RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10572
(204 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 230 bits (589), Expect = 2e-77
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 31 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 87
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ VV +G+ GY
Sbjct: 88 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 147
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 148 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIKMKP 206
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 207 LMGVIYVPLTDKEKQWSRW 225
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 224 bits (572), Expect = 8e-75
Identities = 77/190 (40%), Positives = 108/190 (56%), Gaps = 9/190 (4%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 38 MKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 94
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V +G
Sbjct: 95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
+ GY APY+ IHV + P +L++QL GGR+++PVG Q + DK A+G
Sbjct: 155 RKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG-K 213
Query: 176 IVTTVVRGVR 185
+ T + GV
Sbjct: 214 VEMTRLMGVM 223
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 208 bits (531), Expect = 1e-68
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 14/200 (7%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR + + PY I +G IS+PH+HA L+ L + +KPG+R +D+GSG
Sbjct: 34 MLQVDRGKY---IKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSG 90
Query: 61 SGYLTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---- 112
SGYLT C+A V G+E V +L S++NI + ELL + +
Sbjct: 91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150
Query: 113 WNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 172
+ + +D IHV S +P+ L+D L G++++P+ E + Q L I K
Sbjct: 151 QVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYT-QVLYEITKKNG 209
Query: 173 GYTIVTTVVRGVRTNPLYRD 192
+ V L ++
Sbjct: 210 KII--KDRLFDVCFVSLKKN 227
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 196 bits (501), Expect = 6e-64
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGT 100
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSG+ A ++ + + VY +E + EL E + +N+++ V ++ +G G+
Sbjct: 101 GSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 153
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
+APYD+I V+ IP+ L++QL GG++++PVG Q L + K DG
Sbjct: 154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIK--IK 211
Query: 180 VVRGVRTNPL 189
GV PL
Sbjct: 212 NHGGVAFVPL 221
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 193 bits (493), Expect = 5e-63
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R+ F + Y +IGYG IS+ H+ M ELL +KPG ++L+IG+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
G GY A A + G +G V +E + ELAE + + + K L V +V +G GY
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVIVGDGTLGY 141
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+ + + IP+ L+ QL GG+++MPVG Q L + +K D I+
Sbjct: 142 EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDE--IIIK 197
Query: 180 VVRGVRTNPL 189
V PL
Sbjct: 198 DCGPVAFVPL 207
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 178 bits (453), Expect = 9e-56
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 1 MLRVDRKNFFTRVV-------NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
L + R+ F T+ + + S P + A +E + + G R
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSY-DDGEEYSTSSQPSLMALFMEWVG--LDKGMR 78
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
+L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ L V FV
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCG 133
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
+G +G +PYD+I V+ +P+ QL GGR+++P+ + + K D
Sbjct: 134 DGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDP 193
Query: 174 YTIVTTVVRGVR 185
+V R
Sbjct: 194 -YLVGNYKLETR 204
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 175 bits (446), Expect = 1e-55
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ L + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
+L+IG+G GY TA +A + +V VE ++ + K + N ++ ++
Sbjct: 74 VLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN-------NIKLILG 123
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
+G GYE E PYD + V + T+ K +QL GG M++P+G + Q L + K +
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKKGNS 182
Query: 174 YTIVTTVVRGVRTNPL 189
+ + V +
Sbjct: 183 PS--LENLGEVMFGRI 196
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 168 bits (429), Expect = 2e-53
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 15/190 (7%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+ V R+ F + + + IG G IS P++ A+M ELL+ + P +R+L+IG+
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY TA LA++ V VE + L + + + LD V +G G+
Sbjct: 87 GSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHGDGWQGW 138
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
+ AP+D I V+ + IP L+ QL GG +V+PVGE + Q L + + +
Sbjct: 139 QARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE--EHQYLKRVRRRGGEFI--ID 194
Query: 180 VVRGVRTNPL 189
V VR PL
Sbjct: 195 TVEAVRFVPL 204
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 72.5 bits (177), Expect = 2e-15
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 13/155 (8%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV E
Sbjct: 82 MKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR 139
Query: 85 MELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS--------PSYF 135
+ + + KN +S L + H A DI ++ +
Sbjct: 140 KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH 199
Query: 136 TIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKL 170
L GG + V Q + ++D +
Sbjct: 200 VTLPVFYPHLKHGGVCAVYV--VNITQVIELLDGI 232
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 70.9 bits (173), Expect = 4e-15
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ A + P + M+ LL + PG R+L+ G+GSG LT LA G +G V E
Sbjct: 73 MKRSATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR 130
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV-SPSYFTIPQKLLD 143
+ +N+ V+F + + EA YD + + + + +K
Sbjct: 131 PHHLAQAERNVRA----FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAAL 186
Query: 144 QLVPGGRMVMPVG 156
L P +V +
Sbjct: 187 ALKPDRFLVAYLP 199
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 70.4 bits (172), Expect = 5e-15
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ G I P A ++ I PG I++ G GSG LT LA + GPEGRV E
Sbjct: 68 DKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLL 142
+ A+ + +NI + RV + + G E E +I P + +
Sbjct: 126 IREDFAKLAWENIKWAGFD----DRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181
Query: 143 DQLVPGGRMVMPV 155
L PGG V
Sbjct: 182 KALKPGGFFVAYT 194
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 68.9 bits (168), Expect = 2e-14
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 89 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 146
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ 144
E A+ + N+ K RV V + G++ + + P + K +
Sbjct: 147 EEFAKLAESNLTKWG----LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEA 202
Query: 145 LVPGGRMVMPV 155
L GGR
Sbjct: 203 LKGGGRFATVC 213
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 68.5 bits (167), Expect = 3e-14
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
I P + L + R+L+ G+GSG L A L+ +AG VE
Sbjct: 68 FERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLLD 143
+ A+ ++K + G V+F + K E + V + +K+
Sbjct: 126 YKTAQKNLKKFNLGK-------NVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHK 178
Query: 144 QLVPGGRMVMPV 155
L+ G + +
Sbjct: 179 SLMEGAPVGFLL 190
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 65.3 bits (159), Expect = 1e-13
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
+ +K +K G ++D G+G TA LA + G GRV+G + + ++ K + N
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------------------QKL 141
RV + H + Y V F + K
Sbjct: 72 --LIDRVTLI--KDGH--QNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKA 125
Query: 142 LDQLVPGGRMV 152
++ LV GG +
Sbjct: 126 MELLVTGGIIT 136
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 61.7 bits (149), Expect = 7e-12
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E +
Sbjct: 79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADH 136
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV-SPSYFTIPQKLLDQLV 146
AE + +N+ + D + VV + + D + + + + + LV
Sbjct: 137 AEHARRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLV 194
Query: 147 PGGRMVMPVGEPFKGQNLTIIDKLAD 172
GG +++ V Q I++ L
Sbjct: 195 AGGVLMVYV--ATVTQLSRIVEALRA 218
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 59.3 bits (143), Expect = 7e-11
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-----------EHVMELAESSIKNID 96
GA +LD+G G+G + + G G+V GV ++V AE +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--QKLLDQ----LVPGGR 150
+ N L +G ++ + G ++ DI+ + L + L GG
Sbjct: 141 RSNVRFL-KGFIENLATAEPEGVP-DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGE 198
Query: 151 MVM 153
+
Sbjct: 199 LYF 201
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 57.0 bits (138), Expect = 2e-10
Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 28/136 (20%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
+ ++L+ +K G +LD+G+G+G+ L+ M G +G+VY ++ E+
Sbjct: 20 RLELFDPE-KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM-- 74
Query: 90 SSIKNIDKGNSELLDQG--RVQFVVWNGKHGYEREAPY-----DIIHVSPSY--FTIPQK 140
++ ++ G V+ + E + P D I ++ ++ + P K
Sbjct: 75 -----VNYAWEKVNKLGLKNVEVL-----KSEENKIPLPDNTVDFIFMAFTFHELSEPLK 124
Query: 141 LLDQ----LVPGGRMV 152
L++ P +
Sbjct: 125 FLEELKRVAKPFAYLA 140
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 57.9 bits (139), Expect = 2e-10
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESS 91
++ E + + G R + IG G LT L+++ G RV VE ++AE S
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS 162
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS---PSYFTIPQKLLDQLVPG 148
K I+ + V + + +D++ V+ + + + +
Sbjct: 163 RKVIEGLGVD-----GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTE 215
Query: 149 GRMVMPVGEPFKG 161
R++ +
Sbjct: 216 TRIIYRTYTGMRA 228
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 57.8 bits (139), Expect = 2e-10
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 23/179 (12%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI D + ++ ++PG IL++G GSG +++ + Y +G + VE
Sbjct: 92 QIISEIDA------SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER 143
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD 143
+ + ++ N+ + D G V+ + + +I P + QK+
Sbjct: 144 DEDNLKKAMDNLSE----FYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIAS 199
Query: 144 QLVPGGRMVMPVGEPFKGQNLTIIDKL-ADGYTIVTTV--------VRGVRTNPLYRDR 193
+ PG + P Q+ + L A G + TV VR T P D
Sbjct: 200 MMKPGSVATFYL--PNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASDDL 256
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 55.6 bits (134), Expect = 7e-10
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 30 DISSPHIHA--QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
P + + ILD+G+G+G L+A L PE V
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLM-EKYPEATFTLV------ 74
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPS-YFTIPQ 139
+ S K ++ + +V+++ + Y+ E YD++ H+ + +
Sbjct: 75 -DMSEKMLEIAKNRFRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYK 132
Query: 140 KLLDQLVPGGRMVM 153
+ L G +
Sbjct: 133 RSYSILKESGIFIN 146
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 55.7 bits (133), Expect = 1e-09
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 15 NEPYRIKSRQIGYG-----ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
++ + R+ YG +P L +LK + G +LD+G G+LT +A
Sbjct: 6 AAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIA 65
Query: 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129
GP R+ G++ L S+ +NI SE L G G E
Sbjct: 66 CKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124
Query: 130 VSPSYFTIPQKLLDQ 144
P+ T + +
Sbjct: 125 CFPASLTASRGPIAA 139
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 54.5 bits (131), Expect = 1e-09
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME--------LAESSIK 93
+ L + + + ++D G+G T A++AG +VY + + L++ I+
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 94 NID--KGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPG 148
N + E LD ++ ++N Y A +I + +K+LD+L G
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLG--YLPSADKSVITKPHTTLEAIEKILDRLEVG 128
Query: 149 GRMV 152
GR+
Sbjct: 129 GRLA 132
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 55.5 bits (133), Expect = 1e-09
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVM 85
A +++ H L+ ++PG + + G L Y A P ++ G+ +
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------- 138
+ A ++ + + YD++ + P
Sbjct: 157 DGATRLAAGHALAG-------QITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTE 208
Query: 139 --QKLLDQLVPGGRMVM 153
++ L PGG +V
Sbjct: 209 LYRRFWQALKPGGALVT 225
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 54.1 bits (130), Expect = 2e-09
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LEL+ + GA +LD+GS YL G E V +S++KN++
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDII 128
+ ++Q + NG +E +I
Sbjct: 65 K----EKIQVRLANGLAAFEETDQVSVI 88
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 53.4 bits (128), Expect = 4e-09
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L+ ++ + DIG+GS ++ + + P GR++ +E +
Sbjct: 23 ITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGF 79
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVP 147
N+ K V V G + D + + S + + +L
Sbjct: 80 IRDNLKK-----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKS 134
Query: 148 GGRMVMPV 155
G +V+
Sbjct: 135 EGVIVLNA 142
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 52.5 bits (126), Expect = 5e-09
Identities = 26/132 (19%), Positives = 38/132 (28%), Gaps = 21/132 (15%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ H+ A + L KP + DIG GSG + P+ E E E
Sbjct: 8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRER 64
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD--------IIHVSPSYFTIPQKLL 142
+ N L V A D I + +
Sbjct: 65 ILSNAIN-----LGVSDRIAV-----QQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAW 114
Query: 143 DQLVPGGRMVMP 154
+L GGR+V
Sbjct: 115 KRLPVGGRLVAN 126
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 53.4 bits (128), Expect = 5e-09
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
L+ + + + GAR+LD+GS YL G E V +S++KN+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLL----DQLVPGGRMVM 153
++ + NG +E D I + + +L D+L +V+
Sbjct: 71 T----SKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 52.4 bits (126), Expect = 8e-09
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
++ L + +D+G G+G +T LA RVY ++ E ++ N+ +
Sbjct: 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR 77
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVPGGRMVMP 154
V + + + DI V S + + + D+L PGGR+++
Sbjct: 78 ----HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 52.0 bits (124), Expect = 1e-08
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 21/136 (15%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EH 83
+ +S P L + P R+L+ G G G A A R
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFTIPQKL 141
+++LA ++ + WNGK AP+ +I ++ +L
Sbjct: 82 LLKLARANAPH-------------ADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRL 128
Query: 142 LDQLVPGGRMVMPVGE 157
+ P +
Sbjct: 129 PELAAPDAHFLYVGPR 144
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 51.8 bits (124), Expect = 1e-08
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 34 PHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
++ Q + + +K R++D+G G G L L + E ++ GV+ E +
Sbjct: 11 ISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIA 69
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYF-TIPQKLLD 143
+ +D+ R+Q + + +R YD H+ S + L +
Sbjct: 70 QERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 144 QLVPGG 149
P
Sbjct: 130 FAQPKI 135
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 52.0 bits (124), Expect = 2e-08
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ A +L+ L + +K G RIL +G SG + ++ + GP GR+YGVE + +
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ-------LVP 147
+ + + ++ + + + + + + P++ L
Sbjct: 122 VRD-------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRD 174
Query: 148 GGRMVMPV 155
GG M+M +
Sbjct: 175 GGYMLMAI 182
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 52.3 bits (125), Expect = 2e-08
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 33 SPHIHAQMLELLKD---KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
+ + + L + KI I+D G G GYL L + + G++
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS------ 55
Query: 90 SSIKNIDKGNSELLDQG-RVQFVVWNGKHGYEREAPYDIIHVSPS--YFTIPQKLLDQ-- 144
+ + +F+ + E YDI + T P+ +L +
Sbjct: 56 -GETLLAEARELFRLLPYDSEFLEGDA-TEIELNDKYDIAICHAFLLHMTTPETMLQKMI 113
Query: 145 --LVPGGRMVM 153
+ GG+++
Sbjct: 114 HSVKKGGKIIC 124
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 51.6 bits (123), Expect = 3e-08
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPG +IL+IG G G L+A LA G G V G+
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 50.7 bits (121), Expect = 5e-08
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LE + I RI DIGS YL C A E V +S+ K +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDII 128
++ NG E++ D I
Sbjct: 71 T----EQIDVRKGNGLAVIEKKDAIDTI 94
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 49.8 bits (119), Expect = 6e-08
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L + G + DIG GSG ++ GR +E + E+
Sbjct: 38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIEN 92
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD-IIHVSPSYFTIPQKLLDQLVPGG 149
KNID R++ V + + + +L + L PG
Sbjct: 93 IQKNIDT----YGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGT 148
Query: 150 RMVMPV 155
R+V
Sbjct: 149 RIVANA 154
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 50.3 bits (120), Expect = 7e-08
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
PGA++L+ G G G T LA P+ + ++ S ++++K G
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDI-------SPESLEKARENTEKNGI 86
Query: 107 -RVQFVVWNGKH-GYEREAPYDIIHVSPSYFTIPQK------LLDQLVPGGRMVM 153
V+F+ N +E ++ +D I V + L L PGG + +
Sbjct: 87 KNVKFLQANIFSLPFE-DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 49.5 bits (118), Expect = 1e-07
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-- 104
RI D+G+G+G +A + V E E+AE + ++++ ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSAR 91
Query: 105 ----QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135
+ V + + + ++P Y
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYN 126
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 47.6 bits (113), Expect = 6e-07
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
SP + + L + D + + I DIG G+G T LA G+V G+ +
Sbjct: 30 SPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGL-------DFLS 79
Query: 93 KNIDKGNSELLDQG---RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP-QKLLDQ---- 144
ID N G RV +V + R D+I + + I ++ L++
Sbjct: 80 GFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY 139
Query: 145 LVPGGRMVM 153
L GG + +
Sbjct: 140 LKKGGYLAV 148
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 47.5 bits (113), Expect = 6e-07
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 23/130 (17%)
Query: 41 LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
L +KPG RILD+GSGSG + A G G+ +++ +
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGI----DMSSLFTAQAKRR 78
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVS--PSYFTIPQKLLDQLVPGG 149
EL RV F+ + GY D+ + L L PGG
Sbjct: 79 AEELGVSERVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAE---ELLAQSLKPGG 134
Query: 150 RMVMPVGEPF 159
M+ +GEP+
Sbjct: 135 IML--IGEPY 142
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 47.5 bits (113), Expect = 6e-07
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
+ + + + + A+I DIG G+G T LA G++ G+ + I+
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGI-------DLFPDFIEIF 85
Query: 99 NSELLDQG---RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP-QKLLDQ----LVPGGR 150
N + RV+ + + + + D+I + + I ++ +++ L GG
Sbjct: 86 NENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGF 145
Query: 151 MVM 153
+ +
Sbjct: 146 IAV 148
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+L+LL +PG ILD+G G+G LT + A V G +++ I+K
Sbjct: 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKI---AQSGAEVLGT-------DNAATMIEK 94
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRM 151
+ F V + ++ + + P D + + + + L GGR
Sbjct: 95 ARQNY---PHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRF 150
Query: 152 VMPVGEPF 159
V G
Sbjct: 151 VAEFGGKG 158
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 46.3 bits (110), Expect = 1e-06
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 27/129 (20%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESS 91
+ +A LLK K +LDIG SG L A + RV G+E E A+
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGAL---GAAIKENGTRVSGIEAFPEAAEQAKEK 73
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLDQ 144
+ ++ G+ E +D E +D + H+ + + +K+
Sbjct: 74 LDHVVLGDIETMDMP-------------YEEEQFDCVIFGDVLEHL-FDPWAVIEKVKPY 119
Query: 145 LVPGGRMVM 153
+ G ++
Sbjct: 120 IKQNGVILA 128
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 46.0 bits (110), Expect = 2e-06
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++L LL +P ++ G G G + A RV ++ + E +
Sbjct: 40 VDRQTGRLLYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR 98
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV------SPSYFTIPQKLLDQLV 146
+ + RV+ V + + DI+ + +++ L
Sbjct: 99 RMLHDNGLI----DRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVL---ERMNRCLA 151
Query: 147 PGG 149
Sbjct: 152 KNA 154
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108
+I+D+ SG+G + L+ + ++ GVE LA+ + +++ ++L DQ +
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVA--YNQLEDQIEI 103
Query: 109 QFVVWNGKHGYEREAPYDIIHVSPSYFTIPQK 140
+ DI+ +P YF P
Sbjct: 104 IEYDLKKITDLIPKERADIVTCNPPYFATPDT 135
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 44.8 bits (106), Expect = 3e-06
Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
+++ L+ + +LD+G+ +G +T L V + + A S + +
Sbjct: 13 LMDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTD-LNIRALESHRGGNLVR 67
Query: 100 SELLD---QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
++LL Q V VV+N Y + II + + +D + G ++ +
Sbjct: 68 ADLLCSINQESVDVVVFN--PPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIE 125
Query: 157 EPFKGQNLTIIDKLAD-GYTIVTTVVR 182
+ ++ +L + GY VR
Sbjct: 126 A---NRPKEVLARLEERGYGTRILKVR 149
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 45.4 bits (107), Expect = 3e-06
Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
+ LL+ +++P RIL +G G+ L+ L ++ G V V++ S +
Sbjct: 29 FSSFRALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDY-------SSVVVA 79
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
+ ++++ + + A +D++ + + D V V
Sbjct: 80 AMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139
Query: 157 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYYTEL 203
+ + ++ + +T+ RT + + +
Sbjct: 140 QVLSEVSRVLVPG--GRFISMTSAAPHFRTRHYAQAYYGWSLRHATY 184
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 21/134 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ +S+ + Q++ + + + +++G +GY A +G++ ++ E
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNG-------KHGYEREAPYDIIHV------SPSYF 135
E + I K E ++ F+ + G E E YD V Y
Sbjct: 109 EIGLPFIRKAGVE----HKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYH 164
Query: 136 TIPQKLLDQLVPGG 149
++L+ + GG
Sbjct: 165 ---ERLMKLVKVGG 175
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 44.9 bits (106), Expect = 3e-06
Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+++ Q L + +K +++D+G G G L + L E ++ GV+ + E
Sbjct: 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLER 68
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLD 143
+ + + + R+ + + +R + YD H+ + +K+L
Sbjct: 69 AKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLF 128
Query: 144 QLVPGGRMVM 153
+ +++
Sbjct: 129 EFTRPQTVIV 138
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.9 bits (106), Expect = 4e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + +K A +LD+G G GY T L+ + GV
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGV 81
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 44.4 bits (105), Expect = 6e-06
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 32/136 (23%)
Query: 33 SPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+ H H L L+ + + R+LDIG+G+G+ + GV+ E+
Sbjct: 2 AHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEM--- 55
Query: 91 SIKNIDKGNSELLDQG--RVQFVVWNGKHGYEREA-PYD-------IIHVSPSYFTIPQK 140
++ +S ++G V+F E+ P+ + +F+ +K
Sbjct: 56 ----VEVASSFAQEKGVENVRFQQGTA------ESLPFPDDSFDIITCRYAAHHFSDVRK 105
Query: 141 LLDQ----LVPGGRMV 152
+ + L GR +
Sbjct: 106 AVREVARVLKQDGRFL 121
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 44.3 bits (104), Expect = 7e-06
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ L+ P R L G G G+ + MA PE V G+ +++ES++
Sbjct: 49 QGRATPLIVHLVDTSSLPLGRALVPGCGGGHD---VVAMASPERFVVGL----DISESAL 101
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQ 144
++ FV + + +D+I + I + + +
Sbjct: 102 AKANETYGSSPKAEYFSFVKEDV-FTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYEL 160
Query: 145 LVPGGRMVM---PVGEPFKG 161
L P G ++ P+ + G
Sbjct: 161 LKPDGELITLMYPITDHVGG 180
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 44.3 bits (104), Expect = 8e-06
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + +++ + ++D+G G G T +A P ++ G +
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 43.5 bits (103), Expect = 9e-06
Identities = 16/122 (13%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
+ L + I+D G G+G+ L A ++Y + ++ + ++
Sbjct: 8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62
Query: 96 -DKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGR 150
+ + + V F+++ + H Q ++ + L GR
Sbjct: 63 ITLSDPKEIPDNSVDFILFA-----------NSFH----DMDDKQHVISEVKRILKDDGR 107
Query: 151 MV 152
++
Sbjct: 108 VI 109
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 44.8 bits (105), Expect = 9e-06
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME-LAE 89
P + Q +E I+ + ++D G GSG L L + GV+ + LA
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLAR 761
Query: 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPS-YFTIPQKL 141
++ K N E + + R DI H+ +K+
Sbjct: 762 AAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKV 821
Query: 142 LDQLVPGG 149
L P
Sbjct: 822 LSLFHPKL 829
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 44.0 bits (104), Expect = 9e-06
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 22 SRQIGYGADISSPHIHAQ----MLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPE 75
+ GY D + + + + ++ G R+LD+G G G LA
Sbjct: 27 NLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD-- 84
Query: 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135
RV G+ ++ + + + RV F + +A +D + S
Sbjct: 85 VRVTGI----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLH 140
Query: 136 TIPQK--LLDQ----LVPGGRMV---MPVGEPFKGQNLTIIDKLADGY 174
+P + L + L PGG + + P +G +D G
Sbjct: 141 HMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG 188
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 43.8 bits (104), Expect = 1e-05
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 18/121 (14%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+ L L P ARIL+IG+ GY +A A PE + +E E + K++
Sbjct: 43 MESLLHLLKMAAP-ARILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKA 100
Query: 98 GNSELLDQGRVQFVVWNGKH---GYEREAPYDIIHV------SPSYFTIPQKLLDQLVPG 148
E R++ + + E +D++ + +F + PG
Sbjct: 101 LGLE----SRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFF---DMYSPMVRPG 153
Query: 149 G 149
G
Sbjct: 154 G 154
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 43.7 bits (103), Expect = 1e-05
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 28/128 (21%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNI 95
L K R+LDIG G G L GV+ +++ E +
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVV 86
Query: 96 DKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVS-PSYFTIPQKLLDQLVP 147
E L + D + H+ F + ++
Sbjct: 87 KSDAIEYLKS--------------LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKY 132
Query: 148 GGRMVMPV 155
+V+
Sbjct: 133 SSYIVIES 140
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 43.3 bits (102), Expect = 1e-05
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 31/134 (23%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE--HVM-ELAESSIK 93
+ L ++ GA+IL++G G+GY + AG + V + + A
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAML-AAGFD--VDATDGSPELAAEA----- 81
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQL 145
S L + + H + YD + +P + + L
Sbjct: 82 ------SRRLGRPVRTMLF----HQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRAL 131
Query: 146 VPGGRMV--MPVGE 157
PGG GE
Sbjct: 132 KPGGLFYASYKSGE 145
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 43.1 bits (102), Expect = 2e-05
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
D AQ+L L I+ + LD+G+ +GY LA +GRV E +
Sbjct: 49 GDSMMTCEQAQLLANLARLIQA-KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHV------SPSYFT 136
E + +E ++ + +D+ V +Y+
Sbjct: 108 ELGRPLWRQAEAE----HKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYY- 162
Query: 137 IPQKLLDQLVPGG 149
++ L L PGG
Sbjct: 163 --ERCLQLLRPGG 173
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 42.9 bits (101), Expect = 2e-05
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 22/115 (19%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ L+IG +G T LA P R+ + + + I +
Sbjct: 50 GAVSNGLEIGCAAGAFTEKLA----PHCKRLTVI-------DVMPRAIGRACQRTKRWSH 98
Query: 108 VQFVVWNGKHGYEREAPYDII-------HV-SPSYF-TIPQKLLDQLVPGGRMVM 153
+ + + + +D+I ++ + T ++ L PGG +V
Sbjct: 99 ISWAATDI-LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 43.0 bits (101), Expect = 2e-05
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 25/157 (15%)
Query: 29 ADISSPHIHAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
P++ + L+ +L++ SG+GY T +++G RV ++ E
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT---RHLSGLADRVTALDGSAE 79
Query: 87 -LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ- 144
+AE+ +D V+F + + + +D + + +P +
Sbjct: 80 MIAEAGRHGLD----------NVEFRQQDL-FDWTPDRQWDAVFFAHWLAHVPDDRFEAF 128
Query: 145 -------LVPGGRMVMPVGEPFKGQNLTIIDKLADGY 174
+ PGG + + + D +
Sbjct: 129 WESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 43.1 bits (102), Expect = 2e-05
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 21/134 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+++ Q L +L I ++IG +GY A +G++ ++ E
Sbjct: 59 NIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNG-------KHGYEREAPYDIIHV------SPSYF 135
E + I K + ++ F + YD I V +Y
Sbjct: 118 ELGLPVIKKAGVD----HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH 173
Query: 136 TIPQKLLDQLVPGG 149
++L+D + GG
Sbjct: 174 ---KRLIDLVKVGG 184
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 43.0 bits (102), Expect = 2e-05
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
Q L LL + RIL+IG+ GY T +A +G++ +E A
Sbjct: 43 PAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREAPYDIIHV------SPSYFTIPQ 139
+ + +N+ + RV +D+I + +P Y +
Sbjct: 102 QVARENLQLAGVD----QRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYL---R 154
Query: 140 KLLDQLVPGG 149
L PG
Sbjct: 155 WALRYSRPGT 164
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ AQ +++L + ++L++G+ +GY ++ +G+V +
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 89 ESSIKNIDK 97
+ + +
Sbjct: 99 KHAHPYWRE 107
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 42.7 bits (101), Expect = 2e-05
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 23/140 (16%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ Q L +L RI++IG+ +GY + C A +G++ + E
Sbjct: 40 ANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 89 ESSIKNIDKGN------------SELLDQ-GRVQFVVWNGKHGYEREAPYDIIHV----- 130
+ K + E L + + D+ +
Sbjct: 99 NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158
Query: 131 -SPSYFTIPQKLLDQLVPGG 149
P+Y+ +L L PGG
Sbjct: 159 NYPNYY---PLILKLLKPGG 175
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 42.7 bits (100), Expect = 2e-05
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ L + I+ G ++L +G+ SG + ++ + G+ YGVE
Sbjct: 66 LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 42.7 bits (100), Expect = 3e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
D + L + P ++D G+G T L+ P RV G+
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS-QFFP--RVIGL 84
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 42.2 bits (100), Expect = 4e-05
Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ + AQ+L LL ++ +++DIG+ +GY + +G + + +
Sbjct: 44 YAMQTAPEQAQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST 102
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHV------SPSYFT 136
+ + +K ++ + K + YD+I++ + Y+
Sbjct: 103 ALAKEYWEKAGLS----DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYY- 157
Query: 137 IPQKLLDQLVPGG 149
++ L L GG
Sbjct: 158 --EESLKLLREGG 168
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 42.2 bits (99), Expect = 4e-05
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
Y + +H M+ +PG +L++GS G + + + VE E
Sbjct: 20 YAYNFDFDVMHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVEASEE 75
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVVWNGK-HGYEREAPYDII-------HVSPSYFTIP 138
+ + G + + + YD I H+ +
Sbjct: 76 AISHAQGRLKDG-----------ITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLK 124
Query: 139 QKLLDQLVPGGRMVMPV 155
+ D L GGR+ +
Sbjct: 125 RINDDWLAEGGRLFLVC 141
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 41.7 bits (98), Expect = 5e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 23/128 (17%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
+L + + R+LD+G G G+L +A GV + +D
Sbjct: 44 ILLAILGR--QPERVLDLGCGEGWLL---RALADRGIEAVGV-------DGDRTLVDAAR 91
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI----PQKLLDQ----LVPGGRM 151
+ + + + YD+I + F + +LL LVPGG +
Sbjct: 92 AAGAGEVHLASYAQLAEAKVPVGKDYDLIC---ANFALLHQDIIELLSAMRTLLVPGGAL 148
Query: 152 VMPVGEPF 159
V+ P+
Sbjct: 149 VIQTLHPW 156
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 41.4 bits (98), Expect = 5e-05
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ L+LL IL+IG+ GY T LA GRV +E + A
Sbjct: 38 PAHDVSPTQGKFLQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGKH-----GYEREAPYDIIHV------SPSYFTI 137
+ + NI++ N RV+ E+ P+D I + +P+YF
Sbjct: 97 DIARSNIERANLN----DRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYF-- 150
Query: 138 PQKLLDQLVPGG 149
+ L PG
Sbjct: 151 -EWALKLSRPGT 161
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 42.0 bits (98), Expect = 6e-05
Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTAC-LAYMAGPEGRVYGVEHVMELAESSI 92
+ ++ ++ K +IL IG G+G + L+ + V V+E + I
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 93 KNIDKGNSELLDQGRVQFVV--------WNGKHGYEREAPYDIIHVSPSYFTIP------ 138
+ ++ + V+F + + +D IH+ + +
Sbjct: 96 AKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATL 155
Query: 139 QKLLDQLVPGGRMVM 153
+ L +M++
Sbjct: 156 KFFHSLLGTNAKMLI 170
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 41.8 bits (98), Expect = 6e-05
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
EL ++ A+ LD+G+G G L G + + +A K
Sbjct: 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCL----NIAPVQNK 119
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLDQLV 146
++ N++ + + + YD I H P + Q+ L
Sbjct: 120 RNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLK 178
Query: 147 PGGRMVM 153
P G M +
Sbjct: 179 PRGVMAI 185
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 41.3 bits (97), Expect = 6e-05
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 31/140 (22%)
Query: 30 DISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHV 84
I+ + E + ++ I G +DIGSG G L+ LA + + + +H+
Sbjct: 22 KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHM 78
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY-----DIIHVSPSYFTIP- 138
E+A KNI N R+Q V G P D+I S F
Sbjct: 79 NEIAL---KNIADANLN----DRIQIV-----QGDVHNIPIEDNYADLIVSRGSVFFWED 126
Query: 139 -QKLLDQ----LVPGGRMVM 153
+ L GG+ +
Sbjct: 127 VATAFREIYRILKSGGKTYI 146
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 41.0 bits (96), Expect = 7e-05
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
+ +LE + +K +L+ G G+G LT + VYG+ E S +
Sbjct: 34 YEDILEDVVNK--SFGNVLEFGVGTGNLT---NKLLLAGRTVYGI-------EPSREMRM 81
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQLVPG 148
+L + +E D I + ++ + K L G
Sbjct: 82 IAKEKL--PKEFSITEGDFLS-FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138
Query: 149 GRMV 152
G++V
Sbjct: 139 GKIV 142
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 40.6 bits (96), Expect = 9e-05
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 25/148 (16%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
+ ++ + + D+G+GSG L A A+ G V + + + + ++ +N
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATD-ISDESMTAAEENAAL- 105
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDI----IHVSPSYFTIPQKLLDQLVPGGRMVM- 153
N G + + + +D+ I IPQ L L G+++
Sbjct: 106 N------GIYDIALQKTSLLADVDGKFDLIVANILAEILLDLIPQ-LDSHLNEDGQVIFS 158
Query: 154 --------PVGEPFKGQNLTIIDKLADG 173
+ + + I K+ G
Sbjct: 159 GIDYLQLPKIEQALAENSFQIDLKMRAG 186
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 41.0 bits (96), Expect = 9e-05
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
I ++ LL + G+ I DIG+G+G + L A VY VE + + +
Sbjct: 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVAL---ANQGLFVYAVEPSIVMRQ 70
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 41.4 bits (97), Expect = 9e-05
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGNSELLDQGR 107
I+D+G G+G + L P+ +V V+ +A SS N++ E LD R
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVD-ESPMAVASSRLNVETNMPEALD--R 276
Query: 108 VQFVVWNGKHGYEREAPYDII------HVSPSY-FTIPQKLLDQ----LVPGGRMVM 153
+F++ N G E ++ + H + + ++ L G + +
Sbjct: 277 CEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 40.8 bits (96), Expect = 1e-04
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 19/144 (13%)
Query: 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEG 76
R + + G + + Q+L L + I +G + +
Sbjct: 26 REDAAEFG---LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT 82
Query: 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV---- 130
+ ++ E + + RV+F++ R Y ++
Sbjct: 83 TLTCIDPESEHQRQAKALFREAG---YSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP 139
Query: 131 --SPSYFTIPQKLLDQLVPGGRMV 152
+ L GG +V
Sbjct: 140 MDLKALV---DAAWPLLRRGGALV 160
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A + AQ L LL ++L+IG GY +A P+G++ +
Sbjct: 52 APMQISPEQAQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 89 ESSIKNIDK 97
+ K K
Sbjct: 111 AIAKKYWQK 119
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 41.0 bits (96), Expect = 1e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L + + D+G G G T L + G+
Sbjct: 24 DLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRY-GVNVITGI 63
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 40.9 bits (96), Expect = 1e-04
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 44/167 (26%)
Query: 33 SPHIHAQ------MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EH 83
+ IHA+ ++++ +K +LD+ +G G++ A +V E
Sbjct: 16 TSQIHAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTED 70
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA-PYD-------IIHVSPSYF 135
++++A + I+ V++V + E P+ ++ +F
Sbjct: 71 ILKVARAFIEGNGHQQ--------VEYVQGDA------EQMPFTDERFHIVTCRIAAHHF 116
Query: 136 TIPQKLLDQ----LVPGGRMVM----PVGEPFKGQNLTIIDKLADGY 174
P + + L GG++++ ++K D
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYS 163
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 41.1 bits (96), Expect = 1e-04
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGA---DISSPHIHAQMLELLKDKIKPGARILDIGSGS 61
+ F R++ Y + A D +S + + E L + G ++LD+G+G
Sbjct: 185 LWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGY 244
Query: 62 GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER 121
G LT LA M V GVE + S K ++ + + Q + +
Sbjct: 245 GALTLPLARMG---AEVVGVEDDLASVLSLQKGLEA------NALKAQALHSDVDEALTE 295
Query: 122 EAPYDIIHVSPSY-------FTIPQKLLDQ----LVPGGRMVM 153
EA +DII +P + + Q ++ L PGG +
Sbjct: 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 40.3 bits (94), Expect = 1e-04
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-------EHVMELAE 89
+ LL +K ++LD+ G G + L V GV E A+
Sbjct: 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAK 81
Query: 90 SSIKNID--KGNSELLD 104
S N++ G++ L
Sbjct: 82 SRESNVEFIVGDARKLS 98
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 40.4 bits (94), Expect = 1e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 33 SPHIHAQM-LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELA 88
A +E+ D G ++D G+G+G L AC +Y+ G E V + +E A
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETA 90
Query: 89 ESSIKNIDKGNSELLD-QGRVQFVVWN 114
+ + ++ +++ + G+ + N
Sbjct: 91 KRNCGGVNFMVADVSEISGKYDTWIMN 117
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 40.4 bits (95), Expect = 1e-04
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 26/127 (20%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
+L L ++LD+G G+G L+ A + P+ R+ + V A E+S
Sbjct: 188 LLSTLTPH--TKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCD-VSAPAVEASRAT---- 239
Query: 99 NSELLDQGRVQFVVWNGKHGYER-EAPYDII------HVS-PSYFTIPQKLLDQ----LV 146
L V+ V+ + + + +D+I H + Q L+ L
Sbjct: 240 ----LAANGVEGEVFAS-NVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLN 294
Query: 147 PGGRMVM 153
GG + +
Sbjct: 295 SGGELRI 301
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 39.8 bits (93), Expect = 2e-04
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 24/127 (18%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID-- 96
L+ GA+ILD G G G + L+ G V G +++ A+
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLS-KQGH--DVLGTDLDPILIDYAKQDFPEARWV 94
Query: 97 KGNSELLDQGRVQF-VVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGRM 151
G+ + F ++ + +++ + L L GR
Sbjct: 95 VGDLSVDQISETDFDLIV---------SAGNVMGFLAE--DGREPALANIHRALGADGRA 143
Query: 152 VMPVGEP 158
V+ G
Sbjct: 144 VIGFGAG 150
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ A ++ LK+ IKPG +L +G SG + ++ + G EG+++G+E
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 40.5 bits (95), Expect = 2e-04
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 21/139 (15%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
P + +L L +PG R+LD +GSG + A GP VY + + + +
Sbjct: 189 PVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII--------------HVSPSYFTIPQ 139
++F+ + +H D I + Y+ +
Sbjct: 247 AALASGLS-----WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLR 301
Query: 140 KLLDQLVPGGRMVMPVGEP 158
L L PGGR+ + P
Sbjct: 302 GALALLPPGGRVALLTLRP 320
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 40.2 bits (93), Expect = 2e-04
Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 20/158 (12%)
Query: 10 FTRVVNEPYRIKSRQIG----YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ V +P ++ + + YG +S + AQM++ +K + +D+GSG G +
Sbjct: 133 YNHSVTDPEKLNNYEPFSPEVYGE--TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVV 188
Query: 66 ACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSEL-LDQGRVQFVV--WNGKHGY 119
+A + YGVE + AE+ + K + +
Sbjct: 189 LQVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 247
Query: 120 EREAPYDIIHVSPSYFTIP-----QKLLDQLVPGGRMV 152
ER A +I V+ F ++ + GGR+V
Sbjct: 248 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 39.8 bits (93), Expect = 3e-04
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 27/134 (20%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV----EHVMELAESSI 92
H + L++ +K R+LD+G G+G + ++ V V E + E +
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKWS---LFLQERGFEVVLVDPSKEMLEVAREKGV 97
Query: 93 KNIDKGNSELL--DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LV 146
KN+ + +E L G + V+ A D++ Y K + LV
Sbjct: 98 KNVVEAKAEDLPFPSGAFEAVL----------ALGDVLS----YVENKDKAFSEIRRVLV 143
Query: 147 PGGRMVMPVGEPFK 160
P G ++ V +
Sbjct: 144 PDGLLIATVDNFYT 157
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 39.9 bits (93), Expect = 3e-04
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 35 HIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
+ ++ L++++ +LDIG G GY T A A PE +G+ ++++ +IK
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-DALPEITTFGL----DVSKVAIK 123
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQK---LLDQLVPGGR 150
K +V F V + + D I + P K L + PGG
Sbjct: 124 AAAKRY------PQVTFCVASSHRLPFSDTSMDAII---RIYA-PCKAEELARVVKPGGW 173
Query: 151 MV 152
++
Sbjct: 174 VI 175
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 39.9 bits (94), Expect = 3e-04
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 55/176 (31%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM-------- 85
AQ ++L DK +KPG +LDIG G G + + V +V+
Sbjct: 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTT---MRRAV----ERFDV-NVIGLTLSKNQ 125
Query: 86 -ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII-------HVS----P 132
E + +ID +V G+ + P D I H
Sbjct: 126 HARCEQVLASID-----TNRSRQVLL------QGWEDFAEPVDRIVSIEAFEHFGHENYD 174
Query: 133 SYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNP 188
+F ++ + + GRM + Q+ R
Sbjct: 175 DFF---KRCFNIMPADGRMTV--------QSSVSYHPYEMAARGKKLSFETARFIK 219
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 39.1 bits (92), Expect = 3e-04
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A + L + ++D+G GSG +T +A VY ++++ E + +N+ K
Sbjct: 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK 79
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 39.2 bits (92), Expect = 3e-04
Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
++E + ILD+G G G + LA + + A + + +NI
Sbjct: 44 LVENVVVD--KDDDILDLGCGYGVIGIALA-DEVKS--TTMAD-INRRAIKLAKENIKLN 97
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSY---FTIPQKLLDQ----LVPGGR 150
N LD ++ V + + + Y+ I ++ P + +++++ L G
Sbjct: 98 N---LDNYDIRVVHSDLYENVK-DRKYNKI-ITNPPIRAGKEVLHRIIEEGKELLKDNGE 152
Query: 151 MVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 182
+ + V + +G ++ + D + V TV
Sbjct: 153 IWV-VIQTKQGAK-SLAKYMKDVFGNVETVTI 182
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 39.2 bits (92), Expect = 3e-04
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
L+ L ++PG ++LD+G+GSG L A A G G+ GV+ + + + N +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKR- 164
Query: 99 NSELLDQGRVQFVVWNGKHG-YEREAPYDI----IHVSPSYFTIPQKLLDQLVPGGRMVM 153
N V+ G P+D+ ++ P+ + LVPGGR ++
Sbjct: 165 N-------GVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPR-YREALVPGGRALL 216
Query: 154 ---------PVGEPFKGQNLTIIDKLADG 173
V E G +++ A+G
Sbjct: 217 TGILKDRAPLVREAMAGAGFRPLEEAAEG 245
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 39.3 bits (91), Expect = 4e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPGA++L +G+ SG + ++ + GP+G VY VE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ A+ LK + PG +L++G+G+GY L P + GVE
Sbjct: 21 YVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 39.0 bits (91), Expect = 4e-04
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIK 93
+ ++ + ++ ILDIG GSG ++ +A V G+ + LAE
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGIDINSEAIRLAE---T 70
Query: 94 NIDKGNSELLDQGRVQFVV 112
G+ +F V
Sbjct: 71 AARSPGLNQKTGGKAEFKV 89
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 38.8 bits (91), Expect = 5e-04
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +++ L IL+IG+ GY + A + + V +E + + +
Sbjct: 55 VDRLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAK 112
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV------SPSYFTIPQKLLDQ 144
+N+ + E +V+ + N +E + YD+I + S +F +
Sbjct: 113 QNLATYHFE----NQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFF---EIYTPL 165
Query: 145 LVPGG 149
L G
Sbjct: 166 LKHQG 170
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 38.3 bits (89), Expect = 6e-04
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 19/112 (16%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQG-R 107
P +IL + G G LA G V V + S + K ++G +
Sbjct: 29 PQGKILCLAEGEGRNACFLA----SLGYEVTAV-------DQSSVGLAKAKQLAQEKGVK 77
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVM 153
+ V N ++ I + K+ L PGG ++
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 39.0 bits (90), Expect = 6e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
S + ML D+++ G +LD+G+GSG L A AG
Sbjct: 33 SFLYHQKDML---SDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSA-QAGAR- 87
Query: 77 RVYGVEH--VMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116
+VY VE + + A + +K + + + +G V+ + K
Sbjct: 88 KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEK 129
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 38.6 bits (90), Expect = 6e-04
Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 26 GYGADISSPHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+G + S ++L D ++ +++LDIGSG G + G +G++
Sbjct: 30 IFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAH--THGIDI- 86
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HV-SPSYFT 136
++ N + ++ F + E +D+I + +
Sbjct: 87 ------CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNK 140
Query: 137 IPQKLLDQLVPGGRMVM 153
+ QK L P G +++
Sbjct: 141 LFQKCYKWLKPTGTLLI 157
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 38.7 bits (91), Expect = 6e-04
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 45/139 (32%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV--------M 85
AQ+ ++L K ++PG +LD+G G G + Y V V
Sbjct: 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGAT---MMRAV----EKYDVNVVGLTLSKNQA 100
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII-------HVS----PS 133
+ + + + ++ G+ + + P D I H +
Sbjct: 101 NHVQQLVA-------NSENLRSKRVLL----AGWEQFDEPVDRIVSIGAFEHFGHERYDA 149
Query: 134 YFTIPQKLLDQLVPGGRMV 152
+F L G M+
Sbjct: 150 FF---SLAHRLLPADGVML 165
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 38.1 bits (88), Expect = 0.001
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y + IH +ML KDKI+ +LD+G G+G L + A
Sbjct: 29 YFSSYGHYGIHEEML---KDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGIL-SMFAAK 84
Query: 72 AGPEGRVYGVEH--VMELAESSIKNIDKGNSELLDQGRVQFVV 112
AG + +V GV+ ++ A I+ ++ L +G+++ V
Sbjct: 85 AGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH 126
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 37.9 bits (88), Expect = 0.001
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGV---E 82
G IS+ ++E ILD+GSG+G T LA G ++ G+
Sbjct: 20 LGTVISAEDPDRVLIEPWATG--VDGVILDVGSGTGRWTGHLA----SLGHQIEGLEPAT 73
Query: 83 HVMELAESSIKNID--KGNSELLDQGRVQF-VVWNGKHGYEREAPYDIIHVSPSYFTIPQ 139
++ELA + ++ G L ++ + A Y +IH+ P +P
Sbjct: 74 RLVELARQTHPSVTFHHGTITDLSDSPKRWAGLL---------AWYSLIHMGPG--ELPD 122
Query: 140 ---KLLDQLVPGGRMVM 153
L + GG ++M
Sbjct: 123 ALVALRMAVEDGGGLLM 139
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.0 bits (88), Expect = 0.001
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
A + L++G G+G + L R ++
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIALPL---IARGYRYIALD 68
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 37.5 bits (88), Expect = 0.001
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
+ + LK G R++D+G+GSG + +A A P V V + +A
Sbjct: 20 EAIRFLKRM-PSGTRVIDVGTGSGCIAVSIAL-ACPGVSVTAVDLSMDALAVA------- 70
Query: 96 DKGNSELLDQGRVQFVV----WNGKHGYEREAPYDIIHVS-PSYFTIPQKLLDQLVP 147
+ N+E V + ER P+ I VS P Y IP +DQL P
Sbjct: 71 -RRNAERF-GAVVDWAAADGIEWLIERAERGRPWHAI-VSNPPY--IPTGEIDQLEP 122
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 37.6 bits (87), Expect = 0.001
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
I P ++ + L+ ++ +LD G+G + G + YG+
Sbjct: 6 IRQPQLY-RFLKYC-NESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGI 52
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 37.6 bits (87), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
++ ++L D +LD+G G G+ A +V G+
Sbjct: 33 WHELKKMLPDF--NQKTVLDLGCGFGWHCIYAA--EHGAKKVLGI 73
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ Q+++ + + P + +L++G+ GY +A + P R+ +E + A
Sbjct: 40 MNVGDAKGQIMDAVIREYSP-SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI 98
Query: 91 SIKNIDK 97
+ + ++
Sbjct: 99 TQQMLNF 105
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 37.0 bits (85), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IK ++IL +G+ +G + +A + +G VY +E
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIE 105
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 36.7 bits (85), Expect = 0.002
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 25/128 (19%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNI 95
H+++LE +K + + LD+G G+G + LA G V + + +I
Sbjct: 21 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDK-------NAMSI 67
Query: 96 DKGNSELLDQG--RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ--------L 145
+ + V + + + YD I + + K +
Sbjct: 68 ANVERIKSIENLDNLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCT 126
Query: 146 VPGGRMVM 153
PGG ++
Sbjct: 127 KPGGYNLI 134
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ +L + G RI+D+G G G+ V G+
Sbjct: 35 LRAMLPEV--GGLRIVDLGCGFGWFCRWAH--EHGASYVLGL 72
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 36.7 bits (86), Expect = 0.003
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 29/107 (27%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
LEL++ + DIG+GSG + +A + V+ +E+A
Sbjct: 114 LALELIRKY--GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIA------- 162
Query: 96 DKGNSELLD-QGRVQFVVWNGKHG------YEREAPYDIIHVS-PSY 134
+ N+E R G E+ A ++I +S P Y
Sbjct: 163 -RKNAERHGVSDRFFVR-----KGEFLEPFKEKFASIEMI-LSNPPY 202
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 36.0 bits (84), Expect = 0.004
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 52/187 (27%)
Query: 42 ELL--KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID 96
+ K ++ G L+IG+G + A +A +V E E A +NI+
Sbjct: 45 RYIFLKTFLRGGEVALEIGTGHTAMMALMAE-KFFNCKVTATEVDEEFFEYAR---RNIE 100
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQ---------------- 139
+ NS R+ G E +D+I S P Y +
Sbjct: 101 RNNSN----VRLVKSNGGIIKGVV-EGTFDVI-FSAPPY--YDKPLGRVLTEREAIGGGK 152
Query: 140 -------KLLDQ----LVPGGRMVMPVGEPFKGQNLTIIDKLAD-GYTIVTTVVRGVRTN 187
KLL++ L PGG++ + + +++ + + G + + V+ ++
Sbjct: 153 YGEEFSVKLLEEAFDHLNPGGKVALYL-----PDKEKLLNVIKERGIKLGYS-VKDIKFK 206
Query: 188 PLYRDRF 194
R R
Sbjct: 207 VGTRWRH 213
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 35.9 bits (83), Expect = 0.004
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNID--KGNSE 101
+ P R ++IG G+G L GVE + E+A + + KG +E
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARK--RGVFVLKGTAE 94
Query: 102 LL 103
L
Sbjct: 95 NL 96
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 36.2 bits (84), Expect = 0.005
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 28/144 (19%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMA---GPEGRVYGVE----------H 83
A +LE + K K ILD G+ LT + + + GV+
Sbjct: 119 AYLLEKVIQK-KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALV 177
Query: 84 VMELAESSIKNIDKGNS-ELLDQGRVQFVVWN----GKHGYEREAPYDIIHVSPSYFT-- 136
+L + + + L V V+ + E +++ F
Sbjct: 178 GADLQRQKM-TLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHF 236
Query: 137 --IPQKLLDQLVPGGRM--VMPVG 156
I ++ + PGG + ++P
Sbjct: 237 LFI-EQGMRYTKPGGYLFFLVPDA 259
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 35.8 bits (82), Expect = 0.005
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
G + I + +R LD G+G G +T L + +
Sbjct: 70 GMD-HVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT-----TDLL- 122
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS--PSYFTIP----- 138
E +++ EL +F++ + + YD+I + Y T
Sbjct: 123 ---EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKF 179
Query: 139 -QKLLDQLVPGGRMVM 153
+ L P G +
Sbjct: 180 FKHCQQALTPNGYIFF 195
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 35.9 bits (82), Expect = 0.006
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
I+ G +++D+ G G L A + +E E A + N LL
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAV-----AARHNIPLLLNEG 142
Query: 107 -RVQFVVWNGKH--GYEREAPYDIIHVSPSY 134
V + + K + D I+V P+
Sbjct: 143 KDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 35.7 bits (83), Expect = 0.007
Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 54/147 (36%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV--------M 85
AQ +L DK ++PG +LDIG G G + + Y V +
Sbjct: 56 AQYAKRKLALDKLNLEPGMTLLDIGCGWGST---MRHAV----AEYDVNVIGLTLSENQY 108
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDIIHVS------------- 131
++ +D R + + G+ E + P D I VS
Sbjct: 109 AHDKAMFDEVDS-------PRRKEVRI----QGWEEFDEPVDRI-VSLGAFEHFADGAGD 156
Query: 132 ------PSYFTIPQKLLDQLVPGGRMV 152
++F +K + GRM+
Sbjct: 157 AGFERYDTFF---KKFYNLTPDDGRML 180
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 35.8 bits (82), Expect = 0.007
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 7 KNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA 66
V+N + + + + Y ++ P+ + +++D G+ G A
Sbjct: 187 VQTLYAVLN--FHL-TCEPEYYHEVERPYST-LYFRSGLLRFSDSEKMVDCGASIGESLA 242
Query: 67 CLA-YMAGPEGRVYGVE 82
L G RV+ +E
Sbjct: 243 GLIGVTKGKFERVWMIE 259
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 35.5 bits (81), Expect = 0.009
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 44/154 (28%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y M+ +D ++ +LD+G GSG L + A
Sbjct: 123 YFQFYGYLSQQQNMM---QDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL-SFFAAQ 178
Query: 72 AGPEGRVYGVEH--VMELAESSIKN--------IDKGNSELLD-QGRVQFVV--WNGKHG 118
AG ++Y VE + + AE +K+ + G E + +V ++ G
Sbjct: 179 AGAR-KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML 237
Query: 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMV 152
+ +H L P G M
Sbjct: 238 FNERMLESYLHA-----------KKYLKPSGNMF 260
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 35.1 bits (81), Expect = 0.009
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 25/136 (18%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGN 99
+ + ++++PG RI DIG G+G T LA + V GV + S + ++
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLA-----DHYEVTGV-------DLSEEMLEIAQ 71
Query: 100 SELLDQG-RVQFVVWNGKHGYEREAPYDII---HVSPSYFTIPQKLL-------DQLVPG 148
+ ++ V F V + + E P D I S +Y + L G
Sbjct: 72 EKAMETNRHVDFWVQDMRE-LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG 130
Query: 149 GRMVMPVGEPFKGQNL 164
G+++ V P+K + L
Sbjct: 131 GKLLFDVHSPYKMETL 146
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 35.2 bits (81), Expect = 0.009
Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 24/128 (18%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
+++ L P ++D G G G R +G V + S+ D
Sbjct: 105 AEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAH-------RRFGS-RVEGVTLSA-AQAD 154
Query: 97 KGNSELLDQG---RVQFVVWNGKHGYEREAPYDII----HVS----PSYFTIPQKLLDQL 145
GN + V+ V N + F + L
Sbjct: 155 FGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLF---SEHSRFL 211
Query: 146 VPGGRMVM 153
GGR V
Sbjct: 212 KVGGRYVT 219
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 35.1 bits (80), Expect = 0.010
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 32/169 (18%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
L++ K G +LD+G G G L Y G YGV ++AE SI + +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDL--LKYERAGIGEYYGV----DIAEVSINDARVRARNM 110
Query: 103 LDQGRVQFVVWNG-KHGYEREAPYDIIH---VSPSYFTIPQKLL-------DQLVPGGRM 151
+ +V F + + +D+I F+ + L L PGG
Sbjct: 111 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 170
Query: 152 VMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYY 200
+M V I+ +G +N Y+ ++ +
Sbjct: 171 IMTV---------------PSRDVILERYKQGRMSNDFYKIELEKMEDV 204
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 34.3 bits (78), Expect = 0.014
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 33 SPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
+ +++L L G + D+G+G+G L+ + G + V VE E +
Sbjct: 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GAK-EVICVEVDKEAVDVL 88
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI 137
I+N+ + +G+ + + E + DI+ ++P + +
Sbjct: 89 IENLGE------FKGKFKVFI---GDVSEFNSRVDIVIMNPPFGSQ 125
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 34.6 bits (79), Expect = 0.014
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
+ ++D G G T A RV ++ + N +
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGI----AD 127
Query: 107 RVQFVVWNGKHGYEREAPYDIIHVSP 132
+++F+ + D++ +SP
Sbjct: 128 KIEFICGDFLL-LASFLKADVVFLSP 152
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 34.2 bits (78), Expect = 0.018
Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 36/150 (24%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y M+ +D ++ +LD+G GSG L + A
Sbjct: 15 YFQFYGYLSQQQNMM---QDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL-SFFAAQ 70
Query: 72 AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-HGYEREAPYDII-- 128
AG ++Y VE +A+ + + N R+ + GK DII
Sbjct: 71 AGAR-KIYAVEA-STMAQHAEVLVKSNN----LTDRIVVI--PGKVEEVSLPEQVDIIIS 122
Query: 129 ------HVSPSYFTIPQKLLDQLVPGGRMV 152
+ L P G M
Sbjct: 123 EPMGYMLFNERMLESYLHAKKYLKPSGNMF 152
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 34.3 bits (78), Expect = 0.018
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 22/97 (22%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
+ IH ++L KD+++ +LD+GSG+G L A AG
Sbjct: 36 AHFGIHEELL---KDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGIL-CMFAAKAGAR- 90
Query: 77 RVYGVE--HVMELAESSIKNIDKGNSELLDQGRVQFV 111
+V G+E + + A +K + + +G+V+ V
Sbjct: 91 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 127
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 34.0 bits (78), Expect = 0.019
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSE 101
+D + R+LD+ G+G T LA G V G+ + + + +
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELA----ERGYEVVGL-------DLHEEMLRVARRK 82
Query: 102 LLDQG-RVQFVVWNGKHGYEREAPYDII---HVSPSYFTIP--QKLLDQ----LVPGGRM 151
++ +++F+ + + +D + + YF +KL + L PGG
Sbjct: 83 AKERNLKIEFLQGDVLE-IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF 141
Query: 152 VMPVGEPFKGQN 163
+ F G
Sbjct: 142 ITDFPCWFYGGR 153
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 34.0 bits (77), Expect = 0.022
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 44 LKDKIKPGARI-LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
L + I R+ +D+G+G G LA + G++ V E K K +
Sbjct: 17 LTEIIGQFDRVHIDLGTGDGRNIYKLA-INDQNTFYIGIDPVKENLFDISK---KIIKKP 72
Query: 103 LDQGR--VQFVVWNGKH-GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRM 151
G V FV+ + +E + D I + F L + P +
Sbjct: 73 SKGGLSNVVFVIAAAESLPFELKNIADSISIL---FPWGTLLEYVIKPNRDI 121
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 33.6 bits (77), Expect = 0.030
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLA 69
+L++ + + +LD+ G+G
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFT 59
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 32.9 bits (76), Expect = 0.045
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 26/104 (25%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
Q L L ++ RILD+G+G+G + LA P+ + V + LA
Sbjct: 101 QALARLPEQ---PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLA------- 149
Query: 96 DKGNSELLDQGRVQFVV--WNGKHGYE--REAPYDIIHVS-PSY 134
+ N++ L + + W + + +I VS P Y
Sbjct: 150 -QRNAQHLAIKNIHILQSDW-----FSALAGQQFAMI-VSNPPY 186
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.4 bits (76), Expect = 0.048
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
H Q+ + + IKPG +++I
Sbjct: 174 EAHRQVRKYVMSWIKPGMTMIEI 196
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 33.1 bits (75), Expect = 0.053
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
IH +ML +D ++ +LD+G G+G L + A G +
Sbjct: 8 DHYGIHEEML---QDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGIL-SMFAAKHGAK- 62
Query: 77 RVYGVEHVMELAESSIKNIDKGN 99
V GV+ + E + + ++
Sbjct: 63 HVIGVDM-SSIIEMAKELVELNG 84
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 32.9 bits (74), Expect = 0.057
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
P+ + + + + +K G +D+GSG G A G +G E + + ++ +I
Sbjct: 227 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLTI 283
Query: 93 KNIDKGNSELLDQG----------RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---- 138
++ G + FV N + D+I V+ F
Sbjct: 284 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQC--DVILVNNFLFDEDLNKK 341
Query: 139 -QKLLDQLVPGGRMV 152
+K+L G +++
Sbjct: 342 VEKILQTAKVGCKII 356
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 32.8 bits (74), Expect = 0.060
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 5/132 (3%)
Query: 7 KNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA 66
+ F ++ P + + H ++ R +DIG+G+ +
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYI--HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYP 81
Query: 67 CLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE--AP 124
L E + KN+++ N L + + E
Sbjct: 82 LLGA-TLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 140
Query: 125 YDIIHVSPSYFT 136
YD +P +F
Sbjct: 141 YDFCMCNPPFFA 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.061
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 86/214 (40%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG + P+ + +L+D ++ G S M + +
Sbjct: 306 IGVRCYEAYPNT-SLPPSILEDSLENN-----EGVPS--------PMLS----ISNLTQ- 346
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNG-KH----GY-------------------- 119
E ++K NS L +V+ + NG K+ G
Sbjct: 347 ----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 120 --------ERE-----------APYDIIHVSPSYFTIPQKLLDQ-------LVPGGRMVM 153
ER+ +P+ H S L+++ + +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPF---H-SH-LLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 154 PVGEPFKGQNL-----TIIDKLADGYTIVTTVVR 182
PV + F G +L +I +++ D I+ V+
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVD--CIIRLPVK 489
Score = 31.9 bits (72), Expect = 0.16
Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 64/219 (29%)
Query: 7 KNFFTRVVNEPYR-------------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+ F +++ EP + + +GY + + P Q ++L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-------L 86
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
L Y+ G + + H LA ++ D + + ++
Sbjct: 87 CLT------EFEN--CYLEGND--I----HA--LAAKLLQENDT------TLVKTKELIK 124
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQK--LLDQLVPGGRMVMPVGEPFKGQ--NLTIIDK 169
N Y ++ F L + G ++ + F GQ ++
Sbjct: 125 N----Y-----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---FGGQGNTDDYFEE 172
Query: 170 LADGYTIVTTVVR------GVRTNPLYRDRFQQKKYYTE 202
L D Y +V + L R +K +T+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Score = 31.2 bits (70), Expect = 0.28
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 27/107 (25%)
Query: 22 SRQIGYGADI--SSP---HIHAQMLELLKDKIKPGARILDI-------------GSGSGY 63
S++ G G D+ +S + + KD G ILDI G
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 64 LTACLAYMA-----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105
+ Y A +G++ + E+ E S + LL
Sbjct: 1684 IRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 32.7 bits (75), Expect = 0.063
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELA 88
S + LE++ R+LDIG +G + T C+ Y E + + +E+
Sbjct: 161 HFYSDQSFGKALEIVFSH--HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMM 218
Query: 89 ESSIKNIDKGNSELLDQGRVQFV 111
+ R+
Sbjct: 219 RKQTAGLSGS-------ERIHGH 234
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 32.1 bits (72), Expect = 0.076
Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 20/137 (14%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ + + + PGAR+L G + L +G V G E E
Sbjct: 5 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWL---SGQGYHVVGAELSEAAVERYF 61
Query: 93 KNIDK-------GNSELLDQGRVQFVVWNG-KHGYEREAPYDII-------HVSPSYFTI 137
+ G+ ++ ++ + +
Sbjct: 62 TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 121
Query: 138 PQKLLDQLV-PGGRMVM 153
+ L+ L+ ++
Sbjct: 122 YVQHLEALMPQACSGLL 138
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 32.2 bits (73), Expect = 0.092
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
Y I ++ E +L++ +G G LT
Sbjct: 59 YRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL 101
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 32.1 bits (73), Expect = 0.100
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLA 69
L++ A +LD+ G+G LA
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLA 69
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 31.8 bits (73), Expect = 0.10
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
I ++ E +PG +L++
Sbjct: 11 EIAKKVREKAIKLARPGMLLLEL 33
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 32.1 bits (73), Expect = 0.11
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
H + ++ ++PG +L+I
Sbjct: 55 EAHRRARYRVQSIVRPGITLLEI 77
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.9 bits (72), Expect = 0.11
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 29/128 (22%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSI-----KNIDKGNS 100
+ R+LD+ G+G + L EG V V + ++ + + ++
Sbjct: 54 RQHGCHRVLDVACGTGVDSIMLV----EEGFSVTSV----DASDKMLKYALKERWNRRKE 105
Query: 101 ELLDQGRVQFVVW-NGKHGYEREAPYDII---HVSPSYFTIPQKLLDQ-----------L 145
D+ ++ W +D + S ++ + + +
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165
Query: 146 VPGGRMVM 153
PGG +V+
Sbjct: 166 RPGGLLVI 173
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 31.9 bits (72), Expect = 0.13
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + M+ L + G R+L+ G G R GVE
Sbjct: 25 PEVVDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE 71
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 31.6 bits (71), Expect = 0.14
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 21/152 (13%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ G +D+G+ G T L VY V++ +A+S L+D G+
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNG-PMAQS-----------LMDTGQ 253
Query: 108 VQFVVWNGKHGYEREAPYDII--HVSPSYFTIPQKLLDQLVPG--GRMVMPVGEPFKGQN 163
V ++ +G + + + + + LV G + + P K +
Sbjct: 254 VTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRY 313
Query: 164 LTIIDKLADGYTIVTT--VVRGVRTNPLYRDR 193
+ LA + + ++ LY DR
Sbjct: 314 EEVSHNLAYIQAQLDEHGINAQIQARQLYHDR 345
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 31.6 bits (72), Expect = 0.14
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 24/132 (18%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGN 99
+E + LD+ G+G LT L P+ + V + S + + +
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLC----PKFKNTWAV-------DLSQEMLSEAE 76
Query: 100 SELLDQG-RVQFVVWNGKHGYEREAPYDIIHV---SPSYFTIPQKLL-------DQLVPG 148
++ QG + + + + +D+I S +Y L + L G
Sbjct: 77 NKFRSQGLKPRLACQDISN-LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135
Query: 149 GRMVMPVGEPFK 160
G + + +K
Sbjct: 136 GVFIFDINSYYK 147
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 31.4 bits (71), Expect = 0.17
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 5 DRKNFFT---RVVNEPYRIKSRQIGYGADISSPHIH----AQMLELL-KDKIKPGARILD 56
++ F + E R +R+ A++ L + ++ R+LD
Sbjct: 28 GKQEFERYKVSDITEVDRTAARRYLKEGRTDVGISVSRGAAKIRWLHERGYLRITGRVLD 87
Query: 57 IGSGSG---YLTACLAYMAGPEGRVYGVE 82
+G G G Y A + +G G+E
Sbjct: 88 LGCGRGGWSYYAAAQKEVMSVKGYTLGIE 116
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 31.5 bits (72), Expect = 0.17
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
P I++IG G + L + R G E +A + + +
Sbjct: 104 LTGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFEPSSGVAAKAREKGIR 151
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 31.4 bits (70), Expect = 0.21
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
LE L K+ ++ D S SG + Y + + E +N N
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN 101
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD---QLVPGGRMVM 153
+ + R + +E + +V F P ++ + G ++
Sbjct: 102 ---IPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILS 155
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 31.0 bits (69), Expect = 0.21
Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 10/151 (6%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIK 93
+I + L + + + + D+G G T + + P ++ G+++ + E +
Sbjct: 43 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 102
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPS--YFTIPQKLLDQLVPGGRM 151
+I +SE+ + + + P + K+ + L P G +
Sbjct: 103 HIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 162
Query: 152 VMPVGEPFKGQNLTIID-------KLADGYT 175
V+ F+ + + K A+GY+
Sbjct: 163 VLSEKFRFEDTKINHLLIDLHHQFKRANGYS 193
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 30.9 bits (70), Expect = 0.24
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
I ++L L + G +L +
Sbjct: 33 DIANRVLRSLVEASSSGVSVLSL 55
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 30.7 bits (69), Expect = 0.24
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 20/116 (17%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
KI ++LD+G G G + Y++ V +H + +I N +
Sbjct: 117 KIISPCKVLDLGCGQGRNS---LYLSLLGYDVTSWDH-------NENSIAFLNETKEKEN 166
Query: 107 -RVQFVVWNGKHGYEREAPYDII-------HVSPSYF-TIPQKLLDQLVPGGRMVM 153
+ +++ + YD I ++ +I + + + GG ++
Sbjct: 167 LNISTALYDINA-ANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 30.5 bits (68), Expect = 0.33
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG--NSELLD 104
K ++D +G G LA + RV +E +A + +G ++E+
Sbjct: 85 KGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGG 141
Query: 105 QGRVQFVVWNGKHG---YEREAPYDIIHVSPSY 134
+ + + + + ++++ P +
Sbjct: 142 WLQERLQLIHASSLTALTDITPRPQVVYLDPMF 174
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 30.0 bits (68), Expect = 0.50
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 53 RILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
++D+ G G YL L G+++ + + A +I GRV+F
Sbjct: 182 TVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIH-------AHDLGGRVEFF 234
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G R +D+G+G G L+ + PE ++
Sbjct: 62 PYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFTLLD 96
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.4 bits (65), Expect = 0.68
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 17 PYRIKSRQIGYGADISSP--HIHAQMLELLKD----------KIKPGARILDIGSGSGYL 64
+ ++ G IH+ E + IK + ILD G G L
Sbjct: 4 NWDKLLKKYNQGQLSIEDLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPL 63
Query: 65 TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
L E +Y H ++ + I + +L + +F+
Sbjct: 64 A--LYQWNENEKIIY---HAYDIDRAEIAFLSSIIGKLKTTIKYRFL 105
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 29.5 bits (66), Expect = 0.82
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELL--KDKIKPGARILDIG 58
+++ R E I SR++G ++ + ++ ++ LL + G +I
Sbjct: 256 QTEAEQERILARY--EESIIYSRRVG---NLYTGSLYLGLISLLENATTLTAGNQIGLFS 310
Query: 59 SGSG 62
GSG
Sbjct: 311 YGSG 314
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 37 HAQML-ELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
AQ++ +L+ + ++LDI + G + A + E V+E+A+ + +
Sbjct: 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENAR- 209
Query: 95 IDKGNSELLDQGRVQFV 111
R +
Sbjct: 210 ------IQGVASRYHTI 220
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.9 bits (65), Expect = 1.2
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ L IKP R++++ S
Sbjct: 117 TRDVCTELLPLIKPQGRVVNVSSIMSVRA 145
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 29.1 bits (64), Expect = 1.2
Identities = 22/169 (13%), Positives = 41/169 (24%), Gaps = 46/169 (27%)
Query: 34 PHIHAQML-----ELLKDKIKPGARILDIGSGSG-YLTACLAYMAGP-EGRVYGVE---H 83
++L +L + I D +GSG L A +++ +
Sbjct: 300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETL 359
Query: 84 VMELA----------------ESSIKNIDKGNSELLDQGRVQFVVWN------------- 114
+EL +I D + D V VV N
Sbjct: 360 FLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIK 419
Query: 115 -----GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRM--VMPVG 156
P + + + + + G + +MP
Sbjct: 420 RKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 28.6 bits (63), Expect = 1.3
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 11/101 (10%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELL 103
+ D +G G + LA + V E V L I+
Sbjct: 80 NHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQD 136
Query: 104 DQGRVQFV----VWNGKHGYEREAPYDIIHVSPSYFTIPQK 140
R+ + + DI+++ P + +K
Sbjct: 137 TAARINLHFGNAAEQMPALVKTQGKPDIVYLDP-MYPERRK 176
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 28.3 bits (64), Expect = 1.5
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 32 SSPHIHAQMLELLKDKIKPGAR 53
+P + ML ++D++ +
Sbjct: 245 GNPRVVKAMLANMRDELSDALK 266
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal,
antibiotic resistance, aminoglycoside,
S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces
SP}
Length = 218
Score = 28.1 bits (62), Expect = 1.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +LD+G+G G +A P V ++
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVA-RQNPSRLVVALD 58
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 28.4 bits (62), Expect = 1.8
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ LE ++ K K +LD+G G G L + G ++ ++A+ S+K
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGD--LLKWKKGRINKLVCT----DIADVSVKQ 72
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.4 bits (63), Expect = 1.9
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 31 ISSPHIHAQMLELL----KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
+ +P ++ ++ + L K ++LD+ G G +A P + +E
Sbjct: 35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSS 93
Query: 87 LAESSIKNIDKGNSELLDQ 105
L + + ++L +
Sbjct: 94 LYKFLNAKFEGSPLQILKR 112
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 27.9 bits (63), Expect = 1.9
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDI------GSGSGYLTACLAYMAGPEGRVYG 80
Y ++ +E+ K ++ P +L G G+ L AG +
Sbjct: 101 YQKGVT--------IEVQKRQLGPHDVVLLHDDVLATG-GTLLAAIELCETAGVKPENIY 151
Query: 81 VEHVMELAE 89
+ + E+
Sbjct: 152 INVLYEIEA 160
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 28.1 bits (61), Expect = 2.6
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 30/140 (21%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---------EHVMELA 88
L+ L + I +G G G + + E +++E
Sbjct: 397 VGALKDLGADGRKTVVIYLLGGGRGPIGTK-ILKSEREYNNTFRQGQESLKVKLYIVEKN 455
Query: 89 ESSIKNIDKGNSELLDQGRVQFV-----VWNGKHGYEREAPYDII-----------HVSP 132
++I + N RV + G DII +SP
Sbjct: 456 PNAIVTLKYMNVRTWK-RRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSP 514
Query: 133 SYFTIPQKLLDQLVPGGRMV 152
L P +
Sbjct: 515 ECLDGVTGF---LKPTTISI 531
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 27.7 bits (62), Expect = 2.6
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++P +L++G G+G +T L A +V E
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACE 57
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 27.8 bits (61), Expect = 2.7
Identities = 22/179 (12%), Positives = 45/179 (25%), Gaps = 22/179 (12%)
Query: 39 QMLELLKDKIKPGARILDIGSGSG-----YLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
++L I G+G Y +A + + + E
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDII---------HVSPSYFTIPQKLL 142
I + E ++II Y T+ L
Sbjct: 97 GIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS 156
Query: 143 DQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYYT 201
+ GG++++ + K + KL D T + N + ++ +
Sbjct: 157 ELTASGGKVLITTMDGDK------LSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVV 209
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 27.6 bits (62), Expect = 2.7
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPE--GRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108
G +D+G GSG LT + A P G + E + +A ++ S LL RV
Sbjct: 168 GRSFVDVGGGSGELTKAIL-QAEPSARGVMLDREGSLGVARDNL-------SSLLAGERV 219
Query: 109 QFV 111
V
Sbjct: 220 SLV 222
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 27.7 bits (62), Expect = 2.8
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 53 RILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
+++D+G G G A L + + + + ++L + +E R++ +
Sbjct: 193 KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA-------AEKGVADRMRGI 245
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 27.5 bits (60), Expect = 2.9
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNID 96
M L G R+L++G G + + P + +E V +
Sbjct: 50 MHALAAAASSKGGRVLEVGFGMAIAASKVQ--EAPIDEHWIIECNDGVFQRLRDWAP--R 105
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128
+ + + +G + V + +D I
Sbjct: 106 QTHKVIPLKGLWEDVA-----PTLPDGHFDGI 132
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.4 bits (61), Expect = 3.0
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ R+LD+G+G+G+ L + PE + V+
Sbjct: 78 WQGPLRVLDLGTGAGFPGLPLK-IVRPELELVLVD 111
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 27.6 bits (61), Expect = 3.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 45 KDKIKPGARILDIGSGSG---YLTACLAYMAGPEGRVYGV 81
+ +K R++D+G G G Y A ++G +G G
Sbjct: 69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 27.1 bits (60), Expect = 3.2
Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 11/93 (11%)
Query: 74 PEGRVYGVEHVMELAESS--IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI-IHV 130
+ H M L S I G D+G V N G + + +
Sbjct: 51 ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN-YLGEAVSHDASLEVAI 109
Query: 131 SPSYFTIPQKLLDQLVPGGRMVM-----PVGEP 158
F Q D +V G + P G P
Sbjct: 110 LRDDFR--QNPSDVMVAVGEPAVMECQPPRGHP 140
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 27.1 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 48 IKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVE 82
+ G R+++IG G G LT +A +A P ++ VE
Sbjct: 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A
phosphatase, motor protein, structur protein, membrane
protein; 1.70A {Plasmodium falciparum 3D7}
Length = 342
Score = 27.2 bits (59), Expect = 3.9
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130
LL V + + E D+ H+
Sbjct: 219 PLLKDAEVDLYISGHDNNMEVIEDNDMAHI 248
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 4.2
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAY-MAGPE-GRVYGVE 82
GA I Q++ +K G I I + + TA + P G+ G+
Sbjct: 1179 EAQGAGI-------QIIMQADLALKMGVPIYGIVAMAA--TATDKIGRSVPAPGK--GIL 1227
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131
SS+K S L+ + + + + ++ +
Sbjct: 1228 TTAREHHSSVKYA----SPNLNMKYRKRQLVTREAQIKDWVENELEALK 1272
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 26.9 bits (60), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
KIK +L+IG G+G LT L +A +V ++
Sbjct: 39 KIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITID 71
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 26.7 bits (60), Expect = 4.4
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 32 SSPHIHAQMLELLKDKIKPG 51
+ +H +L++ K ++
Sbjct: 244 GNKALHDFILQVAKKYMEVA 263
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 4.7
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC 67
GAD S P +++ K K G R++ + + Y A
Sbjct: 506 GADASLPDQL-TPEQVMDGKKKIGKRVVILNAD-TYFMAP 543
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 26.9 bits (59), Expect = 4.8
Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 27/144 (18%)
Query: 26 GYGADISSPHIHAQMLELLK-----DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80
GYG ISS I++ L + + LD G+G G +T L V
Sbjct: 51 GYG-HISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLF--REVDM 107
Query: 81 V---EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI 137
V E + A++ + K G F YD+I + +
Sbjct: 108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS--------YDVIWIQWVIGHL 159
Query: 138 P--------QKLLDQLVPGGRMVM 153
++ L P G +V+
Sbjct: 160 TDQHLAEFLRRCKGSLRPNGIIVI 183
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG;
2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB:
2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Length = 424
Score = 27.0 bits (59), Expect = 5.3
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 102 LLDQGRVQFVVWNGKHGYEREAP 124
+ +V V H YER
Sbjct: 302 WFVKYKVDVVFAGHVHAYERSER 324
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 26.5 bits (59), Expect = 5.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I D+G+G+G+ + + + P V V+
Sbjct: 67 DFNQVNTICDVGAGAGFPSLPIK-ICFPHLHVTIVD 101
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 26.6 bits (59), Expect = 6.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
D S + + + E + K I DIG G G L L+ A PE + G+E
Sbjct: 31 DWSKLYPYYKNAENGQMTKKV--TIADIGCGFGGLMIDLS-PAFPEDLILGME 80
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 26.4 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +L+IG G G LT LA A +VY +E
Sbjct: 47 NLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIE 79
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.5 bits (59), Expect = 6.3
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
PG+ ++D + G T+ LA + +G+++ +
Sbjct: 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFD 134
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 26.4 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+K + +IG+G G+LT LA ++ +V +E
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIE 58
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 26.2 bits (58), Expect = 6.8
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 17 PYRIKSRQIG-------YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
Y +K ++ + A ++ H + + + + DIG G G L L+
Sbjct: 6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS 65
Query: 70 YMAGPEGRVYGVE 82
+ P+ + G+E
Sbjct: 66 PLF-PDTLILGLE 77
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.2 bits (58), Expect = 7.2
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 6 RKNFFTRVVNEPYRIKSRQIGYGAD---ISSP-HIHAQMLELLKDKIKPGARILDIGSGS 61
+ +++ + I AD +S P ++ + +E LK + + D+ S
Sbjct: 43 ASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTSVK 102
Query: 62 GY-LTACLAY----------MAGPE 75
L L M G +
Sbjct: 103 REPLAKMLEVHTGAVLGLHPMFGAD 127
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 26.3 bits (58), Expect = 7.2
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKD-KIKPGARILDIGSGSG 62
E +R +G +I + ++ ++ LL++ ++ G I GSG
Sbjct: 264 EDAVDYNRYVG---NIYTGSLYLSLISLLENRDLQAGETIGLFSYGSG 308
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 26.2 bits (58), Expect = 7.4
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
D+ P + Q +++++ + G + TA +++ P R +GV+H++
Sbjct: 86 RDVIRPSLTVQAVDVVRGHLAAGDLCALV-------TATNSFVTAPIARAFGVQHLI 135
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 26.6 bits (59), Expect = 7.6
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 102 LLDQGRVQFVVWNGKHGYEREAPYDIIH 129
+ Q QF ++ G AP ++
Sbjct: 486 FVRQAYEQFEIFTGL-----PAPKELYW 508
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 26.0 bits (58), Expect = 8.3
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 34 PHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ QMLE D K +L++ G+G + LA RV E ++
Sbjct: 196 AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQ 252
Query: 93 KNI 95
NI
Sbjct: 253 YNI 255
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 26.1 bits (58), Expect = 8.6
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 32 SSPHIHAQMLELLK 45
++ +H ++LEL+K
Sbjct: 239 ANEKLHPKLLELIK 252
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 26.0 bits (58), Expect = 8.7
Identities = 3/18 (16%), Positives = 13/18 (72%)
Query: 32 SSPHIHAQMLELLKDKIK 49
S+ IH ++++++ + ++
Sbjct: 234 SNGLIHDEVVKVVNEVVE 251
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase;
2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A*
2rba_A* 3ufj_A* 3uo7_A*
Length = 230
Score = 25.8 bits (56), Expect = 8.7
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACL-AYMAGPEGRVYGVEH 83
+ + L D + I+ IG G + A + GP +
Sbjct: 11 LTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLF 55
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 26.0 bits (58), Expect = 9.5
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
A+ LE L ++P R+LD+ G G T LA A V GVE V L E +N
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQN 327
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 26.0 bits (57), Expect = 9.8
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
+ K+ ++D+ +G G + ++Y ++ H +EL + +IK
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACKNAK----KIYAIDINPHAIELLKKNIK 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.414
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,302,815
Number of extensions: 202550
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 225
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)