|....+.+.++||+|++.....++++.+.+.|||||++++.....
T Consensus 106 ~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~- 179 (212)
T PRK13942 106 TIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY- 179 (212)
T ss_pred EEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC-
Confidence 99999999999999987643 468999999987766666889999999988899999999999999999987654
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
.+.+..+.+. .+.+.. ..++++.|+|+.+.
T Consensus 180 -~~~~~~~~~~-~~~~~~-~~~~~~~f~~~~~~ 209 (212)
T PRK13942 180 -SQELIRVEKD-NGKIIK-KKLGEVAFVPLIGK 209 (212)
T ss_pred -CcEEEEEEEE-CCEEEE-EEeccEEEEecccC
Confidence 4666666664 366777 88999999999765
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.96 E-value=2.2e-27 Score=177.47 Aligned_cols=181 Identities=38% Similarity=0.501 Sum_probs=154.4
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.+|||+.|+++.+ ..+|.|.++++..+..++.+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEE
Confidence 57899999999999 8999999999999999999999999988887 67889999999999999999998875457999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ...+++++.+|+........+||+|+++....++++.+.+.|+|||++++.+....
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~ 177 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV 177 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC
Confidence 99999999999999987643 12368999999876655557899999999999999999999999999999876553
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLY 190 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 190 (204)
.+.+..+.+. .+.+.. +.+.++.|+|+.
T Consensus 178 -~~~~~~~~~~-~~~~~~-~~~~~~~f~pl~ 205 (205)
T PRK13944 178 -GQVLYKVVKR-GEKVEK-RAITYVLFVPLR 205 (205)
T ss_pred -ceEEEEEEEe-CCEEEE-EEeceEEEEecC
Confidence 3556666664 456777 888999999974
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.96 E-value=4.9e-27 Score=176.96 Aligned_cols=184 Identities=40% Similarity=0.593 Sum_probs=158.9
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.++||+.|+++.+ ..+|.+.+.+++.+..+..+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..+..++|+
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~ 106 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 57899999999988 8999999999999999999999999999887 78899999999999999999999875556899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.|++++...+ ..+++++.+|.........+||+|+++.....+++.+.+.|+|||++++.+..
T Consensus 107 ~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~-- 179 (215)
T TIGR00080 107 SIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-- 179 (215)
T ss_pred EEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--
Confidence 99999999999999988743 46899999998765555578999999999899999999999999999998766
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccchhh
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQ 195 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 195 (204)
..+.+..+.+ ..+.+.. ..+.+..|+|+.+.+++
T Consensus 180 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~pl~~~~~~ 213 (215)
T TIGR00080 180 YLQVLKRAEK-RGGEIII-KDVEPVAFVPLVGGEGF 213 (215)
T ss_pred CceEEEEEEE-eCCEEEE-EEeeeEEEEeCCCCccC
Confidence 3455655555 3466777 88999999999887654
No 6
>KOG1661|consensus
Probab=99.94 E-value=4.2e-26 Score=164.37 Aligned_cols=197 Identities=46% Similarity=0.747 Sum_probs=177.2
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCc-eE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RV 78 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v 78 (204)
|+++.|..|.|..+ ..+|.|+++.+|++.+++.+++++.+++.|..++.|+.+.||+|+|+|+++..++...+..+ ..
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 67899999999988 99999999999999999999999999999999999999999999999999999998765433 45
Q ss_pred EEEEcCHHHHHHHHHHhhhcC-----ccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEE
Q psy10572 79 YGVEHVMELAESSIKNIDKGN-----SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 79 ~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+|||.-+.+++.+++++..+. ...+...++.++.+|......+..+||.|++.+....+++.+...|++||.+++
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEE
Confidence 999999999999999997754 223345678899999999988889999999999999999999999999999999
Q ss_pred EecCCCCcceEEEEeecCCceEEEeeeeeeeeeeecccchhhhhh
Q psy10572 154 PVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKK 198 (204)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~ 198 (204)
.......-+.++..++...+.... +..+.+.++|++....+...
T Consensus 192 p~~~~~~~q~~~~~dk~~~gki~~-~~~f~v~yvPlt~~~~q~~~ 235 (237)
T KOG1661|consen 192 PVGQDGGTQYLRQIDKNEDGKIKL-RTLFSVRYVPLTSRESQPSR 235 (237)
T ss_pred eecccCceeEEEeecccccCceee-eEeeceEEEeccccccccCC
Confidence 998777789999999998888888 89999999999998877654
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.94 E-value=1.4e-24 Score=163.32 Aligned_cols=180 Identities=35% Similarity=0.521 Sum_probs=153.6
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..+||+.|+|+.+ ..+|.|...+++.+..++.+.+...+.+.+. +.++.+|||+|||+|..+..+++... +++
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~ 104 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVF 104 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEE
Confidence 56799999999988 9999999999999999999999999998886 78889999999999999998887753 899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ..++.+..+|......+.++||+|+++....++++.+.+.|+|||.+++.+. ..
T Consensus 105 ~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~ 178 (212)
T PRK00312 105 SVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GE 178 (212)
T ss_pred EEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CC
Confidence 99999999999999987743 4568999999766554457899999999988999999999999999999887 33
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
..+....+.+ ..+.+.. ..++++.|.|+....
T Consensus 179 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 179 EQQLLTRVRK-RGGRFER-EVLEEVRFVPLVKGE 210 (212)
T ss_pred CceEEEEEEE-cCCeEEE-EEEccEEEEecCCCC
Confidence 4456666666 4556777 889999999998653
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.89 E-value=1.5e-21 Score=153.93 Aligned_cols=183 Identities=27% Similarity=0.421 Sum_probs=140.0
Q ss_pred Cccccccccccccc--CCccccccccc-cCC---cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC
Q psy10572 1 MLRVDRKNFFTRVV--NEPYRIKSRQI-GYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 74 (204)
|++|||+.|+|+.+ ..+|.|.++++ ..+ ..++.+.+...+++.+. ++++.+|||+|||+|.++..+++..+.
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 67899999999876 67899998875 444 46678888888888876 778899999999999999999998744
Q ss_pred CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 75 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+.|+++|.++.+++.|++++...+ ..++.++.+|+.......++||+|++.......+..+.+.|+|||++++.
T Consensus 105 ~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 105 KGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 4689999999999999999987643 45789999997765554567999999988888889999999999999987
Q ss_pred ecCCC-CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 155 VGEPF-KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
..... ..+......+ ..+.+.. ...+...|++..+.
T Consensus 180 ~~~~l~~~~~~~~~~r-~~~~~~~-~~~~~~~~l~~~G~ 216 (322)
T PRK13943 180 INLKLSRRQPAFLFKK-KDPYLVG-NYKLETRFIKAGGN 216 (322)
T ss_pred eCCccCCCCceEEEEe-cCCCceE-EEEEEeeEEcccch
Confidence 65431 1222333333 2333444 45566667766443
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=4.1e-18 Score=128.32 Aligned_cols=116 Identities=25% Similarity=0.399 Sum_probs=97.8
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
+...+++.+. +.++.+|||+|||+|.++..+++..+ .++++++|+|+.|++.|++++...+ ..+++++++|+
T Consensus 39 Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dA 110 (238)
T COG2226 39 WRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDA 110 (238)
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEech
Confidence 3444555554 45899999999999999999999985 7899999999999999999987632 34599999999
Q ss_pred CCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...++++++||+|.+..+++. .++++.|+|||||++++.-.+..
T Consensus 111 e~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 111 ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred hhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 999999999999999888765 56899999999999988665554
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=1.1e-17 Score=113.28 Aligned_cols=101 Identities=30% Similarity=0.526 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
|+.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.++++..... ..++++++++|+........+||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999976 67899999999999999999984422 24799999999811222235699999
Q ss_pred ECC-Cccc---------hhHHHHHhcCCCcEEEEEe
Q psy10572 130 VSP-SYFT---------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 130 ~~~-~~~~---------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.. .... +++.+.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 3322 3678999999999999865
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=4.4e-18 Score=129.13 Aligned_cols=114 Identities=26% Similarity=0.438 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++..++.++++++|+|+.|++.|+++....+ ..+++++++|+...
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~l 110 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB-
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHh
Confidence 4455554 6788899999999999999999987677899999999999999999987643 35899999999988
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++++||.|++..+++. .++++.++|||||++++...+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 888899999999887765 45799999999999988655444
No 12
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.73 E-value=2e-16 Score=113.55 Aligned_cols=126 Identities=26% Similarity=0.337 Sum_probs=108.7
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
..+..++.+++....+..|. +.++..++|||||+|..+..++... +.++++++|.++.+++..++|+++.+ .
T Consensus 12 ~~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg-----~ 83 (187)
T COG2242 12 DEGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFG-----V 83 (187)
T ss_pred CCCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-----C
Confidence 33566889999999999998 8999999999999999999999554 88999999999999999999999844 6
Q ss_pred cceEEEEecCCCCCCCCCCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 106 GRVQFVVWNGKHGYEREAPYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.++.+++.+......++|.|++...- +.+++.+...|+|||++++......
T Consensus 84 ~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 84 DNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 89999999987765554579999998763 3478999999999999999776654
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=4.8e-16 Score=120.30 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..++.++++|+|+|+.|++.|+++...... ....+++++.+|+...++++++||.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 56788999999999999999988765567999999999999999877532100 0135799999998877777789999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++..+++ +++++.++|||||++++..+...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 999887765 45899999999999999876654
No 14
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.71 E-value=4.1e-16 Score=113.34 Aligned_cols=114 Identities=24% Similarity=0.438 Sum_probs=90.9
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+.. .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..+. ..+++++..|..
T Consensus 20 t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~ 91 (170)
T PF05175_consen 20 TRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTT
T ss_pred HHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccc
Confidence 4456666663 377899999999999999999987 66689999999999999999998865 334999999987
Q ss_pred CCCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.... ..+||+|++|++++. +++.+.++|+|||.+++......
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 6544 578999999998743 45788899999999988776554
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=6.1e-16 Score=113.56 Aligned_cols=105 Identities=24% Similarity=0.275 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|..+..+++.. +.++++++|.++.+++.|+++.+..+ .++++++.+|+.+... .++||+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCccE
Confidence 4568899999999999999999876 67899999999999999999988754 3569999999876544 578999
Q ss_pred EEECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.. ...+++.+.++|+|||.+++......
T Consensus 116 V~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 116 VTSRAVASLSDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred EEEccccCHHHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 999764 23577899999999999999876654
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=7.1e-16 Score=117.49 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...++..+. +.++.+|||+|||+|..+..+++..++.++++|+|+++.+++.++++..... .++++++.+|..
T Consensus 34 ~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~ 106 (231)
T TIGR02752 34 RKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAM 106 (231)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechh
Confidence 344555554 5778899999999999999999887566799999999999999999886532 357899999987
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
....+.++||+|+++..+++ +++++.++|+|||.+++.....
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 66556678999998876654 4578899999999998866543
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=3.4e-16 Score=111.75 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
+.+.+|||+|||+|.++..+++...+.++++|+|+++.+++.|+.+++..+ .++++++++|+.... .+ +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhccccccC-CCee
Confidence 467899999999999999999655467899999999999999999887643 458999999988733 22 6899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++..++++ +++.+.++|+++|.+++..+.
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987755 457899999999999997766
No 18
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.70 E-value=1.3e-15 Score=104.73 Aligned_cols=115 Identities=27% Similarity=0.386 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
..+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.... ..+++++.+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEec
Confidence 344555666554 5667899999999999999999987 55799999999999999999887643 357888888
Q ss_pred cCCCCC-CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGY-EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~-~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|..... ....+||.|++...... +++.+.+.|+|||.+++.+.
T Consensus 77 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 77 DAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 765322 22358999999775544 77899999999999998764
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.69 E-value=1.2e-15 Score=119.44 Aligned_cols=139 Identities=23% Similarity=0.292 Sum_probs=105.8
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 92 (204)
...|....+..+.+.+++.+.....+...+...+ .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+
T Consensus 84 ~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~ 162 (284)
T TIGR03533 84 EAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAE 162 (284)
T ss_pred CCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 3444566677777888887776665555544222 345799999999999999999987 6679999999999999999
Q ss_pred HHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHH
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKL 141 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~ 141 (204)
+++..++ ...++.++.+|+.... +..+||+|++|+++.. +++.+
T Consensus 163 ~n~~~~~----~~~~i~~~~~D~~~~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a 237 (284)
T TIGR03533 163 INIERHG----LEDRVTLIQSDLFAAL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA 237 (284)
T ss_pred HHHHHcC----CCCcEEEEECchhhcc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence 9988754 1247899999976543 3457999999977521 24566
Q ss_pred HHhcCCCcEEEEEecCCC
Q psy10572 142 LDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~~~~~ 159 (204)
.++|+|||++++.+....
T Consensus 238 ~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 238 ADHLNENGVLVVEVGNSM 255 (284)
T ss_pred HHhcCCCCEEEEEECcCH
Confidence 789999999999887644
No 20
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.68 E-value=7.5e-16 Score=113.69 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=93.5
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..++.+.+...++..+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.... ..++
T Consensus 12 ~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i 83 (187)
T PRK08287 12 VPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNI 83 (187)
T ss_pred CCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCe
Confidence 34556666666777775 6688899999999999999999886 66799999999999999999987643 3468
Q ss_pred EEEEecCCCCCCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEec
Q psy10572 109 QFVVWNGKHGYEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 109 ~~~~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+++.+|.... . ..+||+|+++.... .+++.+.+.|+|||.+++...
T Consensus 84 ~~~~~d~~~~-~-~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 84 DIIPGEAPIE-L-PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEecCchhh-c-CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 8888886432 2 25799999876533 366788999999999998653
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.67 E-value=2.1e-15 Score=120.98 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. +++++|+|+++.+++.++++....+ ..++++++.+|+....++.++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEE
Confidence 567899999999999999999875 3599999999999999998876643 1347999999988776777899999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++....++ +++++.++|||||.+++..+.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99877655 457899999999999997654
No 22
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.67 E-value=9.4e-16 Score=123.77 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=108.7
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
...|.+..+....+..++.+.....+-..+ ..+.++.+|||+|||+|.++..+++.. +.++++++|+|+.+++.|+++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL-~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPETEHLVEAVL-ARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCccHHHHHHHhh-hccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 556677777777788887666554443333 334566799999999999999998876 677999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccc-------------------------------hhHHHH
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFT-------------------------------IPQKLL 142 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-------------------------------~~~~~~ 142 (204)
+..+. .++.++++|+.+... ..++||+|++|+++.. +++.+.
T Consensus 295 a~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 295 AADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 87643 378999999765432 2357999999998621 224556
Q ss_pred HhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 143 DQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
+.|+|||.+++.+...+.......+.
T Consensus 369 ~~LkpgG~lilEiG~~Q~e~V~~ll~ 394 (423)
T PRK14966 369 DRLAEGGFLLLEHGFDQGAAVRGVLA 394 (423)
T ss_pred HhcCCCcEEEEEECccHHHHHHHHHH
Confidence 88999999999888776554443333
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=1.8e-15 Score=116.94 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=83.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.|++. +++++.+|+...
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~ 84 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW 84 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC
Confidence 3444443 4677899999999999999999987 667999999999999999652 477888887654
Q ss_pred CCCCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecC
Q psy10572 119 YEREAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+.++||+|+++..++++ ++++.+.|||||.+++.++.
T Consensus 85 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 85 -KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 345789999999887663 46888999999999998754
No 24
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=4.3e-15 Score=117.30 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=107.6
Q ss_pred cccccc---CCccccccccccCCcccCChHHHHHHHHHHhccCC--CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 9 FFTRVV---NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 9 ~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
-.|-+| ...|....+..+.+.+++.+.....+...+...+. +..+|||+|||+|.++..+++.. +..+++++|+
T Consensus 87 ~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDi 165 (307)
T PRK11805 87 RIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDI 165 (307)
T ss_pred CccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeC
Confidence 344444 34455666777778888777776655555442222 22689999999999999999987 6779999999
Q ss_pred CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCcc----------------------------
Q psy10572 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF---------------------------- 135 (204)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---------------------------- 135 (204)
|+.+++.|++++..++ ...+++++++|+.+.. +..+||+|++|+++.
T Consensus 166 s~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 166 SPDALAVAEINIERHG----LEDRVTLIESDLFAAL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred CHHHHHHHHHHHHHhC----CCCcEEEEECchhhhC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 9999999999988743 1246999999976543 335799999997652
Q ss_pred ---chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 136 ---TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 136 ---~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++.+.++|+|||.+++.+....
T Consensus 241 ~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 241 LVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 124677789999999999887653
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=1.6e-15 Score=99.23 Aligned_cols=89 Identities=26% Similarity=0.414 Sum_probs=74.3
Q ss_pred EEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCc
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSY 134 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 134 (204)
||+|||+|..+..+++. +..+++++|+++.+++.++++... .++.+..+|....++++++||+|++...+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence 79999999999999998 346999999999999999998754 34669999988888888999999999888
Q ss_pred cc------hhHHHHHhcCCCcEEEE
Q psy10572 135 FT------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 135 ~~------~~~~~~~~Lk~gG~l~~ 153 (204)
++ .++++.++|||||++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 76 45799999999999986
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.65 E-value=2.3e-15 Score=110.29 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|.++..++... +.++++++|.++.+++.++++.+..+ .++++++.+|+... ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence 47899999999999999998765 66799999999999999998887643 35799999997764 3357899999
Q ss_pred ECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++.. +..+.+.+.++|+|||.+++......
T Consensus 115 s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 115 SRALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred ehhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 9862 22355788899999999999766554
No 27
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=114.91 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=95.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 125 (204)
.....+|||+|||+|.+++.++.+. +.+++++||+++.+.+.|+++++.+. ...+++++++|+.... ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhhhccccccc
Confidence 3447899999999999999999997 45899999999999999999998854 3468999999977433 333579
Q ss_pred eEEEECCCccc------------------------hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecC
Q psy10572 126 DIIHVSPSYFT------------------------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLA 171 (204)
Q Consensus 126 D~v~~~~~~~~------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~ 171 (204)
|+|++|+++.. +++.+.++||+||.+.++.+.......+..+.+..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYN 186 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcC
Confidence 99999999832 34677799999999999888776544444444433
No 28
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=7.9e-15 Score=118.11 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+.+|||+|||+|.++..+++.. |..+++++|.|+.+++.++.+++.+... ...+++++..|..... +..+||+|+
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-~~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-EPFRFNAVL 303 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-CCCCEEEEE
Confidence 34699999999999999999987 7789999999999999999998765310 1236888888876543 335799999
Q ss_pred ECCCccc-----------hhHHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT-----------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++++. ++..+.++|+|||.++++...
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 9999853 346788999999999998643
No 29
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=9.2e-15 Score=113.86 Aligned_cols=146 Identities=22% Similarity=0.308 Sum_probs=110.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCCCCC-EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
...|....+....+..++.++....+-..+. ...... +|||+|||+|.+++.+++.+ +.++|+|+|+|+.+++.|+.
T Consensus 75 ~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 75 SAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARE 152 (280)
T ss_pred cCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHH
Confidence 3456677777788888888887766655432 122222 79999999999999999998 77899999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHHH
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKLL 142 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~ 142 (204)
|+..++ ..++.++..|+..... ++||+|++|+++-. +...+.
T Consensus 153 Na~~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 153 NAERNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHHcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 998865 2566777778666544 38999999998711 235777
Q ss_pred HhcCCCcEEEEEecCCCCcceEEEEee
Q psy10572 143 DQLVPGGRMVMPVGEPFKGQNLTIIDK 169 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 169 (204)
+.|+|||.+++.+...+.......+.+
T Consensus 226 ~~l~~~g~l~le~g~~q~~~v~~~~~~ 252 (280)
T COG2890 226 DILKPGGVLILEIGLTQGEAVKALFED 252 (280)
T ss_pred HHcCCCcEEEEEECCCcHHHHHHHHHh
Confidence 999999999999987775544444333
No 30
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.63 E-value=4.8e-15 Score=114.17 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=96.4
Q ss_pred cccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
|++..+..+.+..++.+.....+...+......+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++.++..
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3444444444444444443322222222112345699999999999999999987 667999999999999999999876
Q ss_pred cCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------------------------hhHHHHHhc
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------------------------IPQKLLDQL 145 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~~~~~L 145 (204)
.+ ..++.++.+|+... .+.++||+|++|+++.. +++.+.++|
T Consensus 134 ~~-----~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 134 LG-----LDNVTFLQSDWFEP-LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred cC-----CCeEEEEECchhcc-CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 43 34789999997764 34578999999887532 235777899
Q ss_pred CCCcEEEEEecCCC
Q psy10572 146 VPGGRMVMPVGEPF 159 (204)
Q Consensus 146 k~gG~l~~~~~~~~ 159 (204)
+|||.+++......
T Consensus 208 ~~gG~~~~~~~~~~ 221 (251)
T TIGR03534 208 KPGGWLLLEIGYDQ 221 (251)
T ss_pred ccCCEEEEEECccH
Confidence 99999999875544
No 31
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1e-14 Score=112.27 Aligned_cols=112 Identities=25% Similarity=0.353 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+.+++.+. ...+.+|||+|||.|.+++.+++.. |..+++-+|.|..+++.++.++..|. ..+..+...|..
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~ 218 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLY 218 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEeccc
Confidence 444555554 3445599999999999999999998 78899999999999999999999865 334467788876
Q ss_pred CCCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.... +||.|++|++++. ++..+.++|++||.|+++....
T Consensus 219 ~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 219 EPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred ccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 66543 8999999999975 5578889999999999988733
No 32
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.62 E-value=2e-15 Score=109.97 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.....|.|+|||+|..+..++++. |.+.++|+|-|+.|++.|+.+ .++.+|..+|+.. +.++.+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhh-cCCCCccch
Confidence 4567799999999999999999999 889999999999999999776 4689999999655 566688999
Q ss_pred EEECCCccch------hHHHHHhcCCCcEEEEEecCCCC
Q psy10572 128 IHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 128 v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
+++|+.++++ +.++...|.|||.|.+.++.+..
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9999999874 47888999999999999887753
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.62 E-value=8.5e-16 Score=114.23 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-++.+|||+|||-|.++..+++.. ++|+|+|.++.+++.|+.+....+ -++.+.+....+.....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEE
Confidence 378999999999999999999975 499999999999999999887643 23556666655544444799999
Q ss_pred EECCCccchh------HHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFTIP------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~~~------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|..+++|++ ..+.+.+||||++++++.+..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9999988744 678899999999999988765
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=9.9e-15 Score=112.99 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +.++++|+|+++.+++.++++. +++.++.+|+.... +..+||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC-CCCCccE
Confidence 4677899999999999999999887 6679999999999999998763 35788888876443 3468999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+++ +++++.+.|+|||.+++.++..
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999988865 4578899999999999976543
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.62 E-value=9.3e-15 Score=113.27 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+. ++++.+|||+|||+|..+..+++.. .++++++|+++.+++.++++... ..++.+..+|+.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence 445555554 6888999999999999998888754 36999999999999999987643 247899999987
Q ss_pred CCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...++.++||+|++...+.+ +++++.++|||||.+++..+.
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 66666689999999654432 457889999999999997653
No 36
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=108.21 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=94.6
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.++...+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|.++.+++.+++++...+ ...++.
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~ 95 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIV 95 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeE
Confidence 3555666655556555 7888999999999999999998876556799999999999999999987643 135788
Q ss_pred EEEecCCCCCCC-CCCeeEEEECCCc---cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 110 FVVWNGKHGYER-EAPYDIIHVSPSY---FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 110 ~~~~d~~~~~~~-~~~~D~v~~~~~~---~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++.+|..+.... .+.||.|+++... ..+++.+.+.|+|||++++.....
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 888887643222 3579999996543 446788899999999998855433
No 37
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.62 E-value=1.4e-14 Score=113.50 Aligned_cols=142 Identities=25% Similarity=0.314 Sum_probs=103.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 92 (204)
...|++..+..+.+..++.+.....+-..+.... .+..+|||+|||+|.++..++... +..+++++|+|+.+++.|+
T Consensus 77 ~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~ 155 (284)
T TIGR00536 77 SKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAE 155 (284)
T ss_pred cceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 3455566666777777766554444333332211 223699999999999999999987 6679999999999999999
Q ss_pred HHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHH
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKL 141 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~ 141 (204)
+++..++ ...++.++.+|+.+.. +..+||+|++|+++.. +++.+
T Consensus 156 ~n~~~~~----~~~~v~~~~~d~~~~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a 230 (284)
T TIGR00536 156 ENAEKNQ----LEHRVEFIQSNLFEPL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELA 230 (284)
T ss_pred HHHHHcC----CCCcEEEEECchhccC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHH
Confidence 9987644 1235999999977643 3347999999976521 23567
Q ss_pred HHhcCCCcEEEEEecCCCCcc
Q psy10572 142 LDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
.++|+|||.+++.+...+...
T Consensus 231 ~~~L~~gG~l~~e~g~~q~~~ 251 (284)
T TIGR00536 231 PDYLKPNGFLVCEIGNWQQKS 251 (284)
T ss_pred HHhccCCCEEEEEECccHHHH
Confidence 789999999999998776443
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=112.02 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
.+...+...+.++.+|||+|||+|..+..+++.. .+.++++|+|+|+.+++.|++++...+ ...+++++.+|+..
T Consensus 45 ~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~ 120 (247)
T PRK15451 45 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRD 120 (247)
T ss_pred HHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhh
Confidence 3333333345788899999999999998888753 266799999999999999999987633 12478999999776
Q ss_pred CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
... ..+|+|+++..+++ +++++.+.|+|||.+++..
T Consensus 121 ~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 121 IAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 544 35899998866543 5689999999999999965
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=1.3e-14 Score=107.80 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++..... ..++++...|+...
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~ 90 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNL 90 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhC
Confidence 3444444 4466899999999999999999864 499999999999999998877643 34688888887654
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~ 154 (204)
..+ ++||+|+++..+++ +++.+.++|+|||.+++.
T Consensus 91 ~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 91 TFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 443 57999999877643 457888999999996553
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=1.4e-14 Score=112.99 Aligned_cols=103 Identities=27% Similarity=0.395 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++....+ .++++++.+|+.....+.++||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 5788999999999999988888776566789999999999999999877633 35788999998765556678999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++..+++ +++++.++|||||++++..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999876543 5689999999999999864
No 41
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.61 E-value=7.3e-15 Score=116.28 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||||||+|.++..+++. +++|+|+|.++.+++.|+.+..... ...+++++.+++.+.....++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEEE
Confidence 4569999999999999988874 3599999999999999998765422 12478999998766555557899999
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+..++++ +++.+.++|||||.+++.+.+..
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9988776 45889999999999999987654
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=6.5e-15 Score=109.89 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC-CCCC--CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG-KHGY--EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~ 125 (204)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.... .+++.++++|+ .... .+.++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence 467899999999999999999887 66799999999999999999887643 36799999997 3222 445789
Q ss_pred eEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.|+++.+.+ .+++.+.++|+|||.+++.+....
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 9999875432 256899999999999999775443
No 43
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=5.8e-15 Score=106.97 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=88.0
Q ss_pred ccccccccCCcccCChHHHHHHHHH-HhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 19 RIKSRQIGYGADISSPHIHAQMLEL-LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
.+...|+++........-...++.. +. -..-.++||+|||.|.++..|+.++. +++++|+++.+++.|++++..
T Consensus 13 la~~DPW~~~~~~YE~~K~~~~l~aaLp--~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 13 LANDDPWGFETSWYERRKYRATLLAALP--RRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HTSSSGGGTTT-HHHHHHHHHHHHHHHT--TSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT
T ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHhcC--ccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC
Confidence 4556667765554444333334332 32 24447999999999999999999884 999999999999999999875
Q ss_pred cCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+++++++.++...+ +.++||+|++....+. .+..+...|+|||.+++..+.+
T Consensus 88 -------~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 88 -------LPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp --------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred -------CCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 468999999987654 5589999999877654 3366778899999999977643
No 44
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.61 E-value=2.3e-14 Score=106.49 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=95.7
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.+..++.+.+...+...+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ ..
T Consensus 19 ~~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~ 90 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VK 90 (196)
T ss_pred CCCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CC
Confidence 4555677777777777775 6788899999999999999998765 56799999999999999999987643 35
Q ss_pred ceEEEEecCCCCCCC-CCCeeEEEECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 107 RVQFVVWNGKHGYER-EAPYDIIHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~-~~~~D~v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++.+|+...... ...+|.++.... ...+++.+.++|+|||.+++..++..
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 91 NVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred CeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 789999886542111 123576666433 24577899999999999999877653
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=1.2e-14 Score=112.35 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++...+ ..++++++++|..+.. ...++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999864 499999999999999999887633 1357899998876432 33478999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|++..++++ +++.+.++|||||++++..++..
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 999887755 45789999999999998776643
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.60 E-value=1.3e-14 Score=111.89 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+..+|||+|||+|.++..+.... .+++++|+|+.+++.++.+.. ...++.+|+....++.++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEE
Confidence 46799999999999998887643 599999999999999987642 24577888776666667899999
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++..+++ ++.++.++|+|||.++++++...
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 9887654 46889999999999999886654
No 47
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.60 E-value=3.6e-14 Score=109.14 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=100.2
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC---CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI---KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
...|.+..+..+.+.++..+.. ..+++.+...+ .+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 4455566666777777644433 33333332222 234589999999999999999876 556899999999999999
Q ss_pred HHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEECCCcc--------------------------------ch
Q psy10572 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYF--------------------------------TI 137 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~--------------------------------~~ 137 (204)
++++..++ .+++.+|+.+.... .++||+|++|+++. .+
T Consensus 127 ~~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i 198 (251)
T TIGR03704 127 RRNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198 (251)
T ss_pred HHHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHH
Confidence 99987632 47888887653321 25799999998863 12
Q ss_pred hHHHHHhcCCCcEEEEEecCCCCcceEEEE
Q psy10572 138 PQKLLDQLVPGGRMVMPVGEPFKGQNLTII 167 (204)
Q Consensus 138 ~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 167 (204)
++.+.++|+|||++++.+...+.......+
T Consensus 199 ~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred HHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 345668999999999998876654433333
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.59 E-value=1.3e-14 Score=107.63 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~ 125 (204)
+....|||||||+|.++..+++.. +..+++|+|+++.+++.|+.++...+ ..+++++++|+... ..+.+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCce
Confidence 456799999999999999999987 77899999999999999998887643 45899999997642 2344689
Q ss_pred eEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.|+++.+.+ .+++.+.++|||||.|++.+....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 9999987553 256889999999999999876554
No 49
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=6.8e-15 Score=100.31 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 128 (204)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++.... ...+++++.+|..... .+.++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEE
Confidence 4689999999999999999886 4599999999999999999988743 1357999999976543 456889999
Q ss_pred EECCCccc--------------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT--------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++|+++.. +++.+.++|+|||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998853 35788999999999999875
No 50
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.3e-14 Score=111.34 Aligned_cols=126 Identities=24% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.||.+|||||||.|.+++.+++.. +++|+|+++|++..+.++++++..+ ...+++++..|..+.. ++||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEeccccccc---cccce
Confidence 7999999999999999999999986 3699999999999999999988754 1248999999876654 34999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeeeeeeeeec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 189 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 189 (204)
|++...+++ +++.+.+.|+|||.+++.+......... ....|.. .-+++-..+|-
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~-~yiFPgG~lPs 203 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFID-KYIFPGGELPS 203 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHH-HhCCCCCcCCC
Confidence 999887765 5689999999999999877655432221 3334444 45555556663
No 51
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.9e-14 Score=111.43 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=88.2
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
|....+|.|.+.++. ..++.+.....++.+|||+|||+|.+++..++... ..++|+|++|.+++.++.|+..|+
T Consensus 136 DPGlAFGTG~HpTT~----lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~ 209 (300)
T COG2264 136 DPGLAFGTGTHPTTS----LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNG 209 (300)
T ss_pred ccccccCCCCChhHH----HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcC
Confidence 334455666665444 33444444457999999999999999999999753 489999999999999999999866
Q ss_pred ccccCccceEEEEecCCCCCCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEe
Q psy10572 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+ ..++....+ .......++||+|++|.... .+...+.+.|+|||+++++=
T Consensus 210 v~----~~~~~~~~~-~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 210 VE----LLVQAKGFL-LLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred Cc----hhhhccccc-chhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 21 112222222 12223346899999997433 35578899999999999954
No 52
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.58 E-value=4.4e-14 Score=109.55 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..++...++.+.++++|+++.+++.++++++..+ ..++.++..|........+.||.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCE
Confidence 6788999999999999999999887555799999999999999999998744 35788898886643333356999
Q ss_pred EEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 128 IHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 128 v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|++++++.. +++.+.+.|||||+++.++++....
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 999877532 4467778999999999998877654
No 53
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.58 E-value=1.6e-14 Score=121.23 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=106.0
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhcc-------------------------CCCCCEEEEEcCCCcHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDK-------------------------IKPGARILDIGSGSGYLTACLA 69 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------------~~~~~~vLdiG~G~G~~~~~l~ 69 (204)
...|+...+..+.+..++.++....+-..+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 567788888899999998888765554333211 0134689999999999999999
Q ss_pred HHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------
Q psy10572 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------- 136 (204)
Q Consensus 70 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------- 136 (204)
... +.++++++|+|+.+++.|+.++..++ ...++.++.+|+.... +.++||+|++|+++..
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENI-EKQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhC-cCCCccEEEECCCCCCchhhhhcCchhhc
Confidence 887 67799999999999999999987643 1246889999976543 3457999999987521
Q ss_pred -------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 137 -------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 137 -------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++.+.++|+|||.+++.+...+
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q 273 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ 273 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence 22466689999999999876554
No 54
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=4.6e-14 Score=104.78 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=78.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++....+ . ++.+...|....
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~ 89 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAA 89 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhc
Confidence 3444444 4456799999999999999999853 499999999999999988876533 1 356666775433
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+ ++||+|+++..+++ +++.+.++|+|||.+++..
T Consensus 90 ~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 ALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 333 57999998876643 4578889999999966544
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.58 E-value=5.8e-14 Score=112.28 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=86.0
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.++.+++.+. -..+++..|...
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~------l~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG------LEGEVFASNVFS 256 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CCCEEEEccccc
Confidence 44455444 2345689999999999999999986 66799999999999999999988754 134667777654
Q ss_pred CCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.. .++||+|++|+++++ ++..+.++|+|||.+++.....
T Consensus 257 ~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 257 DI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred cc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 32 468999999998864 4477889999999999977653
No 56
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.58 E-value=7.5e-14 Score=106.92 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+|||+|||+|..+..+++.+. +.++++|+|+|+.+++.|++++.... ...+++++++|+.....+ .+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCCC--CCC
Confidence 46778999999999999999988752 56799999999999999999886532 124689999998765443 589
Q ss_pred EEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++..+++ +++++.+.|+|||.+++...
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9988877655 35788899999999999754
No 57
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=6.8e-14 Score=111.27 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||||||+|.++..++... + ..|+|+|+|+.++..++....... ...++.++.+++..... .++||+|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 467899999999999999998875 3 269999999998876544322211 12478999988776554 5789999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++...+++ +++++.+.|+|||.+++...
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99887765 45899999999999998753
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=5.7e-14 Score=117.70 Aligned_cols=110 Identities=19% Similarity=0.338 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. +.++.+|||+|||+|..+..+++.. +++++|+|+|+.+++.|+++.... ..++++..+|+..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~ 325 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK 325 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence 33444443 5677899999999999999998875 359999999999999998876431 2478999999877
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+.+ +++++.++|+|||.+++..+.
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 6666678999999877765 458999999999999997653
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.58 E-value=8.8e-14 Score=108.48 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=85.8
Q ss_pred HHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCC--CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 38 AQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 38 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
..+.+.+...+ .+..+|||+|||+|.++..+++..+. ...++|+|+|+.+++.|+++. +++.+..+|
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d 141 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVAS 141 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEee
Confidence 33334444332 34578999999999999999887632 237999999999999997652 467888999
Q ss_pred CCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
....+++.++||+|++... ....+++.++|||||++++..++..
T Consensus 142 ~~~lp~~~~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 142 SHRLPFADQSLDAIIRIYA-PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cccCCCcCCceeEEEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 8776667789999998654 4566899999999999999887664
No 60
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=2.6e-14 Score=110.89 Aligned_cols=101 Identities=29% Similarity=0.344 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||||||.|.++..+++.. +++|+|+.+|+...+.+++.++..+ ..+++++...|..+.. .+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~~~---~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRDLP---GKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccccC---CCCCE
Confidence 6899999999999999999999986 3699999999999999999998744 2357899999876543 38999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+.+ +++.+.++|+|||.+++....
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999877765 458999999999999985543
No 61
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=1.2e-13 Score=105.32 Aligned_cols=112 Identities=28% Similarity=0.420 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. +.++.+|||+|||+|.++..++...++.++++++|+++.+++.++++... ...++.+...|...
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 34445454 67889999999999999999998875567999999999999999887332 13578899988776
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+.+ +++.+.++|+|||.+++..+.
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5555678999999876654 568999999999999987654
No 62
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.57 E-value=6.3e-14 Score=107.92 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred CccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
.++++-++.+. |..+.+.+....-++.+.+++ -.+++|||||||+|+.+-.++...+ ..|+|+|.++...-.+..
T Consensus 80 ~PWRKGPf~l~-gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 80 MPWRKGPFSLF-GIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCcccCCcccC-CEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH
Confidence 44555555543 667777777777777777765 4678999999999999999988753 379999999887655433
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCCCcceEEEE
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTII 167 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 167 (204)
.-.-.+ ....+.++......... .+.||+|++.+++.| .+.++...|++||.+++.+.--.+.......
T Consensus 157 i~~~lg----~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~ 231 (315)
T PF08003_consen 157 IKHFLG----QDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV 231 (315)
T ss_pred HHHHhC----CCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc
Confidence 222111 01223333223233323 578999999999877 4588999999999999988765555555555
Q ss_pred eecCCceEEEeeeeeeeeeeecccchh
Q psy10572 168 DKLADGYTIVTTVVRGVRTNPLYRDRF 194 (204)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~pl~~~~~ 194 (204)
....+ ..+.++.|+|-.....
T Consensus 232 P~~rY------a~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 232 PEDRY------AKMRNVWFIPSVAALK 252 (315)
T ss_pred cCCcc------cCCCceEEeCCHHHHH
Confidence 55433 4555577888755444
No 63
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.5e-14 Score=104.38 Aligned_cols=126 Identities=29% Similarity=0.387 Sum_probs=104.2
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
..+..+-.|.-...++..+. +.|+.+|+|.|+|+|.++.++++..++.++++++|+.+...+.|++|++..+ ..
T Consensus 72 ~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~ 145 (256)
T COG2519 72 KRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LG 145 (256)
T ss_pred cCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cc
Confidence 33444444555666777777 8999999999999999999999988888999999999999999999998854 12
Q ss_pred cceEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 106 GRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++++..+|..+...++ .||.|+.+-+-+| .++.+.+.|+|||.+++-++.-
T Consensus 146 d~v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 146 DRVTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cceEEEecccccccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 34889999988776654 8999999998887 7799999999999998855543
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=2.4e-13 Score=103.01 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+ .++.++.+|+... .+.++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~-~~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARA-VEFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhh-ccCCCeeE
Confidence 5677899999999999999988752 2489999999999999999887633 2578888887653 34568999
Q ss_pred EEECCCccc---------------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++++++.. +++++.++|++||++++.....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999976432 3456789999999999876554
No 65
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=7.5e-14 Score=115.11 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=98.0
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.+..........+. +.++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++..+ ..+
T Consensus 217 G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~ 289 (431)
T PRK14903 217 GLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSS 289 (431)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCe
Confidence 333334444444444444 6788999999999999999999987566799999999999999999998743 456
Q ss_pred eEEEEecCCCCC-CCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHGY-EREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.++.+|..... ...++||.|++++++.. ++..+.+.|||||+++.++++.
T Consensus 290 v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 290 IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 889999876432 22467999999887721 2457789999999999999987
Q ss_pred CCcce
Q psy10572 159 FKGQN 163 (204)
Q Consensus 159 ~~~~~ 163 (204)
..++.
T Consensus 370 ~~eEn 374 (431)
T PRK14903 370 TKEEN 374 (431)
T ss_pred ChhhC
Confidence 75543
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.56 E-value=8.8e-14 Score=106.21 Aligned_cols=112 Identities=25% Similarity=0.351 Sum_probs=87.7
Q ss_pred HHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 38 AQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 38 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
..+.+.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++.+.. +++.++.+|+.
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 33444444221 344699999999999999999987 66789999999999999987643 36788889987
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
....+.++||+|+++..+++ ++..+.++|+|||.+++..+...
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 66656678999999887654 55888999999999999876554
No 67
>KOG2904|consensus
Probab=99.56 E-value=1.5e-13 Score=103.64 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC----CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI----KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~ 90 (204)
+.+|.|-.+.-..|.+++.++....+-..+.... ..+..|||+|||+|..+..+++.+ +.+.++++|.|+.+++.
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHH
Confidence 6788888888888999988887765554444322 234589999999999999999999 68999999999999999
Q ss_pred HHHHhhhcCccccCccceEEEEecCCC----CC-CCCCCeeEEEECCCccc-----------------------------
Q psy10572 91 SIKNIDKGNSELLDQGRVQFVVWNGKH----GY-EREAPYDIIHVSPSYFT----------------------------- 136 (204)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~-~~~~~~D~v~~~~~~~~----------------------------- 136 (204)
|.+|+...+ ....+.+++-+... .. ...+++|++++|+++-.
T Consensus 188 a~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 188 AKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred HHHHHHHHh----hcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 999998754 24567777554332 21 33478999999998721
Q ss_pred ---hhHHHHHhcCCCcEEEEEecC
Q psy10572 137 ---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 137 ---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+...+.+.|+|||.+.+.+..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecc
Confidence 225677999999999998873
No 68
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=1.9e-13 Score=106.75 Aligned_cols=137 Identities=24% Similarity=0.337 Sum_probs=98.0
Q ss_pred CccccccccccCCcccCChHHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGYGADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
..|++..+..+.+..++.+.....+-..+. ....++.+|||+|||+|.++..++... +..+++++|+++.+++.++++
T Consensus 73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 345555555566666655443322222221 113567799999999999999999987 677999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------------------------hhHHHH
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------------------------IPQKLL 142 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~~~ 142 (204)
+... ...++.++.+|+..... .++||+|++|+++.. +++.+.
T Consensus 152 ~~~~-----~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~ 225 (275)
T PRK09328 152 AKHG-----LGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAP 225 (275)
T ss_pred HHhC-----CCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHH
Confidence 8721 23579999999765432 468999999977631 224556
Q ss_pred HhcCCCcEEEEEecCCC
Q psy10572 143 DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~ 159 (204)
++|+|||.+++.+....
T Consensus 226 ~~Lk~gG~l~~e~g~~~ 242 (275)
T PRK09328 226 RYLKPGGWLLLEIGYDQ 242 (275)
T ss_pred HhcccCCEEEEEECchH
Confidence 89999999999876544
No 69
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.55 E-value=2e-13 Score=103.84 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=98.4
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
...+...+..+.-...++..+. +.||.+|||.|+|+|.++..+++..++.++++.+|..+...+.|+++++.++
T Consensus 16 ~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---- 89 (247)
T PF08704_consen 16 SLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---- 89 (247)
T ss_dssp TS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred hccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----
Confidence 3456666767777778888888 9999999999999999999999999899999999999999999999999865
Q ss_pred CccceEEEEecCCCCCCC---CCCeeEEEECCCccc-hhHHHHHhc-CCCcEEEEEecC
Q psy10572 104 DQGRVQFVVWNGKHGYER---EAPYDIIHVSPSYFT-IPQKLLDQL-VPGGRMVMPVGE 157 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~-~~~~~~~~L-k~gG~l~~~~~~ 157 (204)
...++++.+.|....-+. +..+|.|+.+-+.+| .+..+.+.| ++||++.+-.++
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred CCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 245899999998643332 367999999999988 679999999 899999775544
No 70
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.55 E-value=1.3e-13 Score=109.69 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|..+..+++.. +..+++++|.++.+++.|+++... .+++++.+|......+.++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 567899999999999999998876 456999999999999999987532 46788999987666666789999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++..+++ .++++.++|+|||.+++..
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99876654 5588999999999998754
No 71
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.55 E-value=1.8e-13 Score=100.30 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..+. .+++++.+|..... .++||+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~ 85 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDV 85 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccE
Confidence 3456789999999999999999875 3 89999999999999999987643 25788888876543 358999
Q ss_pred EEECCCcc---------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF---------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~---------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.++. .+++.+.++|+|||.+++......
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 99998763 135677799999999999876655
No 72
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.55 E-value=5.3e-14 Score=109.78 Aligned_cols=122 Identities=23% Similarity=0.361 Sum_probs=85.5
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
|....+|-|.+.+. ..+++.+.....++.+|||+|||+|.+++..++... .+|+|+|+++.+++.|+.|+..|+
T Consensus 135 dPg~AFGTG~H~TT----~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~ 208 (295)
T PF06325_consen 135 DPGMAFGTGHHPTT----RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNG 208 (295)
T ss_dssp STTSSS-SSHCHHH----HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT
T ss_pred CCCCcccCCCCHHH----HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcC
Confidence 33345555555433 345555555567889999999999999999999753 489999999999999999999876
Q ss_pred ccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
. ..++.+. . .. .....+||+|++|....- +...+.++|+|||+++++=
T Consensus 209 ~----~~~~~v~--~-~~-~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 209 V----EDRIEVS--L-SE-DLVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp -----TTCEEES--C-TS-CTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred C----CeeEEEE--E-ec-ccccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 2 2345442 1 11 122378999999977654 4467788999999999954
No 73
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=1.7e-14 Score=95.82 Aligned_cols=90 Identities=30% Similarity=0.478 Sum_probs=69.7
Q ss_pred EEEEcCCCcHHHHHHHHHh--CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 54 ILDIGSGSGYLTACLAYMA--GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
|||+|||+|..+..+.+.+ ++..+++++|+|+.+++.++++..... .+++++++|+.......++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 233699999999999999999986632 37899999987755556799999995
Q ss_pred CC-ccc--------hhHHHHHhcCCCc
Q psy10572 132 PS-YFT--------IPQKLLDQLVPGG 149 (204)
Q Consensus 132 ~~-~~~--------~~~~~~~~Lk~gG 149 (204)
.. +++ +++++.++|+|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44 544 4578889999998
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=2.7e-13 Score=106.50 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=81.2
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
++.+.....++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++..+.. ..++.+...+... .
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~ 221 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--P 221 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--c
Confidence 33343334678999999999999998887753 34899999999999999999887541 2345566555222 2
Q ss_pred CCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEecC
Q psy10572 121 REAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..++||+|+++.... .++..+.+.|+|||.++++...
T Consensus 222 ~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 246899999987655 3557888999999999996543
No 75
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=1.5e-13 Score=113.72 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=96.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
...+......+...+. +.++.+|||+|||+|..+..++...++.++++++|+++.+++.+++++...+ ..++.
T Consensus 234 ~~~qd~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~ 306 (434)
T PRK14901 234 WTVQDRSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIK 306 (434)
T ss_pred EEEECHHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEE
Confidence 3333444444445554 5788999999999999999999887556799999999999999999998744 45789
Q ss_pred EEEecCCCCC----CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 110 FVVWNGKHGY----EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 110 ~~~~d~~~~~----~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++.+|..... ...++||.|++++++. .+++.+.+.|||||+++.++++
T Consensus 307 ~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 307 ILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999976543 2246799999987642 2356788999999999988877
Q ss_pred CCCcc
Q psy10572 158 PFKGQ 162 (204)
Q Consensus 158 ~~~~~ 162 (204)
....+
T Consensus 387 i~~~E 391 (434)
T PRK14901 387 LHPAE 391 (434)
T ss_pred CChhh
Confidence 75443
No 76
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.54 E-value=2.4e-13 Score=107.23 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=84.1
Q ss_pred cccCChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 29 ADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
..+.........+..+.++ ..++.+|||+|||+|.++..++... . ..++|+|+|+.++..++....... ...
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~ 171 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLD----NDK 171 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhc----cCC
Confidence 3333344444444444443 3567899999999999998888764 2 379999999999876543222100 124
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++.+...++.+... ..+||+|+++..+++ .++++.++|+|||.|++.+.
T Consensus 172 ~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 172 RAILEPLGIEQLHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CeEEEECCHHHCCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 67777777654433 357999999988765 45899999999999999764
No 77
>PRK04266 fibrillarin; Provisional
Probab=99.54 E-value=2.6e-13 Score=102.59 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|..+..+++..+ .+.|+++|+++.+++.+.++++. ..|+.++.+|..... .-..+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhcccc
Confidence 67889999999999999999999873 66999999999999988776654 247888888875321 11246
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++....+ +++.+.+.|||||.+++++.
T Consensus 142 ~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999998765443 36788999999999999654
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=2.5e-13 Score=108.66 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.+...++.... ++++..|||+|||+|.++..++... ..++|+|+++.++..++.+++..+ ..++.+..
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~ 236 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKR 236 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEe
Confidence 4555666665554 6788999999999999988876643 499999999999999999987744 34578899
Q ss_pred ecCCCCCCCCCCeeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.......++||+|++++++. .+++.+.+.|+|||++++.+++..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 99877655567899999997752 245678899999999999887764
No 79
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.5e-13 Score=112.14 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
.++.........+. +.++.+|||+|||+|..+..+++.. +.+.++++|+++.+++.+++++...+ . +++++
T Consensus 228 iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~ 298 (427)
T PRK10901 228 VQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVI 298 (427)
T ss_pred EECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEE
Confidence 34444444555554 6788999999999999999999987 44799999999999999999998743 2 36788
Q ss_pred EecCCCCC--CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 112 VWNGKHGY--EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 112 ~~d~~~~~--~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.+|..... ...++||.|++++++. .++..+.+.|||||++++++++-...
T Consensus 299 ~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 299 VGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred EcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 88876432 2346799999988753 14567789999999999988765543
No 80
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.8e-13 Score=112.48 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=96.4
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|....+..........+. +.++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++...+ ..+
T Consensus 230 G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~ 302 (445)
T PRK14904 230 GLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITI 302 (445)
T ss_pred cEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCe
Confidence 333333334444444444 5678899999999999999998876455699999999999999999998743 357
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++.+|..... +.++||.|++++++. .++..+.+.|+|||+++.++++-.
T Consensus 303 v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 303 IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999976543 446899999986641 145677899999999999998876
Q ss_pred Ccc
Q psy10572 160 KGQ 162 (204)
Q Consensus 160 ~~~ 162 (204)
..+
T Consensus 382 ~~E 384 (445)
T PRK14904 382 PEE 384 (445)
T ss_pred hhh
Confidence 443
No 81
>KOG1270|consensus
Probab=99.53 E-value=2.5e-14 Score=107.28 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=78.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc----ceEEEEecCCCCCCCCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG----RVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D 126 (204)
+.+|||+|||.|.++..|++... +|+|+|+++.+++.|++....++ .... ++.+.+.+..... +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~~---~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGLT---GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhcc---cccc
Confidence 47899999999999999999763 99999999999999999955533 1122 2555555544332 4599
Q ss_pred EEEECCCccch------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|++...++|+ ++.+.+.|||||++++++-+..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999888875 4788899999999999887665
No 82
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.52 E-value=1.5e-13 Score=104.67 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=88.7
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..++..+.. ..++.+|||+|||+|+.+.+++...++.++++++|+++.+++.|+++++..+ ...+++++.+|+.+
T Consensus 57 g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHH
Confidence 444444442 4567899999999999999999887567899999999999999999998855 13579999999765
Q ss_pred CCC------CCCCeeEEEECCC---ccchhHHHHHhcCCCcEEEEE
Q psy10572 118 GYE------REAPYDIIHVSPS---YFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~------~~~~~D~v~~~~~---~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... +.++||+|+++.. +..+.+.+.+.|+|||.+++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 321 1368999999964 445678899999999998873
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=1e-12 Score=96.82 Aligned_cols=113 Identities=23% Similarity=0.316 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..+.. ...++.++..|...
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~ 84 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFE 84 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccc
Confidence 34445454 4677899999999999999998873 5999999999999999998876431 11128888888766
Q ss_pred CCCCCCCeeEEEECCCccc---------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... ..+||+|+++.++.. +++++.++|+|||.+++.+++..
T Consensus 85 ~~~-~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~ 152 (188)
T PRK14968 85 PFR-GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT 152 (188)
T ss_pred ccc-ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 543 348999999876532 45788899999999988776543
No 84
>KOG1540|consensus
Probab=99.52 E-value=5.5e-13 Score=99.67 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCC-----ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPE-----GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
.++.++||++||+|..+..+.+..... .+|++.|+++.++..++++....+.. ..+.+.++.+|+.+.+++..
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCCCCCC
Confidence 556899999999999999999987432 79999999999999999998653210 12359999999999999999
Q ss_pred CeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+||...+..+... .+++++++|||||++.+-..+..
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 9999988776644 56899999999999987555443
No 85
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.52 E-value=2.5e-12 Score=95.29 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=104.7
Q ss_pred ccccccccc--cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 17 PYRIKSRQI--GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 17 ~y~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|+...+.. +.+...+...+...+...+.. ..++.+|||+|||+|.++..++... ..+++++|.++.+++.++++
T Consensus 19 ~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 19 QWRGRKLPVPDSPGLRPTTDRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred ccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHH
Confidence 355555544 334555566666667666652 2456799999999999998765543 24999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccc-hh----HHHHH--hcCCCcEEEEEecCCCCc----c
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFT-IP----QKLLD--QLVPGGRMVMPVGEPFKG----Q 162 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-~~----~~~~~--~Lk~gG~l~~~~~~~~~~----~ 162 (204)
++.++ ..+++++.+|+..... ...+||+|++++++.. +. +.+.. +|+|++++++.+...... .
T Consensus 96 l~~~~-----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~~ 170 (199)
T PRK10909 96 LATLK-----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPA 170 (199)
T ss_pred HHHhC-----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCCC
Confidence 88754 3478999999764332 2346999999999643 33 33333 368999999998765321 2
Q ss_pred eEEEEeecCCceEEE
Q psy10572 163 NLTIIDKLADGYTIV 177 (204)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (204)
.+..+....++...+
T Consensus 171 ~~~~~~~k~yG~s~~ 185 (199)
T PRK10909 171 NWQLHREKVAGQVAY 185 (199)
T ss_pred ccEEEEEecCCCEEE
Confidence 245556666666544
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.52 E-value=3.3e-13 Score=108.48 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 126 (204)
..+..+||||||+|.++..+++.. |+..++|+|+++.+++.+.+++...+ ..|+.++.+|+... ..+.+++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCcee
Confidence 456699999999999999999998 78899999999999999999887643 56899999997532 35668999
Q ss_pred EEEECCCccc------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFT------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|+++.+.+| +++.+.++|+|||.+.+.+....
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 9999987753 56889999999999999765443
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=3.4e-13 Score=104.71 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-cCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.++.+|+|||||+|.++ +.++....++++++++|.++.+++.|++.+.. .+ ..++++|..+|+.+.....+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcC
Confidence 47789999999987554 44443333788999999999999999999854 22 23579999999877543346899
Q ss_pred EEEECCCcc-------chhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYF-------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~-------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|++..... .+++.+.+.|+|||.+++-..
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999994221 256899999999999999763
No 88
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.51 E-value=4.7e-13 Score=110.54 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=93.6
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc-
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~- 106 (204)
|....++.....+...+. +.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.++++++..+ ..
T Consensus 218 G~~~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~ 289 (426)
T TIGR00563 218 GWVTVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLG-----LTI 289 (426)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcC-----CCe
Confidence 334444445555666665 6788999999999999999999987 46799999999999999999998744 22
Q ss_pred ceEEEEecCCCCCC--CCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 107 RVQFVVWNGKHGYE--REAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 107 ~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+.+..+|...... +.++||.|++++++.. ++..+.+.|||||+++.+++
T Consensus 290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 33446666543222 4568999998865421 44677899999999999988
Q ss_pred CCCCc
Q psy10572 157 EPFKG 161 (204)
Q Consensus 157 ~~~~~ 161 (204)
+-...
T Consensus 370 s~~~~ 374 (426)
T TIGR00563 370 SVLPE 374 (426)
T ss_pred CCChh
Confidence 87543
No 89
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=2.1e-13 Score=103.41 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=80.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
++|||+|||+|..+..+++.. +.++++|+|+|+.+++.+++++...+ ...+++++..|......+ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCCC-CCCCEeehH
Confidence 379999999999999999887 56799999999999999999886633 134789999987654333 589999987
Q ss_pred CCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 132 PSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 132 ~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+++ +++.+.++|+|||.+++...
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 65543 56899999999999998765
No 90
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=4.4e-13 Score=111.34 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=94.7
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.++.....+...+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+ ..+
T Consensus 230 G~~~~qd~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~ 302 (444)
T PRK14902 230 GLITIQDESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTN 302 (444)
T ss_pred ceEEEEChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCe
Confidence 333334444444444554 5778899999999999999999987556799999999999999999988744 356
Q ss_pred eEEEEecCCCCCCC-CCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHGYER-EAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~~~~-~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.++.+|+...... .++||+|++++++. .+++.+.+.|||||.++.++++.
T Consensus 303 v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 303 IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 89999997654211 26799999987742 13567789999999999877765
Q ss_pred C
Q psy10572 159 F 159 (204)
Q Consensus 159 ~ 159 (204)
.
T Consensus 383 ~ 383 (444)
T PRK14902 383 E 383 (444)
T ss_pred C
Confidence 4
No 91
>PRK06922 hypothetical protein; Provisional
Probab=99.51 E-value=4.1e-13 Score=113.38 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
.++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|+++..... .++.++.+|..... ++.++||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEE
Confidence 467899999999999999888877 67899999999999999998765422 36788888876543 4567899
Q ss_pred EEEECCCccc-------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT-------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~-------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++..+++ +++++.++|||||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998865543 34688899999999999753
No 92
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=5.1e-13 Score=104.94 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++..... . ++++...|+..... .++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-cCCccEEE
Confidence 44599999999999999998853 499999999999999998887643 2 67888888655433 46899999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+++ +++.+.++|+|||++++..
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9876543 4578889999999977654
No 93
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.50 E-value=1.4e-12 Score=99.53 Aligned_cols=114 Identities=22% Similarity=0.383 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..++..+. ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++.... ...++.++.+|+..
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~ 114 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence 34444444 4567899999999999999999887335799999999999999999875422 12468899999876
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+++ +++.+.+.|+|||.+++....
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 5555678999998766543 557889999999999886543
No 94
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=1.1e-14 Score=96.41 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=58.8
Q ss_pred EEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEEEECC
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDIIHVSP 132 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~ 132 (204)
||+|||+|.++..+.... +..+++++|+|+.+++.+++++.... ..+......+..+.. ...++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999997 77899999999999998888887633 223333333322221 1225899999998
Q ss_pred Cccch------hHHHHHhcCCCcEE
Q psy10572 133 SYFTI------PQKLLDQLVPGGRM 151 (204)
Q Consensus 133 ~~~~~------~~~~~~~Lk~gG~l 151 (204)
.++++ ++.+.++|+|||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88874 47888999999986
No 95
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.50 E-value=4.2e-13 Score=111.34 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=108.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.++.+.+. .++.....+.+.+... +.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|++++..++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 333444443 3444444444444332 3577899999999999999999875 389999999999999999987744
Q ss_pred ccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccchhH--HHHHhcCCCcEEEEEecCCCCcceEEEEeecCCc
Q psy10572 100 SELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFTIPQ--KLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~--~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 173 (204)
..+++++.+|+.+.. ...++||+|+++++.....+ .....++|+++++++|.+... .+.+......
T Consensus 344 -----~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tl---aRDl~~L~~~ 415 (443)
T PRK13168 344 -----LDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATL---ARDAGVLVEA 415 (443)
T ss_pred -----CCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHh---hccHHHHhhC
Confidence 357999999976432 22357999999998764332 222336899999999866542 2333333334
Q ss_pred eEEEeeeeeeeeeeeccc
Q psy10572 174 YTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 174 ~~~~~~~~~~~~~~pl~~ 191 (204)
.+++ .++.++.+.|.+.
T Consensus 416 gY~l-~~i~~~DmFP~T~ 432 (443)
T PRK13168 416 GYRL-KRAGMLDMFPHTG 432 (443)
T ss_pred CcEE-EEEEEeccCCCCC
Confidence 4677 7778888888764
No 96
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=8.1e-13 Score=101.81 Aligned_cols=104 Identities=25% Similarity=0.336 Sum_probs=77.1
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.....++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.|++++..+.. ...+.+..++
T Consensus 108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~---- 177 (250)
T PRK00517 108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD---- 177 (250)
T ss_pred HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC----
Confidence 3444554445688999999999999998877754 2 3699999999999999999877441 1233333332
Q ss_pred CCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+||+|+++.... .++..+.++|+|||+++++-.
T Consensus 178 ----~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 178 ----LKADVIVANILANPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ----CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2699999987544 355788899999999999754
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=1.9e-12 Score=96.64 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++. +++.+..+|+.. ..+.++||+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEEE
Confidence 5677899999999999999998876 5579999999999999998753 246778888776 556689999
Q ss_pred EEECCCccchh--------HHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTIP--------QKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~~~ 156 (204)
|+++..+.++. +++.+++ ++.+++...
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 99998876542 4445554 345555443
No 98
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.49 E-value=6.1e-13 Score=105.78 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.++.+...+.+.+...+ .++.+|||+|||+|.++..+++.. .+++|+|.++.+++.|+++++.++ ..+++
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~ 224 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQ 224 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceE
Confidence 34445555554433322 356899999999999999999854 499999999999999999998754 35799
Q ss_pred EEEecCCCCCC-CCCCeeEEEECCCccchhH---HHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeeeeee
Q psy10572 110 FVVWNGKHGYE-REAPYDIIHVSPSYFTIPQ---KLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVR 185 (204)
Q Consensus 110 ~~~~d~~~~~~-~~~~~D~v~~~~~~~~~~~---~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (204)
++.+|+.+... ..+.||+|+++++...+.. .+...++|+++++++|.+......+..+ ..+.+ ..+.+..
T Consensus 225 ~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~-~~~~~~D 298 (315)
T PRK03522 225 FQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRI-ERVQLFD 298 (315)
T ss_pred EEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEE-EEEEEec
Confidence 99999764322 2346999999988765433 3445568889999988777655444444 24666 6777777
Q ss_pred eeeccc
Q psy10572 186 TNPLYR 191 (204)
Q Consensus 186 ~~pl~~ 191 (204)
..|.+.
T Consensus 299 mFP~T~ 304 (315)
T PRK03522 299 MFPHTA 304 (315)
T ss_pred cCCCCC
Confidence 777764
No 99
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=8.2e-13 Score=107.37 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++.. .++++...|.... .++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CCCCCE
Confidence 5788999999999999999998875 35999999999999999988742 2477777776543 367999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++...+++ +++.+.++|||||.+++.....
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 998766543 4578889999999999976543
No 100
>KOG1271|consensus
Probab=99.47 E-value=5.8e-13 Score=94.70 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred cccCChHHHHHHHHHHhccCC------CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 29 ADISSPHIHAQMLELLKDKIK------PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
..+........+++++..+.. ...+|||+|||+|.+...|++.. -+...+|+|+|+.+++.|+..++..+
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~--- 115 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG--- 115 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC---
Confidence 344455666677777664432 33499999999999999998876 44579999999999999988877754
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
..+.|+|.+.|+.+.....+.||+|.--..+. -......+.|+|||+++++-++....+......
T Consensus 116 -~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 116 -FSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred -CCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 12349999999887555556788775432221 144778899999999999888877554444433
Q ss_pred e
Q psy10572 169 K 169 (204)
Q Consensus 169 ~ 169 (204)
.
T Consensus 195 ~ 195 (227)
T KOG1271|consen 195 N 195 (227)
T ss_pred c
Confidence 3
No 101
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.47 E-value=7.8e-13 Score=102.51 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=88.6
Q ss_pred ccCCcccCChHHHHHHHHHHhcc------CCCCCEEEEEcCCCcH----HHHHHHHHhC----CCceEEEEEcCHHHHHH
Q psy10572 25 IGYGADISSPHIHAQMLELLKDK------IKPGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAES 90 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~vD~~~~~~~~ 90 (204)
++...+.-.+.....+.+.+.+. ..++.+|||+|||+|. +++.+++... +..+++|+|+|+.+++.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 34444444444444444444321 1345799999999996 5666666542 24689999999999999
Q ss_pred HHHHhhhc----Cc------------------cccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHH
Q psy10572 91 SIKNIDKG----NS------------------ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQK 140 (204)
Q Consensus 91 a~~~~~~~----~~------------------~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~ 140 (204)
|++..-.. .. +.....++.|.+.|+....++.++||+|++...+.+ +++.
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHH
Confidence 99864110 00 000013689999998876665688999999776643 5578
Q ss_pred HHHhcCCCcEEEEEec
Q psy10572 141 LLDQLVPGGRMVMPVG 156 (204)
Q Consensus 141 ~~~~Lk~gG~l~~~~~ 156 (204)
+.+.|+|||++++...
T Consensus 228 l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 228 FAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHhCCCeEEEEECc
Confidence 8899999999998443
No 102
>PRK05785 hypothetical protein; Provisional
Probab=99.47 E-value=1.8e-12 Score=98.32 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+++.+.....++.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|+.. ..++++|+
T Consensus 37 wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~ 101 (226)
T PRK05785 37 WRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSF 101 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEech
Confidence 3344555554333557899999999999999998875 25999999999999999753 12467787
Q ss_pred CCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPG 148 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~g 148 (204)
...++++++||+|++...+++ .++++.++|||.
T Consensus 102 ~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 102 EALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 777777889999999988765 457899999994
No 103
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.47 E-value=2.6e-12 Score=97.10 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+...+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++... ..++.+..+|..+.
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcC
Confidence 3444443 35788999999999999999998873336899999999999999887641 24688899998766
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+.++||+|+++..+++ +++.+.+.|+|||++++.....
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 555678999998766543 5688899999999999866543
No 104
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.46 E-value=5.6e-13 Score=95.64 Aligned_cols=101 Identities=29% Similarity=0.421 Sum_probs=75.5
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
+..+.+...++.+|||+|||.|.++..+.+.. .+++|+|+++.+++. . +......+......
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH------T---------TSEEEEEECHTHHC
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhc
Confidence 34344335788899999999999999996653 399999999999888 1 12222222223334
Q ss_pred CCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++||+|+++..++++ ++.+.++|||||.++++++...
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 45789999999998874 5789999999999999998764
No 105
>PLN02476 O-methyltransferase
Probab=99.46 E-value=1.2e-12 Score=101.14 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..+.++|||+||++|+.+++++...++++.++++|.++...+.|+++++..+ ..++++++
T Consensus 102 v~~~~g~lL~~L~~--~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li 175 (278)
T PLN02476 102 VSPDQAQLLAMLVQ--ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVK 175 (278)
T ss_pred cCHHHHHHHHHHHH--hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEE
Confidence 34444443433333 4567899999999999999999987667899999999999999999998865 23589999
Q ss_pred EecCCCCCC------CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 112 VWNGKHGYE------REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 112 ~~d~~~~~~------~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+.+... ..++||+|++++.-.. .++.+.++|+|||.+++.
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999764321 1358999999987643 567889999999999883
No 106
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=96.99 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+..-..+...+. ..+.++|||||++.|+.+++++..++.+++++++|.+++..+.|+++++..+ ..+++.++.
T Consensus 44 ~~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~ 117 (219)
T COG4122 44 DPETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLL 117 (219)
T ss_pred ChhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEe
Confidence 3555555554444 5788899999999999999999999547899999999999999999998865 134588888
Q ss_pred -ecCCCCCC--CCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEE
Q psy10572 113 -WNGKHGYE--REAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 -~d~~~~~~--~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|..+... ..++||+|++++.-. ..++.+.++|+|||.+++.
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 57664332 358899999997654 4678999999999999983
No 107
>PRK04457 spermidine synthase; Provisional
Probab=99.45 E-value=1.6e-12 Score=100.58 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....|...+.. ..++.+|||||||+|.++..+++.. +.++++++|+++.+++.|++++.... ..++++++.+|+
T Consensus 53 y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da 126 (262)
T PRK04457 53 YTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADG 126 (262)
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCH
Confidence 34444444331 3456799999999999999999987 77899999999999999999876422 136899999997
Q ss_pred CCCCC-CCCCeeEEEECCCc----------cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 116 KHGYE-REAPYDIIHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~-~~~~~D~v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+... ..++||+|+++... ..+++.+.+.|+|||++++.++...
T Consensus 127 ~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 127 AEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 64321 13579999986421 2356889999999999999876554
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.45 E-value=9.1e-13 Score=98.74 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
++++.+|||+|||+|.++..+++..++.+.|+|+|+++- . ..++++++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-------CCCCcEEEecCCCChHHHHHHHHH
Confidence 477889999999999999999998756679999999881 0 1246889999977632
Q ss_pred CCCCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 120 EREAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
...++||+|+++.... .+++.+.++|+|||.+++.++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 3457899999976321 2457888999999999998876653
No 109
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.44 E-value=5.9e-13 Score=96.38 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=80.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAP 124 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 124 (204)
.+.|+.+|||+|||.|.+...+.+. .++..+|+|+++..+..+.++ .+.++++|+.... +++++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence 3679999999999999999988886 457999999999988888654 5778999987543 67789
Q ss_pred eeEEEECCCccchh---HHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||.||++..+..+. .-+...|+-|...+++.++-.
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 99999998886643 345566788989998887764
No 110
>PLN02672 methionine S-methyltransferase
Probab=99.44 E-value=2.5e-12 Score=114.72 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=110.3
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCC---CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
...|+...+....+..++.++....+-. +..... ++.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.|
T Consensus 81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 4466777788888899988877665444 442211 24689999999999999999987 567999999999999999
Q ss_pred HHHhhhcCcc-----------ccCccceEEEEecCCCCCCCC-CCeeEEEECCCccc-----------------------
Q psy10572 92 IKNIDKGNSE-----------LLDQGRVQFVVWNGKHGYERE-APYDIIHVSPSYFT----------------------- 136 (204)
Q Consensus 92 ~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~----------------------- 136 (204)
+.|+..+... .....+++++++|+....... .+||+|++|+++-.
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~ 238 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL 238 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence 9999875311 011247999999987654322 36999999987510
Q ss_pred ---------------------hhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 137 ---------------------IPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 137 ---------------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
++..+.++|+|||.+++.+...+.....
T Consensus 239 ~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 239 SNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 1245667999999999999988766444
No 111
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=2.9e-12 Score=93.85 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.++||+|||.|..+.+|++.. ..|+++|.|+..++.+++...... -.++....|+.....+ +.||+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-T-TTEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhcccc-CCcCE
Confidence 3456799999999999999999975 399999999999999988776533 2488889997765554 67999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+.. +++.+...++|||++++.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 987544432 45778889999999888553
No 112
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.43 E-value=4e-12 Score=100.80 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+ ..++++++.+|+.....+ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccCCCCC--CCCE
Confidence 4677899999999999999999998 7789999997 789999998887643 235799999998754443 3698
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 877665543 45788899999999988643
No 113
>PTZ00146 fibrillarin; Provisional
Probab=99.43 E-value=4.8e-12 Score=98.02 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|.++..++...++.+.|+++|+++.+.+........ .+|+.++..|+.... ....+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChhhhhcccCC
Confidence 58889999999999999999999986677999999998766555444332 247888888875421 12247
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+|+++....+ +..++.+.|||||.|++.+.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 999999876554 33577889999999999543
No 114
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.42 E-value=5.8e-13 Score=99.07 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....++..+.. .....+||||||+.|+.++++++.++++++++.+|.++...+.|+++++..+ ...+++++.+|
T Consensus 31 ~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gd 105 (205)
T PF01596_consen 31 PETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-
T ss_pred HHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEec
Confidence 334444555543 3566799999999999999999988667899999999999999999998754 23689999999
Q ss_pred CCCCC------CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 115 GKHGY------EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 115 ~~~~~------~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+.. .+.++||+|++++.-.. .++.+.++|+|||.+++.
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 76421 11358999999987665 457888999999999983
No 115
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.42 E-value=3.7e-12 Score=92.46 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=80.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++++++|+...
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 4455554 5677899999999999999999873 4999999999999999988753 24799999998876
Q ss_pred CCCCCCeeEEEECCCccc---hhHHHHHh--cCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFT---IPQKLLDQ--LVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~---~~~~~~~~--Lk~gG~l~~~~ 155 (204)
..+...+|.|++|.+++. ++..+... +.++|.+++..
T Consensus 72 ~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 72 DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 655557999999999874 33334332 34677776644
No 116
>PHA03412 putative methyltransferase; Provisional
Probab=99.41 E-value=7.2e-12 Score=94.05 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=83.0
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
..|+++++..+...++.. ...+.+|||+|||+|.++..+++... +..+++++|+++.+++.|+++.
T Consensus 29 ~~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------- 96 (241)
T PHA03412 29 ELGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------- 96 (241)
T ss_pred cCCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------
Confidence 357888888876665422 23467999999999999999988631 2458999999999999999764
Q ss_pred CccceEEEEecCCCCCCCCCCeeEEEECCCccc------------------hhHHHHHhcCCCcEEEE
Q psy10572 104 DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------------~~~~~~~~Lk~gG~l~~ 153 (204)
.++.++.+|+..... .++||+|++|+++.. +++.+.+++++|+. ++
T Consensus 97 --~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 97 --PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred --cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 357888899765433 368999999999852 33566675666664 44
No 117
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=7.1e-12 Score=94.04 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-------cccCccceEEEEecCCCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVVWNGKHGYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~ 121 (204)
.++.+|||+|||.|..+.+++.+. .+|+|+|+|+.+++.+......... +.....+++++.+|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 567899999999999999999864 4999999999999986432111000 000124689999998765432
Q ss_pred -CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 122 -EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 122 -~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.++||.|+-...+.+ .++.+.++|+|||.+++.+.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 357999987766544 45788899999998666554
No 118
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.40 E-value=1.8e-12 Score=105.31 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=108.9
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.++.+.+. .+..+...+...+...+ .++.+|||+|||+|.+++.++... .+++|+|+++.+++.|+.+++.++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~ 279 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG 279 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC
Confidence 334444444 45556666655554332 356799999999999999998753 489999999999999999998754
Q ss_pred ccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccchhHHH---HHhcCCCcEEEEEecCCCCcceEEEEeecCCceE
Q psy10572 100 SELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFTIPQKL---LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~~~~~~---~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 175 (204)
..+++++.+|+..... ...+||+|+++++...+...+ ...++|++++++++........+..+ ..+
T Consensus 280 -----~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy 349 (374)
T TIGR02085 280 -----LDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGY 349 (374)
T ss_pred -----CCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCc
Confidence 3479999999754322 124599999999986543322 34579999999998766533333333 246
Q ss_pred EEeeeeeeeeeeeccc
Q psy10572 176 IVTTVVRGVRTNPLYR 191 (204)
Q Consensus 176 ~~~~~~~~~~~~pl~~ 191 (204)
.+ ..+.+..++|.+.
T Consensus 350 ~l-~~~~~~DmFPqT~ 364 (374)
T TIGR02085 350 QI-ERVQLFDMFPHTS 364 (374)
T ss_pred eE-EEEEEeccCCCCC
Confidence 66 6777777887654
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=5.5e-12 Score=105.79 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=81.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. ..++.+|||+|||+|.++..+++... +++|+|+++.+++.++..... .++++++.+|+..
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGH-------YKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccc
Confidence 34444443 34567999999999999999998753 899999999999887653221 3578999999753
Q ss_pred --CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 118 --GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 --~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..++.++||+|+++.++++ +++++.++|+|||++++..
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred cccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345578999999887654 4467889999999998854
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=94.85 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=87.1
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.|++.+++.+...++ +. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.++++. +
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------P 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------c
Confidence 578887777764442 22 3445799999999999999888875 3469999999999999998763 3
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccch--------------------------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFTI--------------------------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------------------------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++.+|+.... ...+||+|++|+++.+. +.....+|+|+|.+++.+.+.+
T Consensus 110 ~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 110 EAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred CCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 6788999977654 34679999999988541 1333477899998887655443
No 121
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=7.1e-12 Score=98.11 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 127 (204)
..+.+||++|||.|..+..++++. ...+++++|+++.+++.|++.+..........++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456799999999999999998864 34589999999999999999876421111124689999999764322 3468999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++...+ .+.+.+.+.|+|||++++...+.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99975332 23478889999999999865443
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.38 E-value=5.7e-12 Score=102.68 Aligned_cols=106 Identities=21% Similarity=0.249 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 124 (204)
.++.+|||+|||+|.++..++.. ...+++++|.|+.+++.|++++..++ +...+++++.+|+..... ...+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHhcCCC
Confidence 46789999999999998876653 33489999999999999999998865 222478999999765321 2357
Q ss_pred eeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|+++++... +...+.++|+|||.++++.++..
T Consensus 294 fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred CCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 999999988632 23467799999999998666543
No 123
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.38 E-value=8e-12 Score=95.38 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+.....+ ..+.. ..+..+|||||++.|+.+++++...+++++++++|.++...+.|++++...+ ...+++++.+
T Consensus 65 ~~~g~lL-~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFL-NMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREG 138 (247)
T ss_pred HHHHHHH-HHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEec
Confidence 4444333 33332 4566799999999999999999987677899999999999999999998754 2468999999
Q ss_pred cCCCCCCC-------CCCeeEEEECCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 114 NGKHGYER-------EAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 114 d~~~~~~~-------~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
++.+.... .++||+|++++.-.. ..+.+.++|+|||.+++
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 97643211 268999999987544 45788899999999987
No 124
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.36 E-value=2.2e-11 Score=96.30 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
+.....+.+...+.++.+|||+|||+|..+..+++.+....+++++|+|+.+++.+++++.... ..-++.++++|+
T Consensus 49 il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~ 124 (301)
T TIGR03438 49 ILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADF 124 (301)
T ss_pred HHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcc
Confidence 3444445454445677899999999999999999987324689999999999999998876521 112467788997
Q ss_pred CCCC-CCCC----CeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 116 KHGY-EREA----PYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 116 ~~~~-~~~~----~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.... .... ...+++++..+.. +++++.+.|+|||.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 125 TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 6532 1111 2334444433332 46788999999999998553
No 125
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.35 E-value=7.3e-12 Score=92.73 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~ 125 (204)
.....+||||||.|.+...++... |+..++|+|+....+..+..++... +.+|+.++++|+... .++++++
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEEEEES-CTTHHHHHSTTTSE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceEEEEccHHHHHhhcccCCch
Confidence 344489999999999999999998 8899999999999999998888774 368999999997752 3456899
Q ss_pred eEEEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.|+++.+.++ +++.+.+.|+|||.|.+.+-..
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 99999988765 5578899999999998877544
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=1.2e-11 Score=91.42 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
+.++.+|||+|||+|.++..+++...+.++++++|+++.+ . .+++.++.+|..+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 5788999999999999999998876455689999999854 1 135778888865421
Q ss_pred CCCCCeeEEEECCCc-----------------cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 120 EREAPYDIIHVSPSY-----------------FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~-----------------~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+.++||+|+++... ...++.+.+.|+|||.+++.+...
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 234679999987531 124577889999999999976543
No 127
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.35 E-value=2.8e-11 Score=91.46 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.....++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++.... ...++.+..+|+...
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLSL 116 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhhC
Confidence 3444443213467899999999999999998753 389999999999999999886532 124789999997654
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ++||+|++...+.+ .+..+.+.+++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3 67999998766543 23566677776555443
No 128
>PRK06202 hypothetical protein; Provisional
Probab=99.33 E-value=4.3e-11 Score=91.28 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.|+++... .++.+...+......+.++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 466799999999999998887653 2346999999999999999887543 24555555443333345789
Q ss_pred eEEEECCCccchh--------HHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIP--------QKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~ 154 (204)
|+|+++..++++. +++.++++ |.+++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9999998887643 46667776 444443
No 129
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.32 E-value=6.3e-12 Score=104.14 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 33 SPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
++.....+.+.+... +.++.+|||+|||+|.++..+++... +++|+|+++.+++.|++++..++ ..++++
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~ 344 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNG-----IANVEF 344 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhC-----CCceEE
Confidence 444444455444433 35668999999999999999998753 89999999999999999998754 458999
Q ss_pred EEecCCCCC----CCCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeee
Q psy10572 111 VVWNGKHGY----EREAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 182 (204)
Q Consensus 111 ~~~d~~~~~----~~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (204)
+.+|+.+.. ....+||+|+++++... +++. ...++|++++++++........+..+. ...+.. ..+.
T Consensus 345 ~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~-l~~l~~~~ivyvsc~p~tlard~~~l~---~~gy~~-~~~~ 419 (431)
T TIGR00479 345 LAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRT-IIELKPERIVYVSCNPATLARDLEFLC---KEGYGI-TWVQ 419 (431)
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHH-HHhcCCCEEEEEcCCHHHHHHHHHHHH---HCCeeE-EEEE
Confidence 999975421 22356999999988654 2333 335889998888775433222222222 233556 6667
Q ss_pred eeeeeeccc
Q psy10572 183 GVRTNPLYR 191 (204)
Q Consensus 183 ~~~~~pl~~ 191 (204)
.+...|.+.
T Consensus 420 ~~DmFP~T~ 428 (431)
T TIGR00479 420 PVDMFPHTA 428 (431)
T ss_pred EeccCCCCC
Confidence 777777653
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=1.4e-11 Score=107.37 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 127 (204)
.++.+|||+|||+|.++..+++.. ..+|+++|.|+.+++.|++++..++ +...+++++++|..+... ...+||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHcCCCcCE
Confidence 357899999999999999999853 2379999999999999999998865 222479999999764321 1367999
Q ss_pred EEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++++.. .+...+.++|+|||.+++++....
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99998852 144677889999999998776554
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.31 E-value=4.8e-11 Score=91.05 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
..++.+|||+|||+|.++..+++.. ++++++|+++.+++.++.++.... .++.+...+..+.. ...++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence 4567899999999999998888753 489999999999999998876532 24667777655432 2346899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++...+.+ +++.+.+.|+|||.+++..+.
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9998765543 557889999999999988764
No 132
>KOG4300|consensus
Probab=99.31 E-value=1.7e-11 Score=89.08 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE-EEEecCCCCC-CCCCCeeE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~ 127 (204)
....|||+|||+|.--.+.--. +.++|+++|+++.|-+.+.+.++... ..++. |+.++..... .+++++|.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeee
Confidence 3346799999999875444322 56799999999999999999987743 34666 8888877655 56789999
Q ss_pred EEECCCcc------chhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYF------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++..++- ..+++..++|||||++++..
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 98876552 26689999999999999843
No 133
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.30 E-value=9.7e-12 Score=100.57 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred Cccc-CChHHHHHHHHHHhccCCC-CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 28 GADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 28 ~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
+.+. .+......+.+.+...+.. +.++||++||+|.++..+++... +++++|.++.+++.+++++..++ .
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~-----~ 253 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANG-----I 253 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhC-----C
Confidence 3444 4555666676666654432 35799999999999998888753 89999999999999999988754 3
Q ss_pred cceEEEEecCCCCC---CC-------------CCCeeEEEECCCccchhHHHH-HhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 106 GRVQFVVWNGKHGY---ER-------------EAPYDIIHVSPSYFTIPQKLL-DQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 106 ~~~~~~~~d~~~~~---~~-------------~~~~D~v~~~~~~~~~~~~~~-~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
.+++++.+|+.... .. ..+||+|+++++...+...+. .+.+++++++++|........+..+.
T Consensus 254 ~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~ 333 (362)
T PRK05031 254 DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS 333 (362)
T ss_pred CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc
Confidence 58999999975321 10 125899999999876655554 33467899999887754333233332
Q ss_pred ecCCceEEEeeeeeeeeeeeccc
Q psy10572 169 KLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
+ .+++ ..+..+..+|.+.
T Consensus 334 ~----gY~l-~~v~~~DmFPqT~ 351 (362)
T PRK05031 334 Q----THKV-ERFALFDQFPYTH 351 (362)
T ss_pred C----CcEE-EEEEEcccCCCCC
Confidence 1 3666 6777777777764
No 134
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.30 E-value=3.4e-11 Score=90.68 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=87.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCCCeeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v 128 (204)
..+||||||.|.+...+|+.. |+..++|||+....+..+...+...+ .+|+.+++.|+.. ...++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999998 88899999999999999998887743 4599999999763 34566699999
Q ss_pred EECCCccc--------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++.+.+| +++.+.+.|+|||.|.+.+-...
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 99988865 56899999999999999775443
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=9.1e-11 Score=88.38 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC-------ccccCccceEEEEecCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-------SELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~ 120 (204)
+.++.+|||+|||.|..+.+++.+. .+|+|+|+|+.+++.+........ .+.....++++.++|+.+...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567899999999999999999854 499999999999998643211100 000013578999999876543
Q ss_pred C-CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 121 R-EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 121 ~-~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ...||.|+-...+.+ ..+.+.++|+|||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 257999987665544 35788899999997554
No 136
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.28 E-value=1e-10 Score=97.01 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=95.9
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..+.+..........+...+.++.+|||+|||+|.-+..++...+..+.++++|+++..++..++++...+ ..++
T Consensus 92 ~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv 166 (470)
T PRK11933 92 LFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNV 166 (470)
T ss_pred cEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeE
Confidence 33334444444444452125788999999999999999999988666799999999999999999998843 5678
Q ss_pred EEEEecCCCCC-CCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 109 QFVVWNGKHGY-EREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 109 ~~~~~d~~~~~-~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+...|..... ...+.||.|++++++.. ++..+.+.|||||+|+.++++-.
T Consensus 167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 88888865321 11256999999988742 34677799999999999998855
Q ss_pred C
Q psy10572 160 K 160 (204)
Q Consensus 160 ~ 160 (204)
.
T Consensus 247 ~ 247 (470)
T PRK11933 247 R 247 (470)
T ss_pred H
Confidence 3
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=5.6e-11 Score=90.05 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v 128 (204)
++.+|||+|||+|.++..+++.. ..++++|+++.+++.++.++.... ..++.+...|..+.... .++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEE
Confidence 47799999999999999888754 379999999999999998876532 22578888876544322 3689999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++..+++ +++.+.+.|+|||.+++..++.
T Consensus 117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 98765543 5688889999999999877543
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.27 E-value=8.4e-11 Score=93.58 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCC-CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGY-EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 125 (204)
....+||++|||.|..+..+++.. +..+++++|+++.+++.|+... ..........++++++.+|+.... ...+.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 445699999999999988888864 4569999999999999999631 110000123578999999987532 224679
Q ss_pred eEEEECCCcc-----------chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHVSPSYF-----------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~~~~~~-----------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+|+++.+.+ .+.+.+.+.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999986432 145788999999999987644
No 139
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=9.8e-11 Score=76.99 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=75.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEEC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVS 131 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 131 (204)
+|+|+|||+|..+..+++ . ...+++++|.++..++.+++..... ...++.++..|..+... ...++|+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence 489999999999988888 3 4569999999999999888533321 23578889988776543 45689999999
Q ss_pred CCccc-------hhHHHHHhcCCCcEEEEE
Q psy10572 132 PSYFT-------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 132 ~~~~~-------~~~~~~~~Lk~gG~l~~~ 154 (204)
.++.. +++.+.+.|+++|.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 88754 457888999999999886
No 140
>PLN02366 spermidine synthase
Probab=99.27 E-value=1e-10 Score=92.31 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
..+.+||+||||.|..+..++++. +..+++.+|+++.+++.+++.+..... ....++++++.+|+.... .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 556799999999999999998873 345899999999999999998754210 123568999999975332 2246799
Q ss_pred EEEECCCcc----------chhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++...+ .+.+.+.+.|+|||+++....
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 999986542 245788999999999987443
No 141
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.27 E-value=4.8e-11 Score=88.54 Aligned_cols=97 Identities=24% Similarity=0.328 Sum_probs=71.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAP 124 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 124 (204)
.++++.+|||+|||+|.++..+++.. ...++|+|+++.+++.++.. +++++.+|+... ..++++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCC
Confidence 35677899999999999998887653 34789999999999888542 467778886542 234578
Q ss_pred eeEEEECCCccchh---HHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
||+|+++..++++. ..+...+++++.+++++++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999998876642 3444556667777776554
No 142
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=8e-10 Score=81.53 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
..+...+...+...+.. .-++.++||++||+|.++..++.+.. ..++++|.++.+++.++++++.+.. ..+++
T Consensus 30 rpt~~~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~ 102 (189)
T TIGR00095 30 RPTTRVVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAE 102 (189)
T ss_pred CCchHHHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEE
Confidence 33444455555555542 24578999999999999999999752 3899999999999999999987541 23688
Q ss_pred EEEecCCCCC---CC-CCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCCCc----ceEEEEeecCCce
Q psy10572 110 FVVWNGKHGY---ER-EAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPFKG----QNLTIIDKLADGY 174 (204)
Q Consensus 110 ~~~~d~~~~~---~~-~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~~~----~~~~~~~~~~~~~ 174 (204)
++.+|..... .. ...+|+|+.++++.. +++.+. .+|+++|.+++........ ..+..+....+|.
T Consensus 103 ~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~~~~~~~~~~~~~~~r~yG~ 182 (189)
T TIGR00095 103 VVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDREPELPPVEAWLSLKRQKKGGV 182 (189)
T ss_pred EEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecCCCCCCCCcCCeEEEEEeecCc
Confidence 9999974321 11 224899999998854 222332 4689999999987654321 1244455555554
Q ss_pred EE
Q psy10572 175 TI 176 (204)
Q Consensus 175 ~~ 176 (204)
..
T Consensus 183 t~ 184 (189)
T TIGR00095 183 SY 184 (189)
T ss_pred EE
Confidence 43
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.26 E-value=6e-11 Score=92.42 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v 128 (204)
.+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+.... .....++++++.+|..... ...++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEE
Confidence 34599999999999998888765 34589999999999999999875421 0122457888888865422 113689999
Q ss_pred EECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++...+ .+.+.+.+.|+|||++++...+.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9976522 24478889999999999875443
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.26 E-value=2.7e-11 Score=97.64 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHhccCC-CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 32 SSPHIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
.+......+++.+...+. .+.+|||++||+|.++..+++... +++|+|.++.+++.|++++..++ ..++++
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~ 249 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQI 249 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEE
Confidence 445555666665554443 234799999999999999988763 89999999999999999998754 357999
Q ss_pred EEecCCCCCCC----------------CCCeeEEEECCCccchhHHH-HHhcCCCcEEEEEecCCCCcceEEEEeecCCc
Q psy10572 111 VVWNGKHGYER----------------EAPYDIIHVSPSYFTIPQKL-LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173 (204)
Q Consensus 111 ~~~d~~~~~~~----------------~~~~D~v~~~~~~~~~~~~~-~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 173 (204)
+.+|....... ...||+|+++++-..+...+ ..+.+|+++++++|.+......+..+. .+
T Consensus 250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~ 326 (353)
T TIGR02143 250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET 326 (353)
T ss_pred EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC
Confidence 99997542210 12389999999976655444 344578999999887665333333332 12
Q ss_pred eEEEeeeeeeeeeeeccc
Q psy10572 174 YTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 174 ~~~~~~~~~~~~~~pl~~ 191 (204)
+++ ..+..+...|.+.
T Consensus 327 -Y~l-~~v~~~DmFP~T~ 342 (353)
T TIGR02143 327 -HRV-ERFALFDQFPYTH 342 (353)
T ss_pred -cEE-EEEEEcccCCCCC
Confidence 555 6667777777654
No 145
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.25 E-value=8.7e-11 Score=91.60 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=79.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++.. ++++
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~ 90 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLT 90 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceE
Confidence 4567777778888776 6788899999999999999999986 3 899999999999999886532 4799
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+.....+.-.++.|++|.++.-...-+.+.|
T Consensus 91 ~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 91 IIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred EEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 999998765443222589999998865333333444
No 146
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.25 E-value=2.1e-10 Score=88.85 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=77.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++
T Consensus 11 fl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~ 78 (258)
T PRK14896 11 FLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVE 78 (258)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEE
Confidence 4467888888888776 6788999999999999999999974 3899999999999999988753 25899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
++++|+.....+ .+|.|++|.++..
T Consensus 79 ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 79 IIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred EEEeccccCCch--hceEEEEcCCccc
Confidence 999998775443 4899999998864
No 147
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=2.8e-10 Score=90.03 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.....+++.+... ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++............++.+...
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3445555555421 1256799999999999999999853 49999999999999999987652100001235778888
Q ss_pred cCCCCCCCCCCeeEEEECCCccchh
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYFTIP 138 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~~~~ 138 (204)
|+... .++||+|++...+.++.
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecC
Confidence 85432 36799999988776543
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.3e-10 Score=82.34 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=76.9
Q ss_pred cCCcccCChHHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 26 GYGADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
+..+..+...+.+.++.... .-.-.+..|+|+|||+|.+++.++.... ..|+++|+++.+++.+++|+...
T Consensus 20 ~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l------ 91 (198)
T COG2263 20 GLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEEL------ 91 (198)
T ss_pred cceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhh------
Confidence 33455666666666666554 1124566899999999999998887652 49999999999999999999872
Q ss_pred ccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
..++.++..|..... .++|.++.|+++-
T Consensus 92 ~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 92 LGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCceEEEEcchhhcC---CccceEEECCCCc
Confidence 468999999977654 5699999999984
No 149
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.23 E-value=1.7e-10 Score=84.53 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=98.2
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.....+...+.+.+...+....-++.++||+.||+|.++.+.+.+.. .+|+.||.++..+...++|++..+ ...
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~----~~~ 92 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG----LED 92 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GG
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC----CCc
Confidence 45566777788888888874324688999999999999999988753 499999999999999999998743 123
Q ss_pred ceEEEEecCCCCC----CCCCCeeEEEECCCccch------hHHHH--HhcCCCcEEEEEecCCCCc----ceEEEEeec
Q psy10572 107 RVQFVVWNGKHGY----EREAPYDIIHVSPSYFTI------PQKLL--DQLVPGGRMVMPVGEPFKG----QNLTIIDKL 170 (204)
Q Consensus 107 ~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~------~~~~~--~~Lk~gG~l~~~~~~~~~~----~~~~~~~~~ 170 (204)
++.++..|..... ....+||+|++++|+..- ++.+. .+|+++|.+++........ ..+..+...
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~~~~~~~~~~~r 172 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDLPESPGNWELIKER 172 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS-SEETTEEEEEEE
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCCccCCCCEEEEEEe
Confidence 5888888854322 134789999999998652 23443 6789999999998766321 235555555
Q ss_pred CCceEEE
Q psy10572 171 ADGYTIV 177 (204)
Q Consensus 171 ~~~~~~~ 177 (204)
.+|...+
T Consensus 173 ~yG~t~~ 179 (183)
T PF03602_consen 173 KYGDTKL 179 (183)
T ss_dssp EETTEEE
T ss_pred cCCCEEE
Confidence 5554433
No 150
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=94.15 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=87.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
+++|||+.|-||.++..++.... .++++||.|...++.|++|++.|+ +....+.++++|+.+.. ....+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCccc
Confidence 99999999999999999988542 399999999999999999999877 34567899999987533 2235899
Q ss_pred EEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 127 IIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 127 ~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
+|++++|... +...+.++|+|||+++++.++....
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 9999988632 5578889999999999988766533
No 151
>KOG1541|consensus
Probab=99.22 E-value=1.7e-10 Score=84.64 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHhccCCC--CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 33 SPHIHAQMLELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
+..+.+..++.+. ++. ..-|||||||+|..+..+.... ..++|+|+|+.|++.|.+.--. -.+
T Consensus 33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gdl 97 (270)
T KOG1541|consen 33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GDL 97 (270)
T ss_pred hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cCe
Confidence 4445666666666 444 5689999999999998887743 4899999999999999863211 235
Q ss_pred EEecCC-CCCCCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 111 VVWNGK-HGYEREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 111 ~~~d~~-~~~~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
+.+|.- ..++..++||-+|+.....+ ++..++.+|++|++.++.+......+
T Consensus 98 il~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 98 ILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 566644 34567799999887655443 23568899999999999887665443
No 152
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.22 E-value=1.6e-10 Score=90.72 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=82.7
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++..|||||||+|.++..+++.. .+++++|+++.+++.+++++...+ ..++++
T Consensus 18 FL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ 88 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLE 88 (294)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEE
Confidence 3467788888888776 7788999999999999999998865 389999999999999999886532 135899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+..... ..||.|++|.++......+.++|
T Consensus 89 ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 89 VIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred EEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 99999876543 36899999999865433333333
No 153
>PRK03612 spermidine synthase; Provisional
Probab=99.22 E-value=1.6e-10 Score=97.63 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCC-CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGY-EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 125 (204)
+++++|||+|||+|..+..+.++. +..+++++|+++.+++.++++. ..........++++++.+|..... ...++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 456799999999999999998753 3359999999999999999843 211100123468999999977532 123689
Q ss_pred eEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|+++.+.+. +.+.+.+.|+|||.+++...+.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99999865432 4578889999999999866433
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.21 E-value=3.2e-10 Score=87.53 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=83.7
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. ..++.+|||+|||+|.++..+++... .++++|+++.+++.++.++.. .++++
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------~~~v~ 78 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------YERLE 78 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------CCcEE
Confidence 4467778888888776 67788999999999999999999863 799999999999999887643 25799
Q ss_pred EEEecCCCCCCCCCCee---EEEECCCccchhHHHHHhc-CCCc
Q psy10572 110 FVVWNGKHGYEREAPYD---IIHVSPSYFTIPQKLLDQL-VPGG 149 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D---~v~~~~~~~~~~~~~~~~L-k~gG 149 (204)
++++|+.....+ .+| .|++|.+++.....+.+++ .++.
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 999998765543 466 8999998876555556666 4443
No 155
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.21 E-value=4.4e-10 Score=85.46 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++....+ ...++.+..+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~---~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDLES---LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCchh---ccCCcCEE
Confidence 467899999999999999998764 379999999999999999886633 11478888888332 24679999
Q ss_pred EECCCccc
Q psy10572 129 HVSPSYFT 136 (204)
Q Consensus 129 ~~~~~~~~ 136 (204)
++...+++
T Consensus 132 ~~~~~l~~ 139 (230)
T PRK07580 132 VCLDVLIH 139 (230)
T ss_pred EEcchhhc
Confidence 99877644
No 156
>KOG2899|consensus
Probab=99.20 E-value=8.9e-11 Score=87.30 Aligned_cols=115 Identities=24% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc----------------
Q psy10572 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ---------------- 105 (204)
Q Consensus 42 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---------------- 105 (204)
..+......+..+|||||.+|.++..+++.++ ...+.|+|+++.+++.|+++++.........
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is 128 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS 128 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc
Confidence 33333345677999999999999999999994 4589999999999999999975421000000
Q ss_pred --------------cceEE-------EEecCCCCCCCCCCeeEEEECCCccc------------hhHHHHHhcCCCcEEE
Q psy10572 106 --------------GRVQF-------VVWNGKHGYEREAPYDIIHVSPSYFT------------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 106 --------------~~~~~-------~~~d~~~~~~~~~~~D~v~~~~~~~~------------~~~~~~~~Lk~gG~l~ 152 (204)
.++.+ ...|+. ......||+|+|.....| ++.++.++|.|||+|+
T Consensus 129 ~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 129 QRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 01111 112222 123356999987654432 5689999999999999
Q ss_pred EEecCCC
Q psy10572 153 MPVGEPF 159 (204)
Q Consensus 153 ~~~~~~~ 159 (204)
+.=-++.
T Consensus 207 vEPQpWk 213 (288)
T KOG2899|consen 207 VEPQPWK 213 (288)
T ss_pred EcCCchH
Confidence 9544443
No 157
>KOG3010|consensus
Probab=99.19 E-value=5.5e-11 Score=88.42 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
...++|+|||+|..++.++.+.. +|+|+|+|+.+++.|++...... ......+...+..+....+++.|+|++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceeeehh
Confidence 34899999999988888898874 89999999999999987643211 111233333333344444689999999
Q ss_pred CCCccch-----hHHHHHhcCCCc-EEEE
Q psy10572 131 SPSYFTI-----PQKLLDQLVPGG-RMVM 153 (204)
Q Consensus 131 ~~~~~~~-----~~~~~~~Lk~gG-~l~~ 153 (204)
....|++ .+.+.++||++| .+.+
T Consensus 107 Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 9888873 478899999888 5544
No 158
>KOG3191|consensus
Probab=99.19 E-value=3.4e-10 Score=80.72 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=87.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
..-++|||||+|..+..+++...+...+.++|++|.+++...+.+..++ .++.+++.|+.....+ ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 6689999999999999999998888899999999999999888887754 4688899998776554 89999999
Q ss_pred CCCccc---------------------------hhHHHHHhcCCCcEEEEEecCCCCc-ceEEEEeec
Q psy10572 131 SPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEPFKG-QNLTIIDKL 170 (204)
Q Consensus 131 ~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~-~~~~~~~~~ 170 (204)
|+++-- ++.++-..|.|.|.+++........ +.+..+++.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKK 184 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhc
Confidence 988721 2234457788999999877544433 334444443
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=7.1e-10 Score=83.47 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-------cCccccC
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-------GNSELLD 104 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~~~~ 104 (204)
.++.+...+.. +. +.++.+||..|||.|..+.+|+... .+|+|+|+|+.+++.+.+.... .......
T Consensus 28 pnp~L~~~~~~-l~--~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSK-LN--INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 44444444333 32 3567899999999999999999965 3899999999999998663110 0000011
Q ss_pred ccceEEEEecCCCCCCC---CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 105 QGRVQFVVWNGKHGYER---EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..++++.++|+.+...+ .+.||.|+-...+.. ..+.+.++|+|||.+++.+..
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 34799999998875421 257999987766644 447888999999999887653
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.16 E-value=7.4e-09 Score=75.10 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=110.8
Q ss_pred CccccccccccC--CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGY--GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 16 ~~y~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
..|....++... +...+...+...+..++.+.--.+.++||+.+|+|.++.+.+.+.. ..++.||.+.......++
T Consensus 7 G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 7 GKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKE 84 (187)
T ss_pred ccccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 345556565444 4556777777777777763114678999999999999999999853 489999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCC---CCCCCCeeEEEECCCccc-hh--H----H--HHHhcCCCcEEEEEecCCC--
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHG---YEREAPYDIIHVSPSYFT-IP--Q----K--LLDQLVPGGRMVMPVGEPF-- 159 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~-~~--~----~--~~~~Lk~gG~l~~~~~~~~-- 159 (204)
|++.-+ ...+.+++..|.... ....++||+|++++++.. +. . . -..+|+|+|.+++......
T Consensus 85 N~~~l~----~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~ 160 (187)
T COG0742 85 NLKALG----LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVEL 160 (187)
T ss_pred HHHHhC----CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcCc
Confidence 987622 135788888886622 222235999999999984 22 1 1 2366999999999887652
Q ss_pred --CcceEEEEeecCCceEEE
Q psy10572 160 --KGQNLTIIDKLADGYTIV 177 (204)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~ 177 (204)
....+..+....+|...+
T Consensus 161 ~~~~~~~~~~r~k~yG~t~l 180 (187)
T COG0742 161 PELPANFELHREKKYGQTKL 180 (187)
T ss_pred cccCCCeEEEEEeecCCEEE
Confidence 234566666666665544
No 161
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=7.9e-10 Score=87.07 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..|.+...++.... +++|..|||--||||.+.+.+.... ++++|.|++..|+.-|+.|+...+ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 45666667766665 8899999999999999999888754 499999999999999999998743 3456566
Q ss_pred Ee-cCCCCCCCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEec
Q psy10572 112 VW-NGKHGYEREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~-d~~~~~~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. |+...++++.++|.|++++++-. .++.+.+.|++||++++..+
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 65 87777677678999999988832 45788899999999999877
No 162
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.13 E-value=6.7e-10 Score=82.19 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=75.8
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC
Q psy10572 45 KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124 (204)
Q Consensus 45 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 124 (204)
.....++..|+|+.||.|.+++.+++.. ....|+++|++|.+++.++++++.++. ..++..+++|...... ...
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~ 169 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGK 169 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccc
Confidence 3346889999999999999999999865 456899999999999999999998762 3568999999876654 678
Q ss_pred eeEEEECCCcc--chhHHHHHhcCCCcEEE
Q psy10572 125 YDIIHVSPSYF--TIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 125 ~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~ 152 (204)
+|.|+++.+.. .++..+..++++||++.
T Consensus 170 ~drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99999998753 57889999999999874
No 163
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2e-09 Score=86.86 Aligned_cols=132 Identities=21% Similarity=0.200 Sum_probs=99.8
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
...|..+.+..........+. +.++.+|||+++++|.-|..++..... ...|+++|.++..++..+.+++. +
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-----l 205 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-----L 205 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-----c
Confidence 334455555555545555555 788999999999999999999998754 34569999999999999999988 4
Q ss_pred CccceEEEEecCCCC---CCCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEE
Q psy10572 104 DQGRVQFVVWNGKHG---YEREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~ 152 (204)
+..++.+...|.... .....+||.|++++++.. +++.+.+.|||||.|+
T Consensus 206 G~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 206 GVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred CCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 466778888775522 222336999999988732 4467889999999999
Q ss_pred EEecCCCCcce
Q psy10572 153 MPVGEPFKGQN 163 (204)
Q Consensus 153 ~~~~~~~~~~~ 163 (204)
.++++-..++.
T Consensus 286 YSTCS~~~eEN 296 (355)
T COG0144 286 YSTCSLTPEEN 296 (355)
T ss_pred EEccCCchhcC
Confidence 99998876644
No 164
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.13 E-value=5.7e-10 Score=88.75 Aligned_cols=128 Identities=22% Similarity=0.280 Sum_probs=88.5
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHh------CCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA------GPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
..|.+.++..+...|+..+. ..++.+|+|.+||+|.+...+.+.. .....++|+|+++.++..++.++...+
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp SCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 34678888899999998886 6778899999999999988887743 145699999999999999988875432
Q ss_pred ccccCccceEEEEecCCCCCCC--CCCeeEEEECCCccc---------------------------hhHHHHHhcCCCcE
Q psy10572 100 SELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFT---------------------------IPQKLLDQLVPGGR 150 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~---------------------------~~~~~~~~Lk~gG~ 150 (204)
....+..+..+|....... ...||+|++|+|+.. ++..+.+.|++||+
T Consensus 102 ---~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 102 ---IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp ---HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ---cccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 1223456788886644322 468999999988732 33678899999999
Q ss_pred EEEEecCC
Q psy10572 151 MVMPVGEP 158 (204)
Q Consensus 151 l~~~~~~~ 158 (204)
+.+.++..
T Consensus 179 ~~~Ilp~~ 186 (311)
T PF02384_consen 179 AAIILPNG 186 (311)
T ss_dssp EEEEEEHH
T ss_pred eeEEecch
Confidence 98888754
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.12 E-value=2.9e-09 Score=77.93 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCce---------EEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR---------VYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
..+.+...|+.... .+++..|||..||+|.+.++.+... .... ++|.|+++.+++.++.|+...+
T Consensus 12 L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--- 85 (179)
T PF01170_consen 12 LRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--- 85 (179)
T ss_dssp S-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc---
Confidence 35556666666555 6788999999999999999988876 3334 8999999999999999998744
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEec
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
....+.+.+.|+.......+++|.|++|+++-. +.+.+.+.|++ ..+++...
T Consensus 86 -~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 86 -VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp --CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred -cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 134688999998876655678999999999843 34677788888 44444333
No 166
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.11 E-value=3.1e-09 Score=74.89 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=100.4
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.+..+| ....+++...+.|+..+. ...+.-|||+|.|+|.++..+.++.-+...++++|.|++......+..
T Consensus 21 ~~PrtVG-aI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---- 93 (194)
T COG3963 21 DNPRTVG-AILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---- 93 (194)
T ss_pred cCCceee-eecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----
Confidence 3344444 334467778888888887 678889999999999999999888656678999999999999888765
Q ss_pred ccccCccceEEEEecCCCCC-----CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 100 SELLDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
+.+.++.+|..... .....||.|++.-++.. +++.+...|..||.++....+..+.-.
T Consensus 94 ------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s~v~ 164 (194)
T COG3963 94 ------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLSPVL 164 (194)
T ss_pred ------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCCccc
Confidence 34668888876432 33456999999877754 558899999999999998887654433
No 167
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.8e-10 Score=94.61 Aligned_cols=140 Identities=22% Similarity=0.256 Sum_probs=104.2
Q ss_pred cccccCCccc-CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 22 SRQIGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 22 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
.+.+..+.++ .++.+...|.+...+.+ .++.++||+-||.|.+++.+++... +|+|+|+++.+++.|+++++.+
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n 338 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAAN 338 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHc
Confidence 3344444444 56667777777666555 4667999999999999999998664 9999999999999999999986
Q ss_pred CccccCccceEEEEecCCCCCC---CCCCeeEEEECCCccchhH---HHHHhcCCCcEEEEEecCCCCcceEEEEee
Q psy10572 99 NSELLDQGRVQFVVWNGKHGYE---REAPYDIIHVSPSYFTIPQ---KLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 169 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~---~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 169 (204)
+ ..|++|+.++...... ....+|.|+.+++-..... +....++|..+++++|.....-..+..+..
T Consensus 339 ~-----i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~ 410 (432)
T COG2265 339 G-----IDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS 410 (432)
T ss_pred C-----CCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 5 5679999998764332 2357999999998766553 444557889999999987764444444444
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.11 E-value=1.1e-09 Score=89.02 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+++...+++.+.. ..++.+|||++||+|..++.++... ....|+++|+++.+++.+++|++.++ ..++.+..
T Consensus 41 nrdl~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~ 113 (382)
T PRK04338 41 NRDISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFN 113 (382)
T ss_pred hhhHHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEh
Confidence 44455555555531 1135699999999999999998876 33489999999999999999998765 34567888
Q ss_pred ecCCCCCCCCCCeeEEEECCCcc--chhHHHHHhcCCCcEEEEE
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYF--TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+.........||+|++++.-. .+++.+...++++|+++++
T Consensus 114 ~Da~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 114 KDANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hhHHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 88754322135699999987532 3557778889999999998
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.10 E-value=1.1e-09 Score=86.71 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCccceEEEEe-c---CCCCC-CCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVVW-N---GKHGY-EREA 123 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-d---~~~~~-~~~~ 123 (204)
++.++||||||+|.+...++... +..+++|+|+++.+++.|+.+++.+ . ...++.+... + +.... .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEEccchhhhhhcccccCC
Confidence 45799999999998888777765 5679999999999999999999886 3 1246777542 2 12211 2346
Q ss_pred CeeEEEECCCccch
Q psy10572 124 PYDIIHVSPSYFTI 137 (204)
Q Consensus 124 ~~D~v~~~~~~~~~ 137 (204)
.||+|++|++++.-
T Consensus 189 ~fDlivcNPPf~~s 202 (321)
T PRK11727 189 RFDATLCNPPFHAS 202 (321)
T ss_pred ceEEEEeCCCCcCc
Confidence 89999999999753
No 170
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.10 E-value=4.7e-10 Score=87.27 Aligned_cols=108 Identities=20% Similarity=0.265 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 125 (204)
..+++|||+.|-+|.++..++... ..+|+.||.|..+++.+++|+..|+ +...+++++..|+.+.+ ...++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCC
Confidence 357899999999999999887743 3489999999999999999999876 33468999999976432 124689
Q ss_pred eEEEECCCcc------------chhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 126 DIIHVSPSYF------------TIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 126 D~v~~~~~~~------------~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|+||+++|.. .+...+.++|+|||.|+++.++....
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 9999998863 25578889999999999888766533
No 171
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.10 E-value=1.2e-09 Score=82.29 Aligned_cols=116 Identities=24% Similarity=0.319 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-cCcc------ccC
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSE------LLD 104 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~------~~~ 104 (204)
.++.+...+-. +. ..++.+||..|||.|....+|+.+. .+|+|+|+|+.+++.+.+.... .... ...
T Consensus 22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 34544444433 43 5777899999999999999999964 4999999999999998433211 0000 012
Q ss_pred ccceEEEEecCCCCCCCC-CCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 105 QGRVQFVVWNGKHGYERE-APYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
..++++.++|+....... ++||+|+-...+.. ..+.+.++|+|||.+++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 357899999988754332 57999988766643 45789999999999444
No 172
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.09 E-value=1.2e-09 Score=87.09 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc----c-CccceEEEEecCCCC-----C
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL----L-DQGRVQFVVWNGKHG-----Y 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~~d~~~~-----~ 119 (204)
++.+|||+|||.|+...-..... -..++|+|++...++.|+.+........ . ..-...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 78899999999988665555542 2499999999999999999983311000 0 011456677776522 1
Q ss_pred CC-CCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 ER-EAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~-~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+ ...||+|-+...+|. ++..+...|+|||+++.++++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22 258999999998876 45788899999999999998875
No 173
>KOG2915|consensus
Probab=99.08 E-value=3.2e-09 Score=80.40 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=97.6
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
.+++..|.-..-.+.++..+. ++|+..|+|-|+|+|.++.++++..+|.++++.+|......+.|.+.++..+ -
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i 155 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----I 155 (314)
T ss_pred ccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----C
Confidence 445555543444556777777 8999999999999999999999999999999999999999999999998865 2
Q ss_pred ccceEEEEecCCCCCCC--CCCeeEEEECCCccchh-HHHHHhcCCCcEEEE
Q psy10572 105 QGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTIP-QKLLDQLVPGGRMVM 153 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~~-~~~~~~Lk~gG~l~~ 153 (204)
.+++++.+-|....-+. +..+|.|+.+.+.+|.. -.+.+.||.+|.-++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEE
Confidence 57899999998754332 46799999999888743 455568888875444
No 174
>KOG3420|consensus
Probab=99.08 E-value=5e-10 Score=76.96 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=84.0
Q ss_pred ccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
++..+..+++++.+.|+..+..-. -.+++++|+|||.|-++...+... ...++|+|+++.+++.+++|.....
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfE--- 95 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFE--- 95 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhh---
Confidence 445677889999999999887543 367899999999999996555532 3489999999999999999987632
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
-++.+.+.|+....+..+.||.++.|+++.
T Consensus 96 ---vqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 96 ---VQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ---hhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 357889999888777778999999999884
No 175
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.05 E-value=8.9e-11 Score=86.67 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
+-|...+.++..+. ..+=.++||+|||+|..+..+-.+.. +.+|+|+|..|++.|.++--- + ++.
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y--------D--~L~ 173 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY--------D--TLY 173 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch--------H--HHH
Confidence 34455555555554 34457999999999999999988774 899999999999999876311 1 112
Q ss_pred EecCC--CCCCCCCCeeEEEECCCcc------chhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 112 VWNGK--HGYEREAPYDIIHVSPSYF------TIPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 112 ~~d~~--~~~~~~~~~D~v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
+++.. .......+||+|....++. .++-.+...|+|||.+.+++-......
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC
Confidence 22222 1112346799998766553 356778899999999999987666554
No 176
>KOG2361|consensus
Probab=99.05 E-value=7e-10 Score=82.58 Aligned_cols=147 Identities=19% Similarity=0.173 Sum_probs=98.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~ 92 (204)
...|+|.-+......+...++....-...+.... +...+|||+|||.|...-.+.+-.+ +.-.+++.|.|+.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 4556777777777777655555444444443211 2223899999999999888888652 2268999999999999998
Q ss_pred HHhhhcCccccCccceEEEEecCC----CCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGK----HGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++..-+. .++.....|+. ....+.+++|+|++...+.. .++.+.++|||||.+++.-++...
T Consensus 115 ~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 115 KSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hccccch------hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 8764422 23443444433 23345688999977665543 558899999999999998877765
Q ss_pred cceEEEE
Q psy10572 161 GQNLTII 167 (204)
Q Consensus 161 ~~~~~~~ 167 (204)
...++..
T Consensus 189 laqlRF~ 195 (264)
T KOG2361|consen 189 LAQLRFK 195 (264)
T ss_pred HHHHhcc
Confidence 5444433
No 177
>PLN02823 spermine synthase
Probab=99.05 E-value=4e-09 Score=84.15 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
....+||.+|+|.|..+..+.+.. +..+++.+|+++.+++.+++.+..+.. ....++++++.+|+.... ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEEEChhHHHHhhCCCCccE
Confidence 345699999999999999988865 445899999999999999998754211 123578999999987543 22367999
Q ss_pred EEECCCcc------------chhH-HHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYF------------TIPQ-KLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~------------~~~~-~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...+ .+.+ .+.+.|+|||++++...+
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 99984321 1345 788999999999876543
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.05 E-value=3.2e-09 Score=77.29 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=70.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----ERE 122 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 122 (204)
...++.+|||+|||+|..++.++... ...+|+..|.++ .++..+.+++.+.. ....++.+...++.... .+.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 35678899999999999999999985 456999999999 99999999987541 12357788888765422 234
Q ss_pred CCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+||+|+.....+. +.+.+.++|+++|.+++.....
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 68999998776643 5678889999999977766543
No 179
>KOG1499|consensus
Probab=99.05 E-value=9.9e-10 Score=86.14 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+-.++.|||+|||+|.+++..++.+. .+|+++|-|. ..+.|++.+..++. ...++++.+.+.+...|.++.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~-ia~~a~~iv~~N~~----~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASS-IADFARKIVKDNGL----EDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechH-HHHHHHHHHHhcCc----cceEEEeecceEEEecCccceeE
Confidence 46788999999999999999999863 5999999665 45999998888652 34699999988766566688999
Q ss_pred EEECCCccchh-----H----HHHHhcCCCcEEE
Q psy10572 128 IHVSPSYFTIP-----Q----KLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~~~~~~~-----~----~~~~~Lk~gG~l~ 152 (204)
|++--.-..++ + .--+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99865443322 2 2227899999884
No 180
>KOG1663|consensus
Probab=99.04 E-value=6.3e-09 Score=77.13 Aligned_cols=121 Identities=19% Similarity=0.309 Sum_probs=93.8
Q ss_pred Cccc-CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~~~-~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
+..+ ..++....+.-.+. +..+++.||+|.=+|+.+..++..++++++++++|+++...+.+.+..+..+ ...
T Consensus 52 ~~~m~v~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~ 125 (237)
T KOG1663|consen 52 GSEMLVGPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDH 125 (237)
T ss_pred ccceecChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccc
Confidence 3344 44555544444444 4567799999999999999999999888999999999999999977776644 245
Q ss_pred ceEEEEecCCCCC------CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 107 RVQFVVWNGKHGY------EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 107 ~~~~~~~d~~~~~------~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
.+++++++..+.. .+.++||.++.++.-.. ..+++.+++|+||.|++.
T Consensus 126 KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 126 KITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 8999999876432 23578999999987544 558999999999999984
No 181
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.04 E-value=3.1e-09 Score=78.20 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHHhccCCCCCE-EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 40 MLELLKDKIKPGAR-ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 40 ~~~~l~~~~~~~~~-vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
+++.+.+.+.+... |||||||+|..+.++++.+ |.....-.|+++......+......+..++.. -+..|+...
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~----P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP----PLALDVSAP 88 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCC----CeEeecCCC
Confidence 44555554555554 9999999999999999999 77888999999999888877776644222221 133443322
Q ss_pred C--------CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 119 Y--------EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 119 ~--------~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ....+||.|++...+|- +++.+.++|++||.|++
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1 12468999998877653 56888899999999977
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.4e-09 Score=80.29 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=83.1
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++....+...+++... +.++..|||||+|.|.+|..+++... .|+++|+++.++...++.... ..+++
T Consensus 12 FL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~ 79 (259)
T COG0030 12 FLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLT 79 (259)
T ss_pred cccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceE
Confidence 3356677788888777 67789999999999999999999874 899999999999999988753 46899
Q ss_pred EEEecCCCCCCCCC-CeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREA-PYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~-~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+....++.- .++.|++|.++.-...-+.++|
T Consensus 80 vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 80 VINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred EEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHH
Confidence 99999987766532 6899999999865333333333
No 183
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.02 E-value=4.8e-09 Score=80.47 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|+|||+|.|.++..+++.. |+.+++.+|. |..++.+++ . ++++++.+|+. ...+. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHH-hhhcc--ccc
Confidence 3556799999999999999999998 8889999997 778888877 1 58999999988 44443 999
Q ss_pred EEECCCccc--------hhHHHHHhcCCC--cEEEEEe
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPG--GRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~g--G~l~~~~ 155 (204)
+++...+++ +++++.+.|+|| |+|++..
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999988876 568899999998 9998844
No 184
>KOG0820|consensus
Probab=99.02 E-value=5e-09 Score=79.37 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=84.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
+....|+++ .++.+.+.+++... ++++..|||+|.|+|.++..+.+... +|+++|.++.++....+++....
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp-- 104 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTP-- 104 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCC--
Confidence 345567777 56777888888777 89999999999999999999999764 99999999999999999987632
Q ss_pred ccCccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
.....+++++|......+ .||.+++|.++.
T Consensus 105 --~~~kLqV~~gD~lK~d~P--~fd~cVsNlPyq 134 (315)
T KOG0820|consen 105 --KSGKLQVLHGDFLKTDLP--RFDGCVSNLPYQ 134 (315)
T ss_pred --ccceeeEEecccccCCCc--ccceeeccCCcc
Confidence 245799999998876654 499999988774
No 185
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.00 E-value=6.7e-10 Score=89.56 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=95.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccCCC-CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 100 (204)
+.++.+.+. .+..+...+.+.+...+.. +..|||+.||.|.+++.++.... +|+|+|.++.+++.|+.++..++
T Consensus 167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~- 242 (352)
T PF05958_consen 167 FRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG- 242 (352)
T ss_dssp EEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC-
Confidence 344445555 5666777777766655432 23899999999999999999774 99999999999999999999865
Q ss_pred cccCccceEEEEecCCCCC----------------CCCCCeeEEEECCCccchhHHHHHhc-CCCcEEEEEecCCCCcce
Q psy10572 101 ELLDQGRVQFVVWNGKHGY----------------EREAPYDIIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 101 ~~~~~~~~~~~~~d~~~~~----------------~~~~~~D~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~~~~~ 163 (204)
..|++++.++..+.. .....+|+|+.++|-..+.+.+.+.+ ++.=+++++|.+......
T Consensus 243 ----i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRD 318 (352)
T PF05958_consen 243 ----IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARD 318 (352)
T ss_dssp ------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHH
T ss_pred ----CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHH
Confidence 478999987643210 11236899999998766544333322 445567776655443333
Q ss_pred EEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 164 LTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
+..+.+ .+.+ ..+.++...|.+.-
T Consensus 319 l~~L~~----~y~~-~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 319 LKILKE----GYKL-EKVQPVDMFPQTHH 342 (352)
T ss_dssp HHHHHC----CEEE-EEEEEE-SSTTSS-
T ss_pred HHHHhh----cCEE-EEEEEeecCCCCCc
Confidence 333322 3566 67777777777643
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.00 E-value=3.8e-09 Score=88.98 Aligned_cols=103 Identities=19% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCCeeE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~ 127 (204)
.+..+||||||.|.+...++... |+..++|+|++...+..+....... +..|+.++..|+. ...++++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~-----~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQ-----NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 45689999999999999999998 8889999999999888887776553 2568888887753 23356688999
Q ss_pred EEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++.+.+| +++.+.+.|+|||.+.+.+-..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 999988866 4578999999999999876543
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.96 E-value=1.3e-08 Score=79.23 Aligned_cols=119 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred HHHHHHHHHhc--cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 36 ~~~~~~~~l~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
....++..+.. +.++ ++||-||.|.|..+..+.++. +-.+++.+|+++..++.+++.+....... ..++++++..
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~ 137 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIID 137 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEec
Confidence 44444444442 2244 599999999999999999997 45699999999999999999986632111 1578999999
Q ss_pred cCCCCCCC-CCCeeEEEECCCcc----------chhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGYER-EAPYDIIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~~~-~~~~D~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|..+.... ..+||+|+++...+ .+.+.+.++|+++|+++....+
T Consensus 138 Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 138 DGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 98754432 23799999986544 2558999999999999998444
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.96 E-value=1.4e-08 Score=77.01 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=81.9
Q ss_pred cCCccc-CChHHHHHHHHHHhccCC---CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 26 GYGADI-SSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
|.|.+. .+......++..-..... ...++||||+|.|..+..++..+. +|++.|.|+.|....+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------- 135 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------- 135 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC-------
Confidence 444333 455555555554321111 356899999999999999999985 899999999997776653
Q ss_pred ccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++..+-.. ....+||+|.|...+.. +++.+++.|+|+|++++.+.-+.
T Consensus 136 -----g~~vl~~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~ 192 (265)
T PF05219_consen 136 -----GFTVLDIDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF 192 (265)
T ss_pred -----CCeEEehhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 34444433211 12357999999877754 67999999999999999775443
No 189
>KOG1975|consensus
Probab=98.94 E-value=4.2e-09 Score=81.58 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC--ccccCccceEEEEecCCCC-----C-
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN--SELLDQGRVQFVVWNGKHG-----Y- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~d~~~~-----~- 119 (204)
.+++..++++|||.|+..+..-+.. -..++|+|+....++.|+++.+.-. .++. .=...|+.+|.... .
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~-~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKF-IFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcc-cceeEEEEeccchhHHHHhcc
Confidence 4788899999999988876665543 2489999999999999999987521 0000 01367888886621 1
Q ss_pred CCCCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+...+||+|-+...+|. .+..+...|+|||.++-++++..
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 22334999998888765 44688899999999999988764
No 190
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.93 E-value=1.6e-08 Score=85.91 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCcccCChHHHHHHHHHHhccCC-----CCCEEEEEcCCCcHHHHHHHHHhCC-------CceEEEEEcCHHHHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIK-----PGARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|++.+++.+...|++.+.+... ...+|||.|||+|.+...++..... ..+++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 47888999999999998863322 3469999999999999888876621 24789999999999999988
Q ss_pred hhhcCccccCccceEEEEecCCCCC-----CCCCCeeEEEECCCcc
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYF 135 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~ 135 (204)
+.... ...+.+...|..... ...+.||+|+.|+|+-
T Consensus 83 l~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 83 LGEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred HhhcC-----CCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence 76532 112444545433211 1125799999998874
No 191
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.90 E-value=8.1e-09 Score=80.86 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.|..+.+..-.......+. ..++..|||+++++|.-+..++......+.+++.|+++..+...+.++... +..
T Consensus 64 ~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-----g~~ 136 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL-----GVF 136 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT-----T-S
T ss_pred CCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc-----CCc
Confidence 3444444444444455555 688899999999999999999998866789999999999999999998873 356
Q ss_pred ceEEEEecCCCC--CCCCCCeeEEEECCCccc----------------------------hhHHHHHhc----CCCcEEE
Q psy10572 107 RVQFVVWNGKHG--YEREAPYDIIHVSPSYFT----------------------------IPQKLLDQL----VPGGRMV 152 (204)
Q Consensus 107 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~L----k~gG~l~ 152 (204)
++.+...|.... ......||.|++++++.. +++.+.+.+ ||||+++
T Consensus 137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 788887775533 122346999999988733 336777899 9999999
Q ss_pred EEecCCCCcce
Q psy10572 153 MPVGEPFKGQN 163 (204)
Q Consensus 153 ~~~~~~~~~~~ 163 (204)
.++++-..++.
T Consensus 217 YsTCS~~~eEN 227 (283)
T PF01189_consen 217 YSTCSLSPEEN 227 (283)
T ss_dssp EEESHHHGGGT
T ss_pred EEeccHHHHHH
Confidence 99987665543
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.90 E-value=3.9e-08 Score=75.69 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
++.+++....-.. +..++||-+|.|.|..+..++++- . +|+.+|+++.+++.+++.+..... ....++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~- 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ- 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-
Confidence 5555555444211 455799999999999999999984 3 999999999999999997654211 134577888762
Q ss_pred CCCCCCCCCCeeEEEECCC-ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPS-YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~-~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..+ ...++||+||++.. .....+.+.+.|+|||+++....+..
T Consensus 132 ~~~--~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 132 LLD--LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred hhh--ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 111 12367999999944 34566899999999999998665554
No 193
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=1.7e-08 Score=80.13 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+|..|+|+-+|.|.+++.+++...+ .|+++|++|.+++.+++|++.|+. ...+..+.+|........+.+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence 467999999999999999999998643 499999999999999999998762 23488999998876555478999
Q ss_pred EEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.+. +.++..+...++++|++.+-.....
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 9999876 5688999999999999988655444
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.86 E-value=8.3e-09 Score=80.72 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
|-+...+++.+. +.++..++|.+||.|..+..+++..++.++|+|+|.++.+++.+++++.. ..++.++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 446677788776 67888999999999999999999985578999999999999999987643 257999999
Q ss_pred cCCCCC--CCC--CCeeEEEECCCc
Q psy10572 114 NGKHGY--ERE--APYDIIHVSPSY 134 (204)
Q Consensus 114 d~~~~~--~~~--~~~D~v~~~~~~ 134 (204)
++.... .+. .++|.|+++.+.
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECCCc
Confidence 976421 111 279999887554
No 195
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.86 E-value=1.4e-08 Score=77.97 Aligned_cols=109 Identities=28% Similarity=0.344 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CC-Cee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EA-PYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~D 126 (204)
+...+||-||.|.|..+..+.++. +..+++.+|+++.+++.+++.+...... ...++++++.+|+...... .+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 457899999999999999998875 3458999999999999999987652211 2357899999997643211 13 799
Q ss_pred EEEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 999875542 255889999999999999764443
No 196
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=2.8e-08 Score=82.30 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+..|+|+|||+|.++...++.. +...+|++||.++.+....+..+..++ -.++|+++++|..+...+ .++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCCCCC-CceeE
Confidence 4689999999999987776653 224599999999998888777655533 136899999998876554 58999
Q ss_pred EEECC----Cc----cchhHHHHHhcCCCcEEE
Q psy10572 128 IHVSP----SY----FTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~----~~----~~~~~~~~~~Lk~gG~l~ 152 (204)
|++-. +. ...+....+.|||+|+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 98732 12 234466668899999874
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.83 E-value=7.8e-09 Score=76.74 Aligned_cols=107 Identities=25% Similarity=0.273 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
.+.+.+|||.|.|-|+.++..+++.. .+|+.+|.++..++.|.-|- .+..+....++++.+|+.+. .+++++|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNP---wSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNP---WSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCC---CCccccccccEEecccHHHHHhcCCcccc
Confidence 46789999999999999999998742 39999999999999987652 11112234689999997643 3567889
Q ss_pred eEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+|+-+++-.. +-.++.+.|+|||+++=-+.++.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 99998887643 33788999999999987776654
No 198
>PRK04148 hypothetical protein; Provisional
Probab=98.82 E-value=2.5e-07 Score=63.75 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
..+.+++|||||+|. ++..+++.. ..|+++|+++..++.++++ .+.++.+|+.....+ -..+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCC
Confidence 345789999999996 777777643 4999999999998888664 367889998765443 36799
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++.-+..++...+.++- +-|.-+++...++.
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 9999988888776666554 45666777665554
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.82 E-value=4.9e-08 Score=71.45 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=79.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSP 132 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 132 (204)
+++|+|+|.|.-++.++-.. |+.+++.+|....-+...+..... ++.+|+++++..+.. .....+||+|++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 89999999999999998887 788999999999988888877766 456789999998776 33457899999987
Q ss_pred Cc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 133 SY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 133 ~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.. ..+...+...+++||.+++.-....
T Consensus 124 v~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 124 VAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp SSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred hcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 65 4577888899999999998665543
No 200
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.81 E-value=1.2e-07 Score=74.08 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=85.7
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhh
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAG---PEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
.++...+.-.+.....+.+.+... ....+|+..||++|- +++.+....+ ...+|+|+|+|+.+++.|++..-
T Consensus 90 tineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 90 TTNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred hCCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 344444454555555555544322 234799999999994 4555555431 14689999999999999988731
Q ss_pred h--------------c-----C-------ccccCccceEEEEecCCCCC-CCCCCeeEEEECCCccc--------hhHHH
Q psy10572 97 K--------------G-----N-------SELLDQGRVQFVVWNGKHGY-EREAPYDIIHVSPSYFT--------IPQKL 141 (204)
Q Consensus 97 ~--------------~-----~-------~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~--------~~~~~ 141 (204)
. . . .+......+.|.+.|+.... +..+.||+|+|...+.+ +++.+
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l 248 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRF 248 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHH
Confidence 1 0 0 00001246788888887643 33578999999766543 55789
Q ss_pred HHhcCCCcEEEEEe
Q psy10572 142 LDQLVPGGRMVMPV 155 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~ 155 (204)
.+.|+|||+|++-.
T Consensus 249 ~~~L~pgG~L~lG~ 262 (287)
T PRK10611 249 VPLLKPDGLLFAGH 262 (287)
T ss_pred HHHhCCCcEEEEeC
Confidence 99999999987744
No 201
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.80 E-value=5.7e-08 Score=78.71 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=79.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 130 (204)
.+|||+.||+|..++.+++......+|+++|+++.+++.+++|++.+. ..++.+++.|....... ...||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999999875222489999999999999999998754 34688888887643321 256999999
Q ss_pred CCCcc--chhHHHHHhcCCCcEEEEEe
Q psy10572 131 SPSYF--TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 131 ~~~~~--~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++.-. .+++.+.+.++++|.+.++.
T Consensus 121 DPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 88432 47788999999999999974
No 202
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=5.6e-08 Score=71.93 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHHh----CCCceEEEEEcCHHHHHHHHHHhhh--------------c-----C-cc
Q psy10572 50 PGARILDIGSGSGY----LTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDK--------------G-----N-SE 101 (204)
Q Consensus 50 ~~~~vLdiG~G~G~----~~~~l~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~--------------~-----~-~~ 101 (204)
+..+|+..||++|. +++.+.... +...+++|+|+|+.+++.|++..=. . + .-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999995 455555522 1246999999999999999876410 0 0 00
Q ss_pred cc---CccceEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 102 LL---DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 102 ~~---~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+ ...++.|.+.|+.+.....+.||+|+|..++-. +++.+.+.|+|||.|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 00 124789999998884455688999999988744 56788899999999999443
No 203
>KOG1500|consensus
Probab=98.79 E-value=4.7e-08 Score=76.36 Aligned_cols=99 Identities=25% Similarity=0.296 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-.++.|||+|||+|.++...+.... .+|+++|. ..|.+.|++.++.+. ...++.++.+.+.+...+ ++.|++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEA-S~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEA-SEMAQYARKLVASNN----LADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEeh-hHHHHHHHHHHhcCC----ccceEEEccCccccccCc-hhccEE
Confidence 4678999999999999999988753 49999995 568999999887753 357899999998776655 679999
Q ss_pred EECCCccchh--------HHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFTIP--------QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~~~--------~~~~~~Lk~gG~l~~~~ 155 (204)
|+-+.-.-+. -.+.+.|+|+|..+=++
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 9876543322 24558999999886544
No 204
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.77 E-value=5.3e-08 Score=70.02 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=61.3
Q ss_pred EEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEE
Q psy10572 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 79 ~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~ 152 (204)
+|+|+|+.|++.|+++...... ....+++++.+|+...+.+.++||+|++...+++ .++++.++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877643110 0124799999998887777789999999887765 4579999999999999
Q ss_pred EEecCC
Q psy10572 153 MPVGEP 158 (204)
Q Consensus 153 ~~~~~~ 158 (204)
+..++.
T Consensus 79 i~d~~~ 84 (160)
T PLN02232 79 ILDFNK 84 (160)
T ss_pred EEECCC
Confidence 876654
No 205
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.73 E-value=2.3e-08 Score=71.34 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=55.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCC-eeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAP-YDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D~v 128 (204)
..|+|+.||.|.-++.+++.+. +|+++|+++..++.|+.|+.-.+ ..+++.++++|+.+... .... +|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEE
Confidence 3699999999999999999874 89999999999999999998754 24689999999875431 1122 8999
Q ss_pred EECCCc
Q psy10572 129 HVSPSY 134 (204)
Q Consensus 129 ~~~~~~ 134 (204)
+++++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998776
No 206
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.69 E-value=2.1e-07 Score=72.23 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=78.0
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++.++.+...+++.+. +.++..|||+|+|.|.+|..+++... +++++|.++.+.+..++.+.. .++++
T Consensus 12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~-------~~~~~ 79 (262)
T PF00398_consen 12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS-------NPNVE 79 (262)
T ss_dssp EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------cccce
Confidence 4567888889999887 67899999999999999999999873 999999999999999987753 36899
Q ss_pred EEEecCCCCCCCC---CCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYERE---APYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~---~~~D~v~~~~~~~~ 136 (204)
++.+|+....... .....|++|.++.-
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETGTG
T ss_pred eeecchhccccHHhhcCCceEEEEEecccc
Confidence 9999988654432 45778888888743
No 207
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=1.6e-07 Score=71.01 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH-HHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++..+||+|||+|.++..+++.. ..+++++|+++.++.. .+.+.+.. .....|++. .+..+....-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~~--~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIRY--VTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCee---EeecCCccc--CCHhHcCCCceeeeE
Confidence 366799999999999999999873 3489999999987765 32221100 001123321 111111112235776
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++.... ++..+..+|++ |.+++-+
T Consensus 147 sfiS~~~--~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 147 SFISLIS--ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EEeehHh--HHHHHHHHhCc-CeEEEEc
Confidence 6655443 67899999999 7776644
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=8.8e-07 Score=65.34 Aligned_cols=99 Identities=22% Similarity=0.220 Sum_probs=75.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
.+.++..|+|+|+.+|.++..+++..++.+.|+|+|+.|-- ..+++.++++|+....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHH
Confidence 35889999999999999999999998776789999987731 1356999999987432
Q ss_pred -CCCCCeeEEEECCCc--------cc---------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 120 -EREAPYDIIHVSPSY--------FT---------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~--------~~---------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
....++|+|+++..- ++ .++-+...|+|||.+++.+..+...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 334568999987543 12 2256668999999999988777644
No 209
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.61 E-value=1.6e-07 Score=69.62 Aligned_cols=99 Identities=24% Similarity=0.222 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCcHHHHHH-HHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGSGYLTACL-AYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l-~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
..+.||.|+|-|+.+..+ .+.+. +|-.+|+.+..++.|++.+.... ....++.+..+.+..++..+||+|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~---~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFD---EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-S---EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEE
T ss_pred cceEEecccccchhHHHHHHHhcC---EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEE
Confidence 468999999999999866 44443 89999999999999998765411 1234555555454444457999999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+.-.+.+ +++++...|+|+|.+++-..-
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 9877655 457899999999999995543
No 210
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.59 E-value=2.2e-07 Score=68.31 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+.. .++...|-|+|||.+.++..+.. ...|+..|+.+. +-.++..|+..
T Consensus 61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------------n~~Vtacdia~ 115 (219)
T PF05148_consen 61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------------NPRVTACDIAN 115 (219)
T ss_dssp HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------------STTEEES-TTS
T ss_pred HHHHHHHHh-cCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------------CCCEEEecCcc
Confidence 345566652 34457999999999999855432 237999997542 33467788887
Q ss_pred CCCCCCCeeEEEECCCc-----cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSPSY-----FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+.+.++.|++++...+ ...+.++.|+||+||.|++.....
T Consensus 116 vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp -S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 77888999999876544 447799999999999999865443
No 211
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.59 E-value=9.4e-07 Score=68.30 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred CcccCChHHHHHHHHHHhcc----CC-CCCEEEEEcCCCcH----HHHHHHHHhC----CCceEEEEEcCHHHHHHHHHH
Q psy10572 28 GADISSPHIHAQMLELLKDK----IK-PGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~----~~-~~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~vD~~~~~~~~a~~~ 94 (204)
..+.-.++....+.+.+.+. .+ ...+|+..||++|- +++.+.+..+ ...+|+|+|+|..+++.|+.-
T Consensus 69 T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 69 TEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred chhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 33444444444444444432 12 35799999999994 6666666663 257999999999999999865
Q ss_pred hhh--cC---cc-------------------ccCccceEEEEecCCCCCCCCCCeeEEEECCCcc--------chhHHHH
Q psy10572 95 IDK--GN---SE-------------------LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF--------TIPQKLL 142 (204)
Q Consensus 95 ~~~--~~---~~-------------------~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------~~~~~~~ 142 (204)
.-. .. .. ......|.|...|+....+..+.||+|+|-.++- .++..+.
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 411 00 00 0012357777788776553457799999988763 3668889
Q ss_pred HhcCCCcEEEEEe
Q psy10572 143 DQLVPGGRMVMPV 155 (204)
Q Consensus 143 ~~Lk~gG~l~~~~ 155 (204)
..|+|||.|++-.
T Consensus 229 ~~L~~gG~LflG~ 241 (268)
T COG1352 229 DSLKPGGLLFLGH 241 (268)
T ss_pred HHhCCCCEEEEcc
Confidence 9999999999843
No 212
>KOG1122|consensus
Probab=98.58 E-value=7.5e-07 Score=71.60 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
++++.+|||+++.+|.-+.+++......+.+++.|.+...++..+.++.. ++..+..+...|..+. .++. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCcccccccccCc-c
Confidence 58899999999999999999988887778999999999999999999877 3466777888886532 2333 8
Q ss_pred eeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 125 YDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 125 ~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
||.|..++++.. ++..+...+++||+|+.++++-..+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE 377 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh
Confidence 999999988743 3356778899999999998877644
No 213
>KOG2940|consensus
Probab=98.56 E-value=6.6e-08 Score=71.76 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
+.-..++||||+-|.+...+.... -.+++-+|.|-.|++.++..- ++ .-.+....+|-....+.++++|+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp------~i~~~~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DP------SIETSYFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CC------ceEEEEEecchhcccccccchhhh
Confidence 455689999999999999887764 248999999999999997542 11 113445567766666888999999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
++...++| ...++...|||+|.++.+...++...++
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 99988876 3468889999999999999888766553
No 214
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.56 E-value=2.3e-06 Score=68.64 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC---C----------------------------Cc-------eEEEEEcCHHHHH
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG---P----------------------------EG-------RVYGVEHVMELAE 89 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~vD~~~~~~~ 89 (204)
..++..++|--||+|.+.+..+.... | .+ .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 46678999999999999998887652 1 11 3779999999999
Q ss_pred HHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEe
Q psy10572 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.|+.|+...+ ..+.|+|.++|+.....+.+.+|+||+|+++-. +.+.+.+.++..+..+++.
T Consensus 269 ~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 269 GAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999998755 246799999997755433368999999999843 2246668888888888876
Q ss_pred cCCC
Q psy10572 156 GEPF 159 (204)
Q Consensus 156 ~~~~ 159 (204)
....
T Consensus 345 ~e~~ 348 (381)
T COG0116 345 SEDL 348 (381)
T ss_pred cHHH
Confidence 6554
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=3e-06 Score=74.41 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---------------------------------------
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--------------------------------------- 73 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------------------------------------- 73 (204)
.+.+.+.++.... ...++..++|.+||+|.+.+..+....
T Consensus 174 ~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 174 KENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred cHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4445555554332 125678999999999999988865310
Q ss_pred --CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEECCCccchh----------H
Q psy10572 74 --PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTIP----------Q 139 (204)
Q Consensus 74 --~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~~----------~ 139 (204)
...+++|+|+++.+++.|+.|+...+. ...+.+.++|+.....+ .+++|+|++|+++..-. .
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 113699999999999999999988651 24688999998754332 24699999999984311 1
Q ss_pred H---HHHhcCCCcEEEEEecCCC
Q psy10572 140 K---LLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 140 ~---~~~~Lk~gG~l~~~~~~~~ 159 (204)
. ..+...+|+.+++.++...
T Consensus 329 ~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeCCHH
Confidence 2 2333448999988776554
No 216
>KOG2187|consensus
Probab=98.54 E-value=4.7e-07 Score=74.49 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=86.4
Q ss_pred ccccccccCCcccCCh-HHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 19 RIKSRQIGYGADISSP-HIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
.+..+.+..+.+.... ...+.+...+.+. ++.+..++|++||+|.++..+++... +|+|+|+++..+..|+.++
T Consensus 349 ~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcc
Confidence 4445555555555333 2333333333332 57889999999999999999999774 9999999999999999999
Q ss_pred hhcCccccCccceEEEEecCCCCC---CCC--CCee-EEEECCCccc----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 96 DKGNSELLDQGRVQFVVWNGKHGY---ERE--APYD-IIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~~~D-~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..++ ..|.+|+.+-..+.. ... .+-+ +++++++-.. +++.+.++-++-=.++++|...
T Consensus 426 ~~Ng-----isNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 426 QING-----ISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hhcC-----ccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 8865 579999999434322 111 2345 5666665443 2333444434666666666433
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=1.1e-06 Score=65.65 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC-eeEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP-YDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~v~ 129 (204)
+.+++|||+|.|.-++.++-.. |+.+++-+|.....+...+..... ++.+|++++++.+.+.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEE
Confidence 5899999999999999988665 777899999998888888777666 4578999999987655432 23 99999
Q ss_pred ECCCc--cchhHHHHHhcCCCcEEEEE
Q psy10572 130 VSPSY--FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 130 ~~~~~--~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+.. ..+.+-+..++++||.+++-
T Consensus 141 sRAva~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 141 SRAVASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred eehccchHHHHHHHHHhcccCCcchhh
Confidence 97654 45778899999999987653
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.51 E-value=4.7e-06 Score=62.01 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=79.0
Q ss_pred HHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.+.+.++..+. -.++++.+||-+|+.+|....+++...++++.|+++|.++......-..++. -+|+--+-.
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~ 129 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILE 129 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeec
Confidence 34444443333 2368899999999999999999999998889999999999765555444433 257888888
Q ss_pred cCCCCC---CCCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGY---EREAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~---~~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+.... .--+..|+|+.+-..++ +...+...||+||.+++.+-
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 876321 11247999999877665 44677789999999999774
No 219
>KOG3115|consensus
Probab=98.49 E-value=7.3e-07 Score=65.00 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=94.1
Q ss_pred cccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 5 DRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 5 ~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
|..+|...+. +.++.|..+..+....-+ ++....-+... ..++.-.+.|||||-|.+...++..+ |+..++|.|+
T Consensus 17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~m--DWS~~yp~f~~-~~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEI 92 (249)
T KOG3115|consen 17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEM--DWSKYYPDFRR-ALNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEI 92 (249)
T ss_pred cHHHHHHHHhhcCCCccCcccCCCChHhC--cHHHhhhhhhh-hccccceEEeeccCccchhhhccccC-ccceeeeehh
Confidence 4555555555 777777777655432111 11111222222 13455689999999999999999998 8889999999
Q ss_pred CHHHHHHHHHHhhhcCccc--cCccceEEEEecCCC---CCCCCCCeeEEEECCCccc--------------hhHHHHHh
Q psy10572 84 VMELAESSIKNIDKGNSEL--LDQGRVQFVVWNGKH---GYEREAPYDIIHVSPSYFT--------------IPQKLLDQ 144 (204)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~ 144 (204)
--...+..+.++.+-.... -..+|+.+.+.+... ..+..+..+-.+...+.++ ++.+...+
T Consensus 93 R~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~ 172 (249)
T KOG3115|consen 93 RDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYV 172 (249)
T ss_pred hHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhh
Confidence 8888888888876521110 124678888877653 3344455554544444433 45677889
Q ss_pred cCCCcEEEEEe
Q psy10572 145 LVPGGRMVMPV 155 (204)
Q Consensus 145 Lk~gG~l~~~~ 155 (204)
|++||.++..+
T Consensus 173 l~~gg~~ytit 183 (249)
T KOG3115|consen 173 LREGGILYTIT 183 (249)
T ss_pred hhcCceEEEEe
Confidence 99999998855
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.48 E-value=1.6e-06 Score=64.70 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc----cccCccceEE
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS----ELLDQGRVQF 110 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 110 (204)
.....+++.+. +.++...+|+|||.|.....++... +-.+.+|||+.+...+.|......... .......+++
T Consensus 29 ~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 29 EFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44555566555 6888999999999999988887765 333699999999998888765432100 0012357888
Q ss_pred EEecCCCCCCC---CCCeeEEEECCCccc--h---hHHHHHhcCCCcEEEE
Q psy10572 111 VVWNGKHGYER---EAPYDIIHVSPSYFT--I---PQKLLDQLVPGGRMVM 153 (204)
Q Consensus 111 ~~~d~~~~~~~---~~~~D~v~~~~~~~~--~---~~~~~~~Lk~gG~l~~ 153 (204)
.++|+...... -...|+|++|..... + +.+....||+|.+++.
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 88887643211 134799999876533 2 2455567888888765
No 221
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.45 E-value=2.1e-06 Score=68.07 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
+...+||-+|.|.|.....+.+.- .-.+++-+|++|.+++.++.+. .+........++++++..|+.+... ....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 566799999999999999999873 2569999999999999999554 3322222456789999999765332 23589
Q ss_pred eEEEECCCccch-----------hHHHHHhcCCCcEEEEEecCCCCc-ceEEEEee
Q psy10572 126 DIIHVSPSYFTI-----------PQKLLDQLVPGGRMVMPVGEPFKG-QNLTIIDK 169 (204)
Q Consensus 126 D~v~~~~~~~~~-----------~~~~~~~Lk~gG~l~~~~~~~~~~-~~~~~~~~ 169 (204)
|.||.+.+.+.. -..+.+.|+++|++++.-.+.... ...+++.+
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~a 422 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDA 422 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehh
Confidence 999998766542 256779999999999977665532 33444443
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.44 E-value=3.6e-06 Score=64.96 Aligned_cols=117 Identities=16% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCC--CC-CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGY--ER-EA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~--~~-~~ 123 (204)
....+|+||.||.|..........+. ...+.-.|.++..++..++.++..+ ..++ +|.++|+.+.. .. ..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceEEEecCCCCHhHhhccCC
Confidence 45679999999999998888777632 2588889999999999999998754 4444 99999987531 11 23
Q ss_pred CeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEe--cCCCCcceEEEEeec
Q psy10572 124 PYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPV--GEPFKGQNLTIIDKL 170 (204)
Q Consensus 124 ~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~--~~~~~~~~~~~~~~~ 170 (204)
..+++++...+.- .+..+..++.|||.++.+- |+++.+.....+..+
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence 4788887766543 3456778999999999987 566544444444443
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.43 E-value=1.1e-06 Score=64.36 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--------CCCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--------HGYER 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--------~~~~~ 121 (204)
.+.++||+||++|.++..+.++.++.+.++|+|+.+.. ..+++..+.+|.. .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------------~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------------PLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------------cccceeeeecccchhhHHHhhhhhcc
Confidence 34899999999999999999987456799999998760 0123444444432 11111
Q ss_pred --CCCeeEEEECCCcc--------c---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 122 --EAPYDIIHVSPSYF--------T---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 122 --~~~~D~v~~~~~~~--------~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..++|+|+++.... + .+.-+...|+|||.+++.+....
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 26899999987321 1 12355577999999999887754
No 224
>KOG4589|consensus
Probab=98.43 E-value=2.3e-06 Score=61.65 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCC-------
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHG------- 118 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~------- 118 (204)
+++|+.+|||+||.+|.++....+..+|.+.|.|||+-... ..+.+.++.+ |+.+.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHH
Confidence 35899999999999999999999998889999999974321 1234555555 43321
Q ss_pred -CCCCCCeeEEEECCCc--------cc---------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 119 -YEREAPYDIIHVSPSY--------FT---------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~--------~~---------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
..++.+.|+|+++-.- .| .+.-+...++|+|.+++.+|.+...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 1355789999886322 11 1123346689999999999988744
No 225
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=7.9e-06 Score=63.37 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+-+...+++.+. ++++...+|..-|.|+.+..+.+.+++.++++|+|.++.+++.|++.+.... +++.+++.
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence 446777888887 7888999999999999999999998666789999999999999999987633 58999998
Q ss_pred cCCCCC-----CCCCCeeEEEEC
Q psy10572 114 NGKHGY-----EREAPYDIIHVS 131 (204)
Q Consensus 114 d~~~~~-----~~~~~~D~v~~~ 131 (204)
++.... ...+.+|-|+.+
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEe
Confidence 865211 123567877665
No 226
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.40 E-value=2.9e-06 Score=66.74 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.|-+...+++.+. +.++..++|..+|.|..+..+++.+ +.++++|+|.++.+++.+++++... ..++.+++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~ 75 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIH 75 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEe
Confidence 3456777888776 6788899999999999999999987 3589999999999999999987653 25799999
Q ss_pred ecCCCCC-----CCCCCeeEEEECCCc
Q psy10572 113 WNGKHGY-----EREAPYDIIHVSPSY 134 (204)
Q Consensus 113 ~d~~~~~-----~~~~~~D~v~~~~~~ 134 (204)
+++.... ....++|.|+++.+.
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 9876321 122569999887544
No 227
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.39 E-value=7.7e-06 Score=68.92 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=96.4
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
|.+++++++...+++.+. +.+..+|+|..||+|.+.....+.+.. ...++|.|.++.....++.+.-.++. .
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---E 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---C
Confidence 788999999999999998 466779999999999988777776632 36799999999999999999877552 1
Q ss_pred ccceEEEEecCCCCC-C----CCCCeeEEEECCCccc-------------------------------hhHHHHHhcCCC
Q psy10572 105 QGRVQFVVWNGKHGY-E----REAPYDIIHVSPSYFT-------------------------------IPQKLLDQLVPG 148 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~-~----~~~~~D~v~~~~~~~~-------------------------------~~~~~~~~Lk~g 148 (204)
. ++...++|-...+ . ..+.||.|++|+++.. +++.+...|+||
T Consensus 241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 1 3455555544322 1 3367999999988730 236788999999
Q ss_pred cEEEEEecCCCCc
Q psy10572 149 GRMVMPVGEPFKG 161 (204)
Q Consensus 149 G~l~~~~~~~~~~ 161 (204)
|+..+.++.+...
T Consensus 320 g~aaivl~~gvlf 332 (489)
T COG0286 320 GRAAIVLPDGVLF 332 (489)
T ss_pred ceEEEEecCCcCc
Confidence 9888877776533
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.39 E-value=1.8e-05 Score=62.96 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--E
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--V 111 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 111 (204)
.......+...+.++..++|+|||+|.-+..+...+. ....++++|+|...++.+..++... ..+.+++ +
T Consensus 63 L~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l 137 (319)
T TIGR03439 63 LKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGL 137 (319)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEE
Confidence 3333444444567788999999999999888877663 2357999999999999999988721 1245555 7
Q ss_pred EecCCCCC--CC----CCCeeEEEECC-Ccc--------chhHHHHH-hcCCCcEEEEEec
Q psy10572 112 VWNGKHGY--ER----EAPYDIIHVSP-SYF--------TIPQKLLD-QLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~d~~~~~--~~----~~~~D~v~~~~-~~~--------~~~~~~~~-~Lk~gG~l~~~~~ 156 (204)
.+|..... .+ .....+++..+ .+. .+++.+.+ .|+|||.+++.+-
T Consensus 138 ~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 138 LGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred EecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 77764321 11 12345554433 222 25578888 9999999999654
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.38 E-value=9.8e-07 Score=63.63 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
...+.|+|+|+|.++...++... +|+++|.+|.....|.+|+..+ +..|++++.+|+....+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~-----g~~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVP-----GDVNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCC-----CCcceEEEecccccccc--cccceeHH
Confidence 47899999999999999988753 9999999999999999997653 36799999999887777 34788876
Q ss_pred CCCc--------cchhHHHHHhcCCCcEEE
Q psy10572 131 SPSY--------FTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 131 ~~~~--------~~~~~~~~~~Lk~gG~l~ 152 (204)
-... -.+++.++..||-++.++
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 4322 124567777888888775
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.33 E-value=8.3e-06 Score=57.34 Aligned_cols=107 Identities=27% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
.+...|+|+|||.|+++..++..+ .+..+|+++|.++...+.+..+.+..... ...++.+..++..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhc-ccCCC
Confidence 567799999999999999999843 24579999999999999998887663310 0135555555543321 23567
Q ss_pred eEEEECCCccchhHHHHHh-cCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTIPQKLLDQ-LVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~-Lk~gG~l~~~~~~~ 158 (204)
++++.-.....+...+.+. .+++-..++.++-.
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIRPNARFLVLVPCC 134 (141)
T ss_pred eEEEEeecccchHHHHHHHHHHcCCCEEEEcCCc
Confidence 7887766665554433332 34666666555544
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.30 E-value=6.5e-06 Score=61.37 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=56.8
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCC
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPS 133 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 133 (204)
|.||||.-|+++.+|.+.. ...+++++|+++..++.|+.++...+ ...+++++.+|......+.+..|.|++.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999986 45589999999999999999998855 246899999998876655444788876654
Q ss_pred c
Q psy10572 134 Y 134 (204)
Q Consensus 134 ~ 134 (204)
-
T Consensus 76 G 76 (205)
T PF04816_consen 76 G 76 (205)
T ss_dssp -
T ss_pred C
Confidence 4
No 232
>KOG3045|consensus
Probab=98.29 E-value=3.9e-06 Score=63.55 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.. ......|-|+|||-+.++. .. ...|+.+|+.+ .+-+++..|+...
T Consensus 170 ~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 170 VIIRKIKR-RPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------------VNERVIACDMRNV 222 (325)
T ss_pred HHHHHHHh-CcCceEEEecccchhhhhh---cc---ccceeeeeeec--------------------CCCceeeccccCC
Confidence 34444441 2345689999999988866 22 23899999643 3567788888888
Q ss_pred CCCCCCeeEEEECCCc-----cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSY-----FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++++.|++++...+ .+++.++.++|++||.+++......
T Consensus 223 Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 8888999999776443 4577999999999999999665443
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.27 E-value=1.2e-05 Score=62.38 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
..+|+=||||+=-++ +.+++....++.++++|+++.+++.+++.+.... ....++.++.+|......+-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~---~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL---GLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH------HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc---cccCCeEEEecchhccccccccCCEEE
Confidence 359999999985554 5556554456789999999999999998877211 014579999999765544446799999
Q ss_pred ECCCcc-------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 130 VSPSYF-------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 130 ~~~~~~-------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+... .+++++.+.++||..+++-...+
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 877654 37899999999999999965444
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=98.24 E-value=7.4e-06 Score=62.28 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=68.9
Q ss_pred HHHHHHhccCCCCC--EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCc---cceEEEE
Q psy10572 39 QMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQ---GRVQFVV 112 (204)
Q Consensus 39 ~~~~~l~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~---~~~~~~~ 112 (204)
.+++.+. ++++. +|||..+|.|..+..++.+. +.|+++|.++......+.++... ....+.. .++++++
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 4455554 56766 99999999999999999864 48999999999999988887762 1011111 5789999
Q ss_pred ecCCCCCC-CCCCeeEEEECCCccc
Q psy10572 113 WNGKHGYE-REAPYDIIHVSPSYFT 136 (204)
Q Consensus 113 ~d~~~~~~-~~~~~D~v~~~~~~~~ 136 (204)
+|...... ...+||+|++++++++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 98764332 1236999999999976
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=59.79 Aligned_cols=83 Identities=33% Similarity=0.360 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++.+..+.||||--++++.++.+.. +...+++.|+++..++.|.+++.++. ..+.+++..+|.......+..+|+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCE
Confidence 4566679999999999999999987 66789999999999999999998865 356899999998766555557998
Q ss_pred EEECCCcc
Q psy10572 128 IHVSPSYF 135 (204)
Q Consensus 128 v~~~~~~~ 135 (204)
+++.++-.
T Consensus 89 ivIAGMGG 96 (226)
T COG2384 89 IVIAGMGG 96 (226)
T ss_pred EEEeCCcH
Confidence 87765543
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.17 E-value=9.7e-06 Score=56.91 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=48.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.++|+|||.|..+..+++.. +.++++++|+++.+.+.++++++.+. .+++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 48999999999999999886 66789999999999999999987743 245777776644
No 237
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.17 E-value=3.7e-06 Score=69.36 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=59.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEE-----EcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCCCCCCCCC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGV-----EHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKHGYEREAP 124 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 124 (204)
..+||+|||+|.++.++..+. |+.+ |..+..++.|-++ .+..+.+- -...+++.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR------------Gvpa~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER------------GVPAMIGVLGSQRLPFPSNA 181 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc------------CcchhhhhhccccccCCccc
Confidence 479999999999999998863 3333 3333444444332 12222211 1345577789
Q ss_pred eeEEEECCCccc-------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT-------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~-------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|.|...... ++-++-++|+|||+++.+-+.-.
T Consensus 182 fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 999988765533 34578899999999999776543
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=1e-05 Score=58.82 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-.+++|||+|+|+|..++..++... ..++..|+.+......+-|.+.|+ -++.+...|... ++..+|++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeEE
Confidence 4678999999999999999988753 488999999999888888887755 578888888665 34679999
Q ss_pred EECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+....+.. .+-.+...|+..|..++.-.+.
T Consensus 147 LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 147 LAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred EeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 88766543 2233667777777776644333
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.11 E-value=4.6e-05 Score=59.73 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCc-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC----CCC-CCCCC
Q psy10572 51 GARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK----HGY-EREAP 124 (204)
Q Consensus 51 ~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~-~~~~~ 124 (204)
..++||||||.. ...+..++.. +.+.+|.|+++..++.|++++..+. ....+|+++...-. ... .+.+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~---~L~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNP---NLESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcc---ccccceEEEEcCCccccchhhhcccce
Confidence 458999999975 4455555554 3599999999999999999999862 13467888765422 211 22367
Q ss_pred eeEEEECCCccchhHHHH
Q psy10572 125 YDIIHVSPSYFTIPQKLL 142 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~ 142 (204)
||+.+||++++...+++.
T Consensus 178 ~dftmCNPPFy~s~~e~~ 195 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQEEAE 195 (299)
T ss_dssp EEEEEE-----SS-----
T ss_pred eeEEecCCccccChhhhc
Confidence 999999999987665443
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.09 E-value=5.6e-07 Score=60.04 Aligned_cols=95 Identities=28% Similarity=0.405 Sum_probs=38.4
Q ss_pred EEEcCCCcHHHHHHHHHhCCCc--eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEEEE
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEG--RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDIIHV 130 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 130 (204)
||+|+..|..+..+++.+.+.. +++++|..+. .+.+++.++... ...+++++.++..+.. .+..++|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999988774433 7999999995 222233322211 1357999999965321 11368999999
Q ss_pred CCCcc-----chhHHHHHhcCCCcEEEEE
Q psy10572 131 SPSYF-----TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 131 ~~~~~-----~~~~~~~~~Lk~gG~l~~~ 154 (204)
+..-. .-++.+.+.|+|||++++.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 98632 2447788899999999873
No 241
>KOG2198|consensus
Probab=98.06 E-value=4.3e-05 Score=60.87 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG------ 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 118 (204)
++|+.+|||+++.+|.-+..+.+.+-. .+.+++-|.++..+......... +..++..+...++...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccccccc
Confidence 689999999999999999888776521 34899999999998888777644 2234555555443311
Q ss_pred -CC--CCCCeeEEEECCCccc-----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 119 -YE--REAPYDIIHVSPSYFT-----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 119 -~~--~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.. ....||-|+++.++.. ++...+++||+||+++.++++...-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 11 2246999999876632 2356779999999999999877643
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.06 E-value=6.9e-05 Score=58.59 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
...+|||+|||+|..+-.+...++...+++.+|.|+.+++.++..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 456999999999987777766664334899999999999999887765
No 243
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.04 E-value=2.6e-05 Score=54.22 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=56.0
Q ss_pred eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCeeEEEECCCccc---------------hhH
Q psy10572 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT---------------IPQ 139 (204)
Q Consensus 77 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~---------------~~~ 139 (204)
+|+|+|+.+.+++..++++.... ...+++++..+.... ..+.+++|.++.|.++-- .++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999998854 234799998876532 233358999999876621 347
Q ss_pred HHHHhcCCCcEEEEEecCCC
Q psy10572 140 KLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 140 ~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++|+|||++.+.++.+-
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 88999999999999987765
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.01 E-value=0.00018 Score=50.54 Aligned_cols=101 Identities=29% Similarity=0.346 Sum_probs=67.9
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCC-CCeeEEEE
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYERE-APYDIIHV 130 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~ 130 (204)
++|+|||+|... .+.........++++|.++.++..++..... . ....+.+...+... ..... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 4444431113789999999999885544322 1 00115777777654 33433 47999944
Q ss_pred CCCc-----cchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 131 SPSY-----FTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 131 ~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
.... ......+.+.++|+|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 3333 34668889999999999998876553
No 245
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.99 E-value=0.00025 Score=56.47 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++..+||+||++|.++..+.++. +.|++||..+ +- ..+.. .+++.....|.....++.+++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~----~~L~~-------~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MA----QSLMD-------TGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cC----HhhhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence 3678899999999999999999974 3999999544 21 22222 46888988887655443578999
Q ss_pred EEECCCcc--chhHHHHHhcCCC
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPG 148 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~g 148 (204)
++++.... .+.+.+.+.|..|
T Consensus 274 vVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 274 LVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEecccCHHHHHHHHHHHHhcC
Confidence 99987653 2445555555444
No 246
>KOG1331|consensus
Probab=97.97 E-value=1.2e-05 Score=61.85 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D 126 (204)
...+..++|+|||.|-... ..|.+.++|.|++...+..++.. +. .+...|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 4558899999999986532 12567899999999888887652 22 577888888888889999
Q ss_pred EEEECCCccch---------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTI---------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~---------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++....+|+ ++++.+.|+|||...+.++...
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99999999884 4788899999999988777654
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00025 Score=52.07 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.+.+.++.-+.. .++++.+||=+|+.+|....+++.-.+ .+.++++|.++......-..+.. -+|+--+-+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 344444444442 258899999999999999999999884 78999999999877666655544 257777888
Q ss_pred cCCCCCC---CCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGYE---REAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~~---~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+..... --+..|+|+.+-..+. +...+...|+++|.+++.+-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 8664321 0146999998876655 44678889999998877654
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.87 E-value=5.4e-05 Score=59.65 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
|-+...+++.+. +.++..++|...|.|+.+..+++.+ +.++++|+|.++.+++.+++++... .+++.++++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEec
Confidence 456777888887 7888999999999999999999988 4589999999999999999887652 368999999
Q ss_pred cCCCCC-----C-CCCCeeEEEECCCc
Q psy10572 114 NGKHGY-----E-REAPYDIIHVSPSY 134 (204)
Q Consensus 114 d~~~~~-----~-~~~~~D~v~~~~~~ 134 (204)
++.... . ....+|-|+++.+.
T Consensus 77 ~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 77 NFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp -GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred cHHHHHHHHHHccCCCccCEEEEcccc
Confidence 866321 1 23579999887544
No 249
>KOG2352|consensus
Probab=97.87 E-value=0.00023 Score=58.73 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=81.9
Q ss_pred HhccCCCCC-EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC
Q psy10572 44 LKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 44 l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
+..++.+.. +++-+|||+..++..+.+.+. ..++.+|.|+..++.....-.. ..+...+...|.....++.
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCC
Confidence 334456666 999999999999888877653 3899999999998888766533 2356888999988888999
Q ss_pred CCeeEEEECCCccch----------------hHHHHHhcCCCcEEEEEec
Q psy10572 123 APYDIIHVSPSYFTI----------------PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~----------------~~~~~~~Lk~gG~l~~~~~ 156 (204)
++||+|+.-+.++++ .....++|+++|+.+..+.
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 999999876665442 3577899999999877665
No 250
>KOG1596|consensus
Probab=97.87 E-value=0.00011 Score=55.17 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=78.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REA 123 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~ 123 (204)
+++|+.+||=+|+++|.....+....++++-|+++|.++..-.......++ -+|+--+..|+..... .-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeeee
Confidence 468999999999999999999999988999999999888654444333322 2466667777653321 114
Q ss_pred CeeEEEECCCccch----hHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYFTI----PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~~~----~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..|+|+++-..++. .-.+...||+||.+++++-.+.
T Consensus 226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikanc 265 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANC 265 (317)
T ss_pred eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence 68999988776653 3467788999999999886554
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.86 E-value=0.00013 Score=55.39 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+.+.+-..+.+..+|+|||||.--++....... +...++|+|++..+++.....+..- ..+..+...|..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l------~~~~~~~v~Dl~ 164 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVL------GVPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHT------T-CEEEEEE-TT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhh------CCCcceeEeeee
Confidence 444555555555678899999999998888777654 5679999999999999998887662 246777788866
Q ss_pred CCCCCCCCeeEEEECCCccch
Q psy10572 117 HGYEREAPYDIIHVSPSYFTI 137 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~ 137 (204)
.. .+..+.|+.+..-.++-+
T Consensus 165 ~~-~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 165 SD-PPKEPADLALLLKTLPCL 184 (251)
T ss_dssp TS-HTTSEESEEEEET-HHHH
T ss_pred cc-CCCCCcchhhHHHHHHHH
Confidence 65 344679999888776543
No 252
>KOG2730|consensus
Probab=97.85 E-value=3e-05 Score=57.49 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
....|+|.-||.|+-++..+.... .|+++|++|.-+.-|+.|++-.+. .++++|+++|+.+.. +....+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhhee
Confidence 556899999999999988888763 899999999999999999987662 349999999977432 223447
Q ss_pred eEEEECCCc
Q psy10572 126 DIIHVSPSY 134 (204)
Q Consensus 126 D~v~~~~~~ 134 (204)
|.|+..++.
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 788877665
No 253
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.82 E-value=0.00019 Score=57.28 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~ 124 (204)
++|+.+|+-+|+|- |.++..+++..+ ++|+++|.++.-.+.|++.-+. .++... .....+ .+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~-~~~~~~~~~~~ 229 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSS-DSDALEAVKEI 229 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcC-CchhhHHhHhh
Confidence 58899999999993 567778888763 7999999999999999876433 223322 111111 123
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+|+...+ ...++...+.|+++|++++.=..
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 999999999 88999999999999999885544
No 254
>KOG1269|consensus
Probab=97.81 E-value=7e-05 Score=60.55 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=81.8
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
...+..-..++..++|+|||.|....++.... .+.++|++.++..+..+........ ...+..++..++...++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPF 174 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCC
Confidence 33444445777799999999999999888764 4689999999988777766654422 12234447778788888
Q ss_pred CCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 121 REAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+++.||.+.+.....+ +.+++.++++|||.+++..+
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 8999999977655443 55899999999999998554
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.79 E-value=0.00063 Score=52.45 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCCC-CEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 36 IHAQMLELLKDKIKPG-ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~-~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.....++.+. -..| ...||||||- -..+-.+++...|+++|.-+|.+|-.+..++..+..+. .....+++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~ 127 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence 3444444444 1213 5899999993 33445566666689999999999999999998876632 12389999
Q ss_pred ecCCCCC-----------CC-CCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGY-----------ER-EAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~-----------~~-~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.+.. .. ..+. .+++...+++ ++..+...|.||+.|+++.....
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 9977321 11 1223 3344444443 55788999999999999887665
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00014 Score=53.01 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHH----HHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA----ESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
++++.+|+|+-.|.|+++..++...++.+.|+++-..+... +..+.+..... ....|.+.+-.+..... ...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccC-CCC
Confidence 58999999999999999999999998888998875443311 10111110000 01234444444433322 334
Q ss_pred CeeEEEECCCccc-------------hhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFT-------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~-------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..|+++.+..++. +...+.+.|||||.+.+..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 5666665444432 3368889999999998855
No 257
>KOG3178|consensus
Probab=97.77 E-value=0.00019 Score=56.94 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=72.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
...+|+|.|.|..+..+.... | ++-+++.+...+..+++.+. +.++.+.+|..+. .|+ -|+|++-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~-~P~--~daI~mk 243 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQD-TPK--GDAIWMK 243 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceeccccccc-CCC--cCeEEEE
Confidence 689999999999999998876 4 78899988888887777653 3478888998877 443 4588887
Q ss_pred CCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 132 PSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 132 ~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
-.+++ ++++++..|+|||.+++.-.
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77765 55899999999999999665
No 258
>KOG1709|consensus
Probab=97.76 E-value=0.00032 Score=52.02 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 126 (204)
.++.+||++|-|.|.....+...- +. .=+.+|..+..++..+...-. ...|+.+..+-+.+. ..+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p~-~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-PD-EHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-Cc-ceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence 678899999999999988888875 44 445579999999998876432 235777777765532 23456799
Q ss_pred EEEECCCc------cchhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSY------FTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~------~~~~~~~~~~Lk~gG~l~~ 153 (204)
-|+.+.-. .++.+.+.++|||+|.+-.
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 99877542 2355888999999998855
No 259
>KOG3987|consensus
Probab=97.76 E-value=9.8e-06 Score=59.48 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=75.4
Q ss_pred cCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 31 ISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
+.++...+.++..-.+.- ..+.++||+|+|.|-.+..++..+. +|++.|.|..|....++. +..
T Consensus 92 ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~yn 156 (288)
T KOG3987|consen 92 IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYN 156 (288)
T ss_pred EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCc
Confidence 356666666554432211 2346999999999999999999884 899999999998877653 222
Q ss_pred EEEe-cCCCCCCCCCCeeEEEECCCcc------chhHHHHHhcCC-CcEEEEEecCCC
Q psy10572 110 FVVW-NGKHGYEREAPYDIIHVSPSYF------TIPQKLLDQLVP-GGRMVMPVGEPF 159 (204)
Q Consensus 110 ~~~~-d~~~~~~~~~~~D~v~~~~~~~------~~~~~~~~~Lk~-gG~l~~~~~~~~ 159 (204)
++.. ++.+. .-++|+|.|...+. .+++.+..+|+| +|++++...-+.
T Consensus 157 Vl~~~ew~~t---~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~ 211 (288)
T KOG3987|consen 157 VLTEIEWLQT---DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY 211 (288)
T ss_pred eeeehhhhhc---CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 2221 11121 24699997765443 367899999999 899988765443
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.71 E-value=0.0034 Score=47.62 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC--CCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE--APYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D 126 (204)
-.+++||-+|-.- ..++.++... ...+++.+|+++..++..++..+..+ . +++....|+....+++ ++||
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEG-----L-PIEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BS
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceEEEEecccccCCHHHhcCCC
Confidence 3578999998554 2333333322 34599999999999999998887744 3 4899999988776553 7899
Q ss_pred EEEECCCccc-----hhHHHHHhcCCCc-EEEEEecCCC
Q psy10572 127 IIHVSPSYFT-----IPQKLLDQLVPGG-RMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~-----~~~~~~~~Lk~gG-~l~~~~~~~~ 159 (204)
+++.+++..- ++.+....||..| ..++.+....
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 9999999854 5577778887776 6666666554
No 261
>KOG0024|consensus
Probab=97.70 E-value=0.00041 Score=54.53 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC-----C---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG-----K---HG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~---~~ 118 (204)
.+++.+||-+|+|+ |..+...++.. ...+|+.+|+++..++.|++ +.. ..+....... . +.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHh
Confidence 68899999999998 99999999988 45699999999999999998 422 1111111110 0 11
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
......+|+.+.........+.+...++.+|.+++.-+..
T Consensus 237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC
Confidence 2233459999999999999999999999999977755443
No 262
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.67 E-value=0.00084 Score=52.05 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccC------CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh----c-------
Q psy10572 36 IHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK----G------- 98 (204)
Q Consensus 36 ~~~~~~~~l~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~------- 98 (204)
....+++.+.... +.+.+||--|||-|+++-.++... ..+.|.|.|-.|+-..+-.+.. +
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf 112 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPF 112 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecc
Confidence 4445555555432 234699999999999999999975 3899999999986554443211 0
Q ss_pred ---Ccc---------------------ccCccceEEEEecCCCCCCCC---CCeeEEEECCCcc------chhHHHHHhc
Q psy10572 99 ---NSE---------------------LLDQGRVQFVVWNGKHGYERE---APYDIIHVSPSYF------TIPQKLLDQL 145 (204)
Q Consensus 99 ---~~~---------------------~~~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~~~------~~~~~~~~~L 145 (204)
.++ .....++.+..+|+.+...+. +.||.|+...-.. ..++.+.++|
T Consensus 113 ~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 113 VHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred eecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHh
Confidence 000 001235666777766544443 6899987654332 2558899999
Q ss_pred CCCcEEEEEecC
Q psy10572 146 VPGGRMVMPVGE 157 (204)
Q Consensus 146 k~gG~l~~~~~~ 157 (204)
|||| +++.+++
T Consensus 193 kpgG-~WIN~GP 203 (270)
T PF07942_consen 193 KPGG-YWINFGP 203 (270)
T ss_pred ccCC-EEEecCC
Confidence 9999 5555543
No 263
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=0.001 Score=53.93 Aligned_cols=101 Identities=20% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCC---CCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGK---HGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~ 123 (204)
.++.+|+-+|||+ |.++..+++.. ....++++|.++..++.|++...... +..... +.. .......
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~--------~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADV--------VVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeE--------eecCccccHHHHHHHHhCCC
Confidence 4445999999998 99998888887 45699999999999999988543311 111111 100 0112223
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+|+++-..+....++.+..+++++|.+.+.-...
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 69999999887778899999999999998855443
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.62 E-value=0.00021 Score=54.02 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCCC--CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc-cc---CccceEEEEecCCCCC-C
Q psy10572 48 IKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE-LL---DQGRVQFVVWNGKHGY-E 120 (204)
Q Consensus 48 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~~d~~~~~-~ 120 (204)
++++ .+|||..+|-|..+..++... ++|+++|.||.+....+.-+...... .. ...+++++++|..+.. .
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 3454 499999999999999998643 59999999998776666554331100 00 1258999999987654 3
Q ss_pred CCCCeeEEEECCCccc
Q psy10572 121 REAPYDIIHVSPSYFT 136 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~ 136 (204)
+..+||+|++++++++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 3578999999998865
No 265
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.61 E-value=0.00046 Score=56.29 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||.=+|+|.=++..++.++....|+.-|+|+.+++..+.|++.++. ....+++.+.|+...+ .....||+
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~---~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL---EDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc---cCceEEEehhhHHHHhhhccccCCE
Confidence 4567999999999999999999864445899999999999999999988762 2235888888866433 24578999
Q ss_pred EEECCCcc--chhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|=+++--. .+++.+.+.++.||.|.++.-
T Consensus 125 IDlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 125 IDLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 98775332 477999999999999998654
No 266
>KOG2671|consensus
Probab=97.60 E-value=0.00026 Score=55.98 Aligned_cols=103 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHH-------HHHHHhhhcCccccCccceEEEEecCCC-CC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE-------SSIKNIDKGNSELLDQGRVQFVVWNGKH-GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 119 (204)
+.+|+-|.|---|+|.+....++.. +.|+|.|++-.++. ..+.|+++.+ ....-+.+..+|... .+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSSQFLDVLTADFSNPPL 279 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhC---CcchhhheeeecccCcch
Confidence 7899999999999999988888754 49999999988776 3455555544 122346677788663 33
Q ss_pred CCCCCeeEEEECCCcc---------------------------------------chhHHHHHhcCCCcEEEEEec
Q psy10572 120 EREAPYDIIHVSPSYF---------------------------------------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~---------------------------------------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.++..||.|+|++++. +++.-..+.|..||++++-.+
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 4467899999998871 133566689999999988555
No 267
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.56 E-value=0.00031 Score=54.09 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-ccc-----------------------
Q psy10572 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-ELL----------------------- 103 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~----------------------- 103 (204)
.++.++||||||+-... +.+.+.+. +++..|..+...+..++.++..+. +|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45679999999985542 33334342 899999999998877776644211 110
Q ss_pred CccceEEEEecCCCCC-CCC-----CCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 104 DQGRVQFVVWNGKHGY-ERE-----APYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~-~~~-----~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...--.++..|..+.. ... .++|+|++...+.. .++.+.++|||||.|++...-+
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0011236677766432 111 24999998876633 4578889999999999965433
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.55 E-value=0.0016 Score=48.33 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.+.-...+.+.+-+ + ++..|+|+|.-.|+.+.+.+.. +++.++|+|+|++-...... ..+.+. ..++++
T Consensus 17 ~P~Dm~~~qeli~~-~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp----~~~rI~ 88 (206)
T PF04989_consen 17 YPQDMVAYQELIWE-L-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP----MSPRIT 88 (206)
T ss_dssp -HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEE
T ss_pred CHHHHHHHHHHHHH-h-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc----ccCceE
Confidence 33344444444442 2 4559999999999888777654 34567999999965433221 111111 236899
Q ss_pred EEEecCCCCC--------CCCCCeeEEEECCCc--cch---hHHHHHhcCCCcEEEEE
Q psy10572 110 FVVWNGKHGY--------EREAPYDIIHVSPSY--FTI---PQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 110 ~~~~d~~~~~--------~~~~~~D~v~~~~~~--~~~---~~~~~~~Lk~gG~l~~~ 154 (204)
++++|..+.. .......+|+.+..- .++ ++....++++|+++++.
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 9999976321 112345577766552 333 35677899999999883
No 269
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00095 Score=50.32 Aligned_cols=97 Identities=27% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCC---CCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGY---EREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~---~~~~~ 124 (204)
.++..+||+|+.+|.++..+.+... .+|+++|+.-..+..- ++. .+++..++ .|+.... +. +.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~-------d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN-------DPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHh---Hhc-------CCcEEEEecCChhhCCHHHcc-cC
Confidence 6788999999999999999999753 4999999876543322 111 23444443 4433221 22 36
Q ss_pred eeEEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 125 YDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 125 ~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.|+++++-.+-. ++..+..++++++.++.-+-+.
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence 788888766644 5578889999999988855443
No 270
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.47 E-value=0.00032 Score=52.18 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=58.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v 128 (204)
.++|||||=+.......... -.|+.||+++. .-.+.+.|+.+.+. +.++||+|
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 69999999865543332222 26999998763 23456777765543 35789999
Q ss_pred EECCCccc---------hhHHHHHhcCCCcE-----EEEEecCCC
Q psy10572 129 HVSPSYFT---------IPQKLLDQLVPGGR-----MVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~---------~~~~~~~~Lk~gG~-----l~~~~~~~~ 159 (204)
.+.-++.. .+.++.+.|+|+|. |+++++...
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 77655533 45788999999999 888777543
No 271
>KOG4058|consensus
Probab=97.38 E-value=0.0018 Score=45.22 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
...+..++.+. .++..+.+|+|+|.|......++... -..+|+|+++-++..++-..-..+ ......|..-|
T Consensus 59 eQv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhh
Confidence 34445556555 47778999999999999988888752 378899999999888876654432 23467788888
Q ss_pred CCCCCCCCCCeeEEEEC-CCccchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 115 GKHGYEREAPYDIIHVS-PSYFTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
+.+....+-.+-+|+.. ..+.++..++..-+..|..++.+-++...
T Consensus 131 lwK~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 131 LWKVDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhhccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 76654433223233322 23456677888888888888876655543
No 272
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0042 Score=49.83 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++++.-..+..+.. .-...|+|.=+|+|.=++.++...+ ..+++.-|+||.+.+.++.|+..|. ..+..++.
T Consensus 37 NRDlsV~~l~~~~~--~~~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n 108 (380)
T COG1867 37 NRDLSVLVLKAFGK--LLPKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNS-----GEDAEVIN 108 (380)
T ss_pred ccchhHHHHHHhhc--cCCeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcC-----cccceeec
Confidence 44444445555541 1177999999999999999999873 3489999999999999999998862 24566666
Q ss_pred ecCCCCCCC-CCCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYER-EAPYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~-~~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.|+...... ...||+|=+++-- ..+++.+.+.++.+|++-++.-..
T Consensus 109 ~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 109 KDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred chHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 675543322 3679999776532 346799999999999998855433
No 273
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.25 E-value=0.0019 Score=52.12 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+||-.|||. |.++..+++..+ ..+++++|.++..++.+++.-...- +.....+........+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~lGa~~v--------i~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAREMGADKL--------VNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHcCCcEE--------ecCCcccHHHHhccCCCCCE
Confidence 4678999999886 778888888763 2368999999999888876321100 00001111111111235999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+...+.....+.+.+.|+++|++++.-
T Consensus 239 vid~~G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 9988776667788999999999998753
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.15 E-value=0.0075 Score=51.13 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecC---------C
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNG---------K 116 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~---------~ 116 (204)
.++.+|+-+|||. |..++..++..+ +.|+++|.++..++.++..-.. .+.+ ...+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~---------~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAE---------FLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCe---------EEEeccccccccccchhhhcc
Confidence 4688999999997 888898999875 4899999999999988763211 0111 00000 0
Q ss_pred CC-------CCCC--CCeeEEEECCCcc-----ch-hHHHHHhcCCCcEEEEEec
Q psy10572 117 HG-------YERE--APYDIIHVSPSYF-----TI-PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 117 ~~-------~~~~--~~~D~v~~~~~~~-----~~-~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. .+.+ ..+|+||.....+ .+ .++..+.+||||.++..-.
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 0011 3599999887753 35 4999999999999876543
No 275
>PHA01634 hypothetical protein
Probab=97.13 E-value=0.0041 Score=42.35 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=42.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
-.+++|+|||++-|..+++++.... -.|+++|+++...+..+++++.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhh
Confidence 4578999999999999999988753 38999999999999999988763
No 276
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.04 E-value=0.019 Score=48.91 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=84.6
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
.+.|.+.+...+...+...+.+...++..|.|..||+|.+.....+... ....++|.|..+.+...++.+...++.
T Consensus 192 t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~- 270 (501)
T TIGR00497 192 KSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI- 270 (501)
T ss_pred CcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-
Confidence 3456778888888888877764334678999999999998765544331 124689999999999999988654321
Q ss_pred ccCccceEEEEecCCCC--CCCCCCeeEEEECCCccc-------------------------------hhHHHHHhcCCC
Q psy10572 102 LLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT-------------------------------IPQKLLDQLVPG 148 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~~~Lk~g 148 (204)
..+......+|-... .....+||.|++|+++.. ++......|++|
T Consensus 271 --~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~g 348 (501)
T TIGR00497 271 --DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQE 348 (501)
T ss_pred --CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCC
Confidence 111222223332221 112346888888775421 124566789999
Q ss_pred cEEEEEecCCC
Q psy10572 149 GRMVMPVGEPF 159 (204)
Q Consensus 149 G~l~~~~~~~~ 159 (204)
|...+..+...
T Consensus 349 G~~aiI~~~gv 359 (501)
T TIGR00497 349 GTAAIVCFPGI 359 (501)
T ss_pred CeEEEEecCCc
Confidence 98777666553
No 277
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.001 Score=52.87 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~ 127 (204)
..+|||+|.|+|.....+...++.--.++.+|.|+..-+.......... .....+...|.... ......|++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-----t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-----TEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-----cccCCCCCCccchhccCCCccceeeh
Confidence 3579999999998877766666322367778888887666654433211 11122222222211 122345777
Q ss_pred EEECCCc---------cchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 128 IHVSPSY---------FTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 128 v~~~~~~---------~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++...-+ ...++.++.++.|||.|+++..+...
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 7654222 12568899999999999998876653
No 278
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.01 E-value=0.004 Score=46.84 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcc----CCCCCEEEEEcCCCcHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 34 PHIHAQMLELLKDK----IKPGARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 34 ~~~~~~~~~~l~~~----~~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
.+....+.+++..- ..+..++||||.|.... .+.-.+.. +-+.+|.|+++..+..|+.++..+.. ....+
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY--gwrfvGseid~~sl~sA~~ii~~N~~---l~~~I 132 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY--GWRFVGSEIDSQSLSSAKAIISANPG---LERAI 132 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee--cceeecCccCHHHHHHHHHHHHcCcc---hhhhe
Confidence 34555666666521 23567899999996433 22112222 23789999999999999999887531 12345
Q ss_pred EEEEecCC----CCC-CCCCCeeEEEECCCccchhHHHH
Q psy10572 109 QFVVWNGK----HGY-EREAPYDIIHVSPSYFTIPQKLL 142 (204)
Q Consensus 109 ~~~~~d~~----~~~-~~~~~~D~v~~~~~~~~~~~~~~ 142 (204)
++....-. ... -..+.||.+.||++++...+.+.
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchhHHHHH
Confidence 55443212 111 22478999999999988664443
No 279
>KOG3201|consensus
Probab=96.96 E-value=0.00033 Score=49.59 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCCCCe
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~ 125 (204)
..+.+|||+|.|. |..++.++... +...|...|-+...++..++....+.. ....++.++..+... ......+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence 3467999999995 77777777766 667899999999988888776554310 112233333322221 11223589
Q ss_pred eEEEECCCcc------chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHVSPSYF------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+|++..... .+.+.+..+|+|.|.-++.-|
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998876552 366889999999999666433
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=96.92 E-value=0.0044 Score=48.80 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
-+++..|||..||+|..+..+.+... +.+|+|+++..++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 48999999999999999888877654 999999999999999999764
No 281
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.90 E-value=0.0092 Score=48.32 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEc---CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 124 (204)
.++.+|+-+|+|. |.++..+++..+ +++++++. ++...+.+++.-. ..+.....+..+ ......
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga---------~~v~~~~~~~~~-~~~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGA---------TYVNSSKTPVAE-VKLVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCC---------EEecCCccchhh-hhhcCC
Confidence 5778999999986 788888888763 48999986 5677676654211 111100111111 111246
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+|+-..+.......+.+.|+++|.+++.
T Consensus 239 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 999998887666778899999999998763
No 282
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.84 E-value=0.0057 Score=46.01 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
+..+...++... .+++..|||.-||+|..+.++.+... +.+|+|+++..++.|++
T Consensus 177 P~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 344455555444 58899999999999999988888654 89999999999998864
No 283
>KOG1501|consensus
Probab=96.80 E-value=0.0055 Score=50.28 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=46.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
..|||||+|+|.+++..++..+ + .++++|.-..|.+.|++...+++ -.+++.++..-
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D-~vtA~EvfkPM~d~arkI~~kng----~SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-D-SVTACEVFKPMVDLARKIMHKNG----MSDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-C-eEEeehhhchHHHHHHHHHhcCC----Cccceeeeccc
Confidence 4799999999999999998863 2 79999999999999999987754 24567766543
No 284
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.77 E-value=0.011 Score=47.65 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-+|||. |.++..+++......+++++|.++..++.++. +.. ...+ .+ ......+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~~----~~~~~g~d 224 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-DD----IPEDLAVD 224 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-hh----hhhccCCc
Confidence 46788999999986 76777777652123589999999988888764 111 1001 11 11112489
Q ss_pred EEEECCC---ccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPS---YFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~---~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+-..+ ....++.+.+.|+++|++++.
T Consensus 225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 9987666 345678899999999999864
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.77 E-value=0.022 Score=42.52 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhh---------------
Q psy10572 36 IHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDK--------------- 97 (204)
Q Consensus 36 ~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------- 97 (204)
+..++.+....++ ..+-++.|-+||+|++...+.-..+ .-..++|.|+++.+++.|++|+..
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 3344444443333 3345999999999998776654432 224899999999999999999731
Q ss_pred ----cCcc-----------------cc-CccceEEEEecCCCCC-----CCCCCeeEEEECCCccc--------------
Q psy10572 98 ----GNSE-----------------LL-DQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT-------------- 136 (204)
Q Consensus 98 ----~~~~-----------------~~-~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~-------------- 136 (204)
.+.+ .. ......+...|+.+.. ......|+|+.+-++-+
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 0000 00 1223556677766421 12234699999877633
Q ss_pred -hhHHHHHhcCCCcEEEE
Q psy10572 137 -IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 137 -~~~~~~~~Lk~gG~l~~ 153 (204)
+++.+..+|-.++++.+
T Consensus 195 ~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 55788899954455544
No 286
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.69 E-value=0.0087 Score=40.94 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCCCCCCeeEEEECCC
Q psy10572 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHVSPS 133 (204)
Q Consensus 60 G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v~~~~~ 133 (204)
|.|..+..+++..+ ++++++|.++...+.+++.-.. .++..+-. ....+...+|+|+-..+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~-----------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGAD-----------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTES-----------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccc-----------ccccccccccccccccccccccceEEEEecC
Confidence 35788899999874 7999999999999998765321 11111111 11123357999999999
Q ss_pred ccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 134 YFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 134 ~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.....+....+|+++|.+++.-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 8889999999999999998866554
No 287
>PRK13699 putative methylase; Provisional
Probab=96.62 E-value=0.011 Score=44.90 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
..++..|||.-||+|..+....+... +.+|+|+++...+.+.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHH
Confidence 57899999999999999888877653 899999999999999998865
No 288
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.61 E-value=0.071 Score=38.28 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=76.2
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
++++.++.....+++.+......+.+|+-|||-+-.....- ...+..+++-.|++...-... ++
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~--------------~~ 66 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG--------------GD 66 (162)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC--------------Cc
Confidence 56777888888888888865567789999999875554433 222456899999987643321 12
Q ss_pred eEEEEecCCCCC-CC---CCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGY-ER---EAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~---~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|+.-|..... .+ .++||+|++++++-. ....+..++++++.++++++...
T Consensus 67 -~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~ 127 (162)
T PF10237_consen 67 -EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM 127 (162)
T ss_pred -ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence 34444433211 11 468999999999842 22455566788899998776554
No 289
>KOG1562|consensus
Probab=96.48 E-value=0.012 Score=45.84 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
...+++|-||.|.|.......++- .-.++.-+|++...++..++.+..-.. ....+++.+.-+|..... ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~-gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLAC-GYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhc-ccCCCceEEEeccHHHHHHHhccCCce
Confidence 345689999999999988887773 335889999999999999988765110 023467888888866322 3358899
Q ss_pred EEEECCCccc----------hhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSYFT----------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~ 153 (204)
+|+....-+. ..+.+.+.||++|+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9988754432 34678899999999977
No 290
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.47 E-value=0.039 Score=45.68 Aligned_cols=89 Identities=17% Similarity=0.036 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..++.+|+-+|+|+ |......++..+ ++|+.+|.++...+.|+..- ......+ +. . ...|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G------------~~~~~~~--e~-v--~~aD 259 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEG------------YEVMTME--EA-V--KEGD 259 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcC------------CEEccHH--HH-H--cCCC
Confidence 35789999999998 777777777653 58999999998877776421 1111111 11 1 3479
Q ss_pred EEEECCCccchhHH-HHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFTIPQK-LLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~~~~~-~~~~Lk~gG~l~~~~ 155 (204)
+|+...+....+.. ....+++||+++..-
T Consensus 260 VVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 260 IFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 99988877776665 489999999987643
No 291
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.42 E-value=0.023 Score=45.12 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+++-+|||. |.++..+++..+ ...++++|.++..++.+.... ++ |.... ....+|+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~~--------------~i--~~~~~--~~~g~Dv 203 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGYE--------------VL--DPEKD--PRRDYRA 203 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhcc--------------cc--Chhhc--cCCCCCE
Confidence 4567888899886 888888888763 224777888887766654310 01 10000 1246999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+-..+.....+.+.+.|+++|++++.-
T Consensus 204 vid~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 204 IYDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 9988887777899999999999998643
No 292
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.36 E-value=0.061 Score=43.16 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
++++.+||-.|+|. |.++..+++..+ +++++++.++...+.+++.-.. . ++... . .....+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~Ga~---------~--vi~~~--~--~~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALALGAA---------S--AGGAY--D--TPPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHhCCc---------e--ecccc--c--cCcccce
Confidence 57889999999875 666677777653 5799999999888877664221 1 11100 1 1123588
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+++.............+.|+++|++++.
T Consensus 226 ~~i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 7776655566788899999999999764
No 293
>KOG1253|consensus
Probab=96.31 E-value=0.0059 Score=50.71 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC----CCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG----YEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 124 (204)
.++.+|||.=|++|.-++..++.++.-..+++.|.++..++..+.+++.+.. ...++..+.|+... ......
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhccccccc
Confidence 5667999999999999999999985445899999999999999999987641 23455566665422 122367
Q ss_pred eeEEEECCC--ccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 125 YDIIHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 125 ~D~v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
||+|-.++- ...+++.+.+.++.||+|.+++-..
T Consensus 184 FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 184 FDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred cceEecCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 999987753 3457899999999999999866443
No 294
>KOG0822|consensus
Probab=96.29 E-value=0.031 Score=47.04 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHH-hhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 52 ARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKN-IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..|+-+|+|-|-+.....+. .....+++++|.+|.++.-.+.. ...+ ..+++++..|......+....|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W------~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW------DNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh------cCeeEEEeccccccCCchhhccc
Confidence 46888999999887655443 22356899999999988766553 2222 35899999998876544478999
Q ss_pred EEEC--------CCccchhHHHHHhcCCCcEEEE
Q psy10572 128 IHVS--------PSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~--------~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+++- ...++.++.+.+.|||+|+.|=
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 8652 2234567888899999988754
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.23 E-value=0.077 Score=43.57 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-CCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-GKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~---~~~~~ 122 (204)
+.++.+||..|||. |..+..+++..+ ..++++++.++...+.++..... ..+.....+ ... .....
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~~--------~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLGA--------ETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCCc--------EEEcCCcchHHHHHHHHHcCC
Confidence 57788999999987 888888888863 23699999999988888764211 111111111 110 11223
Q ss_pred CCeeEEEECCCc---------------------cchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSY---------------------FTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~---------------------~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+|+|+..... ....+.+.+.++++|.++..-
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 468988775432 235678889999999998753
No 296
>KOG1099|consensus
Probab=96.19 E-value=0.016 Score=43.66 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC----Cc----eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP----EG----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-- 118 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 118 (204)
..-.+++|+++.+|.++..+.+.+.. +. .+++||+.+-+ ..+.+.-+++|+...
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSAST 103 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhH
Confidence 34468999999999999999887632 11 38999976521 135677788887632
Q ss_pred ------CCCCCCeeEEEECCCc-----cchh------------HHHHHhcCCCcEEEEEecCCC
Q psy10572 119 ------YEREAPYDIIHVSPSY-----FTIP------------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ------~~~~~~~D~v~~~~~~-----~~~~------------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+...+.|+|+++..- |++. .-...+|||||.|+..+.-+.
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 2455789999998543 3321 233478999999998776544
No 297
>KOG2352|consensus
Probab=96.17 E-value=0.012 Score=49.02 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-------CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-------GYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~ 121 (204)
..+.++|-+|-|.|.+...+...+ +...+++++++|.+++.|..++.-.. ..+..+.-.|..+ ....
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 455689999999999999998888 67799999999999999999875411 1234444444431 1123
Q ss_pred CCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 122 EAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...||+++.+-.-.+ .+......|.|.|.+++......
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 467999977532211 34677789999999998776554
No 298
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.044 Score=44.14 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=54.7
Q ss_pred ccccc-CCcccCChHHHHHHHHHHh--------ccCC-CCCEEEEEcCCCcHHHHHHHHHh---CC----CceEEEEEcC
Q psy10572 22 SRQIG-YGADISSPHIHAQMLELLK--------DKIK-PGARILDIGSGSGYLTACLAYMA---GP----EGRVYGVEHV 84 (204)
Q Consensus 22 ~~~~~-~~~~~~~~~~~~~~~~~l~--------~~~~-~~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~vD~~ 84 (204)
..++| .|-+++.+.+.+.+-+.+. .+.. ....++|+|.|.|.++..+++.. .| ..++.-||+|
T Consensus 39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 34444 5678888887665544444 2223 34589999999999998887754 12 4689999999
Q ss_pred HHHHHHHHHHhhh
Q psy10572 85 MELAESSIKNIDK 97 (204)
Q Consensus 85 ~~~~~~a~~~~~~ 97 (204)
+.+...-+++++.
T Consensus 119 ~~L~~~Qk~~L~~ 131 (370)
T COG1565 119 PELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9998888888765
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.15 E-value=0.035 Score=43.43 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+||-+|+|+ |.++..+++..+ ...++++|.++...+.+++.-...- +.... . .+..........+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~~Ga~~~---i~~~~---~-~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALSFGATAL---AEPEV---L-AERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCCcEe---cCchh---h-HHHHHHHhCCCCCCE
Confidence 5788999999886 777777887763 2248899999888887765321100 00000 0 000001112245999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++-........+.+.+.|+++|++++.-
T Consensus 191 vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 9987766777888999999999998744
No 300
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.12 E-value=0.029 Score=45.54 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ..+++++|.++...+.+++.-.. .-+.....+... ......
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAREFGAT--------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCc--------eEEcCCCcCHHHHHHHHhCCC
Confidence 57889999999875 777777888753 22599999999988888643111 000001111110 111223
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+.+...++++|++++.
T Consensus 245 g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 5899987766656778888999999999764
No 301
>KOG2798|consensus
Probab=96.08 E-value=0.045 Score=43.17 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHhccCCC------CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHH
Q psy10572 33 SPHIHAQMLELLKDKIKP------GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~ 89 (204)
.......+++.+..+.++ +.+||--|||.|.++..++..+. .+-|-|.|--|+-
T Consensus 127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLI 186 (369)
T ss_pred hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHH
Confidence 334455566666644333 56899999999999999999763 5566677766653
No 302
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.05 E-value=0.023 Score=44.55 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=50.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEE
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~ 130 (204)
+++|+.||.|.++.-+.... - ..+.++|+++.+++..+.+... .++.+|+...... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~-~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-C-EEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEe
Confidence 68999999999988777653 1 2688899999999888877532 1345555433221 256999999
Q ss_pred CCCcc
Q psy10572 131 SPSYF 135 (204)
Q Consensus 131 ~~~~~ 135 (204)
++++.
T Consensus 69 gpPCq 73 (275)
T cd00315 69 GFPCQ 73 (275)
T ss_pred CCCCh
Confidence 88774
No 303
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.05 E-value=0.096 Score=40.31 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHh---C-CCceEEEEEcCHH-----------------
Q psy10572 30 DISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMA---G-PEGRVYGVEHVME----------------- 86 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~---~-~~~~v~~vD~~~~----------------- 86 (204)
.+........+...+...+ .-...|+|+||-.|..++.+...+ + +.-++++.|.-..
T Consensus 52 tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 52 TMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp -SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 3444444555555444333 455699999999998776654432 1 2346888873221
Q ss_pred ---------HHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCCeeEEEECCCccc----hhHHHHHhcCCCcEE
Q psy10572 87 ---------LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAPYDIIHVSPSYFT----IPQKLLDQLVPGGRM 151 (204)
Q Consensus 87 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l 151 (204)
..+..+.++...+ +..+++.++.+.+.+..+ +..++-++.++..+.. .++.++..|.|||++
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~g---l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYG---LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTT---TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred hhcccccccCHHHHHHHHHHcC---CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 2333444443322 234689999998764433 3356788888877654 557888999999999
Q ss_pred EEEecCC
Q psy10572 152 VMPVGEP 158 (204)
Q Consensus 152 ~~~~~~~ 158 (204)
++.-+..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9976655
No 304
>KOG1227|consensus
Probab=96.01 E-value=0.0064 Score=47.46 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..|.|+-+|-|+++. .+.+.. ...|+++|.+|..++..++++..+. ...+..+..+|.... .+....|.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~~-~~~~~Adr 265 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRNP-KPRLRADR 265 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhcccccc-Cccccchh
Confidence 456899999999999998 555543 3489999999999999999988754 234555666774433 34567888
Q ss_pred EEECCCc--cchhHHHHHhcCCCcE
Q psy10572 128 IHVSPSY--FTIPQKLLDQLVPGGR 150 (204)
Q Consensus 128 v~~~~~~--~~~~~~~~~~Lk~gG~ 150 (204)
|...... ..---.+.++|||.|-
T Consensus 266 VnLGLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 266 VNLGLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred eeeccccccccchHHHHHHhhhcCC
Confidence 8765322 2222456677777654
No 305
>KOG2793|consensus
Probab=96.01 E-value=0.096 Score=40.23 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC-ccceEEEEecCCCCC---CCCCC-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-QGRVQFVVWNGKHGY---EREAP- 124 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~---~~~~~- 124 (204)
...+|||+|+|+|..++.++...+ +++.-.|.. ..++....+...+...... ...+.+...++.... .-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 456899999999988888887653 477776743 3344433332221100000 113444444433211 11123
Q ss_pred eeEEEECCCc------cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSY------FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~------~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+|+...+. ..+...+...|..++.+++.+.-..
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 8988876555 3466788888889997777665443
No 306
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.97 E-value=0.12 Score=41.11 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-----CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-----GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~ 121 (204)
+.++.+||..|+|. |..+..+++..+ .++++++.++...+.++..-. . .++...-.. ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~---------~--~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGA---------D--EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCC---------C--EEEcCCCcCHHHHHHHhc
Confidence 56778999888774 778888888753 579999999988877754211 1 111110000 0123
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++.........+.+.+.|+++|.++...
T Consensus 230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence 3569999877666667888999999999998754
No 307
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.84 E-value=0.07 Score=38.53 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=63.1
Q ss_pred EEcCCCcHHHHHHHHHhCCCceEEEEEcCHH--HHHH---HHHHhhhcCccccCccceEEEE-ecCCCC--CC--CCCCe
Q psy10572 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVME--LAES---SIKNIDKGNSELLDQGRVQFVV-WNGKHG--YE--REAPY 125 (204)
Q Consensus 56 diG~G~G~~~~~l~~~~~~~~~v~~vD~~~~--~~~~---a~~~~~~~~~~~~~~~~~~~~~-~d~~~~--~~--~~~~~ 125 (204)
-+|=|.=.++..+++..+....+++.-.+.. ..+. +..++.. +...++.+.. .|+... .+ ....|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcC
Confidence 3677888889999998754556766644333 3222 2233322 1223444433 343322 12 45789
Q ss_pred eEEEECCCccc-------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 126 DIIHVSPSYFT-------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 126 D~v~~~~~~~~-------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|.|+.|.|... +++.+..+|+++|.+.++...+++.
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 99999977643 3367779999999999999888764
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.72 E-value=0.035 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ ..+|+++|.++...+.+++.-... -+.....+..+ .... +
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~~Ga~~--------~i~~~~~~~~~~i~~~~~-~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARELGATA--------TVNAGDPNAVEQVRELTG-G 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHHcCCce--------EeCCCchhHHHHHHHHhC-C
Confidence 57788999999875 777777787753 226999999999888886532110 00000111110 0112 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+.+.+.|+++|.+++.
T Consensus 259 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 259 GVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 6899998776666788889999999998864
No 309
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.53 E-value=0.076 Score=42.59 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC--CCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG--KHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ ++ +++++.++...+.+++.-... -+.....+. ........
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga~~--------~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGADF--------VINSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCE--------EEcCCcchHHHHHHHhCCC
Confidence 56788999998875 677777777753 45 999999988887775432110 000000110 00111224
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-............+.|+++|++++.
T Consensus 231 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999997777666667888999999999864
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.51 E-value=0.11 Score=44.27 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-----------
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH----------- 117 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----------- 117 (204)
++.+++-+|+|. |..+..+++..+ +.++++|.++..++.++.. .. +++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~l-Ga-----------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSM-GA-----------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc-CC-----------eEEeccccccccccccceee
Confidence 567999999997 788888888764 4799999999988877652 11 111111100
Q ss_pred ------------CCCCCCCeeEEEECC-----Cccc-hhHHHHHhcCCCcEEE
Q psy10572 118 ------------GYEREAPYDIIHVSP-----SYFT-IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 118 ------------~~~~~~~~D~v~~~~-----~~~~-~~~~~~~~Lk~gG~l~ 152 (204)
....-..+|+||... ..+. +.++..+.+|||+.++
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 000124699998776 2222 4588899999998876
No 311
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.41 E-value=0.03 Score=36.99 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
+....+|+|||+|.+.-.|....- .=+|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY---PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC---Ccccccc
Confidence 456899999999999888887543 5678885
No 312
>PLN02740 Alcohol dehydrogenase-like
Probab=95.30 E-value=0.053 Score=44.41 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~---~ 118 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-. . .++... ..+ .
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~~Ga---------~--~~i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKEMGI---------T--DFINPKDSDKPVHERIRE 263 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHHcCC---------c--EEEecccccchHHHHHHH
Confidence 67889999999886 777788888763 2269999999998888865311 1 111111 110 1
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
... +.+|+|+-..+...........++++ |++++.
T Consensus 264 ~~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 264 MTG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 112 26999998888777888888999996 887663
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.29 E-value=0.087 Score=40.31 Aligned_cols=99 Identities=26% Similarity=0.290 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
.++.+||..|+|+ |..+..+++..+ .++++++.++...+.++...... -+.....+.... ......+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHHhcCCCC
Confidence 6788999999996 666777777653 68999999988777765431110 000000000000 1123569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...........+.+.|+++|.++..-..
T Consensus 203 d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 99998766546778889999999999875433
No 314
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.20 E-value=0.078 Score=42.72 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cC--CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NG--KHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~--~~~~~~ 121 (204)
..++.+||-.|+|+ |.++..+++..+ ...+++++.++...+.++..-.. .++.. +. ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 225 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKSLGAM-----------QTFNSREMSAPQIQSVLR 225 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCc-----------eEecCcccCHHHHHHHhc
Confidence 46788999999876 777777888763 22478899888887777542111 11111 10 001112
Q ss_pred CCCee-EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYD-IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D-~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+| +++-..+....+....+.|+++|.+++.
T Consensus 226 ~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 226 ELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 24577 6666666566778899999999998874
No 315
>PTZ00357 methyltransferase; Provisional
Probab=95.19 E-value=0.19 Score=44.08 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=61.7
Q ss_pred EEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCcccc-----CccceEEEEecCCCCCCC---
Q psy10572 53 RILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELL-----DQGRVQFVVWNGKHGYER--- 121 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~--- 121 (204)
.|+-+|+|-|-+.....+.. +-..++++||.++..+.....+..... .|- ....++++..|......+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCccccccccccc
Confidence 58999999998876555543 335689999999765444444432211 111 124689999998754322
Q ss_pred --------CCCeeEEEE--------CCCccchhHHHHHhcCC----CcE
Q psy10572 122 --------EAPYDIIHV--------SPSYFTIPQKLLDQLVP----GGR 150 (204)
Q Consensus 122 --------~~~~D~v~~--------~~~~~~~~~~~~~~Lk~----gG~ 150 (204)
-+++|+|++ |...++.++.+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 136999986 22234466777788876 776
No 316
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.13 E-value=0.43 Score=38.33 Aligned_cols=103 Identities=19% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCC--CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHG--YE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~--~~ 120 (204)
.+++.+|.-+|||. |..++.-++.. ....++++|+++..++.|++--.. +++.. |..+. ..
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGAT-----------~~vn~~~~~~vv~~i~~~ 250 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGAT-----------HFVNPKEVDDVVEAIVEL 250 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCCc-----------eeecchhhhhHHHHHHHh
Confidence 68899999999996 77777777776 456999999999999999875433 22221 11110 01
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
.....|.++-........++.+..+.++|..++.=......+
T Consensus 251 T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~ 292 (366)
T COG1062 251 TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQE 292 (366)
T ss_pred cCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCce
Confidence 123678888777777888999999999999988665554333
No 317
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.08 E-value=0.15 Score=41.56 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ec--CCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WN--GKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ +++++++.++.....+.+.+.. . .++. .+ ...... +
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~~Ga--------~--~vi~~~~~~~~~~~~--~ 246 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINRLGA--------D--SFLVSTDPEKMKAAI--G 246 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHhCCC--------c--EEEcCCCHHHHHhhc--C
Confidence 45788899899986 778888888764 4788888776543322221111 0 1111 00 000111 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+...+.|+++|.++..
T Consensus 247 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 247 TMDYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 4899987766555678889999999999864
No 318
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.06 E-value=0.31 Score=39.39 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~ 120 (204)
+.++.+|+-.|+|. |..+..+++..+ +++++++.++..++.+++.-... -+..... +.. ....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~--------~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGFGADL--------TLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCce--------EecCccccHHHHHHHHHhhc
Confidence 57789999999976 778888888763 48999999999888876531110 0000010 110 0011
Q ss_pred CCCCee----EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYD----IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D----~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+| +|+-..+.....+.+.+.|+++|++++.
T Consensus 234 ~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred ccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 112344 6776666666778889999999999764
No 319
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.87 E-value=0.61 Score=37.68 Aligned_cols=88 Identities=17% Similarity=-0.019 Sum_probs=41.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---------------CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc--eEEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---------------GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR--VQFV 111 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 111 (204)
....+|+|+||.+|.-+..+.... .+..+++--|+-..-....-+.+..........++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 444699999999998776665431 12247777785443222222222211000000122 2234
Q ss_pred EecCCCCCCCCCCeeEEEECCCccc
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
.+.+....+|.++.|++++...+||
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB
T ss_pred CchhhhccCCCCceEEEEEechhhh
Confidence 5666677788899999998766655
No 320
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.85 E-value=1.2 Score=33.48 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
++++..++. =.....++++.|+.|. +++..+.+- .+++++.|-.++..+...++.+...+ ..+.++|+.+
T Consensus 30 aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg 103 (218)
T PF07279_consen 30 AEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVG 103 (218)
T ss_pred HHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEec
Confidence 345555552 2445688888666432 333333333 45799999888887766666665422 1244688888
Q ss_pred cCCC-CCCCCCCeeEEEECCCccchhHHHHHhcC--CCcEEEEEecCC
Q psy10572 114 NGKH-GYEREAPYDIIHVSPSYFTIPQKLLDQLV--PGGRMVMPVGEP 158 (204)
Q Consensus 114 d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk--~gG~l~~~~~~~ 158 (204)
+..+ ....-...|.++++.-..+...++++.++ |.|-+++.....
T Consensus 104 ~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 104 EAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAF 151 (218)
T ss_pred CCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccc
Confidence 7442 22233569999998888777766666654 467776655443
No 321
>PLN02827 Alcohol dehydrogenase-like
Probab=94.84 E-value=0.091 Score=43.05 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-----cCCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-----NGKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~---~ 118 (204)
+.++.+||-.|+|. |.++..+++..+ ...++++|.++...+.++..-. . .++.. +... .
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~lGa---------~--~~i~~~~~~~~~~~~v~~ 258 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKTFGV---------T--DFINPNDLSEPIQQVIKR 258 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCC---------c--EEEcccccchHHHHHHHH
Confidence 57889999999876 777777888763 2258899988888877754311 1 11111 1100 0
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVM 153 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~ 153 (204)
... +.+|+|+-..+....+....+.++++ |++++
T Consensus 259 ~~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 259 MTG-GGADYSFECVGDTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEE
Confidence 111 26999998777666778889999998 99976
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.84 E-value=0.22 Score=33.27 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCC
Q psy10572 59 SGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPS 133 (204)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~ 133 (204)
||.|.++..+++.+.... .++.+|.++..++.++.. .+.++.+|..... ..-...+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 566678877777664444 799999999998887653 3678899976432 12256888877665
Q ss_pred ccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 134 YFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 134 ~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... ......+.+.|...+++...+..
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 543 22445566778888888665543
No 323
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.81 E-value=0.11 Score=40.05 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCC-------CceEEEEEcCHHHHHHHHHHhhh
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
..+|+|+|+|+|.++..+++.+.. ..+++-||.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999887632 25899999999999888888755
No 324
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.67 E-value=0.23 Score=43.89 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh------CC-----CceEEEEEcCHHHHHHHH--------------HHhhhcCcccc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVMELAESSI--------------KNIDKGNSELL 103 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~vD~~~~~~~~a~--------------~~~~~~~~~~~ 103 (204)
++.-+|+|+|-|+|.-.....+.. .+ .-+++++|..|-..+... +....+.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999999766665443 12 248999997653222221 21111110000
Q ss_pred C-------cc--ceEEEEecCCCCCCC-CCCeeEEEECCCcc---------chhHHHHHhcCCCcEEEEEe
Q psy10572 104 D-------QG--RVQFVVWNGKHGYER-EAPYDIIHVSPSYF---------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 104 ~-------~~--~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~---------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+ .. .+++..+|+.+.... ...+|+|+.++-.+ +++..+.++++|||.+.--+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 11 344566776543221 14699999986443 36789999999999997543
No 325
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=94.65 E-value=0.58 Score=38.78 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCC---
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKH--- 117 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~--- 117 (204)
++++.+|+-+| +|. |.++..+++..+. ..+++++|.++..++.+++....... .......++.. +...
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~--~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA--SRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc--ccCceEEEECCCccccHHHHHH
Confidence 56778999887 564 8888888887531 23799999999999988775221000 00001111211 1110
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.......+|+++...+.........+.++++|.+++..
T Consensus 251 ~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 ELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 01122469999887666677788999999998776643
No 326
>PRK11524 putative methyltransferase; Provisional
Probab=94.65 E-value=0.047 Score=42.97 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=38.8
Q ss_pred cceEEEEecCCCC--CCCCCCeeEEEECCCcc----------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 106 GRVQFVVWNGKHG--YEREAPYDIIHVSPSYF----------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 106 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~----------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+.+++++|..+. ..+.+++|+|++++++. .++..+.++|||||.+++.+..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4567888887753 24457899999998863 1457888999999999986543
No 327
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=94.63 E-value=0.39 Score=37.16 Aligned_cols=93 Identities=25% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++.-.. ..+ .... ........+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~--~~~~~~~~~ 160 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEALGPA--------DPV--AADT--ADEIGGRGA 160 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHcCCC--------ccc--cccc--hhhhcCCCC
Confidence 57788999888875 667777777753 35 99999888887766653201 011 0000 011123469
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.............+.|+++|.++..
T Consensus 161 d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 161 DVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 99987656556778889999999999764
No 328
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=94.62 E-value=0.18 Score=41.00 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEec--C---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWN--G---KHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d--~---~~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..-.. .+ .....+ . .....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKEFGAT---------DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCCC---------cEeccccccchHHHHHHHHh
Confidence 57888999998875 777777788763 22799999998888877542111 11 000000 0 00111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
. ..+|+|+-..........+.+.++++ |.++..-
T Consensus 252 ~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 G-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEc
Confidence 2 46999997766566778889999885 8887643
No 329
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.61 E-value=0.41 Score=39.70 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+++|+-+|+|. |......++.+ +++|+++|.++.....+... ...+... .+. . ...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~------------G~~v~~l--eea-l--~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD------------GFRVMTM--EEA-A--KIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc------------CCEeCCH--HHH-H--hcCCE
Confidence 5788999999997 77777777765 35899999998754444321 1222111 111 1 34799
Q ss_pred EEECCCccchhH-HHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTIPQ-KLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~~~-~~~~~Lk~gG~l~~~~~ 156 (204)
|+...+..+++. .....+|+|++++..-.
T Consensus 254 VItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 254 FITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 988877777664 58889999998876443
No 330
>KOG2078|consensus
Probab=94.59 E-value=0.039 Score=45.25 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+++..|.|+.||.|-+++.+++. .|.|++.|.++.+++..+.++..+. +...++++...|+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHH
Confidence 589999999999999999998885 4799999999999999999988765 23345777766654
No 331
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.51 E-value=0.7 Score=38.15 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...++.+|.++..++.+++.- .. .+... +... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~~G---------a~--~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARSFG---------CE--TVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHcC---------Ce--EEecCCcccHHHHHHHHc
Confidence 57788888888876 777777887763 224666788888888886631 11 11111 1110 011
Q ss_pred CCCCeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+++-..+.. ..++.+.+.++++|.+++.=
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 224589998877654 36788999999999998743
No 332
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.39 E-value=0.22 Score=40.18 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
++++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-. . .++.. +... ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~g~---------~--~~v~~~~~~~~~~i~~~~ 231 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKEYGA---------T--DIVDYKNGDVVEQILKLT 231 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCC---------c--eEecCCCCCHHHHHHHHh
Confidence 57788999888875 777777787763 2368999988887777764211 1 11111 1100 112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+++...........+.+.|+++|+++..
T Consensus 232 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 232 GGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 2346999987766556778999999999998753
No 333
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.36 E-value=0.29 Score=39.59 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~---~~~~ 121 (204)
+.++.+||-.|+ | .|.++..+++..+ +++++++.++...+.+++.+... .-+..... +... ....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa~-------~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGFD-------EAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCCC-------EEEECCCcccHHHHHHHHCC
Confidence 578899999998 4 4888888888764 58999998888777765332110 00111001 1110 1112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++-.... .......+.|+++|++++.
T Consensus 227 -~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 227 -EGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred -CCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence 369999876554 4678889999999998864
No 334
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.35 E-value=0.37 Score=39.08 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+|+-.|+|. |.++..+++..+ +++++++.++.....+.+.+.. .. .+...+..........+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~Ga--------~~-~i~~~~~~~~~~~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHLGA--------DD-YLVSSDAAEMQEAADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhcCC--------cE-EecCCChHHHHHhcCCCcE
Confidence 5778888888875 777777888753 4788888777655544332211 10 0111110000000125899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
++-..+.......+.+.|+++|+++..
T Consensus 248 vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 248 IIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEECCCchHHHHHHHHHhccCCEEEEE
Confidence 987766556778889999999998774
No 335
>KOG1098|consensus
Probab=94.21 E-value=0.054 Score=46.48 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=35.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHH
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~ 86 (204)
++.++..|||+||.+|.+....++.++.++.|+|+|+.|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4688999999999999999999999977789999998663
No 336
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.21 E-value=0.23 Score=40.48 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE--ecCCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV--WNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~~~---~~~~ 121 (204)
++++.+||-.|+|. |.++..+++..+ ..+++++|.++...+.+++.-... -+.... .+... ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~~Ga~~--------~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKKLGATD--------CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCCe--------EEcccccchhHHHHHHHHhC
Confidence 57888999999886 777788888763 227999999999888886532110 010000 00000 0111
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
+.+|+++-............+.++++ |++++.-
T Consensus 254 -~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 -GGVDYSFECIGNVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred -CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence 35899988777666778888999886 9887643
No 337
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.16 E-value=0.82 Score=37.61 Aligned_cols=86 Identities=14% Similarity=-0.015 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHH--------h------CCCceEEEEEcCHHHHHHHHHHhhhcCc-----cc----cCccc
Q psy10572 51 GARILDIGSGSGYLTACLAYM--------A------GPEGRVYGVEHVMELAESSIKNIDKGNS-----EL----LDQGR 107 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~--------~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~----~~~~~ 107 (204)
...|+|+|||+|..+..+... . .|..+++.-|+-..-....-+.+..... +. .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999776554332 1 1245666667443322222122211000 00 00011
Q ss_pred --eEEEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 108 --VQFVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 108 --~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
+.-+.+.+....+|.++.+++++...++|
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHW 174 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHW 174 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecccee
Confidence 11122444456677788888887766654
No 338
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.87 E-value=1.5 Score=35.73 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-----cCCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-----NGKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~---~ 118 (204)
++++.+||-.|+|. |.++..+++..+ ...++++|.++...+.+++.- . . .++.. +... .
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~lG-a--------~--~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKKFG-A--------T--DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcC-C--------C--EEEcccccchHHHHHHHH
Confidence 57889999999875 777777788763 226999999999888775421 1 1 11111 0100 0
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
... +.+|+|+-..........+.+.|+++ |+++..
T Consensus 252 ~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 252 MTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred HhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 111 36999988766556778889999987 888764
No 339
>KOG2360|consensus
Probab=93.86 E-value=0.24 Score=40.25 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
...........+. ..++..|+|.+|-+|.-+..++....+.++++|+|.+....+..++.+...+ ...+....
T Consensus 198 qd~asclpA~ll~--p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~ 270 (413)
T KOG2360|consen 198 QDKASCLPAHLLD--PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVE 270 (413)
T ss_pred echhhcchhhhcC--CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCcccccc
Confidence 3333334444454 5677899999999999999998887667899999999999888888776633 45666778
Q ss_pred ecCCCCCCCC--CCeeEEEECCCc
Q psy10572 113 WNGKHGYERE--APYDIIHVSPSY 134 (204)
Q Consensus 113 ~d~~~~~~~~--~~~D~v~~~~~~ 134 (204)
+|+.....+. ...-.+++++++
T Consensus 271 ~df~~t~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 271 GDFLNTATPEKFRDVTYILVDPSC 294 (413)
T ss_pred ccccCCCCcccccceeEEEeCCCC
Confidence 8866532111 335556666554
No 340
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.86 E-value=0.08 Score=44.43 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHH----HHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME----LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
..|+|+.+|.|.++..|... .|..+.+.+. .+...-. ...-=+..|+.+.. .-..+||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd------------RGLIG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD------------RGLIGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh------------cccchhccchhhccCCCCcchh
Confidence 48999999999999988764 2444433332 1111111 11111223333322 1137899
Q ss_pred EEEECCCccc---------hhHHHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFT---------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|.++..+.. ++-++-+.|+|+|.+++.-
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 9988876643 4567779999999999843
No 341
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.80 E-value=0.4 Score=38.39 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||..|+|. |..+..+++..+ ...+++++.++...+.++..-.. .-+.....+.. ....+..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~~g~~--------~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKEAGAT--------DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHhCCc--------EEEcCCcchHHHHHHHHcCCC
Confidence 56788888877653 666777777653 23788888777776666543110 00111111110 0112235
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++.............+.|+++|+++..
T Consensus 236 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999987655445778889999999998754
No 342
>PLN02494 adenosylhomocysteinase
Probab=93.80 E-value=0.45 Score=40.07 Aligned_cols=89 Identities=17% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+++|+-+|+|. |......++.++ ++|+++|.++.....+... ...+. +..+ .. ...|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~------------G~~vv--~leE-al--~~ADV 312 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME------------GYQVL--TLED-VV--SEADI 312 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc------------CCeec--cHHH-HH--hhCCE
Confidence 5688999999997 776666666553 5899999988654444321 11121 1111 11 34799
Q ss_pred EEECCCccch-hHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTI-PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~-~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+......++ .......+|+|++++-.-.
T Consensus 313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 9998777776 4889999999999987544
No 343
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.76 E-value=0.39 Score=38.41 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCCCCe
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYEREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~ 125 (204)
++.+||..|+|. |..+..+++..+ ...+++++.++...+.+++.-. . .++..+ ..........+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~~g~---------~--~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARAMGA---------D--ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHcCC---------C--EEEcCCchhhhhhhccCCCc
Confidence 778898888775 667777777653 1268999988887776544211 0 111110 11111122459
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.........+.+.+.|+++|+++..
T Consensus 233 d~vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 99998766555678889999999999864
No 344
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=93.70 E-value=0.34 Score=38.77 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ .+++.++.++...+.+++.- . . .++.. +.........
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~g-~--------~--~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKLG-A--------H--HYIDTSKEDVAEALQELG 227 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcC-C--------c--EEecCCCccHHHHHHhcC
Confidence 57788999999775 777777777753 47999998888777775421 1 0 11111 1100000113
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+++...+.........+.|+++|.++..-
T Consensus 228 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 228 GAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 48999876544567788899999999988643
No 345
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.60 E-value=0.91 Score=35.92 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.+++ +.. ..+... .. ......+|
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~----~~-~~~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-LGV--------ETVLPD----EA-ESEGGGFD 216 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------cEEeCc----cc-cccCCCCC
Confidence 56788999888764 555666666653 478999988888887765 211 111101 01 12335699
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+++...+.......+.+.|+++|.++.
T Consensus 217 ~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 998876555567888899999999987
No 346
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=93.55 E-value=0.44 Score=39.03 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHH-HHHHHHHhhhcCccccCccceEEEE-ec--CCCCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMEL-AESSIKNIDKGNSELLDQGRVQFVV-WN--GKHGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~ 123 (204)
.++.+|+-.|+|. |..+..+++..+ +++++++.++.. .+.++.. . .. .++. .+ ...... .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~l-G--------a~--~~i~~~~~~~v~~~~--~ 241 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDRL-G--------AD--SFLVTTDSQKMKEAV--G 241 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHhC-C--------Cc--EEEcCcCHHHHHHhh--C
Confidence 4788999899886 777788888764 478898876543 4444321 1 11 1111 00 000011 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++-..........+.+.++++|.++..
T Consensus 242 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 242 TMDFIIDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 4899988766666778889999999999864
No 347
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.55 E-value=0.48 Score=37.58 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+.+++-+|+|. |......++.. +++++.+|.++...+.++.. ..++...+-..... ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~------------G~~~~~~~~l~~~l--~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEM------------GLSPFHLSELAEEV--GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc------------CCeeecHHHHHHHh--CCCCEE
Confidence 578999999986 55555555554 35999999998765554321 11222111011111 358999
Q ss_pred EECCCccchhHHHHHhcCCCcEEEE
Q psy10572 129 HVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+...+..-+.+.....+++++.++-
T Consensus 215 I~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 215 FNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EECCChhhhhHHHHHcCCCCcEEEE
Confidence 9876655556778888999877663
No 348
>KOG0023|consensus
Probab=93.49 E-value=0.26 Score=39.20 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE--EecCCCCCC--CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--VWNGKHGYE--RE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~--~~ 122 (204)
+.|+.+|--+|.|- |.++..+++..+ .+|+++|.+..--+.+-+.+.+ +.+-.. ..|..+... -+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHHHhhc
Confidence 46888888888875 999999999875 5999999888666666655433 211111 111111111 11
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.-.|.+... ..+.++.+..+||++|.+++.-...
T Consensus 249 g~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 249 GGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred Ccceeeeec--cccchHHHHHHhhcCCEEEEEeCcC
Confidence 223333322 5667789999999999998854433
No 349
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.48 E-value=0.41 Score=39.89 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|+-+|+|. |......++..+ ++|+.+|.++.....+... ...+. +..+ .. ...|+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~------------G~~v~--~l~e-al--~~aDV 270 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD------------GFRVM--TMEE-AA--ELGDI 270 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc------------CCEec--CHHH-HH--hCCCE
Confidence 4788999999997 666666666553 5899999998765444321 11221 1111 11 25899
Q ss_pred EEECCCccchhH-HHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQ-KLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~-~~~~~Lk~gG~l~~~~ 155 (204)
|+...+..+.+. .....+|+|++++..-
T Consensus 271 VI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 271 FVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 998877766664 7888999999887643
No 350
>KOG0022|consensus
Probab=93.46 E-value=1.4 Score=35.20 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCC----CC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKH----GY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~----~~-- 119 (204)
+.++.++.-+|+|. |.....-++.. ..++++|+|+++.-.+.|++--..+ ++.. |... ..
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~fGaTe-----------~iNp~d~~~~i~evi~E 257 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEFGATE-----------FINPKDLKKPIQEVIIE 257 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhcCcce-----------ecChhhccccHHHHHHH
Confidence 68899999999997 77777777776 4569999999999999998754331 2111 1111 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
..++.+|.-+-..+..+...++....++| |.-++.=
T Consensus 258 mTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 258 MTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred HhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEE
Confidence 12367898888888888888888888888 7776643
No 351
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.42 E-value=0.87 Score=35.38 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC----CCceEEEEEcCHHHH
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVMELA 88 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~vD~~~~~~ 88 (204)
+.++..++|+|||.|.++.+++.... +...++.||......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 57788999999999999999999873 235889999866544
No 352
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.33 E-value=0.85 Score=36.26 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.++..- . ..+ .....+.... ..+.+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~g-~--------~~~~~~~~~~~~~~--~~~~~ 226 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKLG-A--------DEVVDSGAELDEQA--AAGGA 226 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhC-C--------cEEeccCCcchHHh--ccCCC
Confidence 57778999998874 666677777653 58999998888777764321 1 000 0000000001 12469
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++...........+.+.|+++|.++...
T Consensus 227 d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 999876555567788899999999998754
No 353
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.23 E-value=2.5 Score=33.60 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEe-cCCCC--CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVW-NGKHG--YER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~~~--~~~ 121 (204)
+.++.+||-.|. | .|..+..+++..+ +++++++.++...+.++..- . ..+ ..... +.... ...
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~lG-a--------~~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKLG-F--------DVAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC-C--------CEEEeccccccHHHHHHHhC
Confidence 578889998884 4 4778888888753 58999998888777775421 1 111 00010 11100 011
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++-..+. .......+.|+++|+++..
T Consensus 205 ~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 205 PDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence 2469999876554 3558889999999999863
No 354
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.05 E-value=0.44 Score=38.77 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GK---HG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~---~~ 118 (204)
+.++.+||-.|+|. |.++..+++..+ ..++++++.++...+.++..- . . .++... .. ..
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~~G-a--------~--~~i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKKFG-V--------T--EFVNPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcC-C--------c--eEEcccccchhHHHHHHH
Confidence 57889999999875 777777777753 227999999998888875421 1 1 111110 00 01
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
.. .+.+|+++-..+.......+...++++ |++++.
T Consensus 253 ~~-~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 253 MT-GGGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred Hh-CCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 11 236899987766666778888999996 888764
No 355
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=93.00 E-value=1.9 Score=34.22 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-.|+|. |..+..+++..+ .+++.++.++...+.+++. .. . .++..+ .. ....+|
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~-g~--------~--~~~~~~--~~--~~~~vD 227 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELAREL-GA--------D--WAGDSD--DL--PPEPLD 227 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHHh-CC--------c--EEeccC--cc--CCCccc
Confidence 56778888888775 666666667653 5889998888766666431 11 0 111111 11 224589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+++.........+.+.+.|+++|.++..
T Consensus 228 ~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 228 AAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 8887655556788999999999999863
No 356
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.76 E-value=0.066 Score=35.57 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=24.9
Q ss_pred CeeEEEECCCccc------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFT------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.||+|+|....-+ +++.+...|+|||.+++.--++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4899998877644 4578999999999999965444
No 357
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=92.70 E-value=2.1 Score=34.57 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecC------CCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNG------KHGY 119 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~~~ 119 (204)
.++.+||-.|+|. |..+..+++..+ . ++++++.++...+.+++. . ...+ .....+. ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g--------~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAREF-G--------ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc-C--------CCeEEcCcccccHHHHHHHHHH
Confidence 4778888888765 667777777753 4 799998888776666432 1 1110 0000000 0011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++.............+.|+++|+++..
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence 22346999987765555678889999999999864
No 358
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.68 E-value=0.65 Score=37.39 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~ 122 (204)
+.++.+||-.|+|. |..+..+++..+ . .+++++.++...+.+++.-.. .-+.....+... .....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G--~~~v~~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG--ASKIIVSEPSEARRELAEELGAT--------IVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC--------EEECCCccCHHHHHHHHhCC
Confidence 56788888888764 666667777653 4 788998888887777542111 000001111110 11222
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++-..+.......+.+.|+++|.++..
T Consensus 240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 35999998776556778889999999998764
No 359
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.67 E-value=1.8 Score=34.45 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC----CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH----GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~ 121 (204)
+.++.+||..|+|. |..+..+++..+ .+ +++++.++...+.+++.. . . .++..+-.. ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKLG-A--------T--ETVDPSREDPEAQKEDN 223 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhC-C--------e--EEecCCCCCHHHHHHhc
Confidence 56788999998763 666666777653 34 888888888777764321 1 1 111111010 0112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++...........+.+.|+++|+++..-
T Consensus 224 ~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 3569999987655567788899999999997643
No 360
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.59 E-value=0.68 Score=37.25 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 122 (204)
++++.+||-.|... |.+++.+++..+ +.++++-.++.-.+.+++...+ .-+.+...|+.+. ....
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVRELTGG 209 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHHcCC
Confidence 67899999888443 778888899874 2566666666655555544322 1233333333221 1222
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+|+|+..-.-. ........|+++|+++..-...
T Consensus 210 ~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 210 KGVDVVLDTVGGD-TFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCceEEEECCCHH-HHHHHHHHhccCCEEEEEecCC
Confidence 4699997655544 4456889999999998865544
No 361
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.46 E-value=1 Score=35.71 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~~ 121 (204)
+.++.+||-.|+ | .|..+..+++..+ +++++++.++...+.++..- . ..+ .....+... ....
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~~G-a--------~~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKELG-F--------DAVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC-C--------CEEEeCCCccHHHHHHHHCC
Confidence 577889988874 3 3777888888764 58999998888777776521 1 111 000111110 1112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+-...- .......+.|+++|+++..
T Consensus 210 -~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 -DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 469999865554 5668889999999998763
No 362
>KOG2651|consensus
Probab=92.39 E-value=0.65 Score=37.89 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.+-..|+|+|.|.|+++..++-..+ -.|.+||-|....+.|+..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHH
Confidence 4557999999999999999987653 4899999887666665443
No 363
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.38 E-value=0.45 Score=38.04 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||..|+|. |..+..+++..+ .+++++..++...+.++..... .-+.....+.. ....+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g~~--------~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELGAD--------DTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhCCC--------EEecCcccCHHHHHHHHhCCC
Confidence 57888999998764 677777777753 5888888788777766442111 00111111110 0112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++...........+.+.|+++|.++..
T Consensus 227 ~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 227 GADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 5999988755556678889999999998864
No 364
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.35 E-value=1.1 Score=35.05 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v 128 (204)
++.|+-+| -.-..++.++-.. ..-++..+|+++..++...+..... +..|++.+.-|+....++ ...||+.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~-----g~~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL-----GYNNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh-----CccchhheeehhcccChHHHHhhCCee
Confidence 45688888 3333444443332 2238899999999999998887763 356789999998776544 3689999
Q ss_pred EECCCccc-----hhHHHHHhcCCC---cEEEEEecCCC
Q psy10572 129 HVSPSYFT-----IPQKLLDQLVPG---GRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~-----~~~~~~~~Lk~g---G~l~~~~~~~~ 159 (204)
+.+++..- ++.+-...||.- |++.++.....
T Consensus 226 iTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 226 ITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred ecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 98877632 223334556655 77777665443
No 365
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.28 E-value=0.6 Score=39.43 Aligned_cols=90 Identities=16% Similarity=-0.045 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+++|+-+|+|. |......++.+ +++|+.+|.++.....+... .+.+. +..+. . ...|+
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~------------G~~~~--~leel-l--~~ADI 312 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME------------GYQVV--TLEDV-V--ETADI 312 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc------------Cceec--cHHHH-H--hcCCE
Confidence 4678999999997 65555555544 35899999887755443221 12222 11111 1 35899
Q ss_pred EEECCCccchh-HHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFTIP-QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~~~-~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+......+++ ......+|||++|+-.-..
T Consensus 313 VI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 99887776766 5899999999999775433
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.23 E-value=0.83 Score=37.14 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-. -.++..+ .. ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~~g~-----------~~~i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKELGA-----------THVINPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCC-----------cEEecCCCcCHHHHHHHHh
Confidence 56788999888875 777777788763 2269999999887776654211 1111111 00 0011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++-..+.......+.+.|+++|.++..-
T Consensus 252 -~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 -GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 3469999887666667889999999999988643
No 367
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.22 E-value=1.1 Score=35.93 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecC------CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNG------KHG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~~ 118 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++. .. ..+ .....+. ...
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g~--------~~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL-GA--------THTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc-CC--------cEEeccccccchhHHHHHHH
Confidence 57888988887765 667777777753 34 88888787776666442 11 110 0011110 011
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
......+|+|+.............+.|+++|+++..-
T Consensus 229 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 1223459999887665557788899999999987643
No 368
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.20 E-value=1.1 Score=35.93 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCC--CEEEEEcC-C-CcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC--
Q psy10572 48 IKPG--ARILDIGS-G-SGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH-- 117 (204)
Q Consensus 48 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~-- 117 (204)
+.++ .+||-.|+ | .|..+..+++..+ + ++++++.++...+.+++.+.. .. ++.. +..+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~lGa--------~~--vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSELGF--------DA--AINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhcCC--------cE--EEECCCCCHHHHH
Confidence 4444 78988886 3 4778888888753 4 799999888877776653221 11 1111 1110
Q ss_pred -CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 -GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 -~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.... ..+|+|+...... ......+.|+++|+++..
T Consensus 218 ~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 218 RELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIILC 253 (345)
T ss_pred HHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence 1112 4699998765544 458889999999999863
No 369
>PRK13699 putative methylase; Provisional
Probab=92.16 E-value=0.19 Score=38.18 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=32.3
Q ss_pred EEEEecCCCC--CCCCCCeeEEEECCCcc---------------------chhHHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHG--YEREAPYDIIHVSPSYF---------------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~--~~~~~~~D~v~~~~~~~---------------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++++|..+. ..+.+++|+|+.++++. .++.++.++|||||.+++.+
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4566665533 34557788888887763 13467889999999988643
No 370
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.09 E-value=1.6 Score=35.10 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC---CCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER---EAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~ 127 (204)
..+++|+.||.|.+..-+....- --+.++|+++.+++.-+.+... ..++..|....... ...+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCE
Confidence 45899999999999877766541 1577889999988888777542 33445554432211 117899
Q ss_pred EEECCCccc
Q psy10572 128 IHVSPSYFT 136 (204)
Q Consensus 128 v~~~~~~~~ 136 (204)
++..+++..
T Consensus 71 ligGpPCQ~ 79 (328)
T COG0270 71 LIGGPPCQD 79 (328)
T ss_pred EEeCCCCcc
Confidence 999888754
No 371
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.90 E-value=0.6 Score=38.29 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
++.+|+-+|+|. |..+...++.++ ++|+.+|.++...+.+...+.. .+.....+.......-..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEE
Confidence 345799999985 777777777654 4899999998776655443211 1111111100000001358999
Q ss_pred EECCCc-----cc-hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSY-----FT-IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~-----~~-~~~~~~~~Lk~gG~l~~~~ 155 (204)
+..... +. +.+...+.+++++.++-.-
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 876422 22 3477778899998776533
No 372
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.80 E-value=2 Score=34.42 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc-eEEEEe-cCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVVW-NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~-d~~---~~~~ 120 (204)
+.++.+||-.|+ | .|.++..+++..+ +++++++.++...+.+++.+.. .. +..... +.. ....
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHhC
Confidence 578899998886 3 3777777888754 5899988888877777653221 11 110011 111 1111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. ..+|+|+-...- .......+.|+++|+++..
T Consensus 219 ~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 P-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred C-CCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 2 469999876554 5678889999999999863
No 373
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.79 E-value=1.1 Score=35.91 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++.....++..-.. .-+.....+.. .......
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~~~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKKLGAT--------HTVNSAKGDAIEQVLELTDGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCC--------ceeccccccHHHHHHHHhCCC
Confidence 46778888777764 566666777653 24788898888776666542110 00111111110 1112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++.........+.+.+.|+++|.++..
T Consensus 235 ~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 235 GVDVVIEAVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence 6999987655445678888999999998764
No 374
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.69 E-value=0.34 Score=38.55 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=57.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCeeEEE
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPYDIIH 129 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 129 (204)
+++|+.||.|.++.-+.... - -.+.++|+++.+.+.-+.|. + ....+|+.+.. .+. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANF----------P--EVICGDITEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhcc----------c--ccccccccccccccccc-cceEEE
Confidence 68999999999998887764 1 26889999999888887775 2 56677765432 222 599999
Q ss_pred ECCCccc----------------hh---HHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT----------------IP---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~----------------~~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+++.. +. -++.+.++|.-.++=.+.+
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred eccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccce
Confidence 8877643 11 3445667776655544443
No 375
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=5.1 Score=31.00 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecCCCCC--CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNGKHGY--ER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~--~~ 121 (204)
-.+...+|+|+|+..-+..+...+.+ ...++.+|++...+....+.+... .+.+++ +.+|..... .+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~------y~~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE------YPGLEVNALCGDYELALAELP 150 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh------CCCCeEeehhhhHHHHHhccc
Confidence 45789999999999988888776632 258999999999887655554331 233333 455544211 22
Q ss_pred CCCeeEE-EECCCcc--------chhHHHHHhcCCCcEEEEEecC
Q psy10572 122 EAPYDII-HVSPSYF--------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 122 ~~~~D~v-~~~~~~~--------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+--++ +....+. .++.++...|+||-.+++-+.-
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 2222222 3222221 2567889999999999885543
No 376
>KOG3924|consensus
Probab=91.59 E-value=1 Score=36.89 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh-------hcCccccCccce
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-------KGNSELLDQGRV 108 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~~~~~~ 108 (204)
....+.+.+. ++++....|+|+|.|.+...++... ....-.|+|+....-+.+..+.. ..+. ....+
T Consensus 180 ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk---~~~~~ 253 (419)
T KOG3924|consen 180 QLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK---KPNKI 253 (419)
T ss_pred HHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCC---CcCce
Confidence 4444455554 7899999999999999998888776 34467788876655544444332 1221 12457
Q ss_pred EEEEecCCCCCCC---CCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEE
Q psy10572 109 QFVVWNGKHGYER---EAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~~~~d~~~~~~~---~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~ 154 (204)
..+++++.....- ....++|++|....+ -..+++.-+++|-+++-.
T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred eecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 7788876543211 134778887765543 124788889999998763
No 377
>PRK10083 putative oxidoreductase; Provisional
Probab=91.53 E-value=1.1 Score=35.86 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
+.++.+|+-.|+|. |..+..+++.......+++++.++...+.+++.-.... +.....+...... ....+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~--------i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV--------INNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE--------ecCccccHHHHHhcCCCCC
Confidence 57788999999765 66666666642022258889988888777765321100 0000111111111 11235
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.............+.|+++|+++..
T Consensus 230 d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 230 TLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 67776655455678889999999999874
No 378
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.38 E-value=0.46 Score=38.02 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=45.8
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECC
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSP 132 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~ 132 (204)
|+|+.||.|.++.-+.+..- -.+.++|+++.+++.-+.+... .+..+|+.+... ....+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhCCCcCEEEecC
Confidence 58999999999987776531 1466799999998888777532 233455443221 113589998877
Q ss_pred Ccc
Q psy10572 133 SYF 135 (204)
Q Consensus 133 ~~~ 135 (204)
++.
T Consensus 68 PCq 70 (315)
T TIGR00675 68 PCQ 70 (315)
T ss_pred CCc
Confidence 663
No 379
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.24 E-value=1.3 Score=37.41 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
..+++|+.||.|.+..-+..... -.+.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHc
Confidence 45999999999999888866532 25788999998887777765
No 380
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.11 E-value=0.66 Score=32.78 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEcCCCc--HHHHHHH-HHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 56 DIGSGSG--YLTACLA-YMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 56 diG~G~G--~~~~~l~-~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
|||+..| .....+. +...+.++++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6555554 2444677999999999999998888
No 381
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.09 E-value=3.9 Score=32.75 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~ 124 (204)
..++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..-.. .-+.....+.. ......+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~ 231 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKKMGAD--------VVINPREEDVVEVKSVTDGTG 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCcc--------eeeCcccccHHHHHHHcCCCC
Confidence 35677888777764 667777777753 22688887777666555432110 00000011110 01122356
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+++...........+.+.|+++|.++..
T Consensus 232 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 999998766666778889999999998764
No 382
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.82 E-value=1.1 Score=36.90 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=48.7
Q ss_pred CEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeE
Q psy10572 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 127 (204)
.+||-||||. |......+... .+.+|+..|.+...+..+.... ..+++....|+..... --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCE
Confidence 4789999974 55444332322 2369999999988877776543 2367778888664310 0134699
Q ss_pred EEECCCccchh
Q psy10572 128 IHVSPSYFTIP 138 (204)
Q Consensus 128 v~~~~~~~~~~ 138 (204)
|+...+...-.
T Consensus 72 VIn~~p~~~~~ 82 (389)
T COG1748 72 VINAAPPFVDL 82 (389)
T ss_pred EEEeCCchhhH
Confidence 98877765433
No 383
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.77 E-value=4.8 Score=29.85 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..+.-...+.+.+. -.+...|+|+|+-.|..+++.+.. .+...+|+++|++-...+.+... .+.+
T Consensus 53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 34444445555555 245568999999998877776654 33446899999887654444321 3689
Q ss_pred EEEEecCCCCCC------CCCCeeEEEEC-CC---ccchh---HHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHGYE------REAPYDIIHVS-PS---YFTIP---QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~~~------~~~~~D~v~~~-~~---~~~~~---~~~~~~Lk~gG~l~~~~ 155 (204)
.+++++...... -++.+--|+.. .. ..+++ +.+..+|..|.++++.-
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 999998664321 01222233322 22 22233 45557888888888743
No 384
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=90.63 E-value=1 Score=35.75 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHh-------------------CCCceEEEEEcC--HHHHHHHHHHhhhc------------
Q psy10572 52 ARILDIGSGSGYLTACLAYMA-------------------GPEGRVYGVEHV--MELAESSIKNIDKG------------ 98 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~-------------------~~~~~v~~vD~~--~~~~~~a~~~~~~~------------ 98 (204)
.+||.||.|.|.=...++..+ .+..+++.||+. ...++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986444444333 011378999854 44555555544332
Q ss_pred CccccCccceEEEEecCCCCCCCC-------CCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 99 NSELLDQGRVQFVVWNGKHGYERE-------APYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~~~~~-------~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.......=++.|.+.|+.....+. ...++|.....+.+ ++..+-..++||..|++.-.++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 000011225778888876543211 13455543333222 44677788999999888665443
No 385
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.57 E-value=1.5 Score=35.72 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGK---HGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~---~~~~~ 121 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+++.-... -+..... +.. .....
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~~~--------~v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQLGATE--------CINPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHhCCCe--------ecccccccchHHHHHHHHhC
Confidence 57788988888875 667777777763 225888898888877775421110 0000011 110 01122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcC-CCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLV-PGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk-~gG~l~~~ 154 (204)
+.+|+++...+.........+.|+ ++|+++..
T Consensus 252 -~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 252 -GGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 469999876554567778889999 99998864
No 386
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=0.042 Score=38.86 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCCCCCCCeeEEEECCCccch--------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...+..++.|+|++-..+.|+ ++.+.+.|||||+|-+.+++..
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 345667889999887777663 4788899999999999998875
No 387
>KOG2920|consensus
Probab=90.53 E-value=0.46 Score=37.08 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHHHHH-hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHH
Q psy10572 35 HIHAQMLELL-KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (204)
Q Consensus 35 ~~~~~~~~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~ 88 (204)
+....+.+.+ ......+++|||+|||+|...+.+.... ...+...|.+...+
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 3444444343 2335778999999999999998887764 25788889888876
No 388
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=90.50 E-value=1.7 Score=34.73 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--C---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--G---KHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~---~~~~~~ 121 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..- . . .++..+ . .....+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~i~~~~~ 232 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAERLG-A--------D--HVLNASDDVVEEVRELTG 232 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHhC-C--------c--EEEcCCccHHHHHHHHhC
Confidence 46778899998765 556666677653 258888888887766664321 1 0 111111 0 011122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++.........+.+.+.|+++|.++..
T Consensus 233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 246999987766556778889999999999864
No 389
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.47 E-value=6 Score=29.65 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
++++||-.|++ |.++..+++.+ ..+.+|++++.++.......+.... ..++.++..|+.... .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 35688888875 45555554443 2345899999888766555443332 125777888866321 0
Q ss_pred --CCCCeeEEEECCCccc-----------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 121 --REAPYDIIHVSPSYFT-----------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 121 --~~~~~D~v~~~~~~~~-----------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+.+|.++.+..... +.+.+...++++|.+++...
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0135788877664311 23455566778887776543
No 390
>PLN02702 L-idonate 5-dehydrogenase
Probab=90.39 E-value=4.3 Score=32.86 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE---EecCCCC---C-
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---VWNGKHG---Y- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~d~~~~---~- 119 (204)
+.++.+|+-.|+|. |..+..+++..+ ...+++++.++...+.++..-. +.+... ..+.... .
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQLGA---------DEIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHhCC---------CEEEecCcccccHHHHHHHHh
Confidence 56778888888764 667777777753 2358888988877776654311 111111 0111100 0
Q ss_pred -CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 -EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+.............+.|+++|+++..
T Consensus 249 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 249 KAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11246899988766556778999999999998653
No 391
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.30 E-value=1.2 Score=35.52 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=59.2
Q ss_pred CEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
.+|.-+|.|. |.-+..++--+ +++|+-+|+|...+......+. .+++....+.......-...|++|.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred ccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 4677788886 77777666654 4699999999988877766543 2455555442211111145888865
Q ss_pred CCCc-----cc-hhHHHHHhcCCCcEEEE
Q psy10572 131 SPSY-----FT-IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 131 ~~~~-----~~-~~~~~~~~Lk~gG~l~~ 153 (204)
.-.. +. +.++..+.+|||+.++=
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 4222 22 45888999999998864
No 392
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.85 E-value=1.6 Score=34.92 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC--C---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG--K---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~---~~~~ 120 (204)
+.++.+||..|+|. |..+..+++..+ .. +++++.++...+.++..- . ..++...- . ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~g-~----------~~~~~~~~~~~~~~~~~~ 223 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARELG-A----------DDTINPKEEDVEKVRELT 223 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcC-C----------CEEecCccccHHHHHHHh
Confidence 56788999998765 667777777653 34 888888877666654321 0 11111110 0 0112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++...........+.+.|+++|.++..-
T Consensus 224 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 224 EGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 22459999877555567788899999999987643
No 393
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.69 E-value=7.2 Score=30.27 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=46.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------CCCC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------EREA 123 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 123 (204)
.+|--|+ |.++..+++.+..+.+|+.++.++..++.....+... ..++.++..|+.+.. ...+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4555554 4677778777755568999998877665554444321 135677778865321 1125
Q ss_pred CeeEEEECCCc
Q psy10572 124 PYDIIHVSPSY 134 (204)
Q Consensus 124 ~~D~v~~~~~~ 134 (204)
.+|+++.+++.
T Consensus 76 ~id~li~nAG~ 86 (275)
T PRK06940 76 PVTGLVHTAGV 86 (275)
T ss_pred CCCEEEECCCc
Confidence 69999988765
No 394
>KOG2912|consensus
Probab=89.65 E-value=1.8 Score=34.61 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------CCCCCee
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------EREAPYD 126 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D 126 (204)
-+|||+|...+--.+.... .+...+++|++......|..++..+. ..+.+.+++....... .++..||
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~----lss~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNN----LSSLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccc----cccceeeEEecchhhcchhhhccCccceee
Confidence 4788888654433332222 23477899999999999999988754 2456777766433211 2234699
Q ss_pred EEEECCCcc
Q psy10572 127 IIHVSPSYF 135 (204)
Q Consensus 127 ~v~~~~~~~ 135 (204)
.+.||+++.
T Consensus 181 FcMcNPPFf 189 (419)
T KOG2912|consen 181 FCMCNPPFF 189 (419)
T ss_pred EEecCCchh
Confidence 999998874
No 395
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.60 E-value=4.9 Score=32.14 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE-EEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-VVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~ 125 (204)
+.++.+|+-.|+|. |..+..+++..+ .+++.++.++...+.++..- . ..+-. ...+.... . ...+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~g-~--------~~vi~~~~~~~~~~-~-~~~~ 233 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALKLG-A--------DEFIATKDPEAMKK-A-AGSL 233 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHcC-C--------cEEecCcchhhhhh-c-cCCc
Confidence 46777887788764 666666677653 58999998888777764321 1 11100 00010011 1 2569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++...........+.+.|+++|.++..-
T Consensus 234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred eEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 999876665545788899999999988643
No 396
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=89.52 E-value=7 Score=31.19 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++.....+++. .. ..+..+-. ....
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~-g~-----------~~~~~~~~~~~~~l~~~~ 231 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAAL-GA-----------EPINFEDAEPVERVREAT 231 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHh-CC-----------eEEecCCcCHHHHHHHHh
Confidence 46778888887664 556666677653 12788888777665555431 10 11111100 0012
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++.............+.|+++|.++..-
T Consensus 232 ~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 232 EGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 23469999876665567788899999999987643
No 397
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=89.41 E-value=0.84 Score=32.89 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=45.7
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
-|..++..+-+.+...+|+|+..|.+.-..+++. .+++++++|+-.+|-...+.+...
T Consensus 68 gmrhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvql 125 (286)
T PF05575_consen 68 GMRHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQL 125 (286)
T ss_pred chhHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeee
Confidence 3555555556778899999999999998888888 678999999888877766666544
No 398
>KOG2782|consensus
Probab=89.35 E-value=0.45 Score=35.78 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
-+....++.+. ..++...+|..-|.|..+..+.+.. ++.++++.|.+|.+-+.|+...
T Consensus 30 Vm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 35667777777 6788999999999999999998887 7789999999999888887665
No 399
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.29 E-value=5 Score=30.95 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
.....++.+.. ++++.. |..-||+-.++..+.+.-. ++..+|+.|+-....+.++.. ..++++.++|.
T Consensus 76 ~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~qD---Rl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG 143 (279)
T COG2961 76 ELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQD---RLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDG 143 (279)
T ss_pred HHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchhc---eeeeeecCccHHHHHHHHhCC-------CcceEEEecCc
Confidence 34444444442 566666 8899999999888888543 899999999999999998875 45899999997
Q ss_pred CC----CCCCCCCeeEEEECCCccc
Q psy10572 116 KH----GYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 116 ~~----~~~~~~~~D~v~~~~~~~~ 136 (204)
.. ..++.+.--+|++++++..
T Consensus 144 ~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 144 FLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred HHHHhhhCCCCCcceEEEeCCCccc
Confidence 63 3355567889999999854
No 400
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.21 E-value=8.2 Score=30.86 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~ 122 (204)
..++.+|+-.|+|. |..+..+++..+ .+ +++++.++...+.++..-.. .-+.....+... ...+.
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~l~~~~~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKMGAT--------YVVNPFKEDVVKEVADLTDG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCc--------EEEcccccCHHHHHHHhcCC
Confidence 45777888777653 666666777653 44 88887777666665442110 000111111110 11223
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++...........+.+.|+++|.++..
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence 56999988755556678889999999998764
No 401
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=89.15 E-value=6.5 Score=31.55 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~ 121 (204)
.++.+||-.|+|. |..+..+++..+ ...++.++.++...+.+.+. .. ..++...-. .....
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKAA-GA----------DVVVNGSDPDAAKRIIKAAG 241 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHh-CC----------cEEecCCCccHHHHHHHHhC
Confidence 4677888888775 777777777753 22788888888777776432 11 011111100 00112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+|+++...+.......+.+.|+++|+++..
T Consensus 242 -~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 -GGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 26999997666556788999999999999863
No 402
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.11 E-value=0.74 Score=33.52 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|.-+|+|. |......++.++ ++|+++|.+......+... .+.+ .++.+ .. ...|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~------------~~~~--~~l~e-ll--~~aDi 94 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEF------------GVEY--VSLDE-LL--AQADI 94 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHT------------TEEE--SSHHH-HH--HH-SE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhcccc------------ccee--eehhh-hc--chhhh
Confidence 3578999999986 776666666654 6999999988765522111 1211 12111 11 34788
Q ss_pred EEECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+...+... +-++....+|+|.+|+= +.-+
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lvN-~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLVN-VARG 129 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE-SSSG
T ss_pred hhhhhccccccceeeeeeeeeccccceEEEe-ccch
Confidence 877766422 34788888988776554 4433
No 403
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.03 E-value=4.1 Score=30.17 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.....+|-+|.- +|.....+.. ..++|+.+|+.|.+-... .+++.|... ..+..+.+|+
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls---~~~~vtv~Di~p~~r~~l-------------p~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLS---KADKVTVVDIHPFMRGFL-------------PNNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhc---ccceEEEecCCHHHHhcC-------------CCCccHhhh----cCCCCCceeE
Confidence 456789999987 4666554444 356999999999864443 235555554 2234577999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+-..++...--+.++-+.|+- +++.-+.+
T Consensus 103 ivDlTGlGG~~Pe~L~~fnp~v-fiVEdP~g 132 (254)
T COG4017 103 IVDLTGLGGIEPEFLAKFNPKV-FIVEDPKG 132 (254)
T ss_pred EEeccccCCCCHHHHhccCCce-EEEECCCC
Confidence 9988888777777777777764 44444444
No 404
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=88.86 E-value=6.8 Score=31.76 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .. +++++.++...+.++.. .. ..++.. +.. ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~~-g~----------~~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKEL-GA----------THTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHh-CC----------ceEecCCcccHHHHHHHH
Confidence 36777888777663 666666777653 35 88898888777766432 11 111111 110 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+...+|+|+....-......+.+.|+++|.++...
T Consensus 252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 223569999876554336788899999999988753
No 405
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.78 E-value=2.4 Score=33.82 Aligned_cols=96 Identities=20% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCCC-CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHGY-ER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~~-~~ 121 (204)
+.++.+||-.|+|. |..+..+++.. .+.++++++.++...+.+++. .. .. ++.. +..... ..
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~~-g~--------~~--v~~~~~~~~~~~~v~~~ 227 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKEV-GA--------DL--TINSKRVEDVAKIIQEK 227 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHc-CC--------cE--EecccccccHHHHHHHh
Confidence 57888999999764 66777777763 235899999999888888542 11 11 1111 100000 00
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+.+|.++.........+.+.+.|+++|.++..-
T Consensus 228 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 228 TGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence 1247866555555667788999999999988643
No 406
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.65 E-value=1.8 Score=28.90 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=58.3
Q ss_pred EEEEEcCCCc-HHHH-HHHHHhCCCceEEE-EEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 53 RILDIGSGSG-YLTA-CLAYMAGPEGRVYG-VEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 53 ~vLdiG~G~G-~~~~-~l~~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+|.-||+|.. ..-. .+.+. .+..++.+ +|.++...+.+.+.. ++. ...|..+. ......|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~~-----------~~~-~~~~~~~l-l~~~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEKY-----------GIP-VYTDLEEL-LADEDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHT-----------TSE-EESSHHHH-HHHTTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHHh-----------ccc-chhHHHHH-HHhhcCCEEE
Confidence 5777899863 3222 23333 24557665 599988777664443 222 33332222 2234699999
Q ss_pred ECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+..+...-.+.+..+|+-|-.+++.-|-..
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSS
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcC
Confidence 888887777888888888888887665544
No 407
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.50 E-value=5 Score=30.01 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCC-cHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.+.+||-+|.|. |.- ...+.+ .++.|+.++.... ........ ..++.++..+...... ..+|+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~--~~l~~l~~--------~~~i~~~~~~~~~~dl--~~~~l 72 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELE--SELTLLAE--------QGGITWLARCFDADIL--EGAFL 72 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCC--HHHHHHHH--------cCCEEEEeCCCCHHHh--CCcEE
Confidence 467999999986 333 222333 3458888865443 11111111 1368888877654333 45999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++......+-..+....+..|+++-.+
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 9998888777788888888888777433
No 408
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.37 E-value=2 Score=35.24 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEe---cCC---CC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVW---NGK---HG 118 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---d~~---~~ 118 (204)
.+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+++.-. +.+ ..... +.. ..
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~~g~---------~~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKEMGA---------DYVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC---------CEEEcccccccccHHHHHHH
Confidence 356788888888765 666677777653 2278999888876666554211 111 00000 110 11
Q ss_pred CCCCCCeeEEEECCCc-cchhHHHHHhcCCCcEEEEE
Q psy10572 119 YEREAPYDIIHVSPSY-FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~-~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+...+|+|+..... ........+.|+++|+++..
T Consensus 270 ~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 270 VTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred hcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 1223469999876553 23667888999999999864
No 409
>KOG1198|consensus
Probab=88.33 E-value=1.5 Score=35.73 Aligned_cols=101 Identities=19% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~ 123 (204)
..++..||-+|.++ |.+++.+++..+ ...+..-.+.+.++.+++.-++. -+.+...+..+.... ..
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd~--------vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGADE--------VVDYKDENVVELIKKYTGK 224 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCcE--------eecCCCHHHHHHHHhhcCC
Confidence 56778888888776 567778888763 34555566787888877653321 122222222222111 46
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.||+|+-...-..........++.|+..++.+..+
T Consensus 225 ~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 225 GVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 79999988777666666667777777666665544
No 410
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.89 E-value=3.9 Score=31.04 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEE--EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..+.+||-+|.|.-..-. +...+..+++|+.+ ++++.+.+.+. ..+++++..++..... ..++
T Consensus 23 ~~~~~VLVVGGG~VA~RK-~~~Ll~~gA~VtVVap~i~~el~~l~~------------~~~i~~~~r~~~~~dl--~g~~ 87 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIK-GKTFLKKGCYVYILSKKFSKEFLDLKK------------YGNLKLIKGNYDKEFI--KDKH 87 (223)
T ss_pred CCCCEEEEECCCHHHHHH-HHHHHhCCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCc
Confidence 457799999999744321 22222123455555 67776655432 2468888776554433 3588
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++......+-+.+....+.-|.++..+..
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 9998888888888888888777776665543
No 411
>PRK08324 short chain dehydrogenase; Validated
Probab=87.86 E-value=4.8 Score=35.88 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
+++.+|-.|+ +|.++..+++.+ ..+.+|+.+|.++..++.+...+.. ..++.++..|..+.. .
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 4567776665 445555554443 1345899999998776665544322 135777788865321 1
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+.+|+|+.+.+.
T Consensus 493 ~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 493 ALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12468999988763
No 412
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.76 E-value=6.5 Score=26.51 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCc-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
.++ +|+|+|-|.= ..+..++++ ++.++++|+++. .+ ...+.+...|......+ -...|
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------------~~g~~~v~DDitnP~~~iY~~A~ 72 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------------PEGLRFVVDDITNPNISIYEGAD 72 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------------cccceEEEccCCCccHHHhhCcc
Confidence 444 9999999863 334445553 358999999886 11 13577888887654432 24689
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++--+.+++...+.++- +.|..+++.-..+.
T Consensus 73 lIYSiRpppEl~~~ildva~aVga~l~I~pL~Ge 106 (129)
T COG1255 73 LIYSIRPPPELQSAILDVAKAVGAPLYIKPLTGE 106 (129)
T ss_pred ceeecCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 9999888888776666554 34555666554443
No 413
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.73 E-value=2 Score=35.42 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+.++.+||-|++|.......+... | .+|++||.||..+...+-+.+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 789999999988876665555553 2 4999999999988777766554
No 414
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.67 E-value=2.2 Score=34.13 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCC---CCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGK---HGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~---~~~~~~~ 123 (204)
.++.+|+-.|+|. |..+..+++..+ ..++++++.++...+.++..-. ..+ .....+.. .......
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~lg~---------~~~~~~~~~~~~~~~~~~~~~~ 231 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARKMGA---------TRAVNVAKEDLRDVMAELGMTE 231 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHhCC---------cEEecCccccHHHHHHHhcCCC
Confidence 4677888777765 666777777653 2257788877776665544211 110 00011110 1112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+|+...+.......+.+.|+++|.++..-
T Consensus 232 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 232 GFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 68999886665567788899999999998754
No 415
>KOG3350|consensus
Probab=87.45 E-value=9.3 Score=27.94 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=77.3
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
+..++++..++....+++........+.+|-.+.|-+=++-...-...-+.-+|+-+|.+... ...
T Consensus 48 wQlsqfwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--------e~y------ 113 (217)
T KOG3350|consen 48 WQLSQFWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--------ELY------ 113 (217)
T ss_pred hhhhhhhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--------Hhc------
Confidence 445677778888888877776556677788888887755211111111134588888876543 221
Q ss_pred ccceEEEEecCCCCC-CC---CCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 105 QGRVQFVVWNGKHGY-ER---EAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~-~~---~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
.-+|+.-|..... .| .+.||+|++++++-.- ...+..+.+++-.++++++.--.++.
T Consensus 114 --g~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~ 180 (217)
T KOG3350|consen 114 --GTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWA 180 (217)
T ss_pred --cceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHH
Confidence 2456666644221 22 2569999999998542 25666778888899887776544433
No 416
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=87.30 E-value=2.6 Score=34.16 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++.. .. ..++.. +.. ....
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~~-g~----------~~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARRF-GA----------THTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHHh-CC----------eEEeCCCCccHHHHHHHHc
Confidence 56778888888764 667777777653 22488888888776666432 11 111111 110 0112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++...........+.+.|+++|+++..-
T Consensus 248 ~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 248 DGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 23569999876654566788899999999987643
No 417
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.23 E-value=6.5 Score=26.97 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
....+|+|+|-|.=. .+..|.++. ..++++|+.+. .+ ...+.++..|+.....+ -...|
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a-------------~~g~~~v~DDif~P~l~iY~~a~ 72 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KA-------------PEGVNFVVDDIFNPNLEIYEGAD 72 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---cc-------------ccCcceeeecccCCCHHHhcCCc
Confidence 345599999999744 445555542 59999999987 11 12567788887654322 14699
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++--+..++...+.++- +-|.-+++...++.
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 9999887777665555443 34666777665554
No 418
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.90 E-value=4.1 Score=35.76 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=60.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
.+|+-+|+|. .+..+++.+. .+.+++.+|.++..++.+++. ...++.+|..+.. ..-.+.|
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCccCC
Confidence 4677676664 4444444331 234899999999998888642 4678899977432 1224677
Q ss_pred EEEECCCccchh---HHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++........ -...+.+.|+..+++...+..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 777665554422 344566788988888776654
No 419
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=86.72 E-value=3.9 Score=32.08 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=44.8
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+...+.....++..|||.-+|+|..+........ ..+|+|+++..++.+..++..
T Consensus 212 ~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 212 IERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHHHh
Confidence 3333333368899999999999999887777553 899999999999999999876
No 420
>KOG0821|consensus
Probab=86.56 E-value=2.3 Score=32.26 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+.-|++||.|+|+.+..+.... ..+...+|.++..+.-.+...++. ..++.+.++|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence 45689999999999999998764 237888898888776665554432 235666666654
No 421
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.46 E-value=8.5 Score=34.00 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+|||. |......... .+..++.+|.++..++.+++. ...++.+|..+.. ..-+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 35788888885 5544333332 234899999999999888652 4678899977432 122467
Q ss_pred eEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.+++....... .-...+.+.|+-.+++...+.
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 777766555432 234445567777777655444
No 422
>KOG2539|consensus
Probab=86.25 E-value=4.9 Score=33.84 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcC-ccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGN-SELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
...++|+|+|.|...-.+....+ ..-.+..||.+..+.+......+... ..+....++ +--+..........||+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~--~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKL--VFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhcccc--chhcccCCCCcccceeeE
Confidence 35788899887654433333321 12368899999999999988876511 000011111 111111222334569999
Q ss_pred EECCCccchh----------HHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFTIP----------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~~~----------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++...+.++. ..+.+..++|+.+++.-.+..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9987665422 456677889999888665554
No 423
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=86.15 E-value=3 Score=29.93 Aligned_cols=93 Identities=22% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCcHHHH-HHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
...+.+|.=.|+|....+. .+.... +.--.+.+|.++.- ...- +....+.++..+... ....|
T Consensus 65 ~~~gk~I~~yGA~~kg~tlln~~g~~-~~~I~~vvD~np~K-----~G~~------~PGt~ipI~~p~~l~----~~~pd 128 (160)
T PF08484_consen 65 KAEGKRIAGYGAGAKGNTLLNYFGLD-NDLIDYVVDDNPLK-----QGKY------LPGTHIPIVSPEELK----ERKPD 128 (160)
T ss_dssp HHTT--EEEE---SHHHHHHHHHT---TTTS--EEES-GGG-----TTEE-------TTT--EEEEGGG------SS--S
T ss_pred HHcCCEEEEECcchHHHHHHHHhCCC-cceeEEEEeCChhh-----cCcc------cCCCCCeECCHHHHh----hCCCC
Confidence 3577889999999855442 222221 22245677987641 1100 112345555555222 24567
Q ss_pred EEEECCCc--cchhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSY--FTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.|+..+.. ..+.+.+...++.||.+++.+|
T Consensus 129 ~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 129 YVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp EEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred EEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 77765433 2356777788899999998654
No 424
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=86.01 E-value=12 Score=29.99 Aligned_cols=95 Identities=15% Similarity=-0.013 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~---~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+...- .. .++... ... ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g---------~~--~v~~~~~~~~~~~~~~~~ 239 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARKFG---------AD--VVLNPPEVDVVEKIKELT 239 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHHcC---------Cc--EEecCCCcCHHHHHHHHh
Confidence 56777887777654 666677777763 235788888887666554321 11 111111 000 111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+...+|+++...........+.+.++++|+++..
T Consensus 240 ~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 240 GGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 2235899987655445677889999999998774
No 425
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.80 E-value=15 Score=29.28 Aligned_cols=92 Identities=23% Similarity=0.271 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC----CCCCC
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK----HGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~ 121 (204)
+.++.+||-.|+ |. |..+..+++..+ +++++++.+. ..+.++.. + .. .+...+-. .....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~~ 240 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRAL----G-----AD--TVILRDAPLLADAKALG 240 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHhc----C-----Ce--EEEeCCCccHHHHHhhC
Confidence 577889999997 43 777777777753 5788887543 44444321 1 11 11111100 01122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++..... .....+.+.|+++|.++..
T Consensus 241 ~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 241 GEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 3469999866553 4678889999999998753
No 426
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.76 E-value=3.5 Score=33.00 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~~ 120 (204)
+.++.+|+-.|+|. |..+..+++..+ ...+++++.++...+.++..-. ..++... .. ....
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~ga-----------~~v~~~~~~~~~~~i~~~~ 233 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALAREFGA-----------TDIVAERGEEAVARVRELT 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCC-----------ceEecCCcccHHHHHHHhc
Confidence 56677887788775 677777777763 2258888877766555543211 0111111 00 0012
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+...+|+++....-......+.+.++++|.++..
T Consensus 234 ~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 234 GGVGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 2345899987655455778899999999998764
No 427
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=85.32 E-value=2.9 Score=33.37 Aligned_cols=94 Identities=26% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+... .. -.++..+ .. ...
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~~-g~----------~~~~~~~~~~~~~~i~~~ 229 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKKL-GA----------DYTIDAAEEDLVEKVREL 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-CC----------cEEecCCccCHHHHHHHH
Confidence 57788888888763 666666777653 45 88888888777666431 11 1111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+...+|+|+...........+.+.|+++|+++..
T Consensus 230 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 230 TDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 22345899987666555778888999999999864
No 428
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=85.19 E-value=12 Score=28.99 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~ 122 (204)
+.++.+|+-.|+ | .|..+..+++.. +.+++.++.++ ..+.++. +. . ..++.. +... ....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~-~g--------~--~~~~~~~~~~~~~-~~~~ 206 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS-LG--------A--DEVIDYTKGDFER-AAAP 206 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH-cC--------C--CEEEeCCCCchhh-ccCC
Confidence 567789998886 3 366666667664 35788877655 5554432 11 0 011111 1111 1223
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+|+++...... ....+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 4689888755443 6688889999999987643
No 429
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=84.90 E-value=4.9 Score=32.17 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~---~~ 119 (204)
+.++.+|+-.|+|. |..+..+++.. +.++++++.++...+.++.. .. . .++.. +... ..
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~-g~--------~--~~i~~~~~~~~~~~~~~~ 229 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAREL-GA--------V--ATVNASEVEDVAAAVRDL 229 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHh-CC--------C--EEEccccchhHHHHHHHH
Confidence 46778999889764 66667777765 35899998888877777432 11 1 11111 1110 01
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... .+|+++.............+.|+++|.++..
T Consensus 230 ~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 230 TGG-GAHVSVDALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred hCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Confidence 222 6999987655445667889999999998764
No 430
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.65 E-value=12 Score=32.59 Aligned_cols=93 Identities=9% Similarity=-0.077 Sum_probs=56.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
.+++-+|||. .+..+++.+. .+.+++.+|.+++.++.+++ ....++.+|..+.. ..-+..|
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~ 483 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCAR 483 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccC
Confidence 5777777775 3334444431 23489999999998888864 24678899977432 1224688
Q ss_pred EEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+++..+... ..-...+...|+-.++..+.+.
T Consensus 484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 484 WLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred EEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6665433322 1223345567888887766443
No 431
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=84.58 E-value=17 Score=29.01 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---------H 117 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---------~ 117 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-.. .++..+-. .
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~-----------~~i~~~~~~~~~~~~~~~ 226 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALAMGAD-----------IVVDPAADSPFAAWAAEL 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHcCCc-----------EEEcCCCcCHHHHHHHHH
Confidence 56788888888653 556666666653 22478888888777776543111 11111100 0
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+.+|+++-...-........+.++++|.++..-
T Consensus 227 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 227 ARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 01223459999865443346677889999999987643
No 432
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.31 E-value=10 Score=30.23 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 127 (204)
++.+|+-+|+|. |......+... ....++.++.++.........+. ...... +..+. . ...|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra~~la~~~g-----------~~~~~~~~~~~~-l--~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERAEELAKELG-----------GNAVPLDELLEL-L--NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHcC-----------CeEEeHHHHHHH-H--hcCCE
Confidence 678999999975 55544444332 22478889998775433322221 112211 11111 1 34899
Q ss_pred EEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+...+.... ...+.......+.+++.+..+
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 9998877665 333333333367888877654
No 433
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=84.23 E-value=5 Score=31.86 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CCCEEEEE--cCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 50 PGARILDI--GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 50 ~~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
++..++-+ |+|. |..+..+++..+ +++++++.++...+.+++.-. . .++.. +... ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~g~---------~--~~i~~~~~~~~~~v~~~~ 208 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKIGA---------E--YVLNSSDPDFLEDLKELI 208 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCC---------c--EEEECCCccHHHHHHHHh
Confidence 34444443 5554 677777777753 589999989888777765211 1 11111 1110 112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+++...... ........++++|+++..-
T Consensus 209 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 209 AKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEEE
Confidence 224589998655543 3466788899999987753
No 434
>PRK08618 ornithine cyclodeaminase; Validated
Probab=84.08 E-value=20 Score=28.78 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D 126 (204)
....++.-+|||. |...........+-.++..++.++...+...+.+.... .+.+.. .+..+. . ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~-~--~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-------NTEIYVVNSADEA-I--EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-------CCcEEEeCCHHHH-H--hcCC
Confidence 3456899999996 54433332222133478888999887766665554311 122222 221111 1 3589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++..+..+..-. ..|+||-.+ ..+.+
T Consensus 195 iVi~aT~s~~p~i~--~~l~~G~hV-~~iGs 222 (325)
T PRK08618 195 IIVTVTNAKTPVFS--EKLKKGVHI-NAVGS 222 (325)
T ss_pred EEEEccCCCCcchH--HhcCCCcEE-EecCC
Confidence 99887766554333 788886554 44443
No 435
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.92 E-value=24 Score=29.52 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
.+.....+...+........+|+-+|+| .++..+++.+. .+..++.+|.++..++.++... .++.++
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i 280 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVL 280 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEE
Confidence 4445555555555434456789888885 45544555442 2358999999999887776532 246678
Q ss_pred EecCCCCC----CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 112 VWNGKHGY----EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 112 ~~d~~~~~----~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+|..... ..-..+|.|++...... ....+.+.+.+. .+++.+.+
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~ 332 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK-KVIALVNR 332 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECC
Confidence 88865321 12246888877654432 122333444443 44444433
No 436
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.91 E-value=5.3 Score=31.03 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ ..+++++.++...+.+++. . .. .++..+ .. ...
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~-g--------~~--~~~~~~~~~~~~~~~~~ 200 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARAA-G--------AD--HVINYRDEDFVERVREI 200 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHC-C--------CC--EEEeCCchhHHHHHHHH
Confidence 567889998884 4 3677777777753 5889988888777766432 1 11 111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++..... .......+.|+++|.++..-
T Consensus 201 ~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 201 TGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred cCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEe
Confidence 223469999876554 46778889999999988643
No 437
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=83.74 E-value=4.5 Score=28.59 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC----CCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER----EAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~ 124 (204)
....-|||+|-|+|.-=-.+...+ |+..++++|..-..-..+ -.+.-.++.+|+.+.... ..+
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp~~------------~P~~~~~ilGdi~~tl~~~~~~g~~ 93 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHPSS------------TPPEEDLILGDIRETLPALARFGAG 93 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG---------------GGGEEES-HHHHHHHHHHH-S-
T ss_pred CCCCceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCCCC------------CCchHheeeccHHHHhHHHHhcCCc
Confidence 455789999999999988898888 788999999532211111 012334566665543211 234
Q ss_pred eeEEEECCCccc----------hhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.-++..+.+... +...+..+|.|||+++-..
T Consensus 94 a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 94 AALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 556655555432 4456678899999987643
No 438
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.69 E-value=6.6 Score=30.94 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=48.2
Q ss_pred CEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCeeEE
Q psy10572 52 ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 128 (204)
.+|+-+|.|- |.++..+.... ....+++.|.+...++.+...- +.... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lg------------v~d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELG------------VIDELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcC------------cccccccchh--hhhcccCCEE
Confidence 5788899885 34445444443 5567899999888777775321 11111 1100 1122457888
Q ss_pred EECCCccc---hhHHHHHhcCCCcEE
Q psy10572 129 HVSPSYFT---IPQKLLDQLVPGGRM 151 (204)
Q Consensus 129 ~~~~~~~~---~~~~~~~~Lk~gG~l 151 (204)
+..-+... +++++...|++|.++
T Consensus 69 ivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHHHHHHHHHHhcccCCCCCEE
Confidence 88777654 334555556666554
No 439
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=83.60 E-value=5.5 Score=31.04 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~ 122 (204)
+.++.+|+-.|| | .|..+..+++..+ ..+++++.++...+.++..... .-+.....+.. ......
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARALGAD--------HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHcCCc--------eeeecCCccHHHHHHHHcCC
Confidence 567889999998 3 3666666666643 5799998888777766432100 00000001110 011122
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++..... .....+.+.++++|.++..
T Consensus 207 ~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVGG-DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECccH-HHHHHHHHhhccCCEEEEE
Confidence 458998876554 4567788999999998764
No 440
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=83.60 E-value=4.6 Score=31.57 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .+ ++++..++...+.++.. . . ..++... .. ...
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~-g--------~--~~~~~~~~~~~~~~l~~~ 193 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL-G--------A--TEVVTDDSEAIVERVREL 193 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-C--------C--ceEecCCCcCHHHHHHHH
Confidence 56788888887653 556666666653 46 88887777666544321 1 1 1111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+...+|+++...+.........+.|+++|.++..-
T Consensus 194 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 194 TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 223469999887655556788899999999998643
No 441
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.46 E-value=6.7 Score=33.09 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+++|+-+|-|- |..+..+.... +..+++.|.++.......... ...++.+..+.... .....+|+|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~~~~~~~~~--------~~~~i~~~~g~~~~--~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAPEGLAAQPL--------LLEGIEVELGSHDD--EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCccchhhhhh--------hccCceeecCccch--hccccCCEEE
Confidence 78999999994 76666666554 369999998777622222211 13567777776444 2235699999
Q ss_pred ECCCccc
Q psy10572 130 VSPSYFT 136 (204)
Q Consensus 130 ~~~~~~~ 136 (204)
.+++.+.
T Consensus 75 ~SPGi~~ 81 (448)
T COG0771 75 KSPGIPP 81 (448)
T ss_pred ECCCCCC
Confidence 9988754
No 442
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.99 E-value=9.6 Score=30.25 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 52 ARILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+|.-||+|. |. ++..+.+.. ....++++|.++...+.++.. + . ... ...+... .. ...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~~~----g-----~-~~~-~~~~~~~-~~--~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARAREL----G-----L-GDR-VTTSAAE-AV--KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhC----C-----C-Cce-ecCCHHH-Hh--cCCCEEE
Confidence 5788899886 33 233333321 223799999999877666432 1 0 001 1111111 11 3579998
Q ss_pred ECCCccc---hhHHHHHhcCCCcEEE
Q psy10572 130 VSPSYFT---IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 130 ~~~~~~~---~~~~~~~~Lk~gG~l~ 152 (204)
...+... +.+.+...++++..++
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 8877643 3456666788887554
No 443
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.95 E-value=23 Score=28.87 Aligned_cols=95 Identities=25% Similarity=0.348 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ...++++|.++...+.+++.-. ..+.....+.. ..... .
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~i~~~~~-~ 242 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAESIGA---------IPIDFSDGDPVEQILGLEP-G 242 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCC---------eEeccCcccHHHHHHHhhC-C
Confidence 56788888888875 667777777653 2278889988877776654210 00000000100 01112 4
Q ss_pred CeeEEEECCCccc-----------hhHHHHHhcCCCcEEEE
Q psy10572 124 PYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 124 ~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~ 153 (204)
.+|+++....... .+..+.+.|+++|.+..
T Consensus 243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 5898887654332 36788999999999854
No 444
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.69 E-value=21 Score=27.98 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
+++++|-.|++ |.++..+++.+ ..+.+++.++.++. ..+.....+... ..++.++..|+.+.. .
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHH
Confidence 35678877754 44555555443 23458888877642 233333333221 135677888865321 1
Q ss_pred ---CCCCeeEEEECCCc
Q psy10572 121 ---REAPYDIIHVSPSY 134 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~ 134 (204)
..+.+|+++.++..
T Consensus 118 i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 118 TVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHcCCCCEEEECCcc
Confidence 11468988877543
No 445
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=82.66 E-value=1 Score=32.22 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH-HHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v 128 (204)
+++++-+|+..-..-.....+ ...++..+|.++--++. .+.++ ..+...|+...+ ...++||.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~dr~------------ssi~p~df~~~~~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFRDRL------------SSILPVDFAKNWQKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCccccccc------------ccccHHHHHHHHHHhhccchhh
Confidence 456777777754443333333 23478888876521111 11110 111112222111 112568877
Q ss_pred EECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.....+ -..++.+.||+||.+++.++-+.
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 66544433 23678899999999999998775
No 446
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.64 E-value=5.4 Score=31.66 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+.++.+|.-+|+|......++++. | .+|..||+++..+...+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 678889999999977666666664 2 4999999999998887777654
No 447
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.52 E-value=15 Score=29.29 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=52.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH--hhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 52 ARILDIGSGS-G-YLTACLAYMAGPEGRVYGVEHVMELAESSIKN--IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.+|+-+|+|. | .++..|++.. ..|+.++.++..++..++. +.... ............. ..+..++|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~r~~~~~~~i~~~~Gl~i~~-----~g~~~~~~~~~~~-~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG---LPVRLILRDRQRLAAYQQAGGLTLVE-----QGQASLYAIPAET-ADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC---CCeEEEEechHHHHHHhhcCCeEEee-----CCcceeeccCCCC-cccccccCE
Confidence 4789999996 4 4556665532 4799999887666555432 11000 0111111111111 112357998
Q ss_pred EEECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++..-..+ .++.+...+.++..++.....
T Consensus 74 viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 74 LLLACKAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred EEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 877644333 456777788888866554433
No 448
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.52 E-value=5.9 Score=27.57 Aligned_cols=99 Identities=21% Similarity=0.102 Sum_probs=49.6
Q ss_pred EEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEEEEC
Q psy10572 54 ILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDIIHVS 131 (204)
Q Consensus 54 vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 131 (204)
|+-+|+|. |.+-...... .+.+|+.+..++ ..+..+..--.... ...+..+......... ....++|+|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITG---PDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEE---TTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEe---cccceecccccccCcchhccCCCcEEEEE
Confidence 45577775 4443333322 335899999777 55554332111000 0011111111111111 234679999887
Q ss_pred CCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 132 PSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 132 ~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.-... .++.+...+.++..+++...+.
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 54443 5567888889997776644433
No 449
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.52 E-value=20 Score=27.46 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
++++|-.|+ +|.++..+++.+ ..+.+|+.++.++...+...... ..++.++..|+.+.. .
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 457776665 455555555543 23458999998876544443322 135777888866321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+...
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 11468999887653
No 450
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.51 E-value=6.8 Score=30.95 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~ 127 (204)
.+.+++-+|+|. |......++.. +++++.++.++...+.+... ...... .+..+ .. ..+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~------------g~~~~~~~~l~~-~l--~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEM------------GLIPFPLNKLEE-KV--AEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------CCeeecHHHHHH-Hh--ccCCE
Confidence 467999999986 44444444443 35899999888654443211 111111 11111 11 35899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
|+...+..-+.......++++ .+++.+.+......+
T Consensus 213 Vint~P~~ii~~~~l~~~k~~-aliIDlas~Pg~tdf 248 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKH-AVIIDLASKPGGTDF 248 (287)
T ss_pred EEECCChHHhCHHHHhcCCCC-eEEEEeCcCCCCCCH
Confidence 998776654456677888875 566666555444333
No 451
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=81.86 E-value=2.4 Score=32.57 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
...+++|.-||+|..+..+.... ..++.-|+++......+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 68899999999999998886633 389999999998877764443
No 452
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=81.70 E-value=27 Score=28.56 Aligned_cols=104 Identities=22% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE-------------E
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-------------V 112 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~ 112 (204)
+.++.+||-.|+ |. |..+..+++..+ .++++++.++...+.+++.-.....+.-..+..... .
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKE 268 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhc
Confidence 567889999987 43 777777777753 578888888888888765211100000000000000 0
Q ss_pred e-cCC---CCCCCCC-CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 113 W-NGK---HGYEREA-PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 ~-d~~---~~~~~~~-~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. ... ....... .+|+++..... .......+.++++|+++..
T Consensus 269 ~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 269 ARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred cchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 0 000 0011222 58999876543 4567788999999999874
No 453
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.49 E-value=5.4 Score=31.13 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++....|+|+-+|+.+-.+.++. ..|++||-. .|.... - ..+.++-...|.....+...+.|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng-~ma~sL----~-------dtg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNG-PMAQSL----M-------DTGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc---eEEEEeccc-hhhhhh----h-------cccceeeeeccCcccccCCCCCce
Confidence 5788999999999999999998864 499999943 333222 1 235778888887765444466887
Q ss_pred EEECCC
Q psy10572 128 IHVSPS 133 (204)
Q Consensus 128 v~~~~~ 133 (204)
.+|+-+
T Consensus 274 mVCDmV 279 (358)
T COG2933 274 MVCDMV 279 (358)
T ss_pred EEeehh
Confidence 777643
No 454
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.35 E-value=10 Score=28.13 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcC
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV 84 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~ 84 (204)
...+|+-+|||. |......+... .-++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 456899999995 55433333332 22488888876
No 455
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=81.34 E-value=6.3 Score=24.43 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcC
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHV 84 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~ 84 (204)
...++||-+||.+|+ ++..++..++.++..+||-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 445799999999997 445566666567788888643
No 456
>KOG1209|consensus
Probab=81.26 E-value=15 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCC--------
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------- 118 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 118 (204)
.....||-.||..|..+-.+++.+. .++.|++.-.+-+ |.+.+.+. .+.....|..+.
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~------------gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF------------GLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh------------CCeeEEeccCChHHHHHHHH
Confidence 4567899999999999999988763 4568888754433 33333221 233444443321
Q ss_pred ---CCCCCCeeEEEECCCc
Q psy10572 119 ---YEREAPYDIIHVSPSY 134 (204)
Q Consensus 119 ---~~~~~~~D~v~~~~~~ 134 (204)
..+.++.|+.+.|++.
T Consensus 73 evr~~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQ 91 (289)
T ss_pred HHhhCCCCceEEEEcCCCC
Confidence 1356889999888665
No 457
>PRK07340 ornithine cyclodeaminase; Validated
Probab=81.05 E-value=22 Score=28.28 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
....+++-+|||. |...........+..++...+.++...+.....+... .+.+...+..+.. ...|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--------~~~~~~~~~~~av---~~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--------GPTAEPLDGEAIP---EAVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------CCeeEECCHHHHh---hcCCE
Confidence 4457999999996 5444444333223347888899988776666655431 1222222222111 46899
Q ss_pred EEECCCccc-hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT-IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+...+... ++.. .+|||-.+ ..+.
T Consensus 192 VitaT~s~~Pl~~~---~~~~g~hi-~~iG 217 (304)
T PRK07340 192 VVTATTSRTPVYPE---AARAGRLV-VAVG 217 (304)
T ss_pred EEEccCCCCceeCc---cCCCCCEE-EecC
Confidence 987665544 3332 36766544 4444
No 458
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.81 E-value=22 Score=26.80 Aligned_cols=99 Identities=20% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.+.++|-.|+. |.++..+++.+ ..+.+|+++..+.. ..+.....+... ..++.++..|+.... .
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 34678877754 45555555544 23457888776542 233332222221 135667777765321 0
Q ss_pred ---CCCCeeEEEECCCcc-------------------chhHHHHHhcCCCcEEEEEe
Q psy10572 121 ---REAPYDIIHVSPSYF-------------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~-------------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+..|+++.+.... .+.+.+...++.+|.+++..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 113588888776431 13355666666667766543
No 459
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=80.62 E-value=9 Score=30.26 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ .++++++.++...+.+++.+.. ..++.. +.. ...
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~v~~~ 210 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF----------DAAINYKTPDLAEALKEA 210 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC----------ceEEecCChhHHHHHHHh
Confidence 467788988884 4 3777777777753 5899998888777766552211 011111 110 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.. ..+|+++....- .....+.+.|+++|.++..
T Consensus 211 ~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 211 AP-DGIDVYFDNVGG-EILDAALTLLNKGGRIALC 243 (329)
T ss_pred cc-CCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence 12 469988865443 4678888999999998753
No 460
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.35 E-value=14 Score=27.87 Aligned_cols=77 Identities=12% Similarity=-0.025 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
++.++|-.|+ +|.++..+++.+ ..+.+++.++.++..++.+.+.+... ..++.++..|.....
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 3567887776 444555554443 23458999998887665555444331 235677777765321
Q ss_pred -CCCCCeeEEEECCC
Q psy10572 120 -EREAPYDIIHVSPS 133 (204)
Q Consensus 120 -~~~~~~D~v~~~~~ 133 (204)
...+++|.|+.+.+
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 00146899988765
No 461
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=80.25 E-value=9.8 Score=30.00 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=57.5
Q ss_pred CCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCCCC
Q psy10572 50 PGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYEREAP 124 (204)
Q Consensus 50 ~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 124 (204)
.+.+||-.|+ |. |..+..+++..+ .+++.++.++...+.++..- . ..+-..... ..... ....
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g-~--------~~v~~~~~~~~~~~~~~-~~~~ 213 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKLG-A--------KEVIPREELQEESIKPL-EKQR 213 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcC-C--------CEEEcchhHHHHHHHhh-ccCC
Confidence 3568888887 43 667777777754 58899988888777774421 1 000000000 00111 2345
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+|+..... .......+.|+++|+++..-
T Consensus 214 ~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 214 WAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred cCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 8988865544 56788899999999998754
No 462
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.92 E-value=21 Score=28.38 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------- 119 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 119 (204)
+++++-.|++ +.++..+++.+ ..+++|+.+..+....+.+...+.... ...++.++..|+.+..
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV----PDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4577766665 45555555544 234689999888876666655543311 1235788888875321
Q ss_pred CCCCCeeEEEECCCc
Q psy10572 120 EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+++.
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112568999888653
No 463
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.85 E-value=13 Score=29.60 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+||-.|+++ |..+..+++..+ .+++.+..++...+.++. +.. . .++.. +.. ...
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~--------~--~v~~~~~~~~~~~~~~~ 229 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-LGA--------D--AFVDFKKSDDVEAVKEL 229 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-cCC--------c--EEEcCCCccHHHHHHHH
Confidence 57788999888864 677777788764 489999888877666632 211 1 11111 110 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+...+|+++.............+.++++|+++..-
T Consensus 230 ~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 230 TGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred hcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEec
Confidence 223469999875555567788899999999998754
No 464
>KOG2811|consensus
Probab=79.74 E-value=6.1 Score=32.25 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEE---EEcCHHHHHHHHHHhh
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYG---VEHVMELAESSIKNID 96 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~---vD~~~~~~~~a~~~~~ 96 (204)
.++..++|+|||-|.++.+++..+ +...++- +|.....++.=+....
T Consensus 181 ~~~~~~vEFGAGrg~Ls~~vs~~l-~~~~~~l~vlvdR~s~R~K~D~k~~~ 230 (420)
T KOG2811|consen 181 APSSCFVEFGAGRGELSRWVSDCL-QIQNVYLFVLVDRKSSRLKFDRKLRN 230 (420)
T ss_pred CCcceEEEecCCchHHHHHHHHHh-ccccEEEEEeecccchhhhhhhhhhc
Confidence 444799999999999999999988 5556666 7877776665544443
No 465
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.46 E-value=25 Score=29.09 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=55.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
.|+-++-..|.++..++... + +.+ | |-..-...+.|++.++ +....+++. +..+. ++ ..+|+|++.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~-~----~~~~d-s~~~~~~~~~n~~~n~---~~~~~~~~~--~~~~~-~~-~~~d~vl~~ 113 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHK-P----YSIGD-SYISELATRENLRLNG---IDESSVKFL--DSTAD-YP-QQPGVVLIK 113 (378)
T ss_pred CEEEEcCchhHHHHHHHhCC-C----Ceeeh-HHHHHHHHHHHHHHcC---CCcccceee--ccccc-cc-CCCCEEEEE
Confidence 88999999999999998643 3 222 3 3333444556666654 111234333 22222 22 458999886
Q ss_pred CCc-----cchhHHHHHhcCCCcEEEEE
Q psy10572 132 PSY-----FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 132 ~~~-----~~~~~~~~~~Lk~gG~l~~~ 154 (204)
-+- .+.+..+...|.||+.+++.
T Consensus 114 ~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 114 VPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred eCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 554 34667888999999998753
No 466
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.41 E-value=14 Score=28.00 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++.| ++..+++.+ ..+.+|+.++.++..++.....+... ..++.++..|..+..
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4567887776554 444444443 23458999998887766665554431 135667777765321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+...
T Consensus 81 ~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 011478999887654
No 467
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.37 E-value=19 Score=27.61 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++.| ++..+++.+ ..+++|+.++.++..++...+.+.... ..++.++..|..+..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 3567776666554 444444443 234689999998877766655543311 235777888866321
Q ss_pred CCCCCeeEEEECCCc
Q psy10572 120 EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.+...
T Consensus 81 ~~~g~iD~lv~nag~ 95 (263)
T PRK08339 81 KNIGEPDIFFFSTGG 95 (263)
T ss_pred HhhCCCcEEEECCCC
Confidence 112468999887653
No 468
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=79.32 E-value=12 Score=29.69 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+||-.|++ .|..+..+++..+ .+++.++.++...+.++.. .... . ..+ .+ ..+... . ..+
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~---~-~~~-~~-~~~v~~-~---~~~ 226 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYV---I-VGS-KF-SEEVKK-I---GGA 226 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHh---c-Cch-hH-HHHHHh-c---CCC
Confidence 5678899988883 3777788888753 5889898888887777543 2110 0 001 00 000011 1 248
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++..... .....+.+.|+++|.++..-
T Consensus 227 d~~ld~~g~-~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 227 DIVIETVGT-PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred cEEEEcCCh-HHHHHHHHHHhcCCEEEEEe
Confidence 988876554 35678889999999987643
No 469
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.51 E-value=18 Score=28.85 Aligned_cols=98 Identities=18% Similarity=0.101 Sum_probs=48.2
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 51 GARILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
..+|+-+|+|. |. ++..+++. +..|+.+..++. +..+.+..... ....+..+..............+|+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~---g~~V~~~~r~~~--~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA---GFDVHFLLRSDY--EAVRENGLQVD---SVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCCH--HHHHhCCeEEE---eCCCCeeecCceEEcchhhcCCCCEE
Confidence 45899999986 44 44445443 247777776542 22222110000 00011111111111111123579999
Q ss_pred EECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++.-.... ..+.+...+++++.++....
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecC
Confidence 87654443 45677788889987665433
No 470
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=78.43 E-value=12 Score=29.90 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCCCC
Q psy10572 50 PGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYEREAP 124 (204)
Q Consensus 50 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~ 124 (204)
++.+|+-.| +|. |..+..+++..+ ++++++..+ ...+.++.. + .. .++.. +..........
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~~~----g-----~~--~~~~~~~~~~~~~l~~~~~ 227 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVKSL----G-----AD--DVIDYNNEDFEEELTERGK 227 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHHHh----C-----Cc--eEEECCChhHHHHHHhcCC
Confidence 388888888 343 677777777654 477776633 333333221 1 00 11111 10111111245
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+++...... ....+.+.|+++|+++..-
T Consensus 228 vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 228 FDVILDTVGGD-TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CCEEEECCChH-HHHHHHHHhccCCEEEEec
Confidence 99998765544 6788899999999998753
No 471
>PRK06484 short chain dehydrogenase; Validated
Probab=78.40 E-value=37 Score=28.97 Aligned_cols=74 Identities=11% Similarity=-0.022 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
++.+|-.|++ |.++..+++.+. .+.+|+.++.++..++....... .....+..|..+.. .
T Consensus 269 ~k~~lItGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~ 338 (520)
T PRK06484 269 PRVVAITGGA-RGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG---------DEHLSVQADITDEAAVESAFAQIQ 338 (520)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceeEEEccCCCHHHHHHHHHHHH
Confidence 4566655554 455555555442 34589999988876665544321 23455667755321 1
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+++|+++.+++.
T Consensus 339 ~~~g~id~li~nAg~ 353 (520)
T PRK06484 339 ARWGRLDVLVNNAGI 353 (520)
T ss_pred HHcCCCCEEEECCCC
Confidence 12568999988654
No 472
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.20 E-value=21 Score=27.07 Aligned_cols=78 Identities=19% Similarity=0.040 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++++|-.|+ +|.++..+++.+ ..+.+|+.++.++...+.....+... ..++.++..|..+..
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCHHHHHHHHHHH
Confidence 4567886665 445555554443 23458999998887665555444321 135777888865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|.++.+...
T Consensus 77 ~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 77 LERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCccEEEECCcc
Confidence 011468999887653
No 473
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.03 E-value=30 Score=26.90 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~ 122 (204)
+.++.+||-.|+ | .|..+..+++..+ ++++++..++...+.++.. . ...+-....+.. ... .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~-g--------~~~~~~~~~~~~~~i~~~--~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKEL-G--------ADEVVIDDGAIAEQLRAA--P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc-C--------CcEEEecCccHHHHHHHh--C
Confidence 467889998886 3 4777788888753 5799988888776666431 1 111100011110 011 3
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++....- .......+.|+++|+++..
T Consensus 207 ~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVLELVGT-ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 569999876553 5678888999999998653
No 474
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.85 E-value=27 Score=26.20 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----CC--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----ER-- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 121 (204)
++.++|-.| |+|.++..+++.+. .+.+++.++.++..+......+... ..++.++..|+.+.. ..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 356777555 46667666666542 3458888888877665554444321 136788888876321 10
Q ss_pred ---CCCeeEEEECCCc
Q psy10572 122 ---EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ---~~~~D~v~~~~~~ 134 (204)
.++.|.++.+...
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1468999887654
No 475
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.83 E-value=30 Score=27.14 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=48.1
Q ss_pred EEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
+|.-+|+|. |. ++..+++. +.+|+.++.++..++..+..-.. ....... ..........+...+|+|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~g~~-----~~~~~~~-~~~~~~~~~~~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARRGAHLDALNENGLR-----LEDGEIT-VPVLAADDPAELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECChHHHHHHHHcCCc-----ccCCcee-ecccCCCChhHcCCCCEEEE
Confidence 578899986 43 33333332 24899999877666555432100 0000110 00000111111257999887
Q ss_pred CCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 131 SPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 131 ~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
...... +++.+...+.++..++....
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecC
Confidence 755443 44666667777666655433
No 476
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=77.52 E-value=9.7 Score=29.96 Aligned_cols=93 Identities=24% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ +.++.+.-+....+.++.. .. . .++... .. ...
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~-g~--------~--~~~~~~~~~~~~~i~~~ 203 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRAL-GI--------G--PVVSTEQPGWQDKVREA 203 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHhc-CC--------C--EEEcCCCchHHHHHHHH
Confidence 577889988875 3 3777777788764 4777776566555555431 10 1 111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+...+|+|+..... .....+.+.|+++|+++..
T Consensus 204 ~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 204 AGGAPISVALDSVGG-KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred hCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEEE
Confidence 222469999876554 4567889999999998764
No 477
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=77.45 E-value=12 Score=29.36 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+|+-.|+ | .|..+..+++..+ .++++++.++...+.++.. .. . .++.. +.. ...
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~-g~---------~-~~~~~~~~~~~~~~~~~ 206 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRAL-GA---------D-VAVDYTRPDWPDQVREA 206 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc-CC---------C-EEEecCCccHHHHHHHH
Confidence 567888888884 3 3777777788754 5899998888877766432 11 1 11111 100 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++....-. ......+.|+++|.++..-
T Consensus 207 ~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 207 LGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred cCCCCceEEEECCChH-hHHHHHHHhccCcEEEEEe
Confidence 2224699998765544 4588899999999988654
No 478
>PRK06141 ornithine cyclodeaminase; Validated
Probab=77.37 E-value=35 Score=27.28 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
....+|+-+|||. |...........+..+++..+.++...+.....+...+ .++.. ..+..+. . ...|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g------~~~~~-~~~~~~a-v--~~aDI 192 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG------FDAEV-VTDLEAA-V--RQADI 192 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC------CceEE-eCCHHHH-H--hcCCE
Confidence 4557999999986 55544322322244589999999887766665554311 11221 1111111 1 35898
Q ss_pred EEECCCccc-hhHHHHHhcCCCcEEEEE
Q psy10572 128 IHVSPSYFT-IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 128 v~~~~~~~~-~~~~~~~~Lk~gG~l~~~ 154 (204)
|++..+... ++. ...++||-.+...
T Consensus 193 Vi~aT~s~~pvl~--~~~l~~g~~i~~i 218 (314)
T PRK06141 193 ISCATLSTEPLVR--GEWLKPGTHLDLV 218 (314)
T ss_pred EEEeeCCCCCEec--HHHcCCCCEEEee
Confidence 876544432 122 2567888744443
No 479
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.11 E-value=17 Score=29.22 Aligned_cols=78 Identities=12% Similarity=-0.021 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.+++||-.|++ |.++..+++.+ ..+.+++.++.++..++.....+...+ .++.++..|+.+.. .
T Consensus 6 ~~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 35677766664 44555554443 234689999999888776666554422 35667777765321 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+.+|+++.+...
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 12568999988764
No 480
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.87 E-value=28 Score=26.06 Aligned_cols=78 Identities=17% Similarity=0.043 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-------- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 120 (204)
++.+++-.|+ +|.++..+++.+. .+.+++.++.++...+.....+.... .....+...|......
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-----HPEPFAIRFDLMSAEEKEFEQFAA 78 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-----CCCcceEEeeecccchHHHHHHHH
Confidence 3468888885 4555555555442 34689999988876665554443211 1234455555432100
Q ss_pred ----C-CCCeeEEEECCC
Q psy10572 121 ----R-EAPYDIIHVSPS 133 (204)
Q Consensus 121 ----~-~~~~D~v~~~~~ 133 (204)
. .+.+|.|+.+..
T Consensus 79 ~i~~~~~~~id~vi~~ag 96 (239)
T PRK08703 79 TIAEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHHHhCCCCCEEEEecc
Confidence 0 045798887765
No 481
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.69 E-value=11 Score=32.20 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..++.+|+-+|.|. |..+..+++.. ++.+++.|..+...+.+++ ..+.+..++...... ..+|
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~------------~g~~~~~~~~~~~~l--~~~D 72 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAE------------RGVATVSTSDAVQQI--ADYA 72 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHh------------CCCEEEcCcchHhHh--hcCC
Confidence 34678999999996 65555555543 3689999977654332221 123444332211111 3479
Q ss_pred EEEECCCccc
Q psy10572 127 IIHVSPSYFT 136 (204)
Q Consensus 127 ~v~~~~~~~~ 136 (204)
+|+..++.+.
T Consensus 73 ~VV~SpGi~~ 82 (488)
T PRK03369 73 LVVTSPGFRP 82 (488)
T ss_pred EEEECCCCCC
Confidence 9998887643
No 482
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=76.52 E-value=8.4 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCH
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVM 85 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~ 85 (204)
.+++|.-+|.|. |.-....++.+ +++|+++|.+.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSG 178 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCc
Confidence 456889999986 66655555554 36999999753
No 483
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.09 E-value=31 Score=26.12 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------- 119 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 119 (204)
++++|-.|++ |.++..+++.+. .+.+++.++.++..++.....+... ..++.++..|+....
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------GGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4567755555 555555555432 3458999998887766665554431 135677777865321
Q ss_pred CCCCCeeEEEECCCc
Q psy10572 120 EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 79 ~~~~~id~li~~ag~ 93 (254)
T PRK07478 79 ERFGGLDIAFNNAGT 93 (254)
T ss_pred HhcCCCCEEEECCCC
Confidence 012468999888754
No 484
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=76.08 E-value=16 Score=28.70 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~---~~~ 120 (204)
+.++.+|+-.|++. |.....+++.. +.+++.++.++...+.++... . ...+... +... ...
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~ 231 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKELG---------A-DYVIDYRKEDFVREVRELT 231 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC---------C-CeEEecCChHHHHHHHHHh
Confidence 46778999888764 55555556654 357888888887666653321 0 1111111 1000 011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+++.+.+. .....+.+.++++|.++...
T Consensus 232 ~~~~~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 232 GKRGVDVVVEHVGA-ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCCCcEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 22468999877654 35577888999999987653
No 485
>KOG1201|consensus
Probab=75.75 E-value=25 Score=27.92 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 50 PGARILDIGSGSGY---LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
.+..||-=|.|+|. ++..++++. +.+...|++....+...+.+++.+ .+.....|..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHHHHH
Confidence 45688888888764 344445543 478889999998888877776532 5677777765321
Q ss_pred ---CCCCCeeEEEECCCc
Q psy10572 120 ---EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ---~~~~~~D~v~~~~~~ 134 (204)
.+-+..|+++.|++.
T Consensus 107 ~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHhcCCceEEEecccc
Confidence 233789999999776
No 486
>PRK06194 hypothetical protein; Provisional
Probab=75.70 E-value=22 Score=27.47 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
+.++|-.| |+|.++..+++.+. .+.+|+.+|.++..++.....+... ..++.++.+|+.+.. .
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45777555 55666666655442 3458999998877665554443321 135777888865321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..++.|+|+.++..
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 11458999888765
No 487
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.60 E-value=36 Score=26.48 Aligned_cols=98 Identities=26% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+|+-.|+ | .|..+..+++..+ +++++++.+ ...+.++.. ... .-+.....+..........+
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~~-g~~-------~~~~~~~~~~~~~~~~~~~~ 209 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRSL-GAD-------EVIDYTTEDFVALTAGGEKY 209 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHHc-CCC-------EeecCCCCCcchhccCCCCC
Confidence 567889999997 3 3677777777653 588888743 444444321 110 00000000110111223569
Q ss_pred eEEEECCCcc-chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHVSPSYF-TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+++....-. .........++++|.++....
T Consensus 210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVGG 241 (319)
T ss_pred cEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence 9998765421 112222334999999987543
No 488
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.16 E-value=32 Score=27.00 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
+.++|-.|++ |.++..+++.+ ..+.+|+.++.+...++...+.+... ...+.++..|..+.. .
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4577767764 45555555543 23468999999887766655544321 124667788865321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+++.
T Consensus 113 ~~~g~id~li~~AG~ 127 (293)
T PRK05866 113 KRIGGVDILINNAGR 127 (293)
T ss_pred HHcCCCCEEEECCCC
Confidence 12468999988653
No 489
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=75.16 E-value=11 Score=29.39 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCC--cH--HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS--GY--LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~--~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
.+...+||.+|+|+ |. -+..+.+-++.++.++-.|+.+-. .+--..+.+|...... +.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-----------------SDa~~~~~~Dc~t~~~-~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-----------------SDADQSIVGDCRTYMP-PD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------SSSEEEES-GGGEEE-SS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-----------------cccCCceeccccccCC-CC
Confidence 35678999999996 43 345555666445666777765431 1223345667554433 36
Q ss_pred CeeEEEECCCc-------------cc----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSY-------------FT----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~-------------~~----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++|+|+++--. .. +..-+...|+-||.+.+.+-.-
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 89999986331 11 3355668899999999866433
No 490
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=74.92 E-value=42 Score=26.92 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.+.+|.-+|+|. |......+...+-..++.-+|++...++--..-+..-. ....++.+..++. +. -...|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~---~~~~~~~i~~~~~-~~---~~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV---PFTSPTKIYAGDY-SD---CKDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc---cccCCeEEEeCCH-HH---hCCCCE
Confidence 4567999999986 65555444433222378999998775433333222210 0012344443331 11 245898
Q ss_pred EEECCCc
Q psy10572 128 IHVSPSY 134 (204)
Q Consensus 128 v~~~~~~ 134 (204)
|++.+..
T Consensus 77 vIitag~ 83 (315)
T PRK00066 77 VVITAGA 83 (315)
T ss_pred EEEecCC
Confidence 8887665
No 491
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=74.81 E-value=35 Score=28.05 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE---EEEec----C---
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ---FVVWN----G--- 115 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~d----~--- 115 (204)
+.++.+||-.|+ |. |..+..+++..+ ++++.++.++...+.+++.-...- +...... -.... .
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G--~~vi~~~~~~~~~~~~~~~g~~~~---v~~~~~~~~~~~~~~~~~~~~~~ 261 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGG--GNPVAVVSSPEKAEYCRELGAEAV---IDRNDFGHWGRLPDLNTQAPKEW 261 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHcCCCEE---ecCCCcchhhccccccccccchh
Confidence 467789999997 43 667777777653 577888878777776654211100 0000000 00000 0
Q ss_pred ----------CCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 116 ----------KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 116 ----------~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.........+|+++..... .......+.|+++|.++..-
T Consensus 262 ~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g 310 (398)
T TIGR01751 262 TKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVICG 310 (398)
T ss_pred hhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEEc
Confidence 0001112459988876553 45677889999999998764
No 492
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=74.81 E-value=19 Score=28.28 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCCCC-EEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cC---CCCCC
Q psy10572 48 IKPGA-RILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NG---KHGYE 120 (204)
Q Consensus 48 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~---~~~~~ 120 (204)
+.++. +|+-.|+ |. |..+..+++..+ .+++.+..++...+.++..- .. .++.. +. .....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~~g---------~~--~~~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKELG---------AS--EVIDREDLSPPGKPLE 208 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHhcC---------Cc--EEEccccHHHHHHHhc
Confidence 46677 9998887 43 777777777764 47777766666555553321 10 11111 10 00111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++-.... .....+.+.|+++|+++..
T Consensus 209 -~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 209 -KERWAGAVDTVGG-HTLANVLAQLKYGGAVAAC 240 (323)
T ss_pred -CCCceEEEECccH-HHHHHHHHHhCCCCEEEEE
Confidence 1248988776553 3567889999999999774
No 493
>PRK08589 short chain dehydrogenase; Validated
Probab=74.81 E-value=34 Score=26.39 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++++|-.|++. .++..+++.+ ..+.+++.++.+ ..++.....+... ..++.++..|+.+..
T Consensus 5 ~~k~vlItGas~-gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 5 ENKVAVITGAST-GIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHH
Confidence 355777666654 4455554443 234689999988 4444333333321 135777788865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.++..
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 012468999888654
No 494
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.35 E-value=23 Score=26.74 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++++||-.|+ +|.++..+++.+. .+.++++++.++...+.....+.... ..++.++..|.....
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecccCCCHHHHHHHH
Confidence 45678887775 5566665555442 34589999998876655554443311 235566666653210
Q ss_pred ----CCCCCeeEEEECCC
Q psy10572 120 ----EREAPYDIIHVSPS 133 (204)
Q Consensus 120 ----~~~~~~D~v~~~~~ 133 (204)
...++.|.|+.++.
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 11146899988764
No 495
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.29 E-value=24 Score=26.89 Aligned_cols=74 Identities=18% Similarity=0.037 Sum_probs=44.6
Q ss_pred EEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------CC
Q psy10572 53 RILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----------ER 121 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 121 (204)
++|-.|++. .++..+++.+ ..+++++.++.++..++.+...+.. ..++.++..|..+.. ..
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKE-------YGEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 567667654 4555555443 2346899999888776666555433 125667777765311 11
Q ss_pred CCCeeEEEECCCc
Q psy10572 122 EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ~~~~D~v~~~~~~ 134 (204)
.++.|+++.+.+.
T Consensus 74 ~g~id~li~naG~ 86 (259)
T PRK08340 74 LGGIDALVWNAGN 86 (259)
T ss_pred cCCCCEEEECCCC
Confidence 2568999887653
No 496
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=74.28 E-value=41 Score=26.48 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEc--CHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~ 121 (204)
+.++.+||-.|+|. |..+..+++..+ .+++.+.. +....+.++..- ...+.....+.. .....
T Consensus 162 ~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~l~~~~~ 230 (306)
T cd08258 162 IRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKELG---------ADAVNGGEEDLAELVNEITD 230 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHhC---------CcccCCCcCCHHHHHHHHcC
Confidence 46777887766543 555666666653 46666532 333333333211 010100011110 01122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
...+|+++...+.........+.|+++|.++..-.
T Consensus 231 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 231 GDGADVVIECSGAVPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcc
Confidence 34699998776555677888999999999986544
No 497
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.18 E-value=6.6 Score=30.43 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc---hhHHH
Q psy10572 65 TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT---IPQKL 141 (204)
Q Consensus 65 ~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~ 141 (204)
+..+.+.. +..+|+|+|.++..++.|.+.-.. .-...+ .+. . ..+|+|+...+... +++++
T Consensus 2 A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~g~~-----------~~~~~~-~~~-~--~~~DlvvlavP~~~~~~~l~~~ 65 (258)
T PF02153_consen 2 ALALRKAG-PDVEVYGYDRDPETLEAALELGII-----------DEASTD-IEA-V--EDADLVVLAVPVSAIEDVLEEI 65 (258)
T ss_dssp HHHHHHTT-TTSEEEEE-SSHHHHHHHHHTTSS-----------SEEESH-HHH-G--GCCSEEEE-S-HHHHHHHHHHH
T ss_pred hHHHHhCC-CCeEEEEEeCCHHHHHHHHHCCCe-----------eeccCC-HhH-h--cCCCEEEEcCCHHHHHHHHHHh
Confidence 44455544 567999999999998888653111 111111 111 1 34699988877654 44556
Q ss_pred HHhcCCCcEE
Q psy10572 142 LDQLVPGGRM 151 (204)
Q Consensus 142 ~~~Lk~gG~l 151 (204)
...+++|+++
T Consensus 66 ~~~~~~~~iv 75 (258)
T PF02153_consen 66 APYLKPGAIV 75 (258)
T ss_dssp HCGS-TTSEE
T ss_pred hhhcCCCcEE
Confidence 6666666544
No 498
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.94 E-value=37 Score=25.82 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.++++|-.|++. .++..+++.+ ..+++|+.++.++...+.+...+.... ..++.++..|..... ...
T Consensus 6 ~~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHh
Confidence 356788777654 4555554433 234589999988876666555443311 235677777765321 112
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
+..|+++.+...
T Consensus 80 g~id~lv~~ag~ 91 (259)
T PRK06125 80 GDIDILVNNAGA 91 (259)
T ss_pred CCCCEEEECCCC
Confidence 568999887653
No 499
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=73.87 E-value=16 Score=28.79 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec----CC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN----GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~---~~~ 119 (204)
+.++.+|+-.|+|. |..+..+++.. +++++.++.++...+.++.. .. .. ++... .. ...
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~-g~--------~~--~~~~~~~~~~~~~~~~~ 224 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKAL-GA--------DH--VINYRTTPDWGEEVLKL 224 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc-CC--------CE--EEcCCcccCHHHHHHHH
Confidence 56777877776653 55556666664 35799998888877776542 11 11 11111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++.... ......+.+.|+++|.++..-
T Consensus 225 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 225 TGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred cCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEEEc
Confidence 22246999987654 456678889999999988643
No 500
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.65 E-value=38 Score=25.83 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++. .++..+++.+ ..+++|+.++.++..++.+...+.... ...++.++..|+.+..
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCCHHHHHHHHHHH
Confidence 356777777654 4444454443 234689999998877666555443311 0135667777865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+.+.
T Consensus 82 ~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 82 EARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHhcCCCCEEEECCCC
Confidence 112568999888764
Done!