RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10572
(204 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 182 bits (465), Expect = 1e-58
Identities = 87/190 (45%), Positives = 111/190 (58%), Gaps = 10/190 (5%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
ML VDR+ F Y IGYG IS+PH+HA MLELL+ +KPG R+L+IGS
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGS 82
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGYLTAC A M G G V +EH+ EL E + +N++K L V VV +G+ G+
Sbjct: 83 GSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-----LGLENVIVVVGDGRQGW 137
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
APYD IHV + IP+ L+DQL GGR+V+PVG Q L DK DG ++
Sbjct: 138 PEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGN-QVLQQFDKRNDGSVVIKD 196
Query: 180 VVRGVRTNPL 189
+ GVR PL
Sbjct: 197 LE-GVRFVPL 205
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 146 bits (370), Expect = 3e-44
Identities = 75/190 (39%), Positives = 104/190 (54%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L V R+ F E Y +IGYG IS+PH+ A M ELL+ +KPG ++L+IG+
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY A LA + G +G V +E + ELAE + + + K L V +V +G G+
Sbjct: 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-----LGLDNVIVIVGDGTQGW 141
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+V+ + IP+ L+DQL GG +VMPVGE Q L +K I+
Sbjct: 142 EPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKRGG--EIIIK 197
Query: 180 VVRGVRTNPL 189
V V PL
Sbjct: 198 DVEPVAFVPL 207
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 144 bits (366), Expect = 1e-43
Identities = 71/168 (42%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG G IS+PH+ A+ML+LL+ +KPG R+L+IG+GSGY A LA + G RV +E +
Sbjct: 49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERI 103
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ 144
ELAE + +N+ E L V +G G+ EAPYD I V+ + +P+ LLDQ
Sbjct: 104 EELAEQARRNL-----ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQ 158
Query: 145 LVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192
L PGGR+V+PVG Q L I K DG + VR PL
Sbjct: 159 LKPGGRLVIPVGSGPA-QRLLRITKDGDG-NFERRDLFNVRFVPLVGG 204
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 120 bits (303), Expect = 3e-34
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R F + Y +IGYG IS+ H+ A M ELL +K G ++L+IG+
Sbjct: 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGT 85
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY A +A + G G+V +E + ELAE + K + K L V+ +V +G GY
Sbjct: 86 GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEVIVGDGTLGY 140
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+V+ + IP+ L++QL GG MV+PVG Q L ++K D I+
Sbjct: 141 EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYS--QELIRVEK--DNGKIIKK 196
Query: 180 VVRGVRTNPLY 190
+ V PL
Sbjct: 197 KLGEVAFVPLI 207
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 118 bits (299), Expect = 2e-33
Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
+ R+ F V E ++ K+ + IG G IS P++ A+M ELL+ +KPG R+L
Sbjct: 30 IEATPRELF----VPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
+IG+GSGY A LA++ RV+ VE + L + + + + L V +G
Sbjct: 84 EIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHGDG 135
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
G+ AP+D I V+ + IP+ LL+QL GG +V PVG + Q LT + K
Sbjct: 136 WKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQ-QLLTRVRKRGGR-- 192
Query: 176 IVTTVVRGVRTNPL 189
V+ VR PL
Sbjct: 193 FEREVLEEVRFVPL 206
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 105 bits (263), Expect = 2e-28
Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 16/178 (8%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
ML V R+ F V+ E YR+ + + + GA IS+PH+ A M EL++ + PG +IL
Sbjct: 24 MLSVPREEF---VMPE-YRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPR--PGMKIL 77
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
++G+GSGY A A G+VY VE V ELA + +NI++ L G V+ +G
Sbjct: 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER----LGYWGVVEVYHGDG 133
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
K G E+ AP+D I V+ + TIP L+ QL GG +V+PV E GQ L + K +
Sbjct: 134 KRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVVKRGEK 190
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 91.3 bits (227), Expect = 9e-22
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+S+PHI A MLE ++PG R+L+IGSG GY A LA + GP G V V+ ++ +
Sbjct: 65 VSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTD- 120
Query: 91 SIKNIDKGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVP 147
L +V V+ + + G APYD I V+ + IP LDQL P
Sbjct: 121 -------RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAP 173
Query: 148 GGRMVMPV 155
GGR+V+P+
Sbjct: 174 GGRLVVPL 181
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 69.5 bits (170), Expect = 3e-14
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 2 LRVDRKNFFTR-----VVNEPYRIKSRQIGYGADISS-PHIHAQMLELLKDKIKPGARIL 55
L V R+ F T+ V E + S G SS P + A +E + + G R+L
Sbjct: 28 LEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
+IG G+GY A ++ + G +G V VE+ ++ E I K N L V FV +G
Sbjct: 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE-----IAKRNVRRLGIENVIFVCGDG 140
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 169
+G APYD+I V+ +P+ QL GGR+++P+ NL + +
Sbjct: 141 YYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI-------NLKLSRR 187
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 61.2 bits (149), Expect = 3e-11
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 11 TRVVNEPYRIKSRQIGYGADISS---PHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC 67
T++ + + G SS P + A+MLE L ++ G R+L+IG+G+GY A
Sbjct: 67 TQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAAL 124
Query: 68 LAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124
L + G + V VE + A S++ G + + V +G G+ AP
Sbjct: 125 LCHRLG-DDNVTSVEVDPGLAARAASALAAA--GYAPTV-------VTGDGLLGHPPRAP 174
Query: 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
YD I + + +P L Q PGG ++ +
Sbjct: 175 YDRIIATCAVRRVPPAWLRQTRPGGVILTTLS 206
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 55.4 bits (134), Expect = 2e-10
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109
PGAR+LDIG G+G L P RV GV+ E+ E + +N R+
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARENAKLALGP-----RIT 54
Query: 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVPGGRMVM 153
FV + + +D + + + L L PGGR+V+
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 56.5 bits (137), Expect = 7e-10
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI Y D +I A + I PG+R+L+ G+GSG LTA LA GPEG V E
Sbjct: 76 QIIYPKDAG--YIVA------RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLL 142
+ A+++ +N+ SE RV + + + E D + + P + + + +
Sbjct: 128 REDFAKTARENL----SEFGLGDRVTLKLGDVRE-GIDEEDVDAVFLDLPDPWNVLEHVS 182
Query: 143 DQLVPGGRMV 152
D L PGG +V
Sbjct: 183 DALKPGGVVV 192
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 54.8 bits (132), Expect = 1e-09
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+K G ++LD+G G+GYLT LA GP V G+ +++E +I+ K N++ L
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGI----DISEEAIEK-AKENAKKLGYEN 55
Query: 108 VQFVVWN----GKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVM 153
V+F+ + + E +D++ + +P ++++ L PGG +++
Sbjct: 56 VEFIQGDIEELPQLQLEDN-SFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 49.7 bits (119), Expect = 3e-08
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 20/118 (16%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G R+LD G+GSG A AGP+ RV GV EL + + + RV+
Sbjct: 1 GDRVLDPGAGSGAFLLAAA-RAGPDARVVGV----ELDPEAAALARRRLALAGLAPRVRV 55
Query: 111 VVWNG-KHGYEREAPYDIIHVSPSYFTIP--------------QKLLDQLVPGGRMVM 153
VV + + + +D++ +P Y L L PGG +V+
Sbjct: 56 VVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 47.0 bits (112), Expect = 3e-07
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112
R+LD+G G+G L LA +GP RV GV +++ +++ K + LL V+ +
Sbjct: 1 RVLDLGCGTGALA--LALASGPGARVTGV----DISPVALELARKAAAALLAD-NVEVLK 53
Query: 113 WNGKHG-YEREAPYDIIHVSPSYFTIP-------QKLLDQLVPGGRMVMPV 155
+ + E + +D+I P + ++ L PGG +V+ +
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 47.2 bits (113), Expect = 1e-06
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
++PG R+LD+G G G LA GPEGRV G+ E ++ LA+
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---------L 67
Query: 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI--PQKLLDQLV----PGGRMVM 153
V+FV + + +D + + P + L ++ PGGR+V+
Sbjct: 68 GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 46.1 bits (110), Expect = 2e-06
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ I A L L+ +PG R+ DIG+G+G +T A AGP GRV +E E E
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALEL 73
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV--SPSYFTIPQKLLDQLVPG 148
+N + ++ V + D I + + I + ++L PG
Sbjct: 74 IERNAAR-----FGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPG 128
Query: 149 GRMVM 153
GR+V
Sbjct: 129 GRLVA 133
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 45.5 bits (108), Expect = 4e-06
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 30 DISSPHIHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-- 81
D+ S IH L KD K G + LD+ G+G T L+ AG G+V G+
Sbjct: 25 DVISFGIH----RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDI 80
Query: 82 -EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS------PSY 134
E++++ E K K N ++F+ N + + +DI+ +S P Y
Sbjct: 81 NENMLKEGEKKAKEEGKYN--------IEFLQGNAEELPFEDDSFDIVTISFGLRNFPDY 132
Query: 135 FTIPQKLLDQLVPGGRMV 152
+ ++ L PGGR+V
Sbjct: 133 LKVLKEAFRVLKPGGRVV 150
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 44.8 bits (106), Expect = 8e-06
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 14 VNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG 73
+ P+R QI Y DIS MLEL KPG+ + + G+GSG L+ +A
Sbjct: 77 LALPHRT---QILYTPDISLII---MMLEL-----KPGSVVCESGTGSGSLSHAIARTVA 125
Query: 74 PEGRVYGVE 82
P G +Y E
Sbjct: 126 PTGHLYTFE 134
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 42.3 bits (100), Expect = 2e-05
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMEL 87
++ + A L L+ ++PG + DIG+G+G +T A + P GRVY +E ++L
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDL 58
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD---- 143
E +++ N +++ + D + V S + Q++L+
Sbjct: 59 IERNLRRFGVSNIVIVEGD-----APEAPEDLLPDP--DAVFVGGSGGLL-QEILEAVER 110
Query: 144 QLVPGGRMVMPV 155
+L PGGR+V+
Sbjct: 111 RLRPGGRIVLNA 122
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 43.5 bits (103), Expect = 2e-05
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 27 YGADISSPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ + P I + LL+ ++ RIL+IG+ GY +A +GR+ +E
Sbjct: 34 FARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD 93
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA--PYDIIHV------SPSYFT 136
E AE + +N+ + +D + + R +D++ + P Y
Sbjct: 94 EERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYL- 149
Query: 137 IPQKLLDQLVPGGRMVM 153
++ L L PGG +V
Sbjct: 150 --ERALPLLRPGGLIVA 164
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 42.9 bits (101), Expect = 4e-05
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
++ G LD+ G+ + LA GPEG V G+ E+++ + +K+ N EL+
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV- 101
Query: 105 QGRVQFVVWNGKHGYEREAPYD---IIHVS--------PSYFTIPQKLLDQLVPGGRMV 152
HG E P+D +V+ P Y + +++ + PGG++V
Sbjct: 102 ------------HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 42.5 bits (100), Expect = 4e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L L K +++ G ILDIG G+G +T + + G G+VY V+ + + +N +K
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 41.0 bits (97), Expect = 1e-04
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 42 ELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
LL + K G R+L++G+GSG + A +V GV+ + +E A+ + K
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAK 66
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 41.6 bits (98), Expect = 1e-04
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
+ L LL RILD+G+GSG + LA GP+ V V + LA
Sbjct: 99 LVEAALALLLQL---DKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARE-- 152
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLLD 143
N+E RV V + +D+I VS P Y IP + +
Sbjct: 153 ------NAERNGLVRVLVVQSDLFEPLRG--KFDLI-VSNPPY--IPAEDPE 193
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 40.7 bits (96), Expect = 2e-04
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +K G +LD+G GSG L A + G + +V GV+ + A E++ +N
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL-GAK-KVVGVD-IDPQAVEAARENARLNG 209
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDII--------HVSPSYFTIPQKLLDQLVPGGRM 151
EL VQ + E P+D+I V + + L PGGR+
Sbjct: 210 VEL----LVQAKGFLLLEVPE-NGPFDVIVANILAEVLVE-----LAPDIKRLLKPGGRL 259
Query: 152 VMP---------VGEPFKGQNLTIIDKLADG 173
++ V E ++ +++ L
Sbjct: 260 ILSGILEDQAESVAEAYEQAGFEVVEVLERE 290
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
++KPG +LD+GSG G+ C A GP G+V GV+ E+ + N K
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 39.4 bits (92), Expect = 5e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPGA ++D+ G GY T + GP+G+VY
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 38.8 bits (91), Expect = 8e-04
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 38 AQM--LELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV-MELAESSI 92
AQ L+L+ +K+ KPG +LDIG G G L Y A YGV V + L+E +
Sbjct: 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGL---AIYAA----EEYGVTVVGVTLSEEQL 108
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDII-------HVS----PSYFTIPQK 140
+K + + V+ Y E P+D I HV +F K
Sbjct: 109 AYAEKRIAARGLEDNVEVR----LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFK---K 161
Query: 141 LLDQLVPGGRMVM 153
+ L PGGRM++
Sbjct: 162 VYALLKPGGRMLL 174
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 38.6 bits (90), Expect = 8e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKN 94
+ ++L+ L G R+LD G G+G L+ LA G V V +++E ++
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAV----DISEQMVQM 92
Query: 95 IDKGNSELLDQGRVQFVV 112
G V+F V
Sbjct: 93 ARNRAQGRDVAGNVEFEV 110
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 37.5 bits (87), Expect = 0.001
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 34/124 (27%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A++L L ++KPG R+LDIG G+G L L G V GV
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE-RGF--DVTGV---------------- 50
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI-----PQKLLDQLV----PG 148
+ + F +++ YD+I ++ + P LL QL PG
Sbjct: 51 ---DPSPAAVLIFSLFDAPDPAVLAGKYDLIT---AFEVLEHLPDPPALLQQLRELLKPG 104
Query: 149 GRMV 152
G ++
Sbjct: 105 GVLL 108
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 35 HIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLA 69
+ ++L LLK+K A +LDIG G+GYLT L
Sbjct: 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALL 53
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G +LD+G+G+G L A A + G RV V+ E E I + N+E L G V+F
Sbjct: 46 GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE-----IARANAEELL-GDVEF 97
Query: 111 VV 112
VV
Sbjct: 98 VV 99
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 37.6 bits (88), Expect = 0.002
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +KPG +LD+G GSG L A A G + +V GV+ + +A ++ +N +
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGAK-KVVGVD-IDPVAVRAAKENAE--- 204
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGRMVMPV 155
L+ Q V+ G E D++ V+ +L + PGG +++
Sbjct: 205 ---LNGVEAQLEVYL--PGDLPEGKADVV-VANILADPLIELAPDIYALVKPGGYLILS- 257
Query: 156 GEPFKGQNLTIIDKLADGYTIVTTVVRG 183
G + Q + + + G+ ++T R
Sbjct: 258 G-ILEEQADDVAEAYSQGFELITVEERE 284
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 35.0 bits (81), Expect = 0.004
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114
LDIG G+G L L A P GV +++ ++++ + L G + V
Sbjct: 1 LDIGCGTGTLLRALL-EALPGLEYTGV----DISPAALEAAAE---RLAALGLLDAVRVR 52
Query: 115 GKHG---YEREAPYDIIHVSP--SYFTIPQKLLDQ----LVPGGR 150
+D++ S + P+ +L L PGG
Sbjct: 53 LDVLDAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 36.0 bits (84), Expect = 0.004
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE----HVMELAESSIK 93
++ E K G +LD+G+ G + L G G+V V+ ++
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-GGAGKVVAVDLGPMEPIQGVYFLRG 68
Query: 94 NI-DKGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGG 149
+I D E L + G+V V+ +G D L+ L PGG
Sbjct: 69 DITDPETLEKLRELLPGKVDLVLSDGAPNVSGIENTDSFISLQLVLAALLLALEVLRPGG 128
Query: 150 RMVMPVGEPFKGQNLT--IIDKLADGYTIVTTV 180
V+ V FKG + +++KL G+ V
Sbjct: 129 NFVVKV---FKGFEFSVELLEKLKKGFEKVGIF 158
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 36.7 bits (86), Expect = 0.005
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+PG ++LD+ G+G L LA G G V G+
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 36.3 bits (85), Expect = 0.005
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 26/102 (25%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LE LK R+LD+G+GSG + LA P+ RV V +++ ++ + + N+
Sbjct: 81 LERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAV----DISPEALA-VARKNA 131
Query: 101 ELLDQGRVQFV-------VWNGKHGYEREAPYDIIHVS-PSY 134
L V+F+ + GK +D+I VS P Y
Sbjct: 132 ARLGLDNVEFLQSDWFEPLPGGK--------FDLI-VSNPPY 164
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 143
Score = 35.2 bits (82), Expect = 0.007
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 38 AQMLELLKDKI---KPGARILDIGSGSGYLTACLAY---MAGPEGRVYGVEHVMELAESS 91
A+ +E L ++ ++D G+G GYL L Y RV G++ EL E +
Sbjct: 10 AEFVEPLIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKA 69
Query: 92 IK 93
Sbjct: 70 NA 71
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 35.6 bits (83), Expect = 0.007
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGNSELLDQGR 107
G ++LD+G G G L A LA P+ V V+ + A ES+ N+ E
Sbjct: 30 PLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVD-INARALESARANLAANGLE-----N 82
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSP-------SYFTIPQKLLDQ----LVPGGRMVMPVG 156
+ + E +D+I +P + + + Q+ + L PGG + + V
Sbjct: 83 GEVFWSDLYSAVE-PGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWI-VA 140
Query: 157 EPFKG 161
G
Sbjct: 141 NRHLG 145
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 36.1 bits (84), Expect = 0.007
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 43 LLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LL RILD+G+G+G L LA + ++ GVE E AE + +N+ +
Sbjct: 35 LLAAFAPVPKKGRILDLGAGNGALGLLLA-QRTEKAKIVGVEIQEEAAEMAQRNVA--LN 91
Query: 101 ELLDQGRVQFVVWNGKHGYE--REAPYDIIHVSPSYFTIPQKL 141
L + R+Q + + K + A +D+I +P YF +L
Sbjct: 92 PLEE--RIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRL 132
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 35.0 bits (81), Expect = 0.013
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
LE + + I PG+R+LD+G G G L A L G YG+E
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRG--YGIE 43
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 34.7 bits (81), Expect = 0.017
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
LE L+ + PG +LD+G GSG L A A G +V V+ + A E++ +N +
Sbjct: 109 CLEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGA-KKVLAVD-IDPQAVEAARENAE-- 163
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDII 128
L+ + + G + D+I
Sbjct: 164 ----LNGVELNVYLPQG------DLKADVI 183
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 34.3 bits (79), Expect = 0.024
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
++ R++D+G G G T LA P+ + G+ +SS + K L D
Sbjct: 28 LERPRRVVDLGCGPGNSTELLA-RRWPDAVITGI-------DSSPAMLAKAAQRLPD--- 76
Query: 108 VQFVVWNGKHGYEREAPYDII------HVSPSYFTIPQKLLDQLVPGG 149
F + + ++ E P D++ P + + +L+ QL PGG
Sbjct: 77 ATFEEADLRT-WKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGG 123
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 32.7 bits (75), Expect = 0.025
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RVQFVV 112
ILD+G G+G + LA V GV+ E ++ L D+G +V+FVV
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVDISKE-------ALELAKERLRDKGPKVRFVV 51
Query: 113 WNGKHGYEREAPYDIIH---VSPSYFTIPQ--KLLDQLV----PGG 149
+ + E +D++ +S Y + Q LL + PGG
Sbjct: 52 ADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 34.2 bits (79), Expect = 0.025
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQG 106
IKPG ++LD+ G+G + LA G G V G++ L + K KG
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQN----- 102
Query: 107 RVQFVVWNGKHGYEREAPYDIIHVSPS--YFTIPQKLLDQ----LVPGGR-MVMPVGEPF 159
V+FVV + ++ + +D + +S T K L + L PGGR +V+ +P
Sbjct: 103 -VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161
Query: 160 KGQNLTIIDKL 170
Sbjct: 162 NPVLRKAYILY 172
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 34.1 bits (75), Expect = 0.030
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Query: 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPE 75
E Y + + ++ + ++ L + G +LDIG G+G L LA + G
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-LARLGGRG 72
Query: 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135
V GV+ E+ + + L+D V G +E A +D++
Sbjct: 73 AYVVGVDLSPEMLALARARAEGAGLGLVDF--VVADALGGVLPFEDSASFDLVISLLVLH 130
Query: 136 TIP-----QKLLDQLVPGGRMV 152
+P ++LL L PGGR+V
Sbjct: 131 LLPPAKALRELLRVLKPGGRLV 152
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 34.0 bits (79), Expect = 0.031
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 23/110 (20%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV---MELAESSIKNIDKGN 99
L +K R+LD+G+GSG + LA P+ V V+ + +A +N G
Sbjct: 101 LEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVAR---RNAKHGL 156
Query: 100 SELLDQGRVQFV---VWNGKHGYEREAPYDIIHVS-PSYFTIPQKLLDQL 145
RV+F+ + G +D+I VS P Y IP+ + L
Sbjct: 157 -----GARVEFLQGDWFEPLPGG----RFDLI-VSNPPY--IPEADIHLL 194
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 32.4 bits (74), Expect = 0.10
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ I PG+R+LD+G G G L L +G G+E
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDG--RGIE 43
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 30.7 bits (70), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVE 82
LD+G G+G L LA G RV GV+
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVD 26
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 32.3 bits (74), Expect = 0.14
Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 46/156 (29%)
Query: 41 LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM---------ELAE 89
L+L+ DK +KPG +LDIG G G L + A Y V +V+ + A
Sbjct: 51 LDLILDKLGLKPGMTLLDIGCGWGGL---MRRAA----ERYDV-NVVGLTLSKNQYKHAR 102
Query: 90 SSIKNIDKGNS-ELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSP-SYFTIPQK 140
+ E+L Q F + P+D I HV +Y T +K
Sbjct: 103 QRVAAEGLQRKVEVLLQDYRDF-----------DEPFDRIVSVGMFEHVGHENYDTFFKK 151
Query: 141 LLDQLVPGGRMVM-------PVGEPFKGQNLTIIDK 169
L + L PGG M++ P +G L IDK
Sbjct: 152 LYNLLPPGGLMLLHTITGLHPDETSERGLPLKFIDK 187
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 32.1 bits (74), Expect = 0.15
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 41 LELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
L+L+ K+ KPG R+LDIG G G L Y A YGV
Sbjct: 156 LDLICRKLQLKPGMRVLDIGCGWGGL---ARYAA----EHYGVS 192
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 31.2 bits (71), Expect = 0.16
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELL------D 104
++D+G+ G + A G EGRV E E+ E ++K + N LL
Sbjct: 2 VIDVGANIGDFSLYFA-RKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 105 QGRVQFVVWNGKHG---YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRM 151
G ++F V + G ++ D S + LD LV +
Sbjct: 61 DGELEFNVSDLNTGSSSLAADSSADRETES---IEVEVVTLDDLVEEFGL 107
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 31.8 bits (73), Expect = 0.17
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ G ++LD+ G+G L LA A G+V GV+ E+ E + K SEL
Sbjct: 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLE-----VAKKKSEL--PLN 89
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSPSY----FTIPQKLLDQ----LVPGGRMV 152
++F+ + + + +D V+ ++ T QK L + L PGGR+V
Sbjct: 90 IEFIQADAEALPFEDNSFDA--VTIAFGLRNVTDIQKALREMYRVLKPGGRLV 140
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 31.4 bits (71), Expect = 0.35
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 26 GYGADISSPHIHAQ-------MLELLKDKIKPGARILDIG-SGSGYLTAC------LAYM 71
G A+ PHI++ +LE +D+ I+ +G SG+G T+C LA
Sbjct: 59 GCKAEDMPPHIYSLAQTAYRALLETRRDQ-----SIIFLGRSGAGKTTSCKHALEYLALA 113
Query: 72 AGPEGRVYGVEHV 84
AG VE V
Sbjct: 114 AGSVDGRVSVEKV 126
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 31.0 bits (71), Expect = 0.38
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 22/54 (40%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM-----AGPEGRVYGVE 82
PH+ LK + +LD+G G+GY +M AG + V G++
Sbjct: 116 PHLSP-----LKGR-----TVLDVGCGNGY------HMWRMLGAGAK-LVVGID 152
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 30.6 bits (69), Expect = 0.43
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
LE L+D ++D+G GSG L + A G +V G++ ES+ KN
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGIL-SIAALKLGAA-KVVGIDIDPLAVESARKN 201
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 30.5 bits (70), Expect = 0.45
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 42 ELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
EL++D P RILD+ +GSG + A A P+ V V + +AE
Sbjct: 119 ELIEDGFAPWLEDPPVTRILDLCTGSGCI-AIACAYAFPDAEVDAVDISPDALAVAE--- 174
Query: 93 KNIDK 97
NI++
Sbjct: 175 INIER 179
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 205
Score = 30.3 bits (69), Expect = 0.48
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 15 NEPYRIKSRQIGYGADISSPHIHAQ--MLELL-KDKI-KPGARILDIGSGSGYLTACLAY 70
+PY K+++ GY + A +LEL K K+ KPG ++D+G+ G + A
Sbjct: 13 RDPYYKKAKKEGYRS-------RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAK 65
Query: 71 MAGPEGRVYGVE 82
G G++ V+
Sbjct: 66 KLGAGGKIVAVD 77
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 30.5 bits (69), Expect = 0.57
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 25/135 (18%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESS--IKNIDKGNSE 101
K+K G R+LD +G GY TA A G V VE +V+ELA+ + + + + +
Sbjct: 131 KVKRGERVLDTCTGLGY-TAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFEIAIK 188
Query: 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ---------LVPGGRMV 152
++ + V ++ E+ IIH P F++ +L + L GGR+
Sbjct: 189 IILGDAYEVV-----KDFDDESFDAIIH-DPPRFSLAGELYSEEFYRELYRILKRGGRLF 242
Query: 153 MPVGEP---FKGQNL 164
VG P ++G +L
Sbjct: 243 HYVGNPGKRYRGLDL 257
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 30.3 bits (69), Expect = 0.60
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD---- 104
G ++LD+G G G L LA P+ ++ V+ ES+ KN+ E +
Sbjct: 157 DLGGKVLDLGCGYGVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 105 ------QGRVQFVVWN----GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154
+G+ ++ N +II + + L PGG + +
Sbjct: 216 NLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARH----------LKPGGELWI- 264
Query: 155 VGEPFKGQNLTIIDKLADGYTIVTTVVRG 183
V L KL + + V + +
Sbjct: 265 VANRH----LPYEKKLKELFGNVEVLAKN 289
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 30.2 bits (69), Expect = 0.62
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 36 IHAQMLELLKDKIKPGARILDI 57
I +++ E IKPGA++LD+
Sbjct: 11 IASKVREEAAKLIKPGAKLLDV 32
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 29.8 bits (68), Expect = 0.85
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 37 HAQM----LELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELA 88
H +M L L G RILD G G G L+ LA +V ++E A
Sbjct: 45 HQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEA 101
Query: 89 ESSIKNIDKGNSELLDQGRVQFVV 112
E G + F V
Sbjct: 102 RERAP-------EAGLAGNITFEV 118
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 29.6 bits (66), Expect = 0.90
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 20 IKSRQIGYGAD-ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRV 78
IK+ + +G D ISS I A L ++ +++LDIGSG G C V
Sbjct: 21 IKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLG--GGCKYINEKYGAHV 78
Query: 79 YGV---EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131
+GV E ++ +A+ + +K E D + F Y R+A I+H+S
Sbjct: 79 HGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA---ILHLS 131
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 29.8 bits (67), Expect = 1.2
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVME------LAESSIKNID 96
D IK G I+D+G+G G + + + R+YG+ E+V++ E N+
Sbjct: 415 DYIK-GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVI 472
Query: 97 KGN----SELLDQGRVQFVVWNG-KHGYEREAPYDIIHVSPSYFTIPQKLL---DQLVPG 148
KG+ S ++ V +V++ H Y+ ++ I + L + L PG
Sbjct: 473 KGDAINLSSSFEKESVDTIVYSSILHELFSYIEYE--GKKFNHEVIKKGLQSAYEVLKPG 530
Query: 149 GRMVM 153
GR+++
Sbjct: 531 GRIII 535
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 29.2 bits (66), Expect = 1.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
L + + +K GARI DIGS YL P E V ES+I+N+ K N
Sbjct: 7 LTTVANLVKQGARIADIGSDHAYL-PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN- 64
Query: 101 ELLDQGRV 108
L ++ V
Sbjct: 65 -LSERIDV 71
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IK G+++L +G+ SG + ++ + G EGR+Y VE
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVE 107
>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl
reductase (PTCR)-like, classical (c) SDRs. PTCR is a
classical SDR which catalyzes the NADPH-dependent
reduction of ketones on steroids and prostaglandins.
Unlike most SDRs, PTCR functions as a monomer. This
subgroup also includes human carbonyl reductase 1 (CBR1)
and CBR3. CBR1 is an NADPH-dependent SDR with broad
substrate specificity and may be responsible for the in
vivo reduction of quinones, prostaglandins, and other
carbonyl-containing compounds. In addition it includes
poppy NADPH-dependent salutaridine reductase which
catalyzes the stereospecific reduction of salutaridine
to 7(S)-salutaridinol in the biosynthesis of morphine,
and Arabidopsis SDR1,a menthone reductase, which
catalyzes the reduction of menthone to neomenthol, a
compound with antimicrobial activity; SDR1 can also
carry out neomenthol oxidation. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 225
Score = 29.1 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIK 93
+L LLK P RI+++ SG G LT AY EL E+ IK
Sbjct: 121 LLPLLKKS--PAGRIVNVSSGLGSLT--SAYGVSKAALNALTRILAKELKETGIK 171
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74
+P + ++++ ++ +L+IG G G LT LA A
Sbjct: 14 NPKVINRIVDKAN--LQESDTVLEIGPGKGALTTELAKRAKQ 53
>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
function prediction only].
Length = 339
Score = 28.7 bits (65), Expect = 2.0
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 33/134 (24%)
Query: 43 LLKDKIKPGARILDIG-SGSGYLTA--CLAYMAGPEGRVYGV---EHVMELAESSIKNID 96
L K +KPG + +G G G++ A A V + E +ELA+
Sbjct: 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA----EVIAITRSEEKLELAK------- 207
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGRMV 152
+L G + + EA +I T+ L+ L GG +V
Sbjct: 208 ----KL---GADHVINSSDSD--ALEAVKEIADA--IIDTVGPATLEPSLKALRRGGTLV 256
Query: 153 MPVGEPFKGQNLTI 166
+ VG P G +
Sbjct: 257 L-VGLPGGGPIPLL 269
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 28.2 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++PG +L+IG G G LT L A RV +E
Sbjct: 10 NLRPGDTVLEIGPGKGALTEELLERA---KRVTAIE 42
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase.
This model represents an O-methyltransferase believed
to act at two points in the ubiquinone biosynthetic
pathway in bacteria (UbiG) and fungi (COQ3). A separate
methylase (MenG/UbiE) catalyzes the single
C-methylation step. The most commonly used names for
genes in this family do not indicate whether this gene
is an O-methyl, or C-methyl transferase [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Menaquinone and ubiquinone].
Length = 224
Score = 28.4 bits (64), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 45 KDKIKPGARILDIGSGSGYLTACLA 69
K + G R+LD+G G G L+ LA
Sbjct: 41 KKPLF-GLRVLDVGCGGGLLSEPLA 64
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 28.5 bits (64), Expect = 2.7
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 27/116 (23%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDK--GNSE---LLD 104
G ILD+G G+GY + M G V G++ EL + + K GN + LL
Sbjct: 116 GRTILDVGCGNGYH---MWRMLGEGAALVVGIDP-SELFLCQFEAVRKLLGNDQRAHLLP 171
Query: 105 QGRVQF-------VVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVM 153
G Q V++ Y R +P D H+ +L DQLV GG +V+
Sbjct: 172 LGIEQLPALEAFDTVFSMGVLYHRRSPLD--HLL--------QLKDQLVKGGELVL 217
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase [Coenzyme metabolism].
Length = 243
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
PG R+LD+G G G L+ LA + V G+
Sbjct: 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGI 87
>gnl|CDD|237840 PRK14866, PRK14866, hypothetical protein; Provisional.
Length = 451
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 29 ADISSPHIHAQMLELLKD-KIKPGARILDIGS 59
AD +S HI +LELL + R G+
Sbjct: 10 ADPASVHIREHLLELLDWEERSDEGRPDGGGT 41
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 28.0 bits (63), Expect = 3.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 52 ARILDIGSGSGYLTACLA 69
+LDIG G GY T LA
Sbjct: 87 TALLDIGCGEGYYTHALA 104
>gnl|CDD|221074 pfam11312, DUF3115, Protein of unknown function (DUF3115). This
eukaryotic family of proteins has no known function.
Length = 284
Score = 28.0 bits (63), Expect = 3.5
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 163 NLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193
++T++D +AD +V + +R+ LY
Sbjct: 114 SVTLVD-IADWSNVVDRLATAIRSPWLYSIE 143
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 28.2 bits (62), Expect = 3.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE---------SSIKNIDKGNSE 101
G + +DIG G G L+ LA M V V+ +++A S+I+ + +
Sbjct: 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK 191
Query: 102 LLDQGR 107
L D+GR
Sbjct: 192 LADEGR 197
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18.
Also known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and
arylamides.
Length = 291
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 36 IHAQMLELLKDKIKPGARILDI 57
IH Q+ + + IKPG +L+I
Sbjct: 10 IHRQVRKYAQSLIKPGMTLLEI 31
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 27.5 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
K G R+LD+ GSG L L+ G +G+V G++ E
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE 109
>gnl|CDD|240312 PTZ00202, PTZ00202, tuzin; Provisional.
Length = 550
Score = 27.8 bits (62), Expect = 4.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM 71
H QM ELL++++K + SG ++A +A +
Sbjct: 180 HRQMRELLRERVKERDFRYVLTKYSGVVSASVALL 214
>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein
[ACP] reductase (BKR), subgroup 1, classical (c) SDR.
This subgroup includes Escherichia coli CFT073 FabG.
The Escherichai coli K12 BKR, FabG, belongs to a
different subgroup. BKR catalyzes the NADPH-dependent
reduction of ACP in the first reductive step of de novo
fatty acid synthesis (FAS). FAS consists of four
elongation steps, which are repeated to extend the
fatty acid chain through the addition of two-carbo
units from malonyl acyl-carrier protein (ACP):
condensation, reduction, dehydration, and a final
reduction. Type II FAS, typical of plants and many
bacteria, maintains these activities on discrete
polypeptides, while type I FAS utilizes one or two
multifunctional polypeptides. BKR resembles enoyl
reductase, which catalyzes the second reduction step in
FAS. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with
structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet) NAD(P)(H)
binding region and a structurally diverse C-terminal
region. Classical SDRs are typically about 250 residues
long, while extended SDRS are approximately 350
residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes have a 3-glycine N-terminal
NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs.
Extended SDRs have additional elements in the
C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P) binding motif and an altered
active site motif (YXXXN). Fungal type type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P) binding motif and missing or
unusual active site residues. Reactions catalyzed
within the SDR family include isomerization,
decarboxylation, epimerization, C=N bond reduction,
dehydratase activity, dehalogenation, Enoyl-CoA
reduction, and carbonyl-alcohol oxidoreduction. A
critical catalytic Tyr residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering), is often found in a conserved YXXXK
pattern. In addition to the Tyr and Lys, there is often
an upstream Ser (Ser-138, 15-PGDH numbering) and/or an
Asn (Asn-107, 15-PGDH numbering) or additional Ser,
contributing to the active site. Substrates for these
enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is
a proton relay involving the conserved Tyr-151 and
Lys-155, and well as Asn-111 (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is
not generally found among SDRs.
Length = 255
Score = 27.4 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 11 TRVVNEPYRIKSRQIGYGADISSPHIHAQMLE 42
T VV E R I + ADI H +L+
Sbjct: 40 TEVVAEVLAAGRRAIYFQADIGELSDHEALLD 71
>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family, including threonine dehydrogenase.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 27.6 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYG 80
I PG ++ +G G G L A + + GP+ + G
Sbjct: 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG 186
>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This
family consists of thiopurine S-methyltransferase
proteins from both eukaryotes and prokaryotes.
Thiopurine S-methyltransferase (TPMT) is a cytosolic
enzyme that catalyzes S-methylation of aromatic and
heterocyclic sulfhydryl compounds, including anticancer
and immunosuppressive thiopurines.
Length = 203
Score = 27.4 bits (61), Expect = 4.7
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
+ PG R+L G + ++A V GV E++E +++
Sbjct: 19 NLPPGLRVLVPLCGKALD---MVWLAEQGHFVVGV----EISELAVE 58
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 27.7 bits (62), Expect = 4.7
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELLDQGRVQ 109
ILD+G+GSG + LAY P V V+ + +AE +N +K E RV+
Sbjct: 117 HILDLGTGSGCIALALAY-EFPNAEVIAVDISPDALAVAE---ENAEKNQLE----HRVE 168
Query: 110 FV---VWNGKHGYEREAPYDIIHVSPSY 134
F+ ++ G DII +P Y
Sbjct: 169 FIQSNLFEPLAG----QKIDIIVSNPPY 192
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 27.7 bits (62), Expect = 5.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 AQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
++ E + ++ G R+LD+ G G LA +V+GVE E E++ +N
Sbjct: 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENA 335
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 27.1 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 KDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
K K IKPG +LD+G+ G + G +GRV V+
Sbjct: 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVD 64
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 27.2 bits (61), Expect = 5.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I PG +L+IG G G LT L A RV +E
Sbjct: 27 NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIE 59
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4. The
20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 74 PEGRVYGVEHVME 86
PEGR+Y VE+ ME
Sbjct: 12 PEGRLYQVEYAME 24
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 27.5 bits (62), Expect = 5.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 53 RILDIGSGSGYLTACLAYMAG---PEGRVYGV---EHVMELAESSIKN 94
RILD+ +GSG C+A PE V V + +AE +I+
Sbjct: 124 RILDLCTGSG----CIAIACAYAFPEAEVDAVDISPDALAVAEINIER 167
>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 27.6 bits (62), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 169 KLADGYTIVTTVVRGVRTNPLYRDRFQQK 197
KL +G +V V GV NPL+ RF Q+
Sbjct: 386 KLREGLALVALVGAGVTRNPLHCHRFYQQ 414
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 27.0 bits (61), Expect = 6.2
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 41 LELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
L +++ G R+LD+G G G L+ +A + V G+ + +E +I+
Sbjct: 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGI----DASEENIE 84
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 27.2 bits (61), Expect = 6.3
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G +L+IG G G LT LA A VY +E
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKRAKK---VYAIE 58
>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 27.2 bits (61), Expect = 6.4
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 21/131 (16%)
Query: 47 KIKPGARILDIGSGSGYLTAC--LAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSEL 102
K+KPG R+L G+ G T +A G V GV EL S G E+
Sbjct: 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAH--VTGVCSTRNAELVRSL------GADEV 191
Query: 103 LDQGRVQFVVWNGKHGYEREAPYDII--HVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFK 160
+D FV YD+I V S F++ + L L PGGR V VG
Sbjct: 192 IDYTTEDFVALTAGGE-----KYDVIFDAVGNSPFSLYRASLA-LKPGGRYVS-VGGGPS 244
Query: 161 GQNLTIIDKLA 171
G L ++
Sbjct: 245 GLLLVLLLLPL 255
>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase
fusion protein; Provisional.
Length = 423
Score = 27.4 bits (60), Expect = 6.8
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
++E + ++ R+ D+G+GSG + +A + P+ V +++ +++ K
Sbjct: 240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVA-LERPDAFV----RASDISPPALETARKN 294
Query: 99 NSELLDQGRVQFVVWNGKHG------YEREAPYDIIHVSPSYFTIPQKLLDQ 144
++L RV+F HG E +DII +P Y K L Q
Sbjct: 295 AADL--GARVEFA-----HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQ 339
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 27.0 bits (60), Expect = 6.8
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 10 FTRVVNEPYRIKS---RQIG--YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYL 64
F V P+ I S G Y + SS M+ + + + R+LD+ + G
Sbjct: 32 FFEVKESPFSIGSTPEYLFGYYYPQEASS------MIPPIALEPREDERVLDMAAAPGGK 85
Query: 65 TACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
T ++ + +G + E ++ I NI++
Sbjct: 86 TTQISQLMKNKGCIVANEISKSRTKALISNINR 118
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 26.9 bits (60), Expect = 7.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 52 ARILDIGSGSGYLTACLAYMAGPEGR 77
+LDIG G G L LA A +G
Sbjct: 62 LTLLDIGCGGGDLAIDLARWARRDGL 87
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 26.1 bits (58), Expect = 7.5
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 55 LDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112
++IG SG T LA GR+Y ++ + N+ K RV+ +
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDP--WPGAEAGANLRKAGLA----DRVRLL- 53
Query: 113 WNGKHGYEREA-------PYDIIHV--SPSY------FTIPQKLLDQLVPGGRMVM 153
G EA D++ + +Y + L L PGG +V
Sbjct: 54 ----RGDSLEALARLPDGSIDLLFIDGDHTYEAVLADLEL---WLPLLAPGGIIVF 102
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 26.5 bits (59), Expect = 8.1
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
+ + Q L +L I R L+IG +GY A +G++ + E
Sbjct: 22 PLSPMQISPEEGQFLSMLLKLIGA-KRTLEIGVFTGYSLLATALALPEDGKITACDIDPE 80
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GYEREAPYDIIHVSP---SYFTI 137
E + I K ++ F + + + +D I V +Y
Sbjct: 81 AYEIGLPFIQKAGVA----DKISFRLGDALPTLEELVKDKPLGEFDFIFVDADKSNYPNY 136
Query: 138 PQKLLDQLVPGGRMV 152
++LL+ + GG +
Sbjct: 137 YERLLELVKVGGLIA 151
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 26.6 bits (60), Expect = 8.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 48 IKPGARILDIGSGSG 62
+ G R+LD+GSG+G
Sbjct: 43 LPGGERVLDVGSGAG 57
>gnl|CDD|225671 COG3129, COG3129, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 292
Score = 26.7 bits (59), Expect = 8.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGS 61
H+ + RILDIG G+
Sbjct: 63 HLADLLASTSGQIPGKNIRILDIGVGA 89
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 26.5 bits (59), Expect = 9.1
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
+K G ++D+ +G G + +A + RVY VE ++ + +IK
Sbjct: 97 LVKEGEVVVDMFAGIGPFSIPIAKHSKA-KRVYAVELNPEAVKYLKENIK 145
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 26.6 bits (59), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 49 KPGARILDIGSGSGYLTACLA 69
+ R++D+G G G LT LA
Sbjct: 28 ERARRVVDLGCGPGNLTRYLA 48
>gnl|CDD|119192 pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent
methyltransferase. Members of this family are
S-adenosylmethionine-dependent methyltransferases from
gamma-proteobacterial species. The diversity in the
roles of methylation is matched by the almost
bewildering number of methyltransferase enzymes that
catalyze the methylation reaction. Although several
classes of methyltransferase enzymes are known, the
great majority of methylation reactions are catalyzed by
the S-adenosylmethionine-dependent methyltransferases.
Length = 286
Score = 26.8 bits (59), Expect = 9.4
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 27/84 (32%)
Query: 104 DQGRVQFVVWNGKHGYE---------REAPYDIIHVSPSYFT------------IPQKLL 142
D GRV F+ G++ + PYD++ + P F I ++L
Sbjct: 172 DLGRVSFL------GHDIFKSWGKIKKLGPYDLVIIDPPSFQKGSFALTKDYKKILRRLP 225
Query: 143 DQLVPGGRMVMPVGEPFKGQNLTI 166
+ LV GG ++ V P G + I
Sbjct: 226 ELLVEGGTVLACVNSPAVGPDFLI 249
>gnl|CDD|238070 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of
L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine
acetyltransferase (OAT) and similar proteins. DmpA is an
aminopeptidase that releases N-terminal D and L amino
acids from peptide substrates. This group represents one
of the rare aminopeptidases that are not metalloenzymes.
DmpA shows similarity in catalytic mechanism to
N-terminal nucleophile (Ntn) hydrolases, which are
enzymes that catalyze the cleavage of amide bonds
through the nucleophilic attack of the side chain of an
N-terminal serine, threonine, or cysteine. OAT catalyzes
the first and fifth steps in arginine biosynthesis,
coupling acetylation of glutamate with deacetylation of
N-acetylornithine, which allows recycling of the acetyl
group in the arginine biosynthetic pathway. The
superfamily also contains an enzyme, endo-type
6-aminohexanoate-oligomer hydrolase, that have been
shown to be involved in nylon degradation. Proteins in
this superfamily undergo autocatalytic cleavage of an
inactive precursor at the site immediately upstream to
the catalytic nucleophile.
Length = 286
Score = 26.6 bits (58), Expect = 9.8
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 144 QLVPGGRMVMPVGEPFKGQNL---TIIDKLADGYTIVTTVVRGVRTNPLYRDRF 194
+ +V G +GQ + D T++T R +P DR
Sbjct: 166 KGNGXLEIVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAELDRL 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.414
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,807,545
Number of extensions: 1025547
Number of successful extensions: 1239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1206
Number of HSP's successfully gapped: 125
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)