BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10573
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 31 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 87
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ V
Sbjct: 88 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 147
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
P+ + V + + L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 148 EEAPYDAIHVGAAAPVVPQA---LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 200
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ R PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 38 MKETDRKHYSPR---NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 94
Query: 61 SGYLTACL-----AYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115
SGYLTAC A + R+ G+EH EL S N++ + +LD G++ V
Sbjct: 95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
+ P+ + V + + + L++QL GGR+++PVG Q + DK A+
Sbjct: 155 RKGYPPNAPYNAIHVGAAA---PDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDAN 211
Query: 176 G 176
G
Sbjct: 212 G 212
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR + + PY I +G IS+PH+HA L+ L + +KPG+R +D+GSG
Sbjct: 34 MLQVDRGKYIKEI---PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSG 90
Query: 61 SGYLTACLA----YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116
SGYLT C+A + V G+E V +L S++NI + ELL + +
Sbjct: 91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH---- 146
Query: 117 RHLLLTNPH-----GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162
+++ N G I + E L+D L G++++P+ E +
Sbjct: 147 KNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDY 197
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R+ F + E Y +IGYG IS+ H+ M ELL +KPG ++L+IG+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119
G GY A A + G +G V +E + ELAE + + + K L + V L +
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK----LGYDNVIVIVGDGTLGY- 141
Query: 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
P I + + L+ QL GG+++MPVG Q L + +K D
Sbjct: 142 ---EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL--QRLVLAEKRGD 192
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 14 VNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG 73
++EP I + G +S+PH+ A MLE+ +KPG IL++G+GSG+ A ++ +
Sbjct: 62 IDEPLPIPA-----GQTVSAPHMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVK 114
Query: 74 PEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRVQFVAYFWLRHLLLTNPHGSTR 129
+ VY +E + EL E + +N+++ + +L G F P
Sbjct: 115 TD--VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF------------PPKAPYD 160
Query: 130 VIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 176
VI + L++QL GG++++PVG Q L + K DG
Sbjct: 161 VIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG 207
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 27/143 (18%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG G IS P++ A+M ELL+ + P +R+L+IG+GSGY TA LA++ V ++ +
Sbjct: 54 IGQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGL 111
Query: 85 MELAESSIKNIDKGNSELLD-------QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137
A +KN+D N Q R F A ++ P
Sbjct: 112 QWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAI-----IVTAAP------------- 153
Query: 138 EEYNSWLLDQLVPGGRMVMPVGE 160
E + L+ QL GG +V+PVGE
Sbjct: 154 PEIPTALMTQLDEGGILVLPVGE 176
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
S P + A +E + + G R+L+IG G+GY A ++ + G +G V VE+ ++ E
Sbjct: 59 SQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE-- 114
Query: 92 IKNIDKGNSELLDQGRVQFVA---YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQL 148
I K N E L V FV Y+ + +P+ V + E +W QL
Sbjct: 115 ---IAKRNVERLGIENVIFVCGDGYYGVPEF---SPYDVIFV--TVGVDEVPETW-FTQL 165
Query: 149 VPGGRMVMPVGEPFKGQNLTIIDKLADGY 177
GGR+++P+ + + K D Y
Sbjct: 166 KEGGRVIVPINLKLSRRQPAFLFKKKDPY 194
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 13 VVNEPYRIKSR-QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM 71
+++E +K R QI Y D S A ML+ +K G RI+D G GSG + A LA
Sbjct: 82 LIDEIMNMKRRTQIVYPKDSS---FIAMMLD-----VKEGDRIIDTGVGSGAMCAVLARA 133
Query: 72 AGPEGRVYGVEHVMELAESSIKNIDK 97
G G+V+ E E A+ + N+ K
Sbjct: 134 VGSSGKVFAYEKREEFAKLAESNLTK 159
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G + P AQ++ + I PGAR+L+ G+GSG LT L GP G+V E +
Sbjct: 79 GPQVIYPKDAAQIVH--EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADH 136
Query: 88 AESSIKNID 96
AE + +N+
Sbjct: 137 AEHARRNVS 145
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
I PG I++ G GSG LT LA + GPEGRV E + A+ + +NI
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
I PG I++ G GSG LT LA + GPEGRV E + A+ + +NI
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++KPG +IL+IG G G L+A LA G G V G++
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPGA++L +G+ SG + ++ + GP+G VY VE
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+K G +LD+G+G+G+ L+ M G +G+VY ++ E+ + + ++K
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
L++ +K G RIL +G SG + ++ + GP GR+YGVE
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
LK + R+L+ G+GSG L A L+ +A G V+ E V E +++ KN+ K N
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFN 137
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV E
Sbjct: 85 GTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE 137
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 31 ISSPH---IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I +PH + A ++ LK+ IKPG +L +G SG + ++ + G EG++YG+E
Sbjct: 57 IWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 112
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+K G ++D G+G TA LA + G GRV+G ++ + +I N K ++L R
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFG----FDIQDKAIANTTKKLTDLNLIDR 75
Query: 108 VQFV 111
V +
Sbjct: 76 VTLI 79
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 31 ISSPH---IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I +PH + A ++ LK+ IKPG +L +G SG + ++ + G EG++YG+E
Sbjct: 50 IWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 105
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVM 85
A + P + M+ LL + PG R+L+ G+GSG LT LA G +G V E H +
Sbjct: 77 ATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL 134
Query: 86 ELAESSIK 93
AE +++
Sbjct: 135 AQAERNVR 142
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
D+ P A +LE +++PG RI DIG G+G T LA V GV+ E E
Sbjct: 17 DVPYPEWVAWVLE----QVEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEXLE 68
Query: 90 SSIKNIDKGNSELLDQGRVQFVAYFWL---RHLLLTNPHGSTRVI--------QSCWTKE 138
+ + + N + FW+ R L L P + ++ K+
Sbjct: 69 IAQEKAXETNRHVD----------FWVQDXRELELPEPVDAITILCDSLNYLQTEADVKQ 118
Query: 139 EYNSWLLDQLVPGGRMVMPVGEPFKGQNL 167
++S L GG+++ V P+K + L
Sbjct: 119 TFDS-AARLLTDGGKLLFDVHSPYKXETL 146
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSE 101
KDKI +LD+G GSG L+ A AG ++Y VE + + AE +K+ + +
Sbjct: 44 FKDKI-----VLDVGCGSGILS-FFAAQAGAR-KIYAVEASTMAQHAEVLVKSNNLTDRI 96
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHG----STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157
++ G+V+ V+ ++++ P G + R+++S ++Y L P G M
Sbjct: 97 VVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKY-------LKPSGNMFPT 149
Query: 158 VGE----PFKGQNL 167
+G+ PF + L
Sbjct: 150 IGDVHLAPFTDEQL 163
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSE 101
KDKI +LD+G GSG L+ A AG ++Y VE + + AE +K+ + +
Sbjct: 49 FKDKI-----VLDVGCGSGILS-FFAAQAGAR-KIYAVEASTMAQHAEVLVKSNNLTDRI 101
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHG----STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157
++ G+V+ V+ ++++ P G + R+++S ++Y L P G M
Sbjct: 102 VVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKY-------LKPSGNMFPT 154
Query: 158 VGE----PFKGQNL 167
+G+ PF + L
Sbjct: 155 IGDVHLAPFTDEQL 168
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSE 101
KDKI +LD+G GSG L+ A AG ++Y VE + + AE +K+ + +
Sbjct: 45 FKDKI-----VLDVGCGSGILS-FFAAQAGAR-KIYAVEASTMAQHAEVLVKSNNLTDRI 97
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHG----STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157
++ G+V+ V+ ++++ P G + R+++S ++Y L P G M
Sbjct: 98 VVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKY-------LKPSGNMFPT 150
Query: 158 VGE----PFKGQNL 167
+G+ PF + L
Sbjct: 151 IGDVHLAPFTDEQL 164
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSE 101
KDKI +LD+G GSG L+ A AG ++Y VE + + AE +K+ + +
Sbjct: 40 FKDKI-----VLDVGCGSGILS-FFAAQAGAR-KIYAVEASTMAQHAEVLVKSNNLTDRI 92
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHG----STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157
++ G+V+ V+ ++++ P G + R+++S ++Y L P G M
Sbjct: 93 VVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKY-------LKPSGNMFPT 145
Query: 158 VGE----PFKGQNL 167
+G+ PF + L
Sbjct: 146 IGDVHLAPFTDEQL 159
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH--VMELAESSIKNIDKGNSE 101
KDKI +LD+G GSG L+ A AG ++Y VE + + AE +K+ + +
Sbjct: 157 FKDKI-----VLDVGCGSGILSF-FAAQAGAR-KIYAVEASTMAQHAEVLVKSNNLTDRI 209
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHG----STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157
++ G+V+ V+ ++++ P G + R+++S ++Y L P G M
Sbjct: 210 VVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKY-------LKPSGNMFPT 262
Query: 158 VGE----PFKGQNL 167
+G+ PF + L
Sbjct: 263 IGDVHLAPFTDEQL 276
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDK 97
L+ L ++PG ++LD+G+GSG L + G+ GV+ V+ AE++ K
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKR--N 165
Query: 98 GNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
G +G ++ F LL+ N + + +E LVPGGR ++
Sbjct: 166 GVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYRE--------ALVPGGRALL 216
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDK 97
L+ L ++PG ++LD+G+GSG L + G+ GV+ V+ AE++ K
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKR--N 165
Query: 98 GNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
G +G ++ F LL+ N + + +E LVPGGR ++
Sbjct: 166 GVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYRE--------ALVPGGRALL 216
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPG +L +G SG + ++ + G EG+++G+E
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIE 105
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 11/63 (17%)
Query: 40 MLELLKDKIKP----GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+LE L++++ P G ++LD+G+G G LT LA M V GVE + +S+ ++
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDL----ASVLSL 271
Query: 96 DKG 98
KG
Sbjct: 272 QKG 274
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 11/63 (17%)
Query: 40 MLELLKDKIKP----GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+LE L++++ P G ++LD+G+G G LT LA M V GVE + +S+ ++
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDL----ASVLSL 271
Query: 96 DKG 98
KG
Sbjct: 272 QKG 274
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
+++ ++PG IL++G GSG ++ + Y +G + V+E E ++K SE
Sbjct: 103 IMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTLT----VVERDEDNLKKAXDNLSEF 158
Query: 103 LDQGRVQ 109
D G V+
Sbjct: 159 YDIGNVR 165
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVE------------------HVMELAESSI 92
G +LD+G+GSG L A + AG +VY VE H++E+ E S+
Sbjct: 64 GKTVLDVGTGSGIL-AIWSAQAGAR-KVYAVEATKMADHARALVKANNLDHIVEVIEGSV 121
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLL 121
++I E +D +++ YF LR +
Sbjct: 122 EDISL--PEKVDVIISEWMGYFLLRESMF 148
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I AQ+ E L DK +LDIG G GY T A A PE +G++
Sbjct: 74 IVAQLRERLDDK---ATAVLDIGCGEGYYTHAFA-DALPEITTFGLD 116
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 24 QIGYGADISSPHI---HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80
Q+ A++ + + + L+LL +I+ IL+IG+ GY T LA GRV
Sbjct: 30 QVNAAANLPAHDVSPTQGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVT 88
Query: 81 VEHVMELAESSIKNIDKGN 99
+E + A+ + NI++ N
Sbjct: 89 LEASEKHADIARSNIERAN 107
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+P L +LK + G +LD+G G+LT +A GP R G++ L S+
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RXVGLDIDSRLIHSAR 87
Query: 93 KNIDKGNSELL 103
+NI SE L
Sbjct: 88 QNIRHYLSEEL 98
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 47 KIKPGARILDIGSGSG 62
+ KPG RILD+GSGSG
Sbjct: 33 RXKPGTRILDLGSGSG 48
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRV 78
SP Q L +L KI RI++IG+ +GY + C A +G++
Sbjct: 45 SPE-EGQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPEDGKI 88
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
A+ LE L ++P R+LD+ G G T LA A V GVE V L E +N
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGXGNFTLPLATQA---ASVVGVEGVPALVEKGQQN 327
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80
+ AQ L L D +PG R+LD +GSG + A GP VY
Sbjct: 190 VLAQALLRLADA-RPGMRVLDPFTGSGTIALEAASTLGPTSPVYA 233
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAY 70
YG + + ++ A+ LK + PG +L++G+G+GY L Y
Sbjct: 14 YGTPLGA-YVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY 56
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+L+LL + PG ILD+G G+G LT +A +G E V G ++ E + +N
Sbjct: 49 LLQLLNPQ--PGEFILDLGCGTGQLTEKIA-QSGAE--VLGTDNAATXIEKARQN 98
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A+ LE L ++P R+LD+ G G T LA A V GVE V L E +N
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARL 330
Query: 98 GNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
L+++ + + V + W K ++ LLD G VM
Sbjct: 331 NG----------------LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVM 373
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
LLK K +LDIG SG L A + RV G+E E AE + + +D
Sbjct: 25 LLKHIKKEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD 75
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPE 75
++E+ D G ++D G+G+G L AC +Y+ G E
Sbjct: 41 LIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE 75
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
I+ G ++++G G+G LT L + P ++Y +E E+ E ++K+I E++++
Sbjct: 28 IEEGNTVVEVGGGTGNLTKVL--LQHPLKKLYVIELDREMVE-NLKSIGDERLEVINEDA 84
Query: 108 VQF 110
+F
Sbjct: 85 SKF 87
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
I+ G ++++G G+G LT L + P ++Y +E E+ E ++K+I E++++
Sbjct: 29 IEEGNTVVEVGGGTGNLTKVL--LQHPLKKLYVIELDREMVE-NLKSIGDERLEVINEDA 85
Query: 108 VQF 110
+F
Sbjct: 86 SKF 88
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL---DQGR 107
GA +LD+G G+G + + G G+V GV+ + E + K ++ + +
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143
Query: 108 VQFVAYFWLRHLLLTNPHGSTR-----VIQSCWTKEEYNSWLL 145
V+F+ F + +L P G VI +C N L
Sbjct: 144 VRFLKGF-IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLAL 185
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
AQ + +L D KPG R+LD+ + G T LA G +G + E + ++N+++
Sbjct: 90 AQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGLLENVER 148
Query: 98 GNSEL 102
+ L
Sbjct: 149 WGAPL 153
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 22/90 (24%)
Query: 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC 134
E RV+ + H+ EL+E I EL +Q + H L H T+ +++
Sbjct: 170 EARVFAISHLKELSEEKI------GKELAEQ----------VNHALELPLHRRTQRLEAV 213
Query: 135 WT------KEEYNSWLLDQLVPGGRMVMPV 158
W+ KE+ N LL+ + M+ V
Sbjct: 214 WSIEAYRKKEDANQVLLELAILDYNMIQSV 243
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131
+ELA +SI+N+ NS+L F+ W +L + + V+
Sbjct: 222 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131
+ELA +SI+N+ NS+L F+ W +L + + V+
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131
+ELA +SI+N+ NS+L F+ W +L + + V+
Sbjct: 227 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
AQ + +L D KPG R+LD+ + G T LA G +G + E + ++N+++
Sbjct: 90 AQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER 148
Query: 98 GNSEL 102
+ L
Sbjct: 149 WGAPL 153
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
PGA++L+ G G G T LA P+ + ++ E E + +N +K
Sbjct: 37 PGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEK 83
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
AQ + +L D KPG R+LD+ + G T LA G +G + E + ++N+++
Sbjct: 90 AQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER 148
Query: 98 GNSEL 102
+ L
Sbjct: 149 WGAPL 153
>pdb|3IFE|A Chain A, 1.55 Angstrom Resolution Crystal Structure Of Peptidase T
(Pept-1) From Bacillus Anthracis Str. 'ames Ancestor'
Length = 434
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIG 58
DRKNF R +K Q YG D ++ Q +L +KI+P I+DI
Sbjct: 310 DRKNFEARKNTIENIVKQMQEKYGQDAVVLEMNDQYYNML-EKIEPVREIVDIA 362
>pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
Length = 185
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 14 VNEPYRIKSRQIGY--GAD---ISSPHIHAQMLELLKDKIKPGARILDI-----GSGSGY 63
V EP R +GY AD I+ PH + +E + D+++ G R+ G
Sbjct: 86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIXIYYGHDGGDXE 145
Query: 64 LTACLAYMAGPEGRVY 79
A L Y+ G + RV+
Sbjct: 146 KDAVLEYVIGLDQRVF 161
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 39 QMLELLKDKIKPGARIL 55
++L ++KDK+KPG RI+
Sbjct: 115 EILRIIKDKLKPGGRII 131
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACL----AYMAGPEGRVYGVEHVMELAESSIKNID 96
+E + D +K A I G G +C+ +Y+AG G G+ ++ + ++ + +D
Sbjct: 228 IEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 287
Query: 97 KGNSE 101
+G ++
Sbjct: 288 QGGNK 292
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACL----AYMAGPEGRVYGVEHVMELAESSIKNID 96
+E + D +K A I G G +C+ +Y+AG G G+ ++ + ++ + +D
Sbjct: 155 IEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 214
Query: 97 KGNSE 101
+G ++
Sbjct: 215 QGGNK 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,423,835
Number of Sequences: 62578
Number of extensions: 263612
Number of successful extensions: 828
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 70
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)