Query psy10573
Match_columns 206
No_of_seqs 133 out of 1541
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:52:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 5.1E-30 1.1E-34 190.9 16.1 176 1-195 24-204 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 1.4E-29 3E-34 192.0 16.6 184 1-196 24-208 (209)
3 PRK13942 protein-L-isoaspartat 100.0 9.9E-27 2.1E-31 177.9 18.8 181 1-195 28-209 (212)
4 PRK13944 protein-L-isoaspartat 99.9 4.7E-26 1E-30 173.4 19.3 181 1-193 24-205 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 7.9E-26 1.7E-30 173.5 19.1 184 1-198 29-213 (215)
6 KOG1661|consensus 99.9 4.5E-25 9.8E-30 162.3 14.2 194 1-202 32-236 (237)
7 PRK00312 pcm protein-L-isoaspa 99.9 6.5E-23 1.4E-27 157.1 19.5 180 1-196 30-210 (212)
8 PRK13943 protein-L-isoaspartat 99.9 1.1E-20 2.4E-25 152.0 19.5 182 1-194 27-215 (322)
9 COG2226 UbiE Methylase involve 99.8 2.4E-18 5.3E-23 132.1 13.5 106 48-162 49-160 (238)
10 PF01209 Ubie_methyltran: ubiE 99.8 4.7E-18 1E-22 131.4 11.3 114 39-162 38-157 (233)
11 PF12847 Methyltransf_18: Meth 99.7 1.7E-16 3.8E-21 109.2 12.9 101 50-158 1-111 (112)
12 PLN02233 ubiquinone biosynthes 99.7 6.6E-16 1.4E-20 121.7 14.7 110 48-162 71-186 (261)
13 PF13847 Methyltransf_31: Meth 99.7 7E-16 1.5E-20 112.1 12.7 103 49-160 2-112 (152)
14 COG2242 CobL Precorrin-6B meth 99.7 1.9E-15 4E-20 110.8 14.7 124 28-162 14-139 (187)
15 TIGR02469 CbiT precorrin-6Y C5 99.7 2.3E-15 5.1E-20 105.2 14.0 116 34-159 5-123 (124)
16 TIGR02752 MenG_heptapren 2-hep 99.7 2E-15 4.4E-20 117.0 14.2 115 38-162 35-155 (231)
17 PF08241 Methyltransf_11: Meth 99.6 2.3E-15 5E-20 100.1 10.0 89 55-156 1-95 (95)
18 PLN02244 tocopherol O-methyltr 99.6 8.2E-15 1.8E-19 119.7 14.4 104 49-161 117-226 (340)
19 PRK00377 cbiT cobalt-precorrin 99.6 1.8E-14 3.8E-19 109.2 14.5 123 31-161 23-148 (198)
20 COG2230 Cfa Cyclopropane fatty 99.6 3.6E-15 7.8E-20 116.7 10.8 126 48-192 70-203 (283)
21 PRK11036 putative S-adenosyl-L 99.6 1.2E-14 2.7E-19 114.3 13.3 105 49-162 43-153 (255)
22 PF08704 GCD14: tRNA methyltra 99.6 4.7E-15 1E-19 114.9 10.5 133 23-162 15-150 (247)
23 PRK00107 gidB 16S rRNA methylt 99.6 2.4E-14 5.3E-19 107.1 13.8 105 48-162 43-149 (187)
24 PF05175 MTS: Methyltransferas 99.6 2.2E-14 4.8E-19 106.1 13.0 115 36-162 19-144 (170)
25 PRK07402 precorrin-6B methylas 99.6 7.3E-14 1.6E-18 105.7 14.7 124 28-161 20-145 (196)
26 PRK14103 trans-aconitate 2-met 99.6 2.7E-14 5.8E-19 112.4 12.7 104 38-160 19-128 (255)
27 PRK11873 arsM arsenite S-adeno 99.6 3.6E-14 7.9E-19 112.6 13.5 104 48-159 75-184 (272)
28 PRK00121 trmB tRNA (guanine-N( 99.6 2.4E-14 5.3E-19 108.8 11.7 108 49-162 39-160 (202)
29 TIGR00138 gidB 16S rRNA methyl 99.6 3.4E-14 7.3E-19 106.0 12.2 103 50-162 42-146 (181)
30 PLN02396 hexaprenyldihydroxybe 99.6 3.5E-14 7.6E-19 114.5 13.0 103 50-162 131-239 (322)
31 PTZ00098 phosphoethanolamine N 99.6 6.6E-14 1.4E-18 110.5 14.1 112 36-161 40-159 (263)
32 PRK08287 cobalt-precorrin-6Y C 99.6 1.2E-13 2.5E-18 103.8 14.8 117 31-160 14-133 (187)
33 COG2519 GCD14 tRNA(1-methylade 99.6 4.1E-14 8.9E-19 108.2 12.1 128 25-162 71-199 (256)
34 PRK15451 tRNA cmo(5)U34 methyl 99.6 7E-14 1.5E-18 109.5 13.6 114 36-158 42-164 (247)
35 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.3E-14 2.7E-19 110.2 8.5 102 49-162 58-165 (243)
36 PF02353 CMAS: Mycolic acid cy 99.6 6E-14 1.3E-18 110.9 12.7 102 48-161 60-169 (273)
37 PRK01683 trans-aconitate 2-met 99.6 7.8E-14 1.7E-18 109.9 13.2 106 38-160 21-132 (258)
38 PRK10258 biotin biosynthesis p 99.6 7.6E-14 1.7E-18 109.5 13.1 98 49-162 41-144 (251)
39 TIGR03533 L3_gln_methyl protei 99.6 1.1E-13 2.4E-18 110.3 14.0 136 16-160 85-253 (284)
40 PF13659 Methyltransf_26: Meth 99.6 6.6E-14 1.4E-18 97.1 10.8 101 51-159 1-116 (117)
41 PRK11207 tellurite resistance 99.5 1.2E-13 2.5E-18 104.6 12.6 98 48-157 28-133 (197)
42 PRK11088 rrmA 23S rRNA methylt 99.5 1.3E-13 2.7E-18 109.5 12.8 113 36-162 70-185 (272)
43 TIGR00091 tRNA (guanine-N(7)-) 99.5 9.6E-14 2.1E-18 104.9 11.5 108 49-162 15-136 (194)
44 TIGR02072 BioC biotin biosynth 99.5 1.9E-13 4.1E-18 106.1 13.4 114 36-162 19-139 (240)
45 PRK15001 SAM-dependent 23S rib 99.5 2.1E-13 4.6E-18 111.9 13.8 114 37-159 217-341 (378)
46 PRK08317 hypothetical protein; 99.5 5.1E-13 1.1E-17 103.6 14.9 112 38-160 9-126 (241)
47 COG4106 Tam Trans-aconitate me 99.5 6.8E-14 1.5E-18 104.1 9.3 100 48-162 28-133 (257)
48 PRK14966 unknown domain/N5-glu 99.5 4.4E-13 9.5E-18 110.5 14.9 137 15-161 217-384 (423)
49 PLN02336 phosphoethanolamine N 99.5 2.8E-13 6.1E-18 115.5 14.2 112 37-161 255-372 (475)
50 TIGR03534 RF_mod_PrmC protein- 99.5 4.3E-13 9.3E-18 105.1 14.2 102 49-160 86-219 (251)
51 PRK11805 N5-glutamine S-adenos 99.5 3.1E-13 6.8E-18 108.7 13.6 137 16-161 97-266 (307)
52 TIGR00740 methyltransferase, p 99.5 5.6E-13 1.2E-17 103.9 14.1 103 48-159 51-162 (239)
53 TIGR00477 tehB tellurite resis 99.5 2.7E-13 5.8E-18 102.5 11.9 107 37-158 19-133 (195)
54 TIGR00406 prmA ribosomal prote 99.5 7.4E-13 1.6E-17 105.9 14.7 115 36-161 145-262 (288)
55 KOG1540|consensus 99.5 5.5E-13 1.2E-17 101.7 13.1 109 48-161 98-217 (296)
56 COG2264 PrmA Ribosomal protein 99.5 2.3E-13 5.1E-18 107.4 11.4 117 34-160 146-265 (300)
57 PRK04266 fibrillarin; Provisio 99.5 5.3E-13 1.2E-17 102.8 13.2 103 48-159 70-177 (226)
58 PF06325 PrmA: Ribosomal prote 99.5 2.6E-13 5.6E-18 108.0 11.3 116 34-162 145-263 (295)
59 COG4123 Predicted O-methyltran 99.5 4.7E-13 1E-17 103.1 12.3 108 48-161 42-173 (248)
60 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.6E-18 93.4 8.0 90 54-152 1-101 (101)
61 PRK14903 16S rRNA methyltransf 99.5 6E-13 1.3E-17 111.8 13.7 108 48-162 235-370 (431)
62 PLN02490 MPBQ/MSBQ methyltrans 99.5 7E-13 1.5E-17 107.5 13.5 99 49-159 112-216 (340)
63 PLN02781 Probable caffeoyl-CoA 99.5 9E-13 2E-17 102.3 13.2 117 36-157 55-177 (234)
64 PTZ00146 fibrillarin; Provisio 99.5 6.6E-13 1.4E-17 104.8 12.1 115 36-157 117-236 (293)
65 PRK11705 cyclopropane fatty ac 99.5 1.3E-12 2.8E-17 108.2 14.2 99 48-162 165-271 (383)
66 PRK04457 spermidine synthase; 99.5 1.8E-12 3.8E-17 102.2 14.3 108 48-162 64-181 (262)
67 PRK11188 rrmJ 23S rRNA methylt 99.5 4.5E-13 9.8E-18 102.2 10.6 127 15-162 19-169 (209)
68 PF07021 MetW: Methionine bios 99.5 4.4E-13 9.6E-18 98.9 10.0 100 47-162 10-113 (193)
69 TIGR01177 conserved hypothetic 99.5 2E-12 4.2E-17 105.4 14.8 118 32-162 166-298 (329)
70 TIGR00536 hemK_fam HemK family 99.5 1.6E-12 3.5E-17 103.8 13.3 102 52-162 116-248 (284)
71 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.9E-12 4.1E-17 106.1 13.7 106 49-162 121-239 (390)
72 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.8E-12 3.8E-17 102.5 12.8 107 48-162 69-203 (264)
73 COG2813 RsmC 16S RNA G1207 met 99.4 1.5E-12 3.2E-17 102.4 11.9 112 38-162 148-270 (300)
74 PRK06922 hypothetical protein; 99.4 2E-12 4.4E-17 111.3 13.8 102 48-159 416-538 (677)
75 smart00828 PKS_MT Methyltransf 99.4 1.3E-12 2.8E-17 100.8 11.5 100 52-160 1-106 (224)
76 TIGR00537 hemK_rel_arch HemK-r 99.4 2.7E-12 5.8E-17 95.8 12.7 101 48-162 17-144 (179)
77 PLN02476 O-methyltransferase 99.4 2.6E-12 5.6E-17 101.2 13.2 116 37-157 106-227 (278)
78 PRK14902 16S rRNA methyltransf 99.4 2.3E-12 5E-17 109.0 13.8 107 48-162 248-383 (444)
79 PRK14901 16S rRNA methyltransf 99.4 2.5E-12 5.4E-17 108.4 13.9 110 48-162 250-388 (434)
80 COG4122 Predicted O-methyltran 99.4 3.8E-12 8.2E-17 96.7 13.4 118 34-158 45-166 (219)
81 PRK12335 tellurite resistance 99.4 2.4E-12 5.2E-17 102.9 13.0 96 50-158 120-223 (287)
82 PRK14967 putative methyltransf 99.4 4E-12 8.6E-17 98.1 13.7 102 48-161 34-162 (223)
83 PRK09489 rsmC 16S ribosomal RN 99.4 3.4E-12 7.3E-17 104.1 13.7 109 38-160 186-305 (342)
84 PF13489 Methyltransf_23: Meth 99.4 2.2E-12 4.8E-17 94.1 11.4 100 42-162 14-119 (161)
85 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.2E-12 4.8E-17 109.0 13.0 146 34-194 279-432 (443)
86 PF08242 Methyltransf_12: Meth 99.4 4.1E-14 9E-19 95.3 2.0 93 55-154 1-99 (99)
87 PRK00517 prmA ribosomal protei 99.4 3.7E-12 8.1E-17 99.9 13.2 110 35-161 104-216 (250)
88 KOG1271|consensus 99.4 1.7E-12 3.7E-17 94.3 10.2 120 36-163 47-186 (227)
89 PRK05785 hypothetical protein; 99.4 3.7E-12 8E-17 98.4 12.7 95 39-151 40-140 (226)
90 PRK00216 ubiE ubiquinone/menaq 99.4 7.6E-12 1.6E-16 97.1 14.6 115 37-160 40-160 (239)
91 TIGR03587 Pse_Me-ase pseudamin 99.4 4.4E-12 9.6E-17 96.4 12.9 105 37-159 31-143 (204)
92 PRK09328 N5-glutamine S-adenos 99.4 5.7E-12 1.2E-16 100.1 13.9 103 48-160 106-240 (275)
93 TIGR03704 PrmC_rel_meth putati 99.4 5.7E-12 1.2E-16 98.8 13.6 136 15-161 49-219 (251)
94 PRK00811 spermidine synthase; 99.4 3.8E-12 8.2E-17 101.5 12.7 110 49-161 75-194 (283)
95 PF01596 Methyltransf_3: O-met 99.4 3.1E-12 6.7E-17 97.0 11.2 119 34-157 30-154 (205)
96 PF03848 TehB: Tellurite resis 99.4 8.1E-12 1.7E-16 93.3 13.0 108 37-159 19-134 (192)
97 KOG1270|consensus 99.4 1.2E-12 2.5E-17 100.4 8.7 103 51-162 90-199 (282)
98 PRK15068 tRNA mo(5)U34 methylt 99.4 6.5E-12 1.4E-16 101.8 13.4 101 49-159 121-227 (322)
99 PRK01544 bifunctional N5-gluta 99.4 7.1E-12 1.5E-16 107.3 13.7 137 15-160 78-271 (506)
100 TIGR00452 methyltransferase, p 99.4 7.8E-12 1.7E-16 100.6 13.2 103 48-160 119-227 (314)
101 PF05401 NodS: Nodulation prot 99.4 4.6E-12 9.9E-17 93.8 10.6 96 51-160 44-148 (201)
102 PRK10901 16S rRNA methyltransf 99.4 9.1E-12 2E-16 104.8 13.7 107 48-162 242-376 (427)
103 KOG1541|consensus 99.4 2.6E-12 5.7E-17 96.0 9.0 139 5-165 10-167 (270)
104 PRK14968 putative methyltransf 99.4 1.5E-11 3.1E-16 92.2 13.2 112 38-161 13-151 (188)
105 PRK14904 16S rRNA methyltransf 99.4 1.1E-11 2.3E-16 104.9 13.8 106 48-162 248-381 (445)
106 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.7E-11 3.6E-16 94.2 13.7 112 38-161 29-146 (223)
107 PRK03522 rumB 23S rRNA methylu 99.4 1.3E-11 2.9E-16 99.9 13.6 145 34-194 155-304 (315)
108 COG2890 HemK Methylase of poly 99.4 1.7E-11 3.8E-16 97.3 13.1 135 16-162 76-242 (280)
109 PRK10909 rsmD 16S rRNA m(2)G96 99.4 7.1E-11 1.5E-15 89.2 15.7 120 32-161 36-162 (199)
110 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 104.9 13.0 108 38-159 27-143 (475)
111 TIGR03438 probable methyltrans 99.3 1.3E-11 2.8E-16 99.4 11.7 119 35-159 48-178 (301)
112 smart00138 MeTrc Methyltransfe 99.3 1.1E-11 2.5E-16 97.8 11.2 107 49-158 98-242 (264)
113 PRK01581 speE spermidine synth 99.3 2.1E-11 4.6E-16 98.8 12.6 111 48-161 148-271 (374)
114 TIGR00438 rrmJ cell division p 99.3 1.8E-11 3.8E-16 92.0 10.8 96 48-161 30-149 (188)
115 TIGR02716 C20_methyl_CrtF C-20 99.3 3.8E-11 8.3E-16 96.9 13.4 101 48-159 147-255 (306)
116 KOG4300|consensus 99.3 1.1E-11 2.4E-16 91.8 9.2 99 52-159 78-183 (252)
117 TIGR00563 rsmB ribosomal RNA s 99.3 2.6E-11 5.6E-16 102.1 12.8 116 39-162 229-372 (426)
118 PLN02589 caffeoyl-CoA O-methyl 99.3 3.7E-11 7.9E-16 93.5 12.3 118 34-157 65-189 (247)
119 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.8E-11 8.1E-16 91.8 12.2 107 49-160 33-154 (213)
120 PLN03075 nicotianamine synthas 99.3 8.9E-11 1.9E-15 93.1 14.4 105 49-160 122-235 (296)
121 smart00650 rADc Ribosomal RNA 99.3 5E-11 1.1E-15 88.1 11.9 107 38-159 3-114 (169)
122 TIGR00417 speE spermidine synt 99.3 5.5E-11 1.2E-15 94.3 12.5 109 49-161 71-189 (270)
123 PRK06202 hypothetical protein; 99.3 6E-11 1.3E-15 92.1 12.3 99 49-160 59-168 (232)
124 PRK05134 bifunctional 3-demeth 99.3 8.7E-11 1.9E-15 91.1 13.0 102 48-160 46-153 (233)
125 TIGR02085 meth_trns_rumB 23S r 99.3 1.8E-11 3.9E-16 101.3 9.3 153 25-194 205-364 (374)
126 COG1092 Predicted SAM-dependen 99.3 6.8E-11 1.5E-15 97.2 12.5 122 35-162 203-340 (393)
127 PLN02366 spermidine synthase 99.3 9.7E-11 2.1E-15 94.1 13.1 109 49-160 90-208 (308)
128 PRK15128 23S rRNA m(5)C1962 me 99.3 7.6E-11 1.6E-15 97.9 12.8 110 48-162 218-343 (396)
129 KOG2904|consensus 99.3 1.1E-10 2.3E-15 90.1 12.6 140 15-161 109-288 (328)
130 TIGR00479 rumA 23S rRNA (uraci 99.3 2E-11 4.4E-16 102.9 9.3 147 34-193 274-427 (431)
131 TIGR01983 UbiG ubiquinone bios 99.3 2.8E-10 6.1E-15 87.7 14.0 115 36-160 29-151 (224)
132 PF02390 Methyltransf_4: Putat 99.3 6.8E-11 1.5E-15 89.2 10.2 106 51-162 18-137 (195)
133 PHA03412 putative methyltransf 99.2 1.6E-10 3.6E-15 88.5 12.2 112 27-157 30-161 (241)
134 cd02440 AdoMet_MTases S-adenos 99.2 2.3E-10 4.9E-15 76.3 11.4 96 53-157 1-103 (107)
135 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.5E-15 103.6 12.6 107 49-162 537-660 (702)
136 TIGR02021 BchM-ChlM magnesium 99.2 2.7E-10 5.9E-15 87.6 13.1 105 39-156 44-156 (219)
137 PRK03612 spermidine synthase; 99.2 1.1E-10 2.3E-15 100.5 11.8 110 49-161 296-418 (521)
138 PLN02672 methionine S-methyltr 99.2 5E-10 1.1E-14 102.1 15.6 145 15-163 81-283 (1082)
139 PRK13255 thiopurine S-methyltr 99.2 4.6E-10 1E-14 86.2 13.2 105 48-157 35-154 (218)
140 TIGR02081 metW methionine bios 99.2 1.8E-10 3.8E-15 87.1 10.7 97 48-160 11-111 (194)
141 KOG2915|consensus 99.2 2.8E-10 6E-15 87.7 11.2 131 25-162 82-214 (314)
142 PF03291 Pox_MCEL: mRNA cappin 99.2 3.9E-10 8.5E-15 91.5 12.0 111 50-162 62-190 (331)
143 PRK11933 yebU rRNA (cytosine-C 99.2 5.7E-10 1.2E-14 94.3 13.4 108 48-162 111-246 (470)
144 COG3963 Phospholipid N-methylt 99.2 4.2E-10 9.2E-15 80.8 10.6 132 16-162 17-160 (194)
145 COG0220 Predicted S-adenosylme 99.2 4.5E-10 9.7E-15 86.3 10.5 106 52-163 50-169 (227)
146 KOG1975|consensus 99.1 2.6E-10 5.7E-15 89.9 9.0 111 48-162 115-241 (389)
147 PRK07580 Mg-protoporphyrin IX 99.1 1.3E-09 2.9E-14 84.2 12.9 104 38-155 50-162 (230)
148 KOG2899|consensus 99.1 4.4E-10 9.5E-15 85.3 9.6 125 37-162 45-213 (288)
149 PHA03411 putative methyltransf 99.1 2.2E-09 4.8E-14 84.1 13.3 112 27-157 45-182 (279)
150 PRK05031 tRNA (uracil-5-)-meth 99.1 2.3E-10 5.1E-15 94.3 8.3 149 33-194 188-351 (362)
151 PF10672 Methyltrans_SAM: S-ad 99.1 7.6E-10 1.6E-14 87.7 10.3 108 49-162 122-242 (286)
152 TIGR00755 ksgA dimethyladenosi 99.1 2.5E-09 5.5E-14 84.0 13.1 107 25-148 5-115 (253)
153 PLN02585 magnesium protoporphy 99.1 1.5E-09 3.2E-14 87.6 11.8 95 36-139 129-224 (315)
154 PRK00274 ksgA 16S ribosomal RN 99.1 1.2E-09 2.6E-14 86.7 11.2 97 26-138 19-116 (272)
155 PLN02823 spermine synthase 99.1 2.2E-09 4.8E-14 87.2 12.7 108 49-160 102-222 (336)
156 KOG3010|consensus 99.1 5.3E-10 1.1E-14 84.9 8.2 102 49-160 31-139 (261)
157 PRK14896 ksgA 16S ribosomal RN 99.1 2.3E-09 5E-14 84.5 12.1 96 26-138 6-102 (258)
158 PF01170 UPF0020: Putative RNA 99.1 7E-09 1.5E-13 77.3 13.9 118 30-158 10-150 (179)
159 PF08003 Methyltransf_9: Prote 99.1 3.6E-09 7.8E-14 83.5 12.6 103 49-163 114-224 (315)
160 COG0421 SpeE Spermidine syntha 99.1 3.8E-09 8.3E-14 83.7 12.5 122 36-161 61-193 (282)
161 TIGR02143 trmA_only tRNA (urac 99.1 5.3E-10 1.1E-14 91.8 7.9 148 34-194 180-342 (353)
162 TIGR00095 RNA methyltransferas 99.0 1E-08 2.2E-13 77.0 13.7 118 35-160 35-161 (189)
163 KOG3191|consensus 99.0 7.2E-09 1.6E-13 75.5 12.1 103 50-162 43-172 (209)
164 COG2263 Predicted RNA methylas 99.0 4.4E-09 9.6E-14 77.3 11.1 96 28-137 22-118 (198)
165 PF05724 TPMT: Thiopurine S-me 99.0 3.9E-09 8.5E-14 80.9 11.3 122 28-157 18-154 (218)
166 COG1041 Predicted DNA modifica 99.0 6.7E-09 1.4E-13 83.5 12.8 115 32-159 181-311 (347)
167 PTZ00338 dimethyladenosine tra 99.0 3.7E-09 7.9E-14 84.6 10.9 100 25-138 12-112 (294)
168 KOG2361|consensus 99.0 1.4E-09 3E-14 82.6 7.7 143 15-163 35-188 (264)
169 PRK11727 23S rRNA mA1618 methy 99.0 6.7E-09 1.4E-13 83.8 12.0 85 50-139 114-201 (321)
170 COG4976 Predicted methyltransf 99.0 4.9E-10 1.1E-14 84.5 4.9 119 30-164 107-231 (287)
171 PRK00536 speE spermidine synth 99.0 6.9E-09 1.5E-13 81.3 11.6 117 36-162 57-175 (262)
172 PF06080 DUF938: Protein of un 99.0 9.6E-09 2.1E-13 77.1 11.5 120 39-160 13-143 (204)
173 PRK13256 thiopurine S-methyltr 99.0 1.8E-08 3.8E-13 77.4 12.8 123 32-160 28-165 (226)
174 PF03602 Cons_hypoth95: Conser 99.0 1E-08 2.3E-13 76.5 11.2 126 30-161 22-156 (183)
175 PF02384 N6_Mtase: N-6 DNA Met 99.0 6.4E-09 1.4E-13 84.2 10.9 130 25-160 23-185 (311)
176 PF01564 Spermine_synth: Sperm 99.0 6.4E-09 1.4E-13 81.3 10.1 110 49-162 75-195 (246)
177 PF00891 Methyltransf_2: O-met 99.0 1.1E-08 2.3E-13 79.9 11.3 93 48-159 98-200 (241)
178 PF01269 Fibrillarin: Fibrilla 99.0 2.4E-08 5.3E-13 75.4 12.5 117 36-159 58-179 (229)
179 COG2265 TrmA SAM-dependent met 99.0 1.1E-08 2.3E-13 85.8 11.7 122 32-162 273-400 (432)
180 PRK00050 16S rRNA m(4)C1402 me 98.9 4E-09 8.8E-14 84.0 8.7 93 34-136 5-99 (296)
181 PF02475 Met_10: Met-10+ like- 98.9 1.1E-08 2.3E-13 77.3 10.2 101 46-155 97-199 (200)
182 KOG1663|consensus 98.9 3.4E-08 7.4E-13 74.7 12.6 119 34-158 59-183 (237)
183 COG2521 Predicted archaeal met 98.9 4.7E-09 1E-13 79.4 7.5 108 48-162 132-249 (287)
184 KOG1499|consensus 98.9 1.5E-08 3.2E-13 81.2 9.6 99 48-156 58-165 (346)
185 COG0144 Sun tRNA and rRNA cyto 98.9 7.4E-08 1.6E-12 79.2 13.9 109 48-162 154-292 (355)
186 PRK04338 N(2),N(2)-dimethylgua 98.9 5.3E-08 1.1E-12 80.7 12.7 112 36-157 44-157 (382)
187 PF10294 Methyltransf_16: Puta 98.9 3.6E-08 7.8E-13 73.1 10.4 110 48-161 43-159 (173)
188 PF05219 DREV: DREV methyltran 98.8 5.6E-08 1.2E-12 75.2 10.6 91 50-161 94-191 (265)
189 COG0293 FtsJ 23S rRNA methylas 98.8 6.6E-08 1.4E-12 72.6 10.4 136 9-163 7-164 (205)
190 TIGR02987 met_A_Alw26 type II 98.8 7.8E-08 1.7E-12 83.2 12.2 106 27-137 3-122 (524)
191 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 8.9E-08 1.9E-12 76.4 10.8 109 48-162 83-223 (283)
192 PRK01544 bifunctional N5-gluta 98.8 5.6E-08 1.2E-12 83.5 10.3 106 50-162 347-466 (506)
193 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.9E-09 1.3E-13 85.6 4.1 157 25-194 169-341 (352)
194 TIGR00006 S-adenosyl-methyltra 98.8 2.4E-07 5.3E-12 74.0 12.7 95 33-136 5-101 (305)
195 PF05891 Methyltransf_PK: AdoM 98.7 5.5E-08 1.2E-12 73.5 8.3 101 51-161 56-164 (218)
196 PLN02232 ubiquinone biosynthes 98.7 7.3E-08 1.6E-12 70.6 8.8 79 79-162 1-85 (160)
197 KOG3420|consensus 98.7 2.9E-08 6.3E-13 69.8 6.2 102 25-137 21-124 (185)
198 COG0742 N6-adenine-specific me 98.7 5.7E-07 1.2E-11 66.6 13.1 137 18-161 9-157 (187)
199 PRK04148 hypothetical protein; 98.7 5.1E-07 1.1E-11 63.5 12.0 96 50-162 16-113 (134)
200 COG0030 KsgA Dimethyladenosine 98.7 1.8E-07 3.9E-12 72.9 10.4 96 27-137 8-105 (259)
201 PF05148 Methyltransf_8: Hypot 98.7 1.1E-07 2.5E-12 71.2 8.3 95 37-159 60-159 (219)
202 PF02527 GidB: rRNA small subu 98.7 5.2E-07 1.1E-11 67.3 11.8 98 53-160 51-150 (184)
203 TIGR00308 TRM1 tRNA(guanine-26 98.7 2.1E-07 4.5E-12 76.9 10.2 101 51-158 45-147 (374)
204 PF05185 PRMT5: PRMT5 arginine 98.7 2.3E-07 5E-12 78.3 10.4 97 51-155 187-294 (448)
205 COG2520 Predicted methyltransf 98.7 3.6E-07 7.7E-12 74.0 10.8 107 48-163 186-294 (341)
206 PRK10611 chemotaxis methyltran 98.7 5.4E-07 1.2E-11 71.8 11.7 130 25-157 91-261 (287)
207 PF09445 Methyltransf_15: RNA 98.6 1.2E-07 2.7E-12 68.9 7.1 77 53-137 2-79 (163)
208 KOG2940|consensus 98.6 1.5E-07 3.2E-12 71.3 5.7 116 36-163 58-179 (325)
209 COG1889 NOP1 Fibrillarin-like 98.5 1.3E-06 2.8E-11 65.0 10.3 117 35-159 60-181 (231)
210 KOG0820|consensus 98.5 8.9E-07 1.9E-11 68.7 9.9 98 25-137 34-133 (315)
211 KOG1500|consensus 98.5 6E-07 1.3E-11 71.7 8.8 135 49-196 176-323 (517)
212 PF00398 RrnaAD: Ribosomal RNA 98.5 1.8E-06 3.8E-11 68.3 11.1 108 27-146 8-119 (262)
213 PF01739 CheR: CheR methyltran 98.5 1.1E-06 2.3E-11 66.4 9.3 107 50-159 31-176 (196)
214 COG0275 Predicted S-adenosylme 98.5 7.5E-06 1.6E-10 64.7 13.5 94 33-134 8-103 (314)
215 COG4262 Predicted spermidine s 98.5 4E-06 8.7E-11 67.7 11.7 111 49-162 288-411 (508)
216 PRK11783 rlmL 23S rRNA m(2)G24 98.4 6.9E-06 1.5E-10 73.5 14.3 124 32-162 173-351 (702)
217 TIGR00478 tly hemolysin TlyA f 98.4 1.2E-06 2.7E-11 67.5 8.4 96 49-157 74-170 (228)
218 PF01728 FtsJ: FtsJ-like methy 98.4 2.1E-06 4.5E-11 64.1 9.2 97 50-162 23-143 (181)
219 TIGR03439 methyl_EasF probable 98.4 4.7E-06 1E-10 67.4 11.8 119 36-160 62-199 (319)
220 PF08123 DOT1: Histone methyla 98.4 4.7E-06 1E-10 63.3 11.1 122 33-157 27-157 (205)
221 KOG1596|consensus 98.4 1.2E-06 2.5E-11 66.9 7.5 107 47-160 153-263 (317)
222 KOG3115|consensus 98.4 2.1E-06 4.7E-11 63.8 8.5 151 4-159 16-184 (249)
223 COG1352 CheR Methylase of chem 98.4 6.2E-06 1.4E-10 65.0 11.7 104 51-157 97-240 (268)
224 PF01795 Methyltransf_5: MraW 98.4 4E-06 8.6E-11 67.2 10.6 95 33-136 5-102 (310)
225 KOG2187|consensus 98.4 2.8E-06 6E-11 71.4 9.6 115 36-160 371-492 (534)
226 KOG1122|consensus 98.3 5.5E-06 1.2E-10 68.0 10.3 107 48-162 239-375 (460)
227 COG0116 Predicted N6-adenine-s 98.3 2.3E-05 5E-10 64.2 13.1 121 32-161 175-347 (381)
228 PRK10742 putative methyltransf 98.3 5.7E-06 1.2E-10 64.1 8.8 95 38-139 76-176 (250)
229 PF13578 Methyltransf_24: Meth 98.3 1E-06 2.2E-11 59.8 4.0 96 55-157 1-104 (106)
230 COG0357 GidB Predicted S-adeno 98.3 1E-05 2.2E-10 61.6 9.4 100 51-159 68-169 (215)
231 KOG3045|consensus 98.2 7.3E-06 1.6E-10 63.3 8.2 93 37-159 168-265 (325)
232 KOG4589|consensus 98.2 1.1E-05 2.4E-10 59.4 8.6 100 48-163 67-189 (232)
233 PF12147 Methyltransf_20: Puta 98.2 6.1E-05 1.3E-09 59.4 13.2 108 50-161 135-252 (311)
234 PF05971 Methyltransf_10: Prot 98.1 2.5E-05 5.4E-10 62.3 9.6 85 51-141 103-191 (299)
235 PF06962 rRNA_methylase: Putat 98.1 3.2E-05 6.9E-10 54.8 8.7 81 77-162 1-96 (140)
236 COG4076 Predicted RNA methylas 98.1 1.2E-05 2.6E-10 59.3 6.6 91 52-155 34-132 (252)
237 TIGR01444 fkbM_fam methyltrans 98.1 2E-05 4.3E-10 56.2 7.2 56 53-114 1-56 (143)
238 COG0286 HsdM Type I restrictio 98.0 0.00013 2.8E-09 62.7 12.2 129 27-161 165-329 (489)
239 PF03141 Methyltransf_29: Puta 98.0 4.4E-06 9.6E-11 70.2 3.2 91 53-162 120-223 (506)
240 KOG1709|consensus 97.9 0.00021 4.5E-09 54.0 10.9 110 36-157 90-205 (271)
241 KOG2730|consensus 97.9 2.9E-05 6.3E-10 58.6 6.3 79 50-137 94-175 (263)
242 KOG2352|consensus 97.9 0.00019 4.2E-09 60.3 11.2 105 44-159 41-162 (482)
243 PF03059 NAS: Nicotianamine sy 97.9 0.00019 4E-09 56.8 10.6 104 51-161 121-233 (276)
244 KOG3178|consensus 97.9 6.3E-05 1.4E-09 60.7 7.5 90 52-159 179-276 (342)
245 PF09243 Rsm22: Mitochondrial 97.8 0.00026 5.7E-09 56.3 10.7 48 50-97 33-80 (274)
246 PF04445 SAM_MT: Putative SAM- 97.8 4.1E-05 8.8E-10 59.0 5.7 87 48-139 71-163 (234)
247 COG0500 SmtA SAM-dependent met 97.8 0.00054 1.2E-08 48.5 11.5 101 54-162 52-159 (257)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 5.6E-05 1.2E-09 59.2 6.1 144 15-161 18-202 (256)
249 PF04816 DUF633: Family of unk 97.8 0.00051 1.1E-08 52.3 10.8 98 54-160 1-103 (205)
250 KOG1331|consensus 97.8 5.2E-05 1.1E-09 59.5 5.4 103 39-162 35-147 (293)
251 KOG2198|consensus 97.7 0.00045 9.7E-09 56.2 10.1 114 44-162 149-300 (375)
252 PF13679 Methyltransf_32: Meth 97.6 0.00036 7.7E-09 49.9 7.9 64 49-114 24-90 (141)
253 KOG3987|consensus 97.6 2E-05 4.3E-10 59.1 1.2 90 51-161 113-210 (288)
254 KOG2671|consensus 97.6 0.00016 3.5E-09 58.2 5.9 121 32-162 192-358 (421)
255 KOG1269|consensus 97.6 0.00017 3.6E-09 59.4 6.2 111 41-160 101-217 (364)
256 COG1189 Predicted rRNA methyla 97.6 0.00048 1E-08 52.9 8.1 96 49-159 78-179 (245)
257 PRK11760 putative 23S rRNA C24 97.6 0.00059 1.3E-08 55.4 9.0 86 48-151 209-296 (357)
258 COG3897 Predicted methyltransf 97.5 0.00046 9.9E-09 51.4 7.3 93 49-156 78-176 (218)
259 COG1063 Tdh Threonine dehydrog 97.5 0.0012 2.6E-08 54.4 10.3 104 49-162 167-273 (350)
260 KOG4058|consensus 97.5 0.00086 1.9E-08 47.7 7.9 122 35-167 59-181 (199)
261 PF07942 N2227: N2227-like pro 97.5 0.0022 4.9E-08 50.6 10.9 118 37-157 37-201 (270)
262 COG4798 Predicted methyltransf 97.4 0.00065 1.4E-08 50.6 6.9 36 48-83 46-81 (238)
263 COG2384 Predicted SAM-dependen 97.4 0.0022 4.8E-08 48.7 9.3 82 47-136 13-94 (226)
264 KOG0024|consensus 97.3 0.0029 6.4E-08 50.8 9.7 105 48-162 167-277 (354)
265 PF04672 Methyltransf_19: S-ad 97.3 0.0054 1.2E-07 48.3 11.1 106 52-162 70-194 (267)
266 COG1064 AdhP Zn-dependent alco 97.3 0.0019 4.1E-08 52.6 8.9 94 48-160 164-261 (339)
267 KOG1562|consensus 97.3 0.0018 3.8E-08 51.3 7.9 110 48-160 119-238 (337)
268 PF04989 CmcI: Cephalosporin h 97.2 0.0059 1.3E-07 46.2 10.2 116 33-157 17-146 (206)
269 PF11968 DUF3321: Putative met 97.2 0.0012 2.5E-08 50.2 6.3 104 32-160 31-151 (219)
270 PF07091 FmrO: Ribosomal RNA m 97.2 0.0042 9.1E-08 48.3 9.4 92 37-139 92-183 (251)
271 PF02005 TRM: N2,N2-dimethylgu 97.2 0.006 1.3E-07 50.7 10.7 106 49-159 48-155 (377)
272 PF01861 DUF43: Protein of unk 97.1 0.038 8.1E-07 42.8 13.7 104 49-161 43-152 (243)
273 KOG3201|consensus 97.1 0.00043 9.4E-09 50.0 2.9 110 49-162 28-144 (201)
274 PRK11524 putative methyltransf 96.8 0.0056 1.2E-07 49.0 7.3 56 36-97 197-252 (284)
275 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0064 1.4E-07 46.4 7.1 54 34-93 178-231 (231)
276 COG3129 Predicted SAM-dependen 96.7 0.016 3.5E-07 44.5 8.6 104 34-144 58-170 (292)
277 COG5459 Predicted rRNA methyla 96.7 0.0027 5.9E-08 51.5 4.7 105 51-162 114-229 (484)
278 cd08237 ribitol-5-phosphate_DH 96.7 0.023 5.1E-07 46.5 10.2 93 48-159 161-257 (341)
279 PF05711 TylF: Macrocin-O-meth 96.7 0.085 1.9E-06 41.3 12.6 127 31-161 53-215 (248)
280 PRK09880 L-idonate 5-dehydroge 96.6 0.019 4E-07 47.1 8.9 97 48-159 167-267 (343)
281 PF00107 ADH_zinc_N: Zinc-bind 96.5 0.0051 1.1E-07 42.8 4.8 88 60-161 1-92 (130)
282 COG1867 TRM1 N2,N2-dimethylgua 96.4 0.032 6.9E-07 45.7 9.1 101 51-159 53-155 (380)
283 PRK09424 pntA NAD(P) transhydr 96.4 0.043 9.3E-07 47.5 10.1 107 49-159 163-286 (509)
284 PF11599 AviRa: RRNA methyltra 96.3 0.0076 1.6E-07 45.7 4.7 66 32-97 30-99 (246)
285 PRK13699 putative methylase; P 96.3 0.017 3.8E-07 44.6 6.9 56 36-97 152-207 (227)
286 KOG2793|consensus 96.2 0.049 1.1E-06 42.5 9.0 109 50-161 86-202 (248)
287 cd00401 AdoHcyase S-adenosyl-L 96.2 0.11 2.5E-06 43.7 11.5 99 37-158 189-289 (413)
288 TIGR03451 mycoS_dep_FDH mycoth 96.1 0.042 9E-07 45.3 8.5 102 48-159 174-277 (358)
289 COG4627 Uncharacterized protei 96.1 0.0048 1E-07 44.4 2.4 45 116-162 38-90 (185)
290 cd08281 liver_ADH_like1 Zinc-d 96.0 0.056 1.2E-06 44.8 9.0 101 48-159 189-291 (371)
291 cd08230 glucose_DH Glucose deh 95.9 0.07 1.5E-06 43.9 9.1 97 48-159 170-270 (355)
292 KOG1099|consensus 95.9 0.036 7.9E-07 42.6 6.4 96 49-162 40-167 (294)
293 COG4301 Uncharacterized conser 95.8 0.22 4.7E-06 38.9 10.7 152 3-161 32-196 (321)
294 cd08283 FDH_like_1 Glutathione 95.8 0.063 1.4E-06 44.8 8.6 101 48-158 182-306 (386)
295 TIGR02822 adh_fam_2 zinc-bindi 95.8 0.15 3.2E-06 41.6 10.6 92 48-159 163-255 (329)
296 cd00315 Cyt_C5_DNA_methylase C 95.8 0.029 6.2E-07 44.7 6.2 72 53-138 2-73 (275)
297 KOG0822|consensus 95.8 0.054 1.2E-06 46.4 8.0 116 37-160 349-480 (649)
298 cd08254 hydroxyacyl_CoA_DH 6-h 95.8 0.15 3.2E-06 41.3 10.4 100 48-159 163-264 (338)
299 PF10354 DUF2431: Domain of un 95.7 0.059 1.3E-06 39.6 7.1 119 57-180 3-147 (166)
300 PF02636 Methyltransf_28: Puta 95.7 0.041 8.9E-07 43.2 6.6 47 51-97 19-72 (252)
301 PHA01634 hypothetical protein 95.7 0.036 7.8E-07 38.6 5.3 47 49-97 27-73 (156)
302 KOG1501|consensus 95.6 0.06 1.3E-06 45.2 7.3 57 52-114 68-124 (636)
303 TIGR01202 bchC 2-desacetyl-2-h 95.6 0.13 2.9E-06 41.4 9.4 89 49-159 143-232 (308)
304 PF10237 N6-adenineMlase: Prob 95.6 0.32 6.9E-06 35.6 10.3 110 34-161 9-126 (162)
305 cd05188 MDR Medium chain reduc 95.6 0.27 5.8E-06 38.2 10.8 102 48-160 132-234 (271)
306 TIGR03366 HpnZ_proposed putati 95.5 0.12 2.6E-06 41.0 8.9 99 48-159 118-219 (280)
307 TIGR00497 hsdM type I restrict 95.4 0.39 8.5E-06 41.7 12.2 70 27-96 194-266 (501)
308 COG1565 Uncharacterized conser 95.4 0.084 1.8E-06 43.3 7.5 81 18-98 35-132 (370)
309 KOG1098|consensus 95.2 0.018 3.9E-07 50.1 3.1 65 18-85 15-79 (780)
310 cd08239 THR_DH_like L-threonin 95.2 0.17 3.6E-06 41.2 8.7 98 48-159 161-263 (339)
311 KOG2798|consensus 95.1 0.17 3.8E-06 40.7 8.2 48 37-87 131-184 (369)
312 KOG2352|consensus 95.1 0.046 9.9E-07 46.4 5.2 108 49-162 294-420 (482)
313 PLN02740 Alcohol dehydrogenase 94.8 0.25 5.3E-06 41.2 8.8 99 47-159 195-301 (381)
314 PRK10309 galactitol-1-phosphat 94.7 0.25 5.5E-06 40.4 8.6 98 48-158 158-260 (347)
315 KOG1253|consensus 94.5 0.055 1.2E-06 46.0 4.3 107 48-159 107-217 (525)
316 PF07757 AdoMet_MTase: Predict 94.4 0.083 1.8E-06 35.7 4.1 44 37-83 43-88 (112)
317 TIGR00936 ahcY adenosylhomocys 94.4 0.8 1.7E-05 38.6 10.9 90 48-159 192-283 (406)
318 cd08285 NADP_ADH NADP(H)-depen 94.2 0.38 8.3E-06 39.4 8.6 101 48-158 164-266 (351)
319 PRK11524 putative methyltransf 94.2 0.1 2.2E-06 41.7 5.1 53 106-159 7-81 (284)
320 PLN02827 Alcohol dehydrogenase 94.2 0.37 7.9E-06 40.1 8.5 100 48-158 191-295 (378)
321 PLN03154 putative allyl alcoho 94.1 1.5 3.2E-05 36.1 12.0 98 48-158 156-258 (348)
322 cd05278 FDH_like Formaldehyde 94.0 0.47 1E-05 38.6 8.9 101 48-158 165-267 (347)
323 TIGR02825 B4_12hDH leukotriene 94.0 1.3 2.7E-05 35.8 11.3 98 48-158 136-237 (325)
324 TIGR02818 adh_III_F_hyde S-(hy 93.9 0.78 1.7E-05 38.0 10.0 101 48-159 183-288 (368)
325 PF03141 Methyltransf_29: Puta 93.8 0.06 1.3E-06 45.9 3.2 87 52-157 367-466 (506)
326 cd08261 Zn_ADH7 Alcohol dehydr 93.7 0.48 1E-05 38.5 8.4 102 47-158 156-258 (337)
327 PLN02586 probable cinnamyl alc 93.7 0.66 1.4E-05 38.3 9.2 96 48-158 181-278 (360)
328 cd08233 butanediol_DH_like (2R 93.7 0.53 1.2E-05 38.5 8.6 101 48-159 170-273 (351)
329 PF00145 DNA_methylase: C-5 cy 93.6 0.12 2.6E-06 41.8 4.5 70 53-137 2-71 (335)
330 COG0604 Qor NADPH:quinone redu 93.5 0.99 2.2E-05 36.9 9.8 102 48-161 140-244 (326)
331 cd08294 leukotriene_B4_DH_like 93.5 1 2.2E-05 36.2 9.9 96 48-157 141-240 (329)
332 KOG3924|consensus 93.5 0.28 6E-06 40.7 6.3 123 34-159 178-309 (419)
333 TIGR03201 dearomat_had 6-hydro 93.5 0.64 1.4E-05 38.1 8.7 101 48-159 164-273 (349)
334 PRK05476 S-adenosyl-L-homocyst 93.3 0.69 1.5E-05 39.3 8.7 88 49-158 210-299 (425)
335 PF02254 TrkA_N: TrkA-N domain 93.3 0.89 1.9E-05 30.7 7.9 92 59-162 4-100 (116)
336 KOG1227|consensus 93.2 0.04 8.7E-07 43.9 1.2 100 49-157 193-295 (351)
337 cd08277 liver_alcohol_DH_like 93.2 1.1 2.5E-05 36.9 9.8 101 48-159 182-287 (365)
338 KOG2651|consensus 93.2 0.35 7.6E-06 40.0 6.4 42 49-92 152-193 (476)
339 cd08238 sorbose_phosphate_red 93.1 1.2 2.5E-05 37.6 9.9 108 48-158 173-288 (410)
340 cd08255 2-desacetyl-2-hydroxye 93.1 1 2.2E-05 35.3 9.1 96 48-159 95-191 (277)
341 cd08300 alcohol_DH_class_III c 93.1 1.3 2.9E-05 36.6 10.1 100 48-159 184-289 (368)
342 PF06859 Bin3: Bicoid-interact 93.0 0.082 1.8E-06 35.8 2.2 35 128-162 2-48 (110)
343 cd08232 idonate-5-DH L-idonate 92.9 1.4 3E-05 35.8 9.8 97 50-158 165-262 (339)
344 TIGR02819 fdhA_non_GSH formald 92.8 0.95 2.1E-05 38.0 8.9 99 48-159 183-300 (393)
345 PRK01747 mnmC bifunctional tRN 92.8 0.93 2E-05 40.8 9.4 108 50-159 57-207 (662)
346 KOG2078|consensus 92.8 0.13 2.9E-06 43.0 3.6 62 47-114 246-307 (495)
347 KOG2360|consensus 92.6 0.37 8.1E-06 39.9 5.9 62 48-114 211-272 (413)
348 PLN02494 adenosylhomocysteinas 92.6 1.3 2.7E-05 38.1 9.3 100 37-159 241-342 (477)
349 cd08301 alcohol_DH_plants Plan 92.5 1.6 3.4E-05 36.1 9.7 98 48-159 185-290 (369)
350 cd08234 threonine_DH_like L-th 92.5 1 2.2E-05 36.4 8.5 97 48-159 157-258 (334)
351 PRK13699 putative methylase; P 92.4 0.26 5.7E-06 38.1 4.7 19 139-157 53-71 (227)
352 PLN02514 cinnamyl-alcohol dehy 92.4 1.8 3.9E-05 35.6 10.0 96 49-158 179-275 (357)
353 PF07279 DUF1442: Protein of u 92.3 4 8.8E-05 31.2 11.8 116 32-156 25-146 (218)
354 cd08242 MDR_like Medium chain 92.2 2 4.4E-05 34.5 9.9 91 48-157 153-244 (319)
355 cd08286 FDH_like_ADH2 formalde 92.0 3.1 6.7E-05 33.8 10.9 101 48-158 164-266 (345)
356 cd08278 benzyl_alcohol_DH Benz 92.0 1.3 2.7E-05 36.7 8.6 98 48-159 184-286 (365)
357 cd08293 PTGR2 Prostaglandin re 92.0 5.6 0.00012 32.3 12.4 96 48-158 150-254 (345)
358 TIGR00561 pntA NAD(P) transhyd 91.9 2.5 5.4E-05 36.8 10.3 108 50-160 163-286 (511)
359 PRK10083 putative oxidoreducta 91.8 1.8 3.8E-05 35.1 9.2 101 48-159 158-260 (339)
360 PF03492 Methyltransf_7: SAM d 91.7 3.3 7.2E-05 34.0 10.5 22 49-70 15-36 (334)
361 COG4017 Uncharacterized protei 91.6 1 2.2E-05 33.8 6.6 90 48-161 42-132 (254)
362 cd08295 double_bond_reductase_ 91.5 4.2 9.2E-05 33.0 11.2 98 48-158 149-251 (338)
363 cd05285 sorbitol_DH Sorbitol d 91.5 1.7 3.8E-05 35.3 8.8 98 48-159 160-266 (343)
364 COG1062 AdhC Zn-dependent alco 91.4 6.5 0.00014 32.4 11.6 111 38-163 175-290 (366)
365 cd08245 CAD Cinnamyl alcohol d 91.3 3.8 8.3E-05 33.0 10.6 96 48-158 160-256 (330)
366 PF11312 DUF3115: Protein of u 91.2 0.89 1.9E-05 36.8 6.5 106 52-157 88-241 (315)
367 PLN02178 cinnamyl-alcohol dehy 90.8 2.8 6E-05 34.9 9.5 94 49-158 177-273 (375)
368 PRK08306 dipicolinate synthase 90.8 4.4 9.6E-05 32.7 10.3 93 50-162 151-245 (296)
369 cd05279 Zn_ADH1 Liver alcohol 90.7 3.7 8E-05 33.9 10.1 101 48-159 181-286 (365)
370 COG0270 Dcm Site-specific DNA 90.7 1 2.3E-05 36.8 6.7 77 51-139 3-79 (328)
371 cd08298 CAD2 Cinnamyl alcohol 90.6 4.6 0.0001 32.5 10.5 91 48-158 165-256 (329)
372 PF05050 Methyltransf_21: Meth 90.6 0.71 1.5E-05 33.1 5.2 39 56-94 1-42 (167)
373 TIGR00692 tdh L-threonine 3-de 90.5 3.9 8.4E-05 33.2 10.0 101 48-159 159-262 (340)
374 cd08240 6_hydroxyhexanoate_dh_ 90.4 5.3 0.00012 32.5 10.8 95 49-157 174-273 (350)
375 COG1568 Predicted methyltransf 90.3 1.9 4.1E-05 34.4 7.4 103 50-160 152-262 (354)
376 KOG2912|consensus 90.1 1.5 3.2E-05 35.7 6.8 79 54-137 106-188 (419)
377 cd08296 CAD_like Cinnamyl alco 90.0 3.4 7.3E-05 33.5 9.3 98 48-159 161-260 (333)
378 PTZ00075 Adenosylhomocysteinas 90.0 1.5 3.2E-05 37.7 7.2 90 49-160 252-343 (476)
379 PF03269 DUF268: Caenorhabditi 90.0 0.76 1.7E-05 33.5 4.6 24 140-163 93-116 (177)
380 TIGR00675 dcm DNA-methyltransf 89.7 0.75 1.6E-05 37.4 5.1 41 54-96 1-41 (315)
381 cd08236 sugar_DH NAD(P)-depend 89.5 2.6 5.6E-05 34.2 8.2 97 48-158 157-258 (343)
382 KOG0023|consensus 89.4 1.7 3.7E-05 35.4 6.7 101 48-161 179-282 (360)
383 cd05281 TDH Threonine dehydrog 89.3 3.9 8.5E-05 33.2 9.1 100 48-158 161-262 (341)
384 COG3510 CmcI Cephalosporin hyd 89.2 2.6 5.6E-05 31.8 7.0 117 32-160 53-182 (237)
385 cd08263 Zn_ADH10 Alcohol dehyd 89.0 6.3 0.00014 32.4 10.2 98 48-159 185-288 (367)
386 cd08231 MDR_TM0436_like Hypoth 88.8 10 0.00022 31.1 11.3 99 49-158 176-280 (361)
387 cd08279 Zn_ADH_class_III Class 88.8 7.2 0.00016 32.1 10.4 98 48-158 180-282 (363)
388 cd08265 Zn_ADH3 Alcohol dehydr 88.6 3.7 8.1E-05 34.1 8.7 102 47-158 200-307 (384)
389 COG1255 Uncharacterized protei 88.6 6.2 0.00013 27.1 9.6 91 52-163 15-107 (129)
390 PF05206 TRM13: Methyltransfer 88.4 1.6 3.4E-05 34.6 5.9 39 48-86 16-58 (259)
391 cd05284 arabinose_DH_like D-ar 88.1 5.1 0.00011 32.4 9.0 98 48-158 165-266 (340)
392 PRK09422 ethanol-active dehydr 88.1 4.9 0.00011 32.5 8.9 98 48-158 160-261 (338)
393 PRK05396 tdh L-threonine 3-deh 87.8 4.7 0.0001 32.7 8.7 103 48-160 161-265 (341)
394 PTZ00357 methyltransferase; Pr 87.4 5.4 0.00012 36.1 8.9 101 53-153 703-830 (1072)
395 PLN02702 L-idonate 5-dehydroge 87.0 6.8 0.00015 32.2 9.2 101 48-158 179-285 (364)
396 PF03686 UPF0146: Uncharacteri 86.9 2.7 5.9E-05 29.3 5.6 91 50-162 13-106 (127)
397 PF12692 Methyltransf_17: S-ad 86.9 2.4 5.3E-05 30.5 5.4 36 49-85 27-62 (160)
398 cd08284 FDH_like_2 Glutathione 86.6 7.4 0.00016 31.5 9.2 100 48-158 165-266 (344)
399 COG0686 Ald Alanine dehydrogen 86.5 5.5 0.00012 32.4 7.8 94 52-159 169-269 (371)
400 cd05283 CAD1 Cinnamyl alcohol 86.3 9.6 0.00021 30.9 9.7 97 48-159 167-264 (337)
401 cd08260 Zn_ADH6 Alcohol dehydr 86.2 9.5 0.00021 30.9 9.6 98 48-158 163-264 (345)
402 cd08256 Zn_ADH2 Alcohol dehydr 86.2 5.1 0.00011 32.7 8.0 97 48-157 172-273 (350)
403 PF11899 DUF3419: Protein of u 86.1 2.5 5.4E-05 35.4 6.1 56 36-96 23-78 (380)
404 PRK08324 short chain dehydroge 85.9 14 0.00029 33.6 11.1 79 50-136 421-507 (681)
405 COG0863 DNA modification methy 85.6 4.1 9E-05 32.4 7.1 47 48-97 220-266 (302)
406 cd08297 CAD3 Cinnamyl alcohol 85.4 7.8 0.00017 31.4 8.8 100 48-159 163-266 (341)
407 KOG2782|consensus 85.4 1 2.2E-05 34.6 3.2 60 34-96 29-88 (303)
408 cd08287 FDH_like_ADH3 formalde 85.3 7.7 0.00017 31.5 8.7 98 48-158 166-268 (345)
409 cd08241 QOR1 Quinone oxidoredu 85.2 17 0.00036 28.7 10.9 100 48-158 137-238 (323)
410 KOG0022|consensus 85.1 3.2 7E-05 33.8 6.0 108 39-160 183-296 (375)
411 PRK05562 precorrin-2 dehydroge 85.0 9.1 0.0002 29.6 8.3 94 49-160 23-118 (223)
412 cd08235 iditol_2_DH_like L-idi 85.0 6.5 0.00014 31.8 8.1 97 48-158 163-265 (343)
413 PF02826 2-Hacid_dh_C: D-isome 85.0 3.3 7.2E-05 30.6 5.8 89 49-159 34-128 (178)
414 KOG2920|consensus 84.9 1.5 3.3E-05 34.9 4.0 51 36-88 101-152 (282)
415 TIGR01470 cysG_Nterm siroheme 84.9 9.3 0.0002 29.0 8.3 91 50-160 8-102 (205)
416 PRK10458 DNA cytosine methylas 84.8 7.5 0.00016 33.6 8.5 43 51-95 88-130 (467)
417 cd08289 MDR_yhfp_like Yhfp put 84.7 9.2 0.0002 30.6 8.8 94 50-159 146-244 (326)
418 TIGR00518 alaDH alanine dehydr 84.7 9.1 0.0002 31.9 8.9 99 50-162 166-271 (370)
419 cd08269 Zn_ADH9 Alcohol dehydr 84.3 8.7 0.00019 30.5 8.4 98 48-159 127-230 (312)
420 PRK05786 fabG 3-ketoacyl-(acyl 84.2 16 0.00035 27.7 10.7 57 51-115 5-62 (238)
421 cd08266 Zn_ADH_like1 Alcohol d 84.2 20 0.00042 28.6 10.6 101 48-159 164-266 (342)
422 COG1748 LYS9 Saccharopine dehy 83.6 10 0.00022 31.9 8.6 78 52-140 2-81 (389)
423 COG2961 ComJ Protein involved 83.3 21 0.00045 28.2 9.6 113 32-159 72-196 (279)
424 PF02153 PDH: Prephenate dehyd 83.2 8.4 0.00018 30.3 7.7 73 66-157 3-78 (258)
425 cd08262 Zn_ADH8 Alcohol dehydr 82.7 23 0.00049 28.6 10.4 99 48-159 159-265 (341)
426 PF01488 Shikimate_DH: Shikima 82.5 14 0.00031 25.8 8.6 74 50-138 11-86 (135)
427 cd08291 ETR_like_1 2-enoyl thi 82.4 8.8 0.00019 30.9 7.8 94 51-159 144-243 (324)
428 KOG1198|consensus 81.3 13 0.00028 30.8 8.3 102 48-161 155-259 (347)
429 COG0287 TyrA Prephenate dehydr 81.0 16 0.00034 29.3 8.5 87 52-155 4-95 (279)
430 KOG1197|consensus 80.9 27 0.00058 27.9 10.5 99 47-157 143-244 (336)
431 PLN02668 indole-3-acetate carb 80.3 1.4 3E-05 36.9 2.4 18 145-162 224-241 (386)
432 KOG0821|consensus 79.4 3.6 7.8E-05 31.8 4.1 42 50-93 50-91 (326)
433 PF08484 Methyltransf_14: C-me 79.1 6.5 0.00014 28.6 5.4 102 40-159 57-160 (160)
434 COG1179 Dinucleotide-utilizing 79.0 22 0.00047 28.0 8.3 34 51-85 30-64 (263)
435 PF03514 GRAS: GRAS domain fam 78.8 38 0.00081 28.4 10.5 58 38-97 100-167 (374)
436 cd08282 PFDH_like Pseudomonas 78.8 17 0.00036 30.1 8.5 98 48-157 174-284 (375)
437 PRK08293 3-hydroxybutyryl-CoA 78.8 26 0.00055 28.0 9.2 42 52-95 4-46 (287)
438 TIGR02853 spore_dpaA dipicolin 78.2 14 0.0003 29.7 7.5 90 50-159 150-241 (287)
439 cd08258 Zn_ADH4 Alcohol dehydr 78.2 20 0.00042 28.7 8.5 101 48-160 162-266 (306)
440 PF01408 GFO_IDH_MocA: Oxidore 78.1 18 0.00039 24.3 8.9 92 53-160 2-95 (120)
441 PRK15116 sulfur acceptor prote 78.1 33 0.00071 27.4 9.4 34 50-84 29-63 (268)
442 PRK15001 SAM-dependent 23S rib 77.9 32 0.00068 28.9 9.7 90 53-157 47-141 (378)
443 cd05286 QOR2 Quinone oxidoredu 76.9 34 0.00073 26.8 9.8 97 48-159 134-236 (320)
444 PF14314 Methyltrans_Mon: Viru 76.5 24 0.00053 31.9 9.0 116 34-161 309-459 (675)
445 KOG2539|consensus 76.4 10 0.00022 32.6 6.3 107 51-162 201-319 (491)
446 PF05575 V_cholerae_RfbT: Vibr 76.1 5.5 0.00012 29.4 4.1 56 40-96 69-124 (286)
447 PRK07502 cyclohexadienyl dehyd 76.0 29 0.00064 27.9 8.9 87 52-155 7-97 (307)
448 cd00755 YgdL_like Family of ac 75.9 22 0.00047 27.7 7.7 34 51-85 11-45 (231)
449 PF01262 AlaDh_PNT_C: Alanine 75.8 5.9 0.00013 28.9 4.4 45 50-96 19-64 (168)
450 PRK07530 3-hydroxybutyryl-CoA 75.8 27 0.00059 27.8 8.6 99 52-160 5-121 (292)
451 cd08244 MDR_enoyl_red Possible 75.6 39 0.00084 26.9 10.0 97 48-159 140-242 (324)
452 PRK00066 ldh L-lactate dehydro 75.3 36 0.00078 27.7 9.2 40 49-88 4-44 (315)
453 PRK05808 3-hydroxybutyryl-CoA 75.2 23 0.00049 28.1 8.0 98 53-161 5-121 (282)
454 PRK05867 short chain dehydroge 75.1 19 0.00042 27.7 7.5 80 50-136 8-95 (253)
455 PRK09260 3-hydroxybutyryl-CoA 75.0 23 0.0005 28.2 8.0 41 53-95 3-44 (288)
456 cd08292 ETR_like_2 2-enoyl thi 74.9 21 0.00046 28.4 7.9 96 48-158 137-238 (324)
457 cd05280 MDR_yhdh_yhfp Yhdh and 74.9 27 0.00058 27.8 8.5 94 51-159 147-244 (325)
458 PRK07677 short chain dehydroge 74.7 22 0.00047 27.4 7.6 56 52-114 2-58 (252)
459 cd05213 NAD_bind_Glutamyl_tRNA 74.6 44 0.00096 27.1 9.7 96 49-162 176-276 (311)
460 PRK07417 arogenate dehydrogena 74.5 29 0.00062 27.6 8.4 38 53-93 2-41 (279)
461 PRK06172 short chain dehydroge 74.5 22 0.00048 27.3 7.6 80 50-136 6-93 (253)
462 PRK09496 trkA potassium transp 74.4 53 0.0011 27.9 11.8 92 32-135 212-305 (453)
463 PRK06701 short chain dehydroge 74.3 42 0.00091 26.7 9.9 57 51-114 46-104 (290)
464 cd08274 MDR9 Medium chain dehy 73.6 40 0.00086 27.2 9.3 94 48-157 175-272 (350)
465 PTZ00354 alcohol dehydrogenase 73.1 37 0.00081 27.0 8.9 98 48-158 138-240 (334)
466 PF02086 MethyltransfD12: D12 72.9 4.2 9.1E-05 31.7 3.2 56 36-96 8-63 (260)
467 cd08299 alcohol_DH_class_I_II_ 72.8 53 0.0012 27.2 10.5 100 48-159 188-293 (373)
468 PF06690 DUF1188: Protein of u 72.8 39 0.00086 26.4 8.2 87 52-162 43-130 (252)
469 PF12242 Eno-Rase_NADH_b: NAD( 72.5 22 0.00047 22.5 6.0 35 49-83 37-72 (78)
470 cd08252 AL_MDR Arginate lyase 72.3 46 0.00099 26.7 9.3 95 51-158 150-248 (336)
471 PRK07066 3-hydroxybutyryl-CoA 72.2 45 0.00098 27.3 9.1 99 52-159 8-120 (321)
472 PRK08217 fabG 3-ketoacyl-(acyl 72.1 28 0.0006 26.5 7.7 58 50-114 4-62 (253)
473 PRK08267 short chain dehydroge 71.7 28 0.0006 26.9 7.6 75 53-136 3-86 (260)
474 COG2933 Predicted SAM-dependen 71.7 9.7 0.00021 30.3 4.8 37 46-85 207-243 (358)
475 PRK06139 short chain dehydroge 71.6 24 0.00051 28.9 7.4 80 50-136 6-93 (330)
476 PRK07890 short chain dehydroge 71.6 32 0.0007 26.4 8.0 80 50-136 4-91 (258)
477 TIGR02823 oxido_YhdH putative 71.3 50 0.0011 26.3 9.7 95 48-158 142-241 (323)
478 PRK10637 cysG siroheme synthas 70.9 50 0.0011 28.4 9.5 94 50-161 11-106 (457)
479 PRK07806 short chain dehydroge 70.9 44 0.00096 25.4 10.2 58 50-114 5-64 (248)
480 PF11899 DUF3419: Protein of u 70.6 16 0.00035 30.7 6.3 56 106-162 275-338 (380)
481 PRK05708 2-dehydropantoate 2-r 70.2 41 0.00089 27.1 8.4 99 52-162 3-108 (305)
482 PF01210 NAD_Gly3P_dh_N: NAD-d 70.2 37 0.00081 24.3 8.2 98 53-158 1-103 (157)
483 PRK06223 malate dehydrogenase; 70.1 52 0.0011 26.5 9.0 36 52-88 3-39 (307)
484 TIGR02356 adenyl_thiF thiazole 70.1 45 0.00097 25.2 10.4 33 51-84 21-54 (202)
485 KOG1209|consensus 70.0 11 0.00024 29.1 4.6 74 49-136 5-90 (289)
486 PRK07819 3-hydroxybutyryl-CoA 70.0 34 0.00074 27.4 7.9 43 52-96 6-49 (286)
487 cd08246 crotonyl_coA_red croto 69.8 61 0.0013 26.9 9.7 106 48-158 191-315 (393)
488 PF04378 RsmJ: Ribosomal RNA s 69.4 25 0.00054 27.6 6.7 111 34-159 43-165 (245)
489 cd05289 MDR_like_2 alcohol deh 69.4 52 0.0011 25.6 9.7 96 48-159 142-239 (309)
490 cd08276 MDR7 Medium chain dehy 69.3 56 0.0012 26.0 10.7 99 48-159 158-260 (336)
491 PF02719 Polysacc_synt_2: Poly 69.1 14 0.0003 29.8 5.3 78 57-139 3-89 (293)
492 PF02737 3HCDH_N: 3-hydroxyacy 69.0 16 0.00034 27.1 5.4 99 53-161 1-117 (180)
493 cd05195 enoyl_red enoyl reduct 68.9 50 0.0011 25.3 10.2 103 48-159 106-210 (293)
494 PF05430 Methyltransf_30: S-ad 68.8 4.6 9.9E-05 28.1 2.3 51 107-159 32-91 (124)
495 COG5379 BtaA S-adenosylmethion 68.6 18 0.0004 29.3 5.8 46 48-96 61-106 (414)
496 PRK06194 hypothetical protein; 68.5 33 0.00072 26.9 7.5 79 51-136 6-92 (287)
497 PRK07063 short chain dehydroge 68.5 37 0.00081 26.1 7.8 81 51-136 7-95 (260)
498 KOG1202|consensus 68.4 19 0.00042 35.0 6.6 102 47-157 1549-1654(2376)
499 PRK03659 glutathione-regulated 67.7 41 0.00089 30.1 8.5 97 52-162 401-502 (601)
500 TIGR02817 adh_fam_1 zinc-bindi 67.3 63 0.0014 25.9 10.6 94 51-157 149-246 (336)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-30 Score=190.90 Aligned_cols=176 Identities=39% Similarity=0.551 Sum_probs=161.5
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.+ ..+|.|.+.+++.++.++.|.+.+.|++.|. +.++.+|||||||+|+.+..+++..+ +|+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~ 98 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVV 98 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEE
Confidence 57899999999999 9999999999999999999999999999998 99999999999999999999999875 999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc----cccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEE
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF----WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~ 155 (206)
++|+.+...+.|++++.. .+..|+.++++| +++..|| |.|++....+.+++.+.+.|++||+++
T Consensus 99 siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPy-------D~I~Vtaaa~~vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 99 SIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPY-------DRIIVTAAAPEVPEALLDQLKPGGRLV 166 (209)
T ss_pred EEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCc-------CEEEEeeccCCCCHHHHHhcccCCEEE
Confidence 999999999999999998 556689999999 4444555 999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 156 MPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
+..... ..+.+.++.+...+.|.. +.++.+.|.|+.+.
T Consensus 167 ~PvG~~-~~q~l~~~~k~~~~~~~~-~~l~~v~~vPl~~~ 204 (209)
T COG2518 167 IPVGSG-PAQRLLRITKDGDGNFER-RDLFNVRFVPLVGG 204 (209)
T ss_pred EEEccC-CcEEEEEEEEcCCCcEEE-eeeccceeeecCCc
Confidence 999844 358899999988888999 99999999999883
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.97 E-value=1.4e-29 Score=191.99 Aligned_cols=184 Identities=36% Similarity=0.481 Sum_probs=151.1
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.. ..+|.|.+.+++.++.++.|.+++.+++.+. ++++.+|||||||+|+.+..++...++.++|+
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv 101 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV 101 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEE
Confidence 68999999999998 9999999999999999999999999999998 99999999999999999999999988888999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+.+...+.|++++.. .+..++.++.+|.....+ ..+.||.|++....+.++..+.+.|++||++++...
T Consensus 102 ~vE~~~~l~~~A~~~l~~-----~~~~nv~~~~gdg~~g~~---~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 102 SVERDPELAERARRNLAR-----LGIDNVEVVVGDGSEGWP---EEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEESBHHHHHHHHHHHHH-----HTTHSEEEEES-GGGTTG---GG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred EECccHHHHHHHHHHHHH-----hccCceeEEEcchhhccc---cCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence 999999999999999987 344689999999322111 234569999999999999999999999999999988
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
. ...+.+.++.|..++.|.. +....+.|.|+.+.+
T Consensus 174 ~-~~~~~l~~~~k~~~g~~~~-~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 174 Q-GGSQRLVRITKKGDGEFSR-EELFPVRFVPLVGGE 208 (209)
T ss_dssp S-SSSEEEEEEEEETTTEEEE-EEEEEE---B-BSCC
T ss_pred c-CCceEEEEEEEeCCCcEEE-EEEeeEEEEeccCCC
Confidence 7 5669999999999899999 999999999998754
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.95 E-value=9.9e-27 Score=177.91 Aligned_cols=181 Identities=32% Similarity=0.422 Sum_probs=156.2
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|... ..+|.|.+.+++.++.++.|.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEE
Confidence 68999999999998 9999999999999999999999999999997 88999999999999999999998876667999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++++++.+++++... +..+++++.+|... ... +.+.||+|++....+.+++.+.+.|+|||++++...
T Consensus 106 ~vE~~~~~~~~a~~~l~~~-----g~~~v~~~~gd~~~-~~~--~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 106 TIERIPELAEKAKKTLKKL-----GYDNVEVIVGDGTL-GYE--ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred EEeCCHHHHHHHHHHHHHc-----CCCCeEEEECCccc-CCC--cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEc
Confidence 9999999999999999873 34579999999322 122 456789999998888889999999999999999876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
.. .+.+.++.+.. +.+.. ..++.+.|.|+.+.
T Consensus 178 ~~--~~~~~~~~~~~-~~~~~-~~~~~~~f~~~~~~ 209 (212)
T PRK13942 178 SY--SQELIRVEKDN-GKIIK-KKLGEVAFVPLIGK 209 (212)
T ss_pred CC--CcEEEEEEEEC-CEEEE-EEeccEEEEecccC
Confidence 54 47777777754 66888 89999999998764
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.95 E-value=4.7e-26 Score=173.42 Aligned_cols=181 Identities=34% Similarity=0.376 Sum_probs=152.0
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+|+.. ..+|.|.+.+++.++.++.|...+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEE
Confidence 68999999999988 8999999999999999999999999999886 77889999999999999999988775567999
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++...+. ..+++++.+|..+.. . ..+.||+|+++...+++++++.+.|+|||++++...
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~~~~~-~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLGY----WGVVEVYHGDGKRGL-E--KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCcccCC-c--cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEc
Confidence 999999999999999876321 135889999843221 1 345789999999999999999999999999998876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeecc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLY 193 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (206)
... .+.+..+.+. ++.|.. +.+..+.|.|+.
T Consensus 175 ~~~-~~~~~~~~~~-~~~~~~-~~~~~~~f~pl~ 205 (205)
T PRK13944 175 EGV-GQVLYKVVKR-GEKVEK-RAITYVLFVPLR 205 (205)
T ss_pred CCC-ceEEEEEEEe-CCEEEE-EEeceEEEEecC
Confidence 554 3666777775 456888 889999999873
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.95 E-value=7.9e-26 Score=173.50 Aligned_cols=184 Identities=35% Similarity=0.453 Sum_probs=156.6
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|++|||+.|+++.. ..+|.+.+.+++.++.++.|...+.+++.+. +.++.+|||+|||+|+.+..+++..++.++|+
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~ 106 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 67899999999988 8999999999999999999999999999987 78999999999999999999998876667899
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|.... .. ..+.||+|+++.....+++.+.+.|+|||++++...
T Consensus 107 ~vD~~~~~~~~A~~~~~~~-----g~~~v~~~~~d~~~~-~~--~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 107 SIERIPELAEKAERRLRKL-----GLDNVIVIVGDGTQG-WE--PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred EEeCCHHHHHHHHHHHHHC-----CCCCeEEEECCcccC-Cc--ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEc
Confidence 9999999999999999873 345789999984321 11 235679999999888899999999999999999876
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQ 198 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (206)
. ..+.+..+.+. .+.|.. ..+..+.|.|+.+...+
T Consensus 179 ~--~~~~~~~~~~~-~~~~~~-~~~~~~~~~pl~~~~~~ 213 (215)
T TIGR00080 179 E--YLQVLKRAEKR-GGEIII-KDVEPVAFVPLVGGEGF 213 (215)
T ss_pred C--CceEEEEEEEe-CCEEEE-EEeeeEEEEeCCCCccC
Confidence 6 34667777664 466888 99999999999876654
No 6
>KOG1661|consensus
Probab=99.93 E-value=4.5e-25 Score=162.31 Aligned_cols=194 Identities=41% Similarity=0.624 Sum_probs=170.8
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCc-eE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RV 78 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~-~v 78 (206)
|++++|..|.|..+ ..+|.|.++.+|++..++.|.+++.+.+.|..++.||.+.||+|+|+|+++..++...+..+ ..
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 68999999999998 99999999999999999999999999999999999999999999999999999987776444 45
Q ss_pred EEEeCCHHHHHHHHHhhhccC-----ccccCCCceEEEEcc----cccccccCCCCCCeeEEEecCChHHHHHHHHhccc
Q psy10573 79 YGVEHVMELAESSIKNIDKGN-----SELLDQGRVQFVAYF----WLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLV 149 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~i~~~~~d----~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~ 149 (206)
.|||.-++.++.+++++...- .+.....++.++.+| +.+..+| |.|.+.+....+++++...|+
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y-------DaIhvGAaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY-------DAIHVGAAASELPQELLDQLK 184 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc-------ceEEEccCccccHHHHHHhhc
Confidence 999999999999999998633 233456778899999 3344445 999999999999999999999
Q ss_pred CCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccccccccc
Q psy10573 150 PGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKY 202 (206)
Q Consensus 150 ~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (206)
+||.+++........++++...+...+.... +..++..++|+.++..++..+
T Consensus 185 ~gGrllip~~~~~~~q~~~~~dk~~~gki~~-~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 185 PGGRLLIPVGQDGGTQYLRQIDKNEDGKIKL-RTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cCCeEEEeecccCceeEEEeecccccCceee-eEeeceEEEeccccccccCCC
Confidence 9999999998766679999999999999999 999999999999998877543
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.92 E-value=6.5e-23 Score=157.07 Aligned_cols=180 Identities=31% Similarity=0.403 Sum_probs=150.3
Q ss_pred Cccccccccccccc-cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEE
Q psy10573 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (206)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~ 79 (206)
|+++||+.|+|+.. ..+|.|...+.+.++.++.|.....+++.+. +.++.+|||+|||+|..+..+++..+ +++
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~ 104 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVF 104 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEE
Confidence 57899999999887 8999999999999999999999999999886 78889999999999999988777643 899
Q ss_pred EEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 80 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++|+++.+++.+++++... +..+++++.+|..+. + .+.+.||+|+++...+.+++.+.+.|+|||++++...
T Consensus 105 ~vd~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~--~-~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 105 SVERIKTLQWEAKRRLKQL-----GLHNVSVRHGDGWKG--W-PAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEeCCHHHHHHHHHHHHHC-----CCCceEEEECCcccC--C-CcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence 9999999999999998873 334688998884221 1 0236789999999999999999999999999999987
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEEeeEEeeeccccc
Q psy10573 160 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196 (206)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
....+....+.+ .++.+.. ..++.+.|.|+.+..
T Consensus 177 -~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 177 -GEEQQLLTRVRK-RGGRFER-EVLEEVRFVPLVKGE 210 (212)
T ss_pred -CCCceEEEEEEE-cCCeEEE-EEEccEEEEecCCCC
Confidence 444466667766 4556888 889999999987643
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.88 E-value=1.1e-20 Score=151.98 Aligned_cols=182 Identities=24% Similarity=0.297 Sum_probs=140.2
Q ss_pred Cccccccccccccc--cCccccccccc-cCc---cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC
Q psy10573 1 MLRVDRKNFFTRVV--NEPYRIKSRQI-GYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (206)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~ 74 (206)
|++|||+.|+|+.. ..+|.|...+. +.+ +.++.|.+...+++.+. +.++.+|||+|||+|.++..+++..+.
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 68999999999976 77899998875 444 46678999999988886 788899999999999999999987754
Q ss_pred CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEE
Q psy10573 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154 (206)
Q Consensus 75 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l 154 (206)
.+.|+++|+++.+++.|++++... +..++.++.+|.... .. ..+.||+|+++...+..++.+.+.|+|||++
T Consensus 105 ~g~VvgVDis~~~l~~Ar~~l~~~-----g~~nV~~i~gD~~~~-~~--~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~L 176 (322)
T PRK13943 105 KGLVVSVEYSRKICEIAKRNVRRL-----GIENVIFVCGDGYYG-VP--EFAPYDVIFVTVGVDEVPETWFTQLKEGGRV 176 (322)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeCChhhc-cc--ccCCccEEEECCchHHhHHHHHHhcCCCCEE
Confidence 568999999999999999988763 335788998883322 11 2356799999999888888999999999999
Q ss_pred EEEecCC-CCCeeEEEEEecCCCceEEEEEEeeEEeeeccc
Q psy10573 155 VMPVGEP-FKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++..... ...+......+. .+.+.. ...+.+.+.+..+
T Consensus 177 vv~~~~~l~~~~~~~~~~r~-~~~~~~-~~~~~~~~l~~~G 215 (322)
T PRK13943 177 IVPINLKLSRRQPAFLFKKK-DPYLVG-NYKLETRFIKAGG 215 (322)
T ss_pred EEEeCCccCCCCceEEEEec-CCCceE-EEEEEeeEEcccc
Confidence 8876543 222334444443 445666 6667777777643
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=2.4e-18 Score=132.10 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=93.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+|.+|||+|||||-.+..+++..+ .++++++|+|+.|++.+++++.+.+ ..+++|+.+| .+.+|| ++++
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~d-Ae~LPf--~D~s 119 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGD-AENLPF--PDNS 119 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEec-hhhCCC--CCCc
Confidence 45899999999999999999999886 7899999999999999999998732 2349999999 777889 9999
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||++++..++++ .+++++|+|||||++++.-.+.+
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 999999888754 77999999999999988776654
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=4.7e-18 Score=131.39 Aligned_cols=114 Identities=27% Similarity=0.441 Sum_probs=82.7
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+. ..++.+|||+|||+|..+..+++..++.++|+++|+|+.+++.+++++... ...+++++.+| .+.
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~-----~~~~i~~v~~d-a~~ 109 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE-----GLQNIEFVQGD-AED 109 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-----T--SEEEEE-B-TTB
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-----CCCCeeEEEcC-HHH
Confidence 4445444 678899999999999999999988777889999999999999999998872 23489999999 666
Q ss_pred cccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++ ++++||+|++...++. .+++++++|||||++++...+.+
T Consensus 110 lp~--~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 110 LPF--PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp --S---TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred hcC--CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 888 9999999999877643 67999999999999998877655
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=1.7e-16 Score=109.20 Aligned_cols=101 Identities=28% Similarity=0.348 Sum_probs=81.1
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
|+.+|||+|||+|.++..+++.. +.++++++|+|+.+++.+++++.... ...+++++.+|+ ....- ..+.||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~-~~~~~--~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA-EFDPD--FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC-HGGTT--TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc-ccCcc--cCCCCC
Confidence 67899999999999999999865 67799999999999999999994421 247899999996 22222 245589
Q ss_pred EEEecC-ChH---------HHHHHHHhcccCCcEEEEEe
Q psy10573 130 VIQSCW-TKE---------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 130 ~i~~~~-~~~---------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|++.. ..+ .+++.+.+.|+|||++++..
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 322 25789999999999999874
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=6.6e-16 Score=121.74 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++..++.++++|+|+|+++++.|+++...... ....+++++.+| ....++ ++++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d-~~~lp~--~~~s 145 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGD-ATDLPF--DDCY 145 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcc-cccCCC--CCCC
Confidence 57789999999999999999888766667999999999999999877542100 112478999999 455667 8899
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...++ .+++++.++|||||++++..+..+
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 99999977654 367999999999999999877654
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=7e-16 Score=112.09 Aligned_cols=103 Identities=25% Similarity=0.332 Sum_probs=85.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--cCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--LTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~ 126 (206)
..+.+|||+|||+|.++..+++..++.++++|+|+++.+++.+++++.. ....+++++.+|..+ .+ + + +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~-l~~~~--~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIED-LPQEL--E-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTC-GCGCS--S-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhc-ccccc--C-C
Confidence 4578999999999999999996665778999999999999999998887 334589999999544 33 3 4 7
Q ss_pred CeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.||+|++..+++ .+++.+.+.|+++|++++..+.
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 899999987754 3678999999999999887665
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.69 E-value=1.9e-15 Score=110.79 Aligned_cols=124 Identities=31% Similarity=0.367 Sum_probs=104.4
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+..++.+.+..-.+..|. +.++..++|+|||+|..+..++ ..+|.+++|++|.++++++..+.|++. .+.+|
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n 85 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR-----FGVDN 85 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHH-----hCCCc
Confidence 344778888888888887 8999999999999999999999 556999999999999999999999998 45679
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++.++.++..+ +++ ++|.|++... .+.+++.+...|+|||++++......
T Consensus 86 ~~vv~g~Ap~~L~-~~~--~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 86 LEVVEGDAPEALP-DLP--SPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred EEEEeccchHhhc-CCC--CCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 9999999554333 112 6799999766 46689999999999999999877644
No 15
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.68 E-value=2.3e-15 Score=105.20 Aligned_cols=116 Identities=26% Similarity=0.305 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
..+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++... ...+++++.+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRF-----GVSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHh-----CCCceEEEec
Confidence 445566666664 6677899999999999999999876 5579999999999999999988763 2346888888
Q ss_pred ccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|....... ..++||+|++.... ..+++.+.+.|+|||.+++...
T Consensus 77 ~~~~~~~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 77 DAPEALED--SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cccccChh--hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 73322222 23578999987644 4588999999999999998754
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=2e-15 Score=116.97 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=91.3
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++... ...+++++.+|. .
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~-~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNA-M 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEech-h
Confidence 44555554 678899999999999999999988767779999999999999999988752 235789999984 3
Q ss_pred ccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..++ ++++||+|+++..++ .+++++.++|+|||.+++...+.+
T Consensus 107 ~~~~--~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 107 ELPF--DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cCCC--CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 3445 778999999876543 467889999999999988765543
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=2.3e-15 Score=100.10 Aligned_cols=89 Identities=30% Similarity=0.373 Sum_probs=72.5
Q ss_pred EEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEec
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC 134 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~ 134 (206)
||+|||+|..+..+++. +..+++++|+++.+++.++++... .++.++.+| ....++ ++++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d-~~~l~~--~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGD-AEDLPF--PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESB-TTSSSS---TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeeh-HHhCcc--ccccccccccc
Confidence 79999999999999987 345999999999999999998765 456688888 455577 89999999998
Q ss_pred CChHH------HHHHHHhcccCCcEEEE
Q psy10573 135 WTKEE------YNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 135 ~~~~~------~~~~~~~~L~~gG~l~~ 156 (206)
..+++ +++++.++|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 88754 67899999999999975
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=8.2e-15 Score=119.69 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. +++++|+|+++.+++.++++....+. ..+++++.+|. ...++ ++++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~-~~~~~--~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADA-LNQPF--EDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCc-ccCCC--CCCCc
Confidence 567899999999999999998865 35999999999999999988765321 24799999993 44566 88999
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|++...+++ +++++.++|+|||++++..+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999776643 6789999999999999987643
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.63 E-value=1.8e-14 Score=109.25 Aligned_cols=123 Identities=23% Similarity=0.251 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
++...+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+. ..++.+
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~ 96 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVL 96 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEE
Confidence 555666666666665 78899999999999999999988765667999999999999999999876321 257888
Q ss_pred EEcccccccccCCCCCCeeEEEecCC---hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+|..+..+. ..+.||.|+++.. ...+++.+.+.|+|||++++.....
T Consensus 97 ~~~d~~~~l~~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 97 IKGEAPEILFT--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EEechhhhHhh--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 88884332222 2457899999543 5668899999999999998765443
No 20
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=3.6e-15 Score=116.69 Aligned_cols=126 Identities=25% Similarity=0.156 Sum_probs=99.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.||.+|||||||+|.+++.+++..+ .+|+|+++|++..+.+++++...+++ .+++++..|+.+. .+.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~------~e~ 137 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF------EEP 137 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc------ccc
Confidence 79999999999999999999998863 59999999999999999998874432 4899998885432 233
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEEeeec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 192 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (206)
||.|++..++++ +++.+.+.|+|||.+++.+......... ....|.. +.+|+....|.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~-~yiFPgG~lPs 203 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFID-KYIFPGGELPS 203 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHH-HhCCCCCcCCC
Confidence 699999988865 6789999999999999988876632222 3345666 66777766663
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=114.29 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++...+. ..+++++.+|..+..++ ++++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~--~~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQH--LETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhh--cCCCC
Confidence 556899999999999999998753 4999999999999999998876321 25789999985443334 57789
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|++...+++ +++++.++|+|||++++..++..
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999887654 56899999999999998766643
No 22
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.61 E-value=4.7e-15 Score=114.90 Aligned_cols=133 Identities=25% Similarity=0.248 Sum_probs=101.8
Q ss_pred ccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
.......++..|.....++..+. +.||.+|||.|+|+|.++..+++..+|.++|+.+|+.++..+.|++++...+.
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-- 90 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-- 90 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--
Confidence 34556778889999999999998 99999999999999999999999999999999999999999999999998543
Q ss_pred cCCCceEEEEcccccccccC-CCCCCeeEEEecCChHH-HHHHHHhcc-cCCcEEEEEecCCC
Q psy10573 103 LDQGRVQFVAYFWLRHLLLT-NPHGSTRVIQSCWTKEE-YNSWLLDQL-VPGGRMVMPVGEPF 162 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~~~~~-~~~~~~D~i~~~~~~~~-~~~~~~~~L-~~gG~l~~~~~~~~ 162 (206)
..++++...|..+ ..|. --++.+|.|+.+.+-++ .+..+.++| ++||++++.+++.+
T Consensus 91 --~~~v~~~~~Dv~~-~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 91 --DDNVTVHHRDVCE-EGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp --CTTEEEEES-GGC-G--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred --CCCceeEecceec-ccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 2589999999432 2220 01367899999988765 778899999 89999999999876
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=2.4e-14 Score=107.12 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
++++.+|||+|||+|..+..++... +.++++++|+++.+++.++++.+..+ ..+++++.+|..+ .. ..++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~-~~---~~~~ 112 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEE-FG---QEEK 112 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhh-CC---CCCC
Confidence 4568999999999999999998765 67799999999999999999988733 3469999998433 21 1557
Q ss_pred eeEEEecCC--hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++.. .+.+++.+.+.|+|||++++......
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 899999654 45788999999999999998876543
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=2.2e-14 Score=106.13 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=88.2
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+.. .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..++. .+++++..|+
T Consensus 19 ~t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~ 90 (170)
T PF05175_consen 19 GTRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESST
T ss_pred HHHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----cccccccccc
Confidence 34456666663 278899999999999999999876 666799999999999999999998443 3489999884
Q ss_pred ccccccCCCCCCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ .. ++++||+|++|+++ ..+++.+.+.|+|||.+++......
T Consensus 91 ~~--~~--~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 91 FE--AL--PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp TT--TC--CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cc--cc--cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 32 22 56888999999875 3466888999999999987665543
No 25
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.59 E-value=7.3e-14 Score=105.69 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=92.3
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
+..++...+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++... +..+
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~-----~~~~ 91 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRF-----GVKN 91 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----CCCC
Confidence 334555666666777775 6788999999999999999998654 5679999999999999999998763 2347
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecC--ChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCW--TKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~--~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++.+|..+.... ....+|.++... .+..+++.+.+.|+|||.+++.....
T Consensus 92 v~~~~~d~~~~~~~--~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 92 VEVIEGSAPECLAQ--LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred eEEEECchHHHHhh--CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 89998884332111 112236665543 34678899999999999999987764
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=2.7e-14 Score=112.35 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=81.9
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.+++. +++++.+|...
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRD 83 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence 33444443 4678999999999999999998876 667999999999999999652 46788888432
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. . ++++||+|+++..+++ +++++.++|+|||.+++..+.
T Consensus 84 -~-~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 84 -W-K--PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -C-C--CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2 2 4578899999888755 567899999999999987654
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.59 E-value=3.6e-14 Score=112.62 Aligned_cols=104 Identities=31% Similarity=0.391 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.++++... .+..+++++.+|. ...++ ++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-----~g~~~v~~~~~d~-~~l~~--~~~~ 146 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-----AGYTNVEFRLGEI-EALPV--ADNS 146 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----cCCCCEEEEEcch-hhCCC--CCCc
Confidence 57889999999999999888887776777899999999999999998776 2335788998883 44455 7789
Q ss_pred eeEEEecCCh------HHHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
||+|+++..+ ..+++++.++|+|||++++...
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999988653 4578999999999999998643
No 28
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=2.4e-14 Score=108.77 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++... ...++.++.+|.....+..+++++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEE-----GLTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHc-----CCCCEEEEecCHHHHHHHHcCcccc
Confidence 367899999999999999998776 6679999999999999999988763 2357999999952333301277889
Q ss_pred eEEEecCC--------------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWT--------------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~--------------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++.+ ...+++++.++|+|||++++.+....
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 99998643 24578999999999999999876654
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=3.4e-14 Score=106.05 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|..+..++... +.++++++|.++.+++.++++.... +..+++++.+|..+ .. ..++||
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~-----~~~~i~~i~~d~~~-~~---~~~~fD 111 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAEL-----GLNNVEIVNGRAED-FQ---HEEQFD 111 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHh-----CCCCeEEEecchhh-cc---ccCCcc
Confidence 47899999999999999987654 6679999999999999999888763 23479999999433 11 356789
Q ss_pred EEEecC--ChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCW--TKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~--~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|+++. ....+++.+.+.|+|||.+++......
T Consensus 112 ~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 112 VITSRALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred EEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 999985 234566888999999999998765443
No 30
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.58 E-value=3.5e-14 Score=114.53 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=82.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|.++..+++. +++|+|+|+++.+++.|+.+..... ...++.++.+| .+..++ ++++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~d-ae~l~~--~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTT-AEKLAD--EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecC-HHHhhh--ccCCCC
Confidence 5679999999999999988763 4599999999999999998765411 12478899988 344445 677899
Q ss_pred EEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|++...+++ +++++.++|+|||.+++.+.+..
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999887765 67899999999999999986643
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=6.6e-14 Score=110.50 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=88.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....+++.+. +.++.+|||+|||+|..+..+++.. .++++++|+++.+++.+++++.. ..++.++.+|.
T Consensus 40 ~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~ 108 (263)
T PTZ00098 40 ATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCc
Confidence 3555556654 7889999999999999998887653 35999999999999999987643 24788999884
Q ss_pred ccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...+ ..+++++.++|+|||.++++.+..
T Consensus 109 -~~~~~--~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 109 -LKKDF--PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred -ccCCC--CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 34456 78899999986543 346789999999999999886643
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.58 E-value=1.2e-13 Score=103.81 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=91.7
Q ss_pred cCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
++.+.+.+.+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ ..++++
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~ 85 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDI 85 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEE
Confidence 455666666777775 6788999999999999999998875 66799999999999999999887632 246888
Q ss_pred EEcccccccccCCCCCCeeEEEecCC---hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 111 VAYFWLRHLLLTNPHGSTRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 111 ~~~d~~~~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.+|.. ..+ .++||+|+++.. +..+++.+.+.|+|||.+++....
T Consensus 86 ~~~d~~--~~~---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 86 IPGEAP--IEL---PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EecCch--hhc---CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 888832 122 356799998764 455778899999999999887543
No 33
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.1e-14 Score=108.18 Aligned_cols=128 Identities=26% Similarity=0.273 Sum_probs=106.5
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
+..+.++..|.....++..+. +.|+.+|+|.|+|+|.++.+++...++.++++++|+.++.++.|++|+......
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 445667777888888888887 999999999999999999999998889999999999999999999999884322
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChHH-HHHHHHhcccCCcEEEEEecCCC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE-YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++++..+|..+. .+ ...||.|+.+.+-++ +++.+.++|+|||.+++.+++.+
T Consensus 146 -d~v~~~~~Dv~~~-~~---~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 146 -DRVTLKLGDVREG-ID---EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred -cceEEEecccccc-cc---ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 3488888884332 11 226799999877654 88999999999999999988866
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=7e-14 Score=109.47 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=86.1
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+...+...+...+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++...+. ..+++++.+|
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d 117 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGD 117 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCC
Confidence 3444444444446788999999999999998887753 3677999999999999999999876321 2478999988
Q ss_pred cccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. ..++ +.+|+|+++..++ .+++++++.|+|||.+++..
T Consensus 118 ~~-~~~~----~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 118 IR-DIAI----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hh-hCCC----CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43 2222 3469999876653 36789999999999999875
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.57 E-value=1.3e-14 Score=110.18 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-++.+|||+|||-|.++..+++.. .+|+|+|+++..+++|+.+..+.+. .+++.+.. .+.... ..++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~-~edl~~--~~~~F 125 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV------NIDYRQAT-VEDLAS--AGGQF 125 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc------cccchhhh-HHHHHh--cCCCc
Confidence 478999999999999999999854 4999999999999999999887332 24455544 222222 34788
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+|..+++| ++..|.+++||||++++++.+.+
T Consensus 126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 99999888876 55789999999999999998865
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.56 E-value=6e-14 Score=110.92 Aligned_cols=102 Identities=31% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+++|.+|||||||+|.++..+++..+ ++|+|+++|++..+.+++.+...++ ..++++...|+.+ + +++
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~~---~---~~~ 127 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYRD---L---PGK 127 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GGG---------S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeeccc---c---CCC
Confidence 68999999999999999999998863 6999999999999999999987443 2578888888532 1 226
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||.|++...+++ +++++.+.|+|||++++.....
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 799999877654 5799999999999998775543
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=7.8e-14 Score=109.88 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=83.5
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+|+.+++.+++++ +++.++.+|...
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~ 87 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS 87 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc
Confidence 34444443 4678899999999999999998876 6679999999999999998764 357788888422
Q ss_pred ccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. . +.++||+|+++..+++ +++++.++|+|||.+++.++.
T Consensus 88 ~--~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 88 W--Q--PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred c--C--CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 1 2 4457899999988754 678999999999999987654
No 38
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=7.6e-14 Score=109.52 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=78.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..+... ..+++++|+|+.+++.++++.. ...++.+| .+..++ ++++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d-~~~~~~--~~~~f 104 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA----------ADHYLAGD-IESLPL--ATATF 104 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcC-cccCcC--CCCcE
Confidence 35679999999999999888763 3599999999999999987642 24577788 344556 78899
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++..++ .++.++.++|+|||.++++++...
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 9999987764 367899999999999999987654
No 39
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=1.1e-13 Score=110.31 Aligned_cols=136 Identities=22% Similarity=0.221 Sum_probs=97.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..|.......+.+..++.|.....+...+...+ .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|++
T Consensus 85 ~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 334444445555556666655444444443222 345799999999999999999876 66799999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHH
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNS 142 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~ 142 (206)
++..++. ..++.++.+|+.+ .+ ++++||+|++|++. ..+++
T Consensus 164 n~~~~~~----~~~i~~~~~D~~~--~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~ 235 (284)
T TIGR03533 164 NIERHGL----EDRVTLIQSDLFA--AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA 235 (284)
T ss_pred HHHHcCC----CCcEEEEECchhh--cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH
Confidence 9987332 1468999999432 23 45678999998652 12457
Q ss_pred HHHhcccCCcEEEEEecC
Q psy10573 143 WLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~~~~ 160 (206)
.+.+.|+|||++++.+..
T Consensus 236 ~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 236 EAADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHHhcCCCCEEEEEECc
Confidence 778899999999988764
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=6.6e-14 Score=97.05 Aligned_cols=101 Identities=26% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D 129 (206)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++..... ..+++++.+|..... .+ ++++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~--~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPL--PDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTC--TTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhc--cCceeE
Confidence 4689999999999999998875 45999999999999999999987432 257999999944333 34 788999
Q ss_pred EEEecCChH--------------HHHHHHHhcccCCcEEEEEec
Q psy10573 130 VIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 130 ~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|++++++. .+++++.+.|+|||.+++.++
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998863 356899999999999998765
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=1.2e-13 Score=104.64 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ ..+++++..|.. ..++ +++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~-~~~~---~~~ 95 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLN-NLTF---DGE 95 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChh-hCCc---CCC
Confidence 446689999999999999999875 3499999999999999998877632 245788888843 2223 356
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~ 157 (206)
||+|++...++ .+++++.++|+|||.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 89999887653 4678999999999996543
No 42
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=1.3e-13 Score=109.55 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=85.7
Q ss_pred HHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
+...+.+.+.+.+ .+..+|||+|||+|.++..+++.... ...++|+|+|+.+++.|+++. +++.+..
T Consensus 70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~ 139 (272)
T PRK11088 70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCV 139 (272)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEE
Confidence 4444444454333 34578999999999999999876532 237899999999999997653 4678888
Q ss_pred cccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+| ....++ ++++||+|++... +...+++.++|+|||++++.+++..
T Consensus 140 ~d-~~~lp~--~~~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 140 AS-SHRLPF--ADQSLDAIIRIYA-PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ee-cccCCC--cCCceeEEEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 88 344566 7889999998665 3456889999999999999887654
No 43
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=9.6e-14 Score=104.87 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.....+||||||+|.++..++... |..+++|+|+++.+++.+++++... +..+++++.+|........++++++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~-----~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKL-----GLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHh-----CCCCEEEEccCHHHHHHhhCCCCce
Confidence 355799999999999999999876 7779999999999999999888763 3358999999943322111256789
Q ss_pred eEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|.|+++.+. +.+++.+.++|+|||.+++.+....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 999987643 2477899999999999999877654
No 44
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.9e-13 Score=106.11 Aligned_cols=114 Identities=28% Similarity=0.337 Sum_probs=87.9
Q ss_pred HHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
....+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++. +++.++.+|
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d 88 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGD 88 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecc
Confidence 3444555554322 345789999999999999998876 66789999999999999987653 267888888
Q ss_pred cccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....++ ++++||+|+++..++ .+++++.++|+|||.+++..+...
T Consensus 89 -~~~~~~--~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 89 -AEKLPL--EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred -hhhCCC--CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 334455 778899999987764 467899999999999999876543
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=2.1e-13 Score=111.95 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=86.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. ...+.+|||+|||+|..+..+++.. |..+++++|.|+.+++.++++++.+..+ ...+++++..|..
T Consensus 217 trllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEcccc
Confidence 334555554 2334699999999999999998876 7789999999999999999998764321 1236788888732
Q ss_pred cccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
. .+ ++++||+|++|++++ .+++.+.+.|+|||.+++...
T Consensus 292 ~--~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 S--GV--EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred c--cC--CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 2 12 456789999998864 356788999999999998853
No 46
>PRK08317 hypothetical protein; Provisional
Probab=99.53 E-value=5.1e-13 Score=103.58 Aligned_cols=112 Identities=31% Similarity=0.434 Sum_probs=88.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. +.++.+|||+|||+|.++..++...++.++++++|+++..++.++++... ...+++++..|. .
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~-~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDA-D 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccc-c
Confidence 34444444 67889999999999999999988776677999999999999999887332 125788888883 3
Q ss_pred ccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..++ ++++||+|++...++ .+++++.++|+|||.+++..+.
T Consensus 80 ~~~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 80 GLPF--PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cCCC--CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3345 678899999976654 4778999999999999987654
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.53 E-value=6.8e-14 Score=104.13 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.+..+|.|+|||+|..+..++++. |...++|+|.|++|++.|+.++ ++.+|..+|...-. +...
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~----p~~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWK----PEQP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcC----CCCc
Confidence 4667899999999999999999998 8889999999999999998765 57889999932211 3334
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|++++|..++. ++..+...|.|||.+.+.++...
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 499999999865 56788999999999999988754
No 48
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=4.4e-13 Score=110.51 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=95.5
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
...|.........+..++.|. .+.+++.+...+.++.+|||+|||+|..+..++... +.++++++|+|+.+++.++++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 444555555555455555554 334444443345567799999999999999988765 667999999999999999999
Q ss_pred hhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHH
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSW 143 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~ 143 (206)
+...+ .+++++.+|+.+.... ..++||+|++|++. ..+++.
T Consensus 295 a~~~g------~rV~fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~ 366 (423)
T PRK14966 295 AADLG------ARVEFAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQG 366 (423)
T ss_pred HHHcC------CcEEEEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHH
Confidence 87632 3689999995332111 23578999998863 123455
Q ss_pred HHhcccCCcEEEEEecCC
Q psy10573 144 LLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.|+|||.+++.....
T Consensus 367 a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 367 APDRLAEGGFLLLEHGFD 384 (423)
T ss_pred HHHhcCCCcEEEEEECcc
Confidence 667899999998876553
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=2.8e-13 Score=115.54 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=88.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
.+.+++.+. +.++.+|||+|||+|..+..+++.. +++++|+|+|+.+++.|+++... ...+++++.+|+
T Consensus 255 te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~- 323 (475)
T PLN02336 255 TKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADC- 323 (475)
T ss_pred HHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCc-
Confidence 444555554 5678899999999999999888765 45999999999999999887643 124689999993
Q ss_pred cccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...++ ++++||+|++...++ .+++++.++|+|||.+++..+..
T Consensus 324 ~~~~~--~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 324 TKKTY--PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCCC--CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 33445 778899999987764 47789999999999999886643
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.52 E-value=4.3e-13 Score=105.08 Aligned_cols=102 Identities=29% Similarity=0.389 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+ ..++.++.+|+.+ .+ ++++|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~--~~--~~~~f 155 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFE--PL--PGGKF 155 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhc--cC--cCCce
Confidence 345699999999999999999876 56799999999999999999987632 3468999998433 23 56789
Q ss_pred eEEEecCChH--------------------------------HHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTKE--------------------------------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~~--------------------------------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|++++++. .+++.+.+.|+|||.+++....
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9999976531 3457788899999999987543
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=3.1e-13 Score=108.75 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=96.4
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCC--CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..|.........+..++.|.....+...+...+. +..+|||+|||+|.++..++... +..+++++|+|+.+++.|++
T Consensus 97 ~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~ 175 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEI 175 (307)
T ss_pred ceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 3344444444445555666554444444432222 23689999999999999998876 66799999999999999999
Q ss_pred hhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHH
Q psy10573 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNS 142 (206)
Q Consensus 94 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~ 142 (206)
++...+. ..+++++.+|+.+ .+ ++++||+|+++++. ..+++
T Consensus 176 n~~~~~l----~~~i~~~~~D~~~--~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~ 247 (307)
T PRK11805 176 NIERHGL----EDRVTLIESDLFA--AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA 247 (307)
T ss_pred HHHHhCC----CCcEEEEECchhh--hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH
Confidence 9987332 1468999999432 22 45678999998642 13457
Q ss_pred HHHhcccCCcEEEEEecCC
Q psy10573 143 WLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~~~~~ 161 (206)
.+.+.|+|||.+++.+...
T Consensus 248 ~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 248 EAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHHhcCCCCEEEEEECcC
Confidence 7888999999999876653
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.51 E-value=5.6e-13 Score=103.88 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++..... ..+++++.+|+. ..++ .
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~-~~~~----~ 121 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIR-HVEI----K 121 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChh-hCCC----C
Confidence 4678899999999999999998765 2577999999999999999998865221 246899999843 2222 2
Q ss_pred CeeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+|++...+++ +++++.++|+|||.+++...
T Consensus 122 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 122 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4688888766543 56899999999999998854
No 53
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=2.7e-13 Score=102.49 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=77.8
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ . ++.+...|.
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~- 86 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDI- 86 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccc-
Confidence 344555554 445679999999999999999874 3499999999999999988776532 1 256666663
Q ss_pred cccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
...++ +++||+|++...++ .+++++.++|+|||.+++..
T Consensus 87 ~~~~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 87 NAAAL---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred hhccc---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 22222 35689998876543 46789999999999866553
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=7.4e-13 Score=105.89 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
.....++.+.....++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++..++.. .++.+...+.
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~~ 218 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeccc
Confidence 344444455444567899999999999999887754 2 348999999999999999998874321 2455555441
Q ss_pred ccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
... .+++||+|+++...+ .++..+.+.|+|||.++++....
T Consensus 219 ---~~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 219 ---EQP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ---ccc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 122 456789999987655 46688899999999999876543
No 55
>KOG1540|consensus
Probab=99.51 E-value=5.5e-13 Score=101.65 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPE-----GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 122 (206)
..++.++||++||||-.+..+.+..+.. .+|++.|+++.++.+++++..+..+ -..+++.|+.+| .+.+||
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~d-AE~LpF- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGD-AEDLPF- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCC-cccCCC-
Confidence 3456899999999999999998877432 7999999999999999999865332 122458999999 777888
Q ss_pred CCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 123 NPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++++||..++.... +..+++++++|||||++.+-.++.
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99999999887665 457799999999999998666554
No 56
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.3e-13 Score=107.40 Aligned_cols=117 Identities=28% Similarity=0.357 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+......++++.++..++.+|||+|||||.+++.+++.. . .+++|+|++|.+++.+++++..|+... .++....
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A-~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG-A-KKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC-C-ceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc
Confidence 345666677777667899999999999999999988754 3 389999999999999999999855421 1111111
Q ss_pred ccccccccCCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+ . ... ...+.||+|++|-.. ..+...+.+.|+|||+++++-.-
T Consensus 220 ~-~--~~~-~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 220 L-L--LEV-PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred c-c--hhh-cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 1 1 111 123577999997643 34668889999999999998644
No 57
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=5.3e-13 Score=102.79 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
+.++.+|||+|||+|.++..+++..+ .+.|+++|+++.+++.+.+++.. ..++.++.+|...... ..+ .+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhc-cc
Confidence 67899999999999999999998874 66999999999999987766543 2478888888432111 111 24
Q ss_pred CeeEEEecCChH----HHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+||+|+++...+ .+++++.+.|||||.++++++
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 589999866532 246899999999999999644
No 58
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.50 E-value=2.6e-13 Score=107.97 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
+...+.+++.+.+...++.+|||+|||||.+++..++.. . .+|+++|+++.+++.|++|+..++.+ .++.+...
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A-~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~~~ 218 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-A-KKVVAIDIDPLAVEAARENAELNGVE----DRIEVSLS 218 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-B-SEEEEEESSCHHHHHHHHHHHHTT-T----TCEEESCT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEEEe
Confidence 456777777777777889999999999999999888753 3 38999999999999999999986543 34444211
Q ss_pred ccccccccCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
... ..+.||+|++|-..+- +...+.+.|+|||.++++-.-..
T Consensus 219 -----~~~--~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 219 -----EDL--VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp -----SCT--CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred -----ccc--ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence 112 4477799999876553 55677889999999999855433
No 59
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.50 E-value=4.7e-13 Score=103.11 Aligned_cols=108 Identities=26% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.....+|||+|||+|..+..++++.. ..++++||+++++.+.|+++...+.. ..+++++++|..+.... ....+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~-~~~~~ 115 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKA-LVFAS 115 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhc-ccccc
Confidence 44578999999999999999998863 37999999999999999999987443 36899999994433221 24457
Q ss_pred eeEEEecCCh------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+||++. +.+++.+.++||+||.+.++.+..
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 8999999884 335678889999999999887653
No 60
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=1.2e-13 Score=93.39 Aligned_cols=90 Identities=32% Similarity=0.441 Sum_probs=68.5
Q ss_pred EEEEcccCchHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 54 ILDIGSGSGYLTACLAYMA--GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
|||+|||+|..+..+.+.+ ++..+++++|+|+.+++.++++....+ .+++++.+|+ ...++ .+++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~-~~l~~--~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADA-RDLPF--SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCT-TCHHH--HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCH-hHCcc--cCCCeeEE
Confidence 7999999999999999876 334699999999999999999987522 3789999994 33445 67789999
Q ss_pred EecCC-h--------HHHHHHHHhcccCCc
Q psy10573 132 QSCWT-K--------EEYNSWLLDQLVPGG 152 (206)
Q Consensus 132 ~~~~~-~--------~~~~~~~~~~L~~gG 152 (206)
++... + ..+++++.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99443 4 347789999999998
No 61
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=6e-13 Score=111.79 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=88.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++.+.+ ..++.++.+|......+ .+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~--~~~~ 307 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTEY--VQDT 307 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhhh--hhcc
Confidence 6788999999999999999999887667799999999999999999998733 34688998884322212 3567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++ ..++..+.+.|+|||+++.++++..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 8999998775 1246788999999999999999865
No 62
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.49 E-value=7e-13 Score=107.47 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++... .+++++.+| ....++ ++++|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD-~e~lp~--~~~sF 179 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGD-AEDLPF--PTDYA 179 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEecc-HHhCCC--CCCce
Confidence 467899999999999999888776 446999999999999999987543 467888888 444556 78889
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+++..++ ..++++.++|+|||.+++...
T Consensus 180 DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999987654 467899999999999987643
No 63
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.49 E-value=9e-13 Score=102.25 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
....++..+.+ ..++.+|||+|||+|+.+..++...++.++++++|+++++++.|++++...+.+ .+++++.+|.
T Consensus 55 ~~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda 129 (234)
T PLN02781 55 DEGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccH
Confidence 34445544442 567889999999999999999887766789999999999999999999885432 5799999994
Q ss_pred ccccc-c--CCCCCCeeEEEecCCh---HHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLL-L--TNPHGSTRVIQSCWTK---EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~-~--~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+..+ + +.+.++||+|+++..- ..+++.+.+.|+|||++++.
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33211 0 0124678999998653 45778889999999998864
No 64
>PTZ00146 fibrillarin; Provisional
Probab=99.48 E-value=6.6e-13 Score=104.77 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+.++.-+... +.++.+|||+|||+|.++..+++..++.+.||++|+++.+.+...+.... ..|+.++..|
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~D 189 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIED 189 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECC
Confidence 344443333322 68899999999999999999999987778999999998766554443322 1478888888
Q ss_pred cccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEE
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~ 157 (206)
......+....+++|+|+++...+. +..++.+.|||||.+++.
T Consensus 190 a~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 190 ARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 4332222223457899999776432 446788999999999985
No 65
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=1.3e-12 Score=108.16 Aligned_cols=99 Identities=26% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++.. +++|+++|+|+++++.+++++.. .++++...|... . +++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~---l---~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRD---L---NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhh---c---CCC
Confidence 5788999999999999999998764 35999999999999999988743 246777777321 1 356
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++...++ .+++++.++|+|||.+++......
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 79999876654 367889999999999999876544
No 66
>PRK04457 spermidine synthase; Provisional
Probab=99.47 E-value=1.8e-12 Score=102.25 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||||||+|.++..+++.. |..+++++|+++.+++.|++++.... ..++++++.+|..+...- ..++
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~--~~~~ 136 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAV--HRHS 136 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHh--CCCC
Confidence 3556899999999999999998876 77899999999999999999876421 136899999994333221 2356
Q ss_pred eeEEEecCC----------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT----------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~----------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+++.. ...+++.+.+.|+|||++++..++..
T Consensus 137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 799998631 14577999999999999999766543
No 67
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=4.5e-13 Score=102.23 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=86.8
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
...|...+...++...... -...+.+.+. .+.++.+|||+|||+|.++..+++..++.+.|+++|+++. .
T Consensus 19 ~d~~~~~~~~~~~~~r~~~--kl~~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~- 88 (209)
T PRK11188 19 SDKYVQQAQKKGLRSRAWF--KLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D- 88 (209)
T ss_pred cCHHHHHHhhcCCchhHHH--hhHHHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c-
Confidence 4555555555554433111 1222222222 2577899999999999999999988766779999999881 0
Q ss_pred hhccCccccCCCceEEEEccccccc-------ccCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccC
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHL-------LLTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVP 150 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~ 150 (206)
..+++.++++|+.... ++ ..++||+|+++... ..+++.+.++|+|
T Consensus 89 ---------~~~~v~~i~~D~~~~~~~~~i~~~~--~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp 157 (209)
T PRK11188 89 ---------PIVGVDFLQGDFRDELVLKALLERV--GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP 157 (209)
T ss_pred ---------CCCCcEEEecCCCChHHHHHHHHHh--CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1246889999943321 24 67789999997632 2366889999999
Q ss_pred CcEEEEEecCCC
Q psy10573 151 GGRMVMPVGEPF 162 (206)
Q Consensus 151 gG~l~~~~~~~~ 162 (206)
||.+++.++...
T Consensus 158 GG~~vi~~~~~~ 169 (209)
T PRK11188 158 GGSFVVKVFQGE 169 (209)
T ss_pred CCEEEEEEecCc
Confidence 999999877655
No 68
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.47 E-value=4.4e-13 Score=98.94 Aligned_cols=100 Identities=25% Similarity=0.251 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~ 125 (206)
.++|+.+|||+|||.|.+...+.+. .++..+|+|++++.+..|.++ .+.++++|...... | ++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f--~d 73 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADF--PD 73 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhC--CC
Confidence 3789999999999999999998875 556999999999998888753 57799999555544 6 99
Q ss_pred CCeeEEEecCChHHHH---HHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTKEEYN---SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~---~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++||.|+.+..++++. .-+.++|+-|...+++.++-.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9999999998887532 233455667888888877643
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=2e-12 Score=105.38 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.+...++.... +.++..|||+|||+|.++..++.. ..+++|+|+++.++..+++++...+ ..+++++
T Consensus 166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVK 235 (329)
T ss_pred CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEE
Confidence 45666777776664 788999999999999998887653 3499999999999999999987633 2347888
Q ss_pred EcccccccccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|.. ..++ ++++||+|++++++ ..+++.+.+.|+|||++++..++..
T Consensus 236 ~~D~~-~l~~--~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 236 RGDAT-KLPL--SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred ecchh-cCCc--ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 88843 3444 56789999998652 3467888999999999999887654
No 70
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.46 E-value=1.6e-12 Score=103.77 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=80.3
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
.+|||+|||+|.++..++... +..+++++|+|+.+++.+++++...+. ..+++++.+|+.+ ++ +.++||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~--~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFE--PL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhc--cC--cCCCccEE
Confidence 699999999999999998876 667999999999999999999876332 1358999999543 22 34478999
Q ss_pred EecCCh-------------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 132 QSCWTK-------------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 132 ~~~~~~-------------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++++. ..+++.+.+.|+|||.+++.+....
T Consensus 187 vsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 187 VSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ 248 (284)
T ss_pred EECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 998542 1245777889999999999887643
No 71
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=1.9e-12 Score=106.09 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=88.0
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~ 127 (206)
..+..+||||||+|.++..++... |...++|+|+++.++..+.+++... +..|+.++.+|+... ..+ ++++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~-----gL~NV~~i~~DA~~ll~~~--~~~s 192 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELL-----NLKNLLIINYDARLLLELL--PSNS 192 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEECCHHHhhhhC--CCCc
Confidence 456799999999999999999887 7789999999999999999988773 346899999994332 234 8899
Q ss_pred eeEEEecCChH------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|.|+++.+.+ .+++.+.++|+|||.+.+.+-...
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99999987653 578999999999999999877644
No 72
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.45 E-value=1.8e-12 Score=102.47 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..++...++.+.|+++|+++.+++.+++++... +..++.++..|... ... ..+.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-----g~~~v~~~~~D~~~-~~~--~~~~ 140 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-----GVLNVAVTNFDGRV-FGA--AVPK 140 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-----CCCcEEEecCCHHH-hhh--hccC
Confidence 678899999999999999999888766679999999999999999999873 33578888888322 121 2345
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++ ..+++.+.+.|+|||+++.++.+..
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999987653 1266788899999999999988765
No 73
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.5e-12 Score=102.42 Aligned_cols=112 Identities=23% Similarity=0.244 Sum_probs=85.7
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.+++.+. ...+.+|||+|||.|.++..+++.. |..+++.+|++..+++.+++++..++. .+..++..|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~- 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLY- 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEeccc-
Confidence 34445554 3445599999999999999999887 678999999999999999999998443 34345555521
Q ss_pred ccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+. .+ +||.|++|+++| .+++...+.|++||.+.+......
T Consensus 219 -~~v--~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 219 -EPV--EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred -ccc--cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 111 23 779999999985 366788999999999999887543
No 74
>PRK06922 hypothetical protein; Provisional
Probab=99.45 E-value=2e-12 Score=111.32 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc--cCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL--LTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~ 125 (206)
..++.+|||+|||+|..+..+++.. ++++++|+|+|+.+++.++++....+ .++.++.+|..+ .+ + ++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d-Lp~~f--ed 485 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN-LSSSF--EK 485 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh-Ccccc--CC
Confidence 3467899999999999998888776 77899999999999999998765411 357888888432 33 4 78
Q ss_pred CCeeEEEecCChH-------------------HHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKE-------------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~-------------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++||+|+++..++ .+++++.++|||||++++...
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999999876554 345788999999999999754
No 75
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=1.3e-12 Score=100.83 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=79.5
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
++|||+|||+|..+..+++.. +.++++++|+|+.+++.+++++...+. ..+++++..|... .++ .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~-~~~---~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAK-DPF---PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEeccccc-CCC---CCCCCEe
Confidence 379999999999999998876 567999999999999999998876332 2478898888432 233 3578999
Q ss_pred EecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 132 QSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 132 ~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++...++ .+++++.++|+|||.+++....
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9876554 4778999999999999987653
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=2.7e-12 Score=95.77 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..++ .+++++.+|+.+ . ..++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~---~--~~~~ 82 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFK---G--VRGK 82 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccc---c--cCCc
Confidence 3456789999999999999998754 3 89999999999999999987632 257888888432 1 2457
Q ss_pred eeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++++++ +.+++++.++|+|||.+++......
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 8999998664 2357888999999999998876654
No 77
>PLN02476 O-methyltransferase
Probab=99.44 E-value=2.6e-12 Score=101.19 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=89.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...++..+.. ..++++|||+|+++|+.+..++...++.++++++|.+++..+.|+++++..+.+ .+++++.+|..
T Consensus 106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~ 180 (278)
T PLN02476 106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHH
Confidence 3343444332 567899999999999999999988766789999999999999999999985532 58999999944
Q ss_pred cccc-c--CCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 117 RHLL-L--TNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 117 ~~~~-~--~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
+..+ + .-..++||+|+++..-.. +++.+.+.|+|||++++-
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 3322 1 001357899999988654 567889999999998875
No 78
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=2.3e-12 Score=108.98 Aligned_cols=107 Identities=16% Similarity=0.023 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+ ..++.++.+|..+.. .+ + +
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~--~-~ 319 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEKF--A-E 319 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccchh--c-c
Confidence 6788999999999999999999877566799999999999999999998733 346899999943322 12 2 6
Q ss_pred CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|++++++ ..+++.+.+.|+|||.++.++.+..
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 78999998763 1356888999999999998877653
No 79
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=2.5e-12 Score=108.43 Aligned_cols=110 Identities=21% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 126 (206)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++... +..++.++.+|...... .....+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-----g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-----GLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCeEEEEeCChhhcccccccccc
Confidence 678899999999999999999988766679999999999999999999873 34578999988432211 001356
Q ss_pred CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||.|++++++ ..+++.+.+.|+|||+++.++++..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 88999998653 2356888999999999998887754
No 80
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=3.8e-12 Score=96.67 Aligned_cols=118 Identities=27% Similarity=0.307 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA- 112 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~- 112 (206)
|.....+.-++. ..++++|||||++.|+.+..++.....+++++++|++++..+.|++++++.+.+ .++.++.
T Consensus 45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~ 118 (219)
T COG4122 45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLG 118 (219)
T ss_pred hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEec
Confidence 444444444444 678899999999999999999998855889999999999999999999985543 4588888
Q ss_pred cccccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEe
Q psy10573 113 YFWLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 113 ~d~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|+.+...- ...++||+|+++..-. .+++.+.++|+|||.+++--
T Consensus 119 gdal~~l~~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 119 GDALDVLSR-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred CcHHHHHHh-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 574332220 2578899999998864 47788999999999998763
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=2.4e-12 Score=102.95 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ . ++++...|... .. .+++||
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~-~~---~~~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINS-AS---IQEEYD 186 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhc-cc---ccCCcc
Confidence 3459999999999999999874 3599999999999999998887632 2 57777777322 22 256789
Q ss_pred EEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 130 VIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 130 ~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|++...++ .+++++.++|+|||++++..
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887653 36789999999999977654
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=4e-12 Score=98.10 Aligned_cols=102 Identities=25% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++...+ .++.++.+|+.. .+ ++++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~--~~--~~~~ 101 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWAR--AV--EFRP 101 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhh--hc--cCCC
Confidence 567889999999999999988864 2 2489999999999999999887522 247788888432 23 5678
Q ss_pred eeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
||+|+++++. +.+++++.+.|++||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8999998542 235677889999999999865554
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.43 E-value=3.4e-12 Score=104.09 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=83.1
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
+.+++.+. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++. ..+++..|...
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS 256 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence 44555554 2334689999999999999998875 667999999999999999999887432 24566666321
Q ss_pred ccccCCCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ..+.||+|+++++++ .+++.+.+.|+|||.+++....
T Consensus 257 ---~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 257 ---D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ---c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 1 246789999998874 3567889999999999887654
No 84
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=2.2e-12 Score=94.05 Aligned_cols=100 Identities=31% Similarity=0.405 Sum_probs=74.2
Q ss_pred HHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc
Q psy10573 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 42 ~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 121 (206)
+.+.....++.+|||+|||+|.++..+.+.. . +++++|+++.+++. . ++.....+ ......
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~~~~~~-~~~~~~ 74 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVVFDNFD-AQDPPF 74 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSEEEEEE-CHTHHC
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhhhhhhh-hhhhhc
Confidence 3333335778999999999999999996643 3 99999999999888 1 12222222 112223
Q ss_pred CCCCCCeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++++||+|++...+++ +++.+.++|+|||.+++..+...
T Consensus 75 --~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 --PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp --HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred --cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 5778899999988765 67899999999999999988753
No 85
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=2.2e-12 Score=109.02 Aligned_cols=146 Identities=19% Similarity=0.142 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.|++++..++ ..+++++
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~ 350 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFY 350 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 33344444433322 4577899999999999999998765 399999999999999999987633 3579999
Q ss_pred Eccccccc---ccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEe
Q psy10573 112 AYFWLRHL---LLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 185 (206)
Q Consensus 112 ~~d~~~~~---~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (206)
.+|+.+.. ++ .+++||+|+++++.. ..++.+.+ ++|++++++++...+ ..+.+......+|.. ..+.
T Consensus 351 ~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t---laRDl~~L~~~gY~l-~~i~ 423 (443)
T PRK13168 351 HANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT---LARDAGVLVEAGYRL-KRAG 423 (443)
T ss_pred EeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH---hhccHHHHhhCCcEE-EEEE
Confidence 99954321 23 456789999998853 44444444 589999998886654 233333333455888 8888
Q ss_pred eEEeeeccc
Q psy10573 186 GVRTNPLYR 194 (206)
Q Consensus 186 ~~~~~~~~~ 194 (206)
...+.|.+.
T Consensus 424 ~~DmFP~T~ 432 (443)
T PRK13168 424 MLDMFPHTG 432 (443)
T ss_pred EeccCCCCC
Confidence 887777664
No 86
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=4.1e-14 Score=95.28 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=59.0
Q ss_pred EEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEec
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC 134 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~ 134 (206)
||+|||+|.++..+.... +..+++++|+|+.+++.+++++.... ..+...+..+..+.... ...++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDY-DPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C-CC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhc-ccccccceehhh
Confidence 799999999999999887 67799999999999998888887622 22334444331221111 123588999998
Q ss_pred CChHH------HHHHHHhcccCCcEE
Q psy10573 135 WTKEE------YNSWLLDQLVPGGRM 154 (206)
Q Consensus 135 ~~~~~------~~~~~~~~L~~gG~l 154 (206)
..+++ +++++.+.|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88765 568999999999986
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=3.7e-12 Score=99.90 Aligned_cols=110 Identities=26% Similarity=0.299 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.....+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..++.. .++.+..++
T Consensus 104 ~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~ 177 (250)
T PRK00517 104 PTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGD 177 (250)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCC
Confidence 3455556666555678899999999999998877654 33 36999999999999999998763321 223332222
Q ss_pred cccccccCCCCCCeeEEEecCChH---HHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+||+|+++...+ .+++++.+.|+|||+++++....
T Consensus 178 -----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 178 -----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred -----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 1459999876544 46688999999999999985543
No 88
>KOG1271|consensus
Probab=99.43 E-value=1.7e-12 Score=94.27 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccC-----CCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 36 IHAQMLELLKDKI-----KPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 36 ~~~~~~~~l~~~~-----~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
...+++++|.+.+ ...+ +|||+|||+|.+...|++... .+..+|+|.|+.+++.|++.++..+.+ ..|+
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~ 121 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFS----NEIR 121 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCC----ccee
Confidence 4556666665443 3333 999999999999999987653 347999999999999999988874321 2399
Q ss_pred EEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
|.+.|.... .+ ..+.||+|.--..+ .-++..+.+.|+|||+++++.++.+.
T Consensus 122 f~q~DI~~~-~~--~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 122 FQQLDITDP-DF--LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred EEEeeccCC-cc--cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 999994332 23 44555666443322 12668889999999999999998773
No 89
>PRK05785 hypothetical protein; Provisional
Probab=99.43 E-value=3.7e-12 Score=98.38 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+.....++.+|||+|||+|..+..+++.. ..+++|+|+|+++++.++++. .++.+| ...
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d-~~~ 103 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGS-FEA 103 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEec-hhh
Confidence 3444444334567899999999999999998764 349999999999999997531 245667 444
Q ss_pred cccCCCCCCeeEEEecCChHH------HHHHHHhcccCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPG 151 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~g 151 (206)
.++ ++++||+|++...+++ .++++.++|+|.
T Consensus 104 lp~--~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 104 LPF--RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCC--CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 667 8999999999887753 678999999994
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=7.6e-12 Score=97.12 Aligned_cols=115 Identities=23% Similarity=0.366 Sum_probs=87.1
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+...+. ..++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+ ...++.++.+|..
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~ 113 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAE 113 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEecccc
Confidence 344455554 4577899999999999999998877435799999999999999999876421 1246888888843
Q ss_pred cccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..++ +.++||+|++...+ ..+++.+.+.|+|||.+++....
T Consensus 114 -~~~~--~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 114 -ALPF--PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred -cCCC--CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 2334 56789999886554 34778999999999999876543
No 91
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=4.4e-12 Score=96.41 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. .+.++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|++++. ++.++.+|..
T Consensus 31 ~~~~~~~l~-~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~ 98 (204)
T TIGR03587 31 LAMFARALN-RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLF 98 (204)
T ss_pred HHHHHHHHH-hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeecc
Confidence 333444443 35678899999999999999998765 55699999999999999987642 4667777743
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~ 159 (206)
+ ++ ++++||+|+++..+++ .++++.+++ ++.+++...
T Consensus 99 ~--~~--~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 99 D--PF--KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred C--CC--CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3 56 7889999999888754 335555554 445555543
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=5.7e-12 Score=100.13 Aligned_cols=103 Identities=28% Similarity=0.386 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. ....++.++.+|+.. ++ ++++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-----~~~~~i~~~~~d~~~--~~--~~~~ 175 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-----GLGARVEFLQGDWFE--PL--PGGR 175 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-----CCCCcEEEEEccccC--cC--CCCc
Confidence 4567899999999999999999876 667999999999999999999872 123578999988422 22 3567
Q ss_pred eeEEEecCCh--------------------------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTK--------------------------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~--------------------------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+++++. ..+++.+.+.|+|||.+++....
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 8999997653 12445667999999999987643
No 93
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.42 E-value=5.7e-12 Score=98.79 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=89.6
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccC---CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI---KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
...|....+..+.+..+..+. ...+++.+...+ .+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~-Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRR-TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCcc-HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 344444444444444443332 233333322212 234589999999999999998765 556899999999999999
Q ss_pred HHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------------------------------H
Q psy10573 92 IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------------------------------E 139 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------------------------------~ 139 (206)
++++..+ +.+++.+|+.+..+-. ..++||+|++|+++. .
T Consensus 127 ~~N~~~~--------~~~~~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 127 RRNLADA--------GGTVHEGDLYDALPTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred HHHHHHc--------CCEEEEeechhhcchh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 9998762 2467888843322100 135689999998641 2
Q ss_pred HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++.+.+.|+|||++++.....
T Consensus 198 i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred HHHHHHHhcCCCCEEEEEECcc
Confidence 4456678999999999887644
No 94
>PRK00811 spermidine synthase; Provisional
Probab=99.42 E-value=3.8e-12 Score=101.48 Aligned_cols=110 Identities=22% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+||++|||+|..+..+++.. ...+|+++|+++.+++.+++.+...+......++++++.+|....... .+++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence 456899999999999999998753 345899999999999999998865221111357899999994433332 46678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++... ..+++.+.+.|+|||++++...+.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 999997531 335688999999999999875543
No 95
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.41 E-value=3.1e-12 Score=97.00 Aligned_cols=119 Identities=25% Similarity=0.307 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
......++..+.. .....+||||||++|+.+..+++.++++++++++|++++..+.|++++...+.. .+++++.+
T Consensus 30 ~~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~g 104 (205)
T PF01596_consen 30 SPETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES
T ss_pred CHHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEe
Confidence 3344455555543 456789999999999999999998866789999999999999999999874432 58999999
Q ss_pred ccccccc-c--CCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 114 FWLRHLL-L--TNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 114 d~~~~~~-~--~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
|..+..+ + .-+.+.||+|+++..-.. +++.+.+.|++||.+++-
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 9433222 1 012467899999988654 557788999999999876
No 96
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=8.1e-12 Score=93.26 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+. .-++.++||+|||.|+.+.+|++.. ..|+++|.|+..++.+++.....+ -.++....|.
T Consensus 19 hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl- 86 (192)
T PF03848_consen 19 HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADL- 86 (192)
T ss_dssp -HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BG-
T ss_pred cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecc-
Confidence 344555554 4457799999999999999999854 499999999999999888776533 2478888883
Q ss_pred cccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+...+ ++.||+|++...+ +.+++.+...++|||++++.+.
T Consensus 87 ~~~~~---~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 87 NDFDF---PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CCBS----TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccc---cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 32333 3678999875443 3467888999999999888654
No 97
>KOG1270|consensus
Probab=99.41 E-value=1.2e-12 Score=100.39 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=76.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC-CCceEEEEcccccccccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-QGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
|.+|||+|||.|-++..|++.. .+|+|||+++.+++.|+++.......... .-++.+...+... -.+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~------~~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG------LTGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh------cccccc
Confidence 4789999999999999999865 39999999999999999994432211000 0124454444221 123369
Q ss_pred EEEecCChHHH------HHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKEEY------NSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~~~------~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|+|...++|+ ++.+.+.|+|+|++++++.+..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999888774 5778899999999999988765
No 98
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=6.5e-12 Score=101.83 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=74.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+|||+|||+|.++..++... +. .|+|+|+|+.++..++....... ...++.++.+|. ...++ +++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~-~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~-e~lp~---~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AK-LVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGI-EQLPA---LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CC-EEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCH-HHCCC---cCCc
Confidence 457899999999999999998764 33 69999999988765433221100 124788988883 33332 5678
Q ss_pred eEEEecCChHH------HHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|++...+++ +++++.+.|+|||.+++.+.
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999877643 67899999999999998754
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=7.1e-12 Score=107.25 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=96.1
Q ss_pred cCccccccccccCccccCcHHHHHHH---HHHhhcc----------------------CCCCCeEEEEcccCchHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQM---LELLKDK----------------------IKPGARILDIGSGSGYLTACLA 69 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~----------------------~~~~~~vLDlG~G~G~~~~~l~ 69 (206)
...|.........+-.|++|+.-..+ ++.+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 55566666666666777777643333 2222100 1134689999999999999998
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh------------
Q psy10573 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK------------ 137 (206)
Q Consensus 70 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~------------ 137 (206)
... +..+++++|+|+.+++.|++++...+. ..++.++.+|+.+ .+ +.++||+|++|++.
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~--~~--~~~~fDlIvsNPPYi~~~~~~~l~~~ 228 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFE--NI--EKQKFDFIVSNPPYISHSEKSEMAIE 228 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhh--hC--cCCCccEEEECCCCCCchhhhhcCch
Confidence 776 667999999999999999999876332 2468899988432 12 45678999998652
Q ss_pred --------------------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 138 --------------------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 138 --------------------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+++.+.+.|+|||.+++.+..
T Consensus 229 v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 229 TINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred hhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 11346677899999999987543
No 100
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=7.8e-12 Score=100.59 Aligned_cols=103 Identities=18% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..++... +. .++|+|+|+.++..++..-... ....++.+...+. ...+. .++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-~~-~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~i-e~lp~---~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-AK-SLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGI-EQLHE---LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-CC-EEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCH-HHCCC---CCC
Confidence 3567899999999999998887653 32 7999999999887643221110 0124677777773 22222 247
Q ss_pred eeEEEecCChHH------HHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...+++ .++++.++|+|||.+++.+..
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 899999887754 678999999999999987643
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=4.6e-12 Score=93.84 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
-.++||+|||.|.++..|+.... +++++|+++.+++.|++++.. .++++|+..|.+.. . |+++||+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~--~--P~~~FDL 109 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEF--W--PEGRFDL 109 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT-------SS-EEE
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCC--C--CCCCeeE
Confidence 37899999999999999998774 999999999999999999875 46899999995432 3 7889999
Q ss_pred EEecCCh---------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 131 IQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 131 i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|++...+ ..++..+...|+|||.+++....
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9987654 33667888999999999997664
No 102
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=9.1e-12 Score=104.81 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+ . +++++.+|....... .+.++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~~~~~-~~~~~ 313 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARDPAQW-WDGQP 313 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCcccchhh-cccCC
Confidence 6788999999999999999999876 44699999999999999999998733 2 367888884322111 14567
Q ss_pred eeEEEecCChH----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|++++++. .+++.+.+.|+|||+++.++++..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 89999877631 366788999999999998887543
No 103
>KOG1541|consensus
Probab=99.38 E-value=2.6e-12 Score=95.97 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=99.0
Q ss_pred cccccccccccCccccccccccCccccCcHHHHHHHHHHhhccCCC--CCeEEEEcccCchHHHHHHHHhCCCceEEEEe
Q psy10573 5 DRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82 (206)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD 82 (206)
|.+-|+.+.....|..++.... .+..+.+..++.+. +++ ..-|||||||+|-.+..+.... -..+|+|
T Consensus 10 PpelfYnd~eA~kYt~nsri~~-----IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvD 79 (270)
T KOG1541|consen 10 PPELFYNDTEAPKYTQNSRIVL-----IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVD 79 (270)
T ss_pred Ccceeechhhhhhccccceeee-----ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeec
Confidence 3444444444555555554432 34556677777776 555 5679999999999988886532 2778999
Q ss_pred CCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH-----------------HHHHHHH
Q psy10573 83 HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----------------EYNSWLL 145 (206)
Q Consensus 83 ~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----------------~~~~~~~ 145 (206)
+|+.|++.|.+..- .-+++.+|..+..+| ++|+||-+|+..++. .++..++
T Consensus 80 iSpsML~~a~~~e~----------egdlil~DMG~Glpf--rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy 147 (270)
T KOG1541|consen 80 ISPSMLEQAVEREL----------EGDLILCDMGEGLPF--RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLY 147 (270)
T ss_pred CCHHHHHHHHHhhh----------hcCeeeeecCCCCCC--CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhh
Confidence 99999999987321 236788887778888 999999988765532 1456789
Q ss_pred hcccCCcEEEEEecCCCCCe
Q psy10573 146 DQLVPGGRMVMPVGEPFKGQ 165 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~~~~~ 165 (206)
.+|+.|++.++..+..+..+
T Consensus 148 ~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 148 SCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred hhhccCceeEEEecccchHH
Confidence 99999999999988766433
No 104
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=1.5e-11 Score=92.19 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=83.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. ..++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...... ..++.++..|..+
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~ 84 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRSDLFE 84 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEeccccc
Confidence 33444444 367789999999999999999876 359999999999999999988763321 1127888888433
Q ss_pred ccccCCCCCCeeEEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+ ++++||+|++++++ ..+++++.++|+|||.+++...+.
T Consensus 85 --~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 85 --PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred --cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 23 44578999987653 235688899999999998876654
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=1.1e-11 Score=104.94 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++...+ ..+++++.+|.... . ++++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~--~--~~~~ 318 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSF--S--PEEQ 318 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCccccc--c--cCCC
Confidence 5788999999999999999998877556799999999999999999998733 34788998884321 1 3567
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++++++ ..++..+.+.|+|||+++.++++..
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 8999987553 1267888999999999999998865
No 106
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.38 E-value=1.7e-11 Score=94.21 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+.+.+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.. ..+++++.+|..
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~- 98 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAE- 98 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchh-
Confidence 33444443 45789999999999999999988774336899999999999999887641 246888888843
Q ss_pred ccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..++ +.++||+|++...+ ..+++.+.+.|+|||++++.....
T Consensus 99 ~~~~--~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 99 ALPF--EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred cCCC--CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3344 66789999886544 447789999999999999876543
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=1.3e-11 Score=99.92 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+.+ .++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++..++ ..+++++
T Consensus 155 ~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~ 226 (315)
T PRK03522 155 PAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQ 226 (315)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 444455544433222 356899999999999999998743 499999999999999999998733 3579999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHHH---HHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEeeEE
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEEY---NSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVR 188 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~~---~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (206)
.+|..+.... ..+.||+|+++++...+ .......++|++++++++...+-...+..+ .+|.. ..+....
T Consensus 227 ~~D~~~~~~~--~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~-~~~~~~D 298 (315)
T PRK03522 227 ALDSTQFATA--QGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRI-ERVQLFD 298 (315)
T ss_pred EcCHHHHHHh--cCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEE-EEEEEec
Confidence 9994332221 23468999999875432 223344467888888887776543333333 35777 7777777
Q ss_pred eeeccc
Q psy10573 189 TNPLYR 194 (206)
Q Consensus 189 ~~~~~~ 194 (206)
+.|.+.
T Consensus 299 mFP~T~ 304 (315)
T PRK03522 299 MFPHTA 304 (315)
T ss_pred cCCCCC
Confidence 777654
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.7e-11 Score=97.34 Aligned_cols=135 Identities=23% Similarity=0.257 Sum_probs=93.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCCCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
..|.........+..+++|.....+-..+. ...... +|||+|||||..+..++... +...|+++|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 344444444555556666654444333221 122222 79999999999999999877 677999999999999999999
Q ss_pred hhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh-------------------------------HHHHHH
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK-------------------------------EEYNSW 143 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~-------------------------------~~~~~~ 143 (206)
+..++. .++.++..|+.+. . .++||+|++|++. ..++..
T Consensus 154 a~~~~l-----~~~~~~~~dlf~~--~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~ 223 (280)
T COG2890 154 AERNGL-----VRVLVVQSDLFEP--L---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE 223 (280)
T ss_pred HHHcCC-----ccEEEEeeecccc--c---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh
Confidence 998442 4566666674321 1 2367999999873 124467
Q ss_pred HHhcccCCcEEEEEecCCC
Q psy10573 144 LLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 144 ~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.|+|||.+++......
T Consensus 224 a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 224 APDILKPGGVLILEIGLTQ 242 (280)
T ss_pred hHHHcCCCcEEEEEECCCc
Confidence 7889999999988877544
No 109
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=7.1e-11 Score=89.23 Aligned_cols=120 Identities=20% Similarity=0.115 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..-.+.+.+.+.+.. ..++.+|||+|||+|.++..++... . .+++++|.++.+++.+++++...+ ..++.++
T Consensus 36 ~~d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~ 107 (199)
T PRK10909 36 TTDRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLK-----AGNARVV 107 (199)
T ss_pred CCHHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 334455556666542 2457899999999999998755443 2 499999999999999999988733 3478999
Q ss_pred EcccccccccCCCCCCeeEEEecCChH-----HHHHHHHh--cccCCcEEEEEecCC
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLD--QLVPGGRMVMPVGEP 161 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~--~L~~gG~l~~~~~~~ 161 (206)
.+|+.+.... ..+.||+|++++++. .+++.+.. .|+|++++++.....
T Consensus 108 ~~D~~~~l~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 108 NTNALSFLAQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EchHHHHHhh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 9995432221 234689999999942 23344433 368899999887664
No 110
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=1.5e-11 Score=104.91 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=82.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++... ..++++++.+|...
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEecccc
Confidence 34444443 3466799999999999999998864 389999999999988765321 12578899988432
Q ss_pred -ccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 118 -HLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 118 -~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..++ ++++||+|+++..++ .+++++.+.|+|||++++.-.
T Consensus 95 ~~~~~--~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 95 PDLNI--SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred cccCC--CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2345 788999999988765 366889999999999988643
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.35 E-value=1.3e-11 Score=99.38 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.....+.+...+.++.+|||+|||+|..+..+++.+....+++++|+|+++++.+++++.... ...++.++.+|
T Consensus 48 ~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD 123 (301)
T TIGR03438 48 AILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICAD 123 (301)
T ss_pred HHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEc
Confidence 34444444444446677899999999999999999876324589999999999999999876521 11246778888
Q ss_pred cccccccCCCCC----CeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 115 WLRHLLLTNPHG----STRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 115 ~~~~~~~~~~~~----~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+..++ +.. ...+++++..+ ..+++++.+.|+|||.+++.+.
T Consensus 124 ~~~~~~~--~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 124 FTQPLAL--PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccchhhh--hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4432222 221 22344433332 2367899999999999987654
No 112
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.35 E-value=1.1e-11 Score=97.77 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCCeEEEEcccCch----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhcc----Cc----------------
Q psy10573 49 KPGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDKG----NS---------------- 100 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~----~~~~l~~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~----~~---------------- 100 (206)
.++.+|+|+|||+|. ++..+++... ...+|+|+|+|+.+++.|++..-.. ..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4555555442 2468999999999999999864210 00
Q ss_pred --cccCCCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEe
Q psy10573 101 --ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 101 --~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~ 158 (206)
......+++|...|..+ .++ +.++||+|+|...+. .+++++.+.|+|||.+++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~-~~~--~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLA-ESP--PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCC-CCC--ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00001367888888432 333 577899999977653 36788999999999998753
No 113
>PRK01581 speE spermidine synthase; Validated
Probab=99.34 E-value=2.1e-11 Score=98.84 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.....+||++|||.|..++.+++.. +..+|+++|+++++++.|++.. ...+......++++++.+|......- .+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PS 224 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cC
Confidence 3556799999999999998888754 4569999999999999999732 21111112357899999994443333 45
Q ss_pred CCeeEEEecCCh-----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 126 GSTRVIQSCWTK-----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 126 ~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++||+|+++..- ..+++.+.+.|+|||++++...++
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 678999998542 226688999999999998875544
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.33 E-value=1.8e-11 Score=92.04 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-------c
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-------L 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~ 120 (206)
+.++.+|||+|||+|.++..+++...+.++++++|+++.+ . ..++.++.+|..+.. .
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 6789999999999999999998876556689999999854 1 135777877733211 1
Q ss_pred cCCCCCCeeEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 121 LTNPHGSTRVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+ +.++||+|+++... ..+++.+.+.|+|||++++..+..
T Consensus 94 ~--~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 94 V--GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred h--CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 3 56678999986421 346788899999999999976554
No 115
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.33 E-value=3.8e-11 Score=96.90 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+. ..+++++.+|..+ .++ +.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~-~~~--~~-- 215 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYK-ESY--PE-- 215 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccC-CCC--CC--
Confidence 5677899999999999999999887 7779999997 7899999988876432 2579999999432 223 33
Q ss_pred eeEEEecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|++...++ .+++++.+.|+|||++++.-.
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 49887665443 367899999999999998854
No 116
>KOG4300|consensus
Probab=99.33 E-value=1.1e-11 Score=91.79 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=77.6
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE-EEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..|||+|||+|..-.+.- .. |.++|+.+|.++.+-+.+.+.+.++. ..++. |+.++ .+..+ .++++++|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~-p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~-ge~l~-~l~d~s~Dt 148 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WK-PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVAD-GENLP-QLADGSYDT 148 (252)
T ss_pred cceEEecccCCCCccccc-CC-CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeec-hhcCc-ccccCCeee
Confidence 568999999998865543 22 67899999999999999999998843 35666 88888 34333 238999999
Q ss_pred EEecCCh------HHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWTK------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|++...+ ...++++.++|+|||++++.--
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9886553 4578999999999999988643
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.33 E-value=2.6e-11 Score=102.07 Aligned_cols=116 Identities=13% Similarity=-0.004 Sum_probs=85.5
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+...+. ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++...+.. ..+.+..+|....
T Consensus 229 ~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~ 301 (426)
T TIGR00563 229 WVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGP 301 (426)
T ss_pred HHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeccccccc
Confidence 3444454 67889999999999999999998774 679999999999999999999874321 1334455552211
Q ss_pred cccCCCCCCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..+ .+.++||.|++++++ ..+++.+.+.|+|||.++.++++..
T Consensus 302 ~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 302 SQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 145678999987542 2366788999999999999988764
No 118
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=3.7e-11 Score=93.52 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.....+...+. ..+..+|||||+++|+.+..++...+++++++++|.+++..+.|++++...+. ..+|+++.+
T Consensus 65 ~~~g~lL~~l~~--~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFLNMLLK--LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHH--HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEec
Confidence 444444433333 56678999999999999999998877788999999999999999999987443 368999999
Q ss_pred ccccccccCC----CCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEE
Q psy10573 114 FWLRHLLLTN----PHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 114 d~~~~~~~~~----~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~ 157 (206)
+..+..+--. ..++||+|+++..-.. +++.+.+.|++||.|++-
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9433222100 1367899999988654 557888999999998864
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.32 E-value=3.8e-11 Score=91.83 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-------cccCCCceEEEEccccccccc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~i~~~~~d~~~~~~~ 121 (206)
.++.+|||+|||.|..+..++.+ +..|+|+|+|+.+++.+.+....... ......+++++.+|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 56789999999999999999974 34999999999999986432211000 000124688999994332211
Q ss_pred CCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 122 TNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+.||.|+....+ ..+++.+.++|+|||.+++.+..
T Consensus 110 --~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 110 --DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred --cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 13457888775544 23678999999999987776554
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=8.9e-11 Score=93.11 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=78.6
Q ss_pred CCCCeEEEEcccCchHH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-cCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~-~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.++.+|+|+|||.|.++ ..++....++++++++|+++++++.|++.+.. .+ ...+++|+.+|..+. .. ..+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~-~~--~l~ 194 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDV-TE--SLK 194 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhc-cc--ccC
Confidence 37799999999987554 44444445888999999999999999999853 22 135799999994432 11 235
Q ss_pred CeeEEEecCC-------hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWT-------KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~-------~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.||+|++... -..+++.+.+.|+|||.+++-...
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 6899999832 234789999999999999988753
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=5e-11 Score=88.08 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=78.3
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR 117 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 117 (206)
..+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. ..+++++.+|+.+
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK 70 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence 44555554 5778899999999999999998763 4999999999999999988753 2478999999432
Q ss_pred ccccCCCCCCeeEEEecCChH---HHHHHHHhc--ccCCcEEEEEec
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKE---EYNSWLLDQ--LVPGGRMVMPVG 159 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~--L~~gG~l~~~~~ 159 (206)
.++ ++.++|.|+++.+.+ .++.++.+. +.++|.+++...
T Consensus 71 -~~~--~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 71 -FDL--PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -CCc--cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 233 455689999998875 344444433 236677766543
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.30 E-value=5.5e-11 Score=94.28 Aligned_cols=109 Identities=20% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+..... ....++++++.+|....... ..++|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~--~~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLAD--TENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHh--CCCCc
Confidence 345699999999999998887754 345899999999999999998754221 12346788888884332222 24577
Q ss_pred eEEEecCC----------hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWT----------KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~----------~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+++.. ...+++.+.+.|+|||++++...+.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 99999765 2346688999999999999875543
No 123
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=6e-11 Score=92.08 Aligned_cols=99 Identities=18% Similarity=0.044 Sum_probs=70.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.++++... .++.+...+ ....+. ++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~-~~~l~~--~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAV-SDELVA--EG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEe-cccccc--cC
Confidence 567899999999999998887643 3456999999999999999887543 345555554 222333 56
Q ss_pred CCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~ 160 (206)
++||+|+++..+++ +++++.++++ |.+++....
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 78999999887654 4567777776 445444433
No 124
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=8.7e-11 Score=91.15 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.++..+++.. ++++++|+++..++.+++++.... .+++++..+....... ..+.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~ 114 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAE--HPGQ 114 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhh--cCCC
Confidence 4568899999999999998887642 489999999999999998876522 2467777763322212 4567
Q ss_pred eeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|++...++ .+++.+.+.|+|||.+++..+.
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999866543 4678999999999999988654
No 125
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.28 E-value=1.8e-11 Score=101.29 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=103.7
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~ 101 (206)
+..+.++ ..+...+.+.+.+...+ .++.+|||+|||+|.++..++... .+++++|+++.+++.+++++..++
T Consensus 205 ~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~-- 279 (374)
T TIGR02085 205 IRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG-- 279 (374)
T ss_pred ECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC--
Confidence 3333444 33455555555444322 356899999999999999998643 489999999999999999998743
Q ss_pred ccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCc
Q psy10573 102 LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177 (206)
Q Consensus 102 ~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (206)
..+++++.+|..+...- ..++||+|+++++... +++.+. .++|++++++++...+-...+..+ .+
T Consensus 280 ---~~~~~~~~~d~~~~~~~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-----~g 348 (374)
T TIGR02085 280 ---LDNLSFAALDSAKFATA--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-----SG 348 (374)
T ss_pred ---CCcEEEEECCHHHHHHh--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-----cC
Confidence 34799999994332211 1234799999988543 334443 468999999888765533333333 35
Q ss_pred eEEEEEEeeEEeeeccc
Q psy10573 178 TIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (206)
|.. +.+....+.|.+.
T Consensus 349 y~l-~~~~~~DmFPqT~ 364 (374)
T TIGR02085 349 YQI-ERVQLFDMFPHTS 364 (374)
T ss_pred ceE-EEEEEeccCCCCC
Confidence 777 7777777777654
No 126
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.28 E-value=6.8e-11 Score=97.23 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..++.....+.+... |++|||+.|-||.++..++.... .++++||.|..+++.|+++++.++. ...++.|+.+|
T Consensus 203 lDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~D 276 (393)
T COG1092 203 LDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGD 276 (393)
T ss_pred HHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCC---Cccceeeehhh
Confidence 345555555655456 99999999999999999986432 3999999999999999999998663 24568999999
Q ss_pred ccccccc-CCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLL-TNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~-~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.... .-...+||+|+++++- ..+...+.++|+|||++++++.+..
T Consensus 277 vf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 277 VFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 4332221 1134588999999883 2366889999999999999988765
No 127
>PLN02366 spermidine synthase
Probab=99.28 E-value=9.7e-11 Score=94.11 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+||++|||.|..+..+++.. +..+++.+|+++.+++.+++.+..... ....++++++.+|...... ..++++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~-~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLK-NAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHh-hccCCCC
Confidence 567899999999999999998753 345899999999999999998865221 1335789999999432221 1135678
Q ss_pred eEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++... ..+++.+.+.|+|||+++....+
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 999997543 23668899999999999875544
No 128
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=7.6e-11 Score=97.91 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
..++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..++.+ ..+++++.+|+.+.. .+....+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHHHHhcCC
Confidence 346889999999999998876542 2348999999999999999999874421 137899999943321 1111245
Q ss_pred CeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|+++++. ..+...+.++|+|||+++.++.+..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 78999999774 1234567899999999998776543
No 129
>KOG2904|consensus
Probab=99.28 E-value=1.1e-10 Score=90.13 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=100.5
Q ss_pred cCccccccccccCccccCcHHH---HHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHI---HAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~ 90 (206)
...|.+-......+-.|+.|+. +.++++.+.+. ...+..++|+|||+|..+..++..+ +.+.++++|.|+.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHH
Confidence 4455555555555777777765 44444544421 1345589999999999999999988 57899999999999999
Q ss_pred HHHhhhccCccccCCCceEEEEc----ccccccccCCCCCCeeEEEecCCh-----------------------------
Q psy10573 91 SIKNIDKGNSELLDQGRVQFVAY----FWLRHLLLTNPHGSTRVIQSCWTK----------------------------- 137 (206)
Q Consensus 91 a~~~~~~~~~~~~~~~~i~~~~~----d~~~~~~~~~~~~~~D~i~~~~~~----------------------------- 137 (206)
|.+|+.+..+. .++.++.. |+....+. ..+.+|++++|++.
T Consensus 188 a~eN~qr~~l~----g~i~v~~~~me~d~~~~~~l--~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~ 261 (328)
T KOG2904|consen 188 AKENAQRLKLS----GRIEVIHNIMESDASDEHPL--LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGY 261 (328)
T ss_pred HHHHHHHHhhc----CceEEEeccccccccccccc--ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchh
Confidence 99999885432 45666644 33333333 67889999999883
Q ss_pred ---HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 138 ---EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 138 ---~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++..-..++|+|||.+.+.....
T Consensus 262 ~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 262 DNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred HHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 224456688999999999887743
No 130
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.27 E-value=2e-11 Score=102.92 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 34 PHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 34 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
+...+.+.+.+.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.|++++..++ ..+++++
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~ 345 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNG-----IANVEFL 345 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhC-----CCceEEE
Confidence 44444444444332 45678999999999999999987642 89999999999999999998733 4589999
Q ss_pred Ecccccccc-cCCCCCCeeEEEecCCh----HHHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEEEEEEee
Q psy10573 112 AYFWLRHLL-LTNPHGSTRVIQSCWTK----EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRG 186 (206)
Q Consensus 112 ~~d~~~~~~-~~~~~~~~D~i~~~~~~----~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (206)
.+|+.+..+ +...+++||+|+++++- ..+++.+. .++|++++++++...+ ..+.+......+|.. ..+..
T Consensus 346 ~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~t---lard~~~l~~~gy~~-~~~~~ 420 (431)
T TIGR00479 346 AGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPAT---LARDLEFLCKEGYGI-TWVQP 420 (431)
T ss_pred eCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHH---HHHHHHHHHHCCeeE-EEEEE
Confidence 999433211 10134578999998874 34555444 4789888877755432 111222222345776 67777
Q ss_pred EEeeecc
Q psy10573 187 VRTNPLY 193 (206)
Q Consensus 187 ~~~~~~~ 193 (206)
..+.|.+
T Consensus 421 ~DmFP~T 427 (431)
T TIGR00479 421 VDMFPHT 427 (431)
T ss_pred eccCCCC
Confidence 6666654
No 131
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=2.8e-10 Score=87.70 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcc--CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 36 IHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 36 ~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
....+.+.+... ...+.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++...
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 100 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCT 100 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeC
Confidence 344455554421 1347899999999999999887643 379999999999999999887522 225788877
Q ss_pred ccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecC
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|..+.... ..++||+|++...++ .+++.+.+.|++||.+++....
T Consensus 101 d~~~~~~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 101 SVEDLAEK--GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CHHHhhcC--CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 73322111 236789999876654 3678899999999999887654
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.25 E-value=6.8e-11 Score=89.20 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=82.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
...+||||||.|.++..++... |...++|+|+....+..+.+++.. .+..|+.++++|+.......++++++|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchhe
Confidence 3489999999999999999887 788999999999999999888887 3457999999994443332247799999
Q ss_pred EEecCChH--------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 131 IQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 131 i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+++.+-+ .+++.+.+.|+|||.|.+.+-...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 99987753 377899999999999998887654
No 133
>PHA03412 putative methyltransferase; Provisional
Probab=99.25 E-value=1.6e-10 Score=88.47 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=79.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.|++++.+.+...+... ...+.+|||+|||+|.++..+++... +..+++++|+++.+++.|+++.
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------- 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------- 96 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------
Confidence 57777777776665422 12367999999999999999887531 3458999999999999999764
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH------------------HHHHHHHhcccCCcEEEEE
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE------------------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------------------~~~~~~~~~L~~gG~l~~~ 157 (206)
.++.++.+|+.. ..+ +++||+|++|+++. .+++.+.+++++|+ +|++
T Consensus 97 -~~~~~~~~D~~~-~~~---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP 161 (241)
T PHA03412 97 -PEATWINADALT-TEF---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIP 161 (241)
T ss_pred -cCCEEEEcchhc-ccc---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeC
Confidence 247888888432 112 45789999998852 14566677666666 4444
No 134
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=2.3e-10 Score=76.34 Aligned_cols=96 Identities=28% Similarity=0.240 Sum_probs=73.7
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+|||+|..+..++. . ...+++++|+++..+..+++.... ....++.++..|..+.... ..+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAA-----LLADNVEVLKGDAEELPPE--ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhc-----ccccceEEEEcChhhhccc--cCCceEEEE
Confidence 489999999999998887 2 456999999999999998853332 2235788888884433322 456789999
Q ss_pred ecCCh-------HHHHHHHHhcccCCcEEEEE
Q psy10573 133 SCWTK-------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 133 ~~~~~-------~~~~~~~~~~L~~gG~l~~~ 157 (206)
++.++ ..+++.+.+.++++|.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98876 34668889999999999876
No 135
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=103.63 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..++.+ ..+++++.+|+.+...- ..++|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~--~~~~f 609 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKE--AREQF 609 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHH--cCCCc
Confidence 457899999999999999998742 237999999999999999999875421 14799999994332211 14568
Q ss_pred eEEEecCCh-----------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+++++. ..++..+.++|+|||.+++++....
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999998873 2356778899999999988776543
No 136
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=2.7e-10 Score=87.62 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=73.6
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH 118 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 118 (206)
.+.+.+.....++.+|||+|||+|.++..+++. ..+++|+|+++.++..+++++..... ..++.+..+|+..
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~- 115 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLS- 115 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhh-
Confidence 344444321346789999999999999999864 34899999999999999998875221 1368888888432
Q ss_pred cccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEE
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~ 156 (206)
. + ++||+|++...+.+ ++.++.+.+++++++.+
T Consensus 116 --~--~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 116 --L--C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --C--C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 2 66799988665532 45667777776554443
No 137
>PRK03612 spermidine synthase; Provisional
Probab=99.23 E-value=1.1e-10 Score=100.47 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--hhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN--IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++ +...+....+.++++++.+|..+.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCC
Confidence 567899999999999999988642 335999999999999999984 322111112347899999994433222 346
Q ss_pred CeeEEEecCChH-----------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+||+|+++...+ .+.+.+.+.|+|||++++...++
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 789999986532 25678899999999999876543
No 138
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=5e-10 Score=102.11 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=100.4
Q ss_pred cCccccccccccCccccCcHHHHHHHHHHhhccCC---CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a 91 (206)
...|....+...-+-.+++|+....+-. +..... ++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|
T Consensus 81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 4455566666666677777765444333 442211 24689999999999999999876 556999999999999999
Q ss_pred HHhhhccCccc-----------cCCCceEEEEcccccccccCCCCCCeeEEEecCCh-----------------------
Q psy10573 92 IKNIDKGNSEL-----------LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------------------- 137 (206)
Q Consensus 92 ~~~~~~~~~~~-----------~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------------------- 137 (206)
++|+..+..+. ....+++++.+|+.+...- ....||+|++|++.
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99998743210 1124799999995432211 12368999998772
Q ss_pred ---------------------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 138 ---------------------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 138 ---------------------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
..++..+.+.|+|||.+++.+....+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 01335567799999999998887653
No 139
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.21 E-value=4.6e-10 Score=86.15 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-c------cccCCCceEEEEcccccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-S------ELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~------~~~~~~~i~~~~~d~~~~~~ 120 (206)
..++.+|||+|||.|..+..|+.+ +.+|+|+|+|+.+++.+.+...... . ......++++..+|+.+..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 456789999999999999999874 4599999999999998643211100 0 00113578889998433222
Q ss_pred cCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEE
Q psy10573 121 LTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~ 157 (206)
. ..+.||.|+....+. .+++.+.++|+|||++++.
T Consensus 112 ~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 112 A--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred c--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1 224779998655443 3578899999999865543
No 140
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.21 E-value=1.8e-10 Score=87.06 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 126 (206)
+.++.+|||+|||+|.++..+++.. ...++++|+++.+++.+++ .+++++.+|..+.. ++ +++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~~~--~~~ 74 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLEAF--PDK 74 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhccccc--CCC
Confidence 5678899999999999998887643 3478999999999988864 24677777743322 34 678
Q ss_pred CeeEEEecCChHHHH---HHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYN---SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~---~~~~~~L~~gG~l~~~~~~ 160 (206)
+||+|+++..++++. ..+.+++++++.++++.++
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 899999998876531 2233344556666655443
No 141
>KOG2915|consensus
Probab=99.20 E-value=2.8e-10 Score=87.73 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=104.3
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+..-+|..+...++++..|. +.||..|+|-|+|+|.++-.+++..+|.++++.+|+.+...+.|.+.+++.+.
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---- 155 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---- 155 (314)
T ss_pred ccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----
Confidence 344566777778889999998 99999999999999999999999999999999999999999999999998442
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChHH-HHHHHHhcccCCc-EEEEEecCCC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE-YNSWLLDQLVPGG-RMVMPVGEPF 162 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG-~l~~~~~~~~ 162 (206)
..+++++.-| .....|......+|.|+.+.+.++ .+-.+.++||.+| +++...++.+
T Consensus 156 ~~~vt~~hrD-Vc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 156 GDNVTVTHRD-VCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred CcceEEEEee-cccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 3689999999 333445345678899999877655 3344556787655 7776677655
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.18 E-value=3.9e-10 Score=91.45 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc-----CCCceEEEEcccc-cccccCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-----DQGRVQFVAYFWL-RHLLLTN 123 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-----~~~~i~~~~~d~~-~~~~~~~ 123 (206)
++.+|||+|||-|+.+.-+... .-..++|+|++...++.|++++........ ..-...++.+|.. ....-.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999988877653 334999999999999999999943110000 0123567777721 1111012
Q ss_pred CC--CCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 124 PH--GSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 124 ~~--~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++ ..||+|.+...+|. ++..+...|+|||+++.+++...
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 33 58999999998864 67899999999999999999865
No 143
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.18 E-value=5.7e-10 Score=94.32 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=87.4
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++.+|||+|||+|.=+..++..++..+.+++.|+++..++.+++++.+ .+..++.+...|....... ..+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-----~G~~nv~v~~~D~~~~~~~--~~~~ 183 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-----CGVSNVALTHFDGRVFGAA--LPET 183 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeEEEEeCchhhhhhh--chhh
Confidence 57899999999999999999999887677999999999999999999988 4456788888883322112 2456
Q ss_pred eeEEEecCChH----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKE----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||.|+++.++. .+++.+.+.|+|||+|+-++++-.
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 89999988851 256788899999999999988744
No 144
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.18 E-value=4.2e-10 Score=80.76 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=102.3
Q ss_pred CccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
+.|.+.+..+|. .--+++.+.+.|...+. ...+..|||+|.|+|.++..++++.-+...++++|.|++.+....+.+
T Consensus 17 k~wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 17 KGWIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred HHHhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC
Confidence 345566677662 23367888999998887 788999999999999999999877656669999999999999998876
Q ss_pred hccCccccCCCceEEEEcccccc----cccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 96 DKGNSELLDQGRVQFVAYFWLRH----LLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. .+.++.+|.... ..+ ++..||.|++..++- .+++.+...|.+||.++..++++-
T Consensus 94 p----------~~~ii~gda~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 94 P----------GVNIINGDAFDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C----------CccccccchhhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 4 355788882211 123 566789999987752 367888999999999999999854
No 145
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.15 E-value=4.5e-10 Score=86.27 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=87.7
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
..+||||||.|.+...+++.. |...++|||+....+..+.+.+.+. +..|+.+++.|+.....+-.++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~-----~l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKEL-----GLKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999887 8889999999999999999888873 3349999999955544433467799999
Q ss_pred EecCChH--------------HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 132 QSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 132 ~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
+++.+.+ .+++.+.+.|+|||.|.+.+-....
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 9987742 3778999999999999998876553
No 146
>KOG1975|consensus
Probab=99.14 E-value=2.6e-10 Score=89.86 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-cCccccCCCceEEEEcccc-----ccccc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVAYFWL-----RHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~-----~~~~~ 121 (206)
.+++..++++|||-|+.++.+-+.. -+.++++||++..++.|++++.+ .+....-...+.|+.+|.. +..++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 4788999999999999988776432 24899999999999999999986 2111011124688999822 12223
Q ss_pred CCCCCCeeEEEecCChHH----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEE----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
++.+||+|.|...+|. ++.++.+.|+|||.++.++|...
T Consensus 193 --~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 --KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred --CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 5556899999888753 56788999999999999999864
No 147
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.14 E-value=1.3e-09 Score=84.19 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=71.8
Q ss_pred HHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 38 AQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 38 ~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
..+.+.+... ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+. ..++++..+|..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~ 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCch
Confidence 3444454421 3567899999999999999998753 3799999999999999998865221 146888888832
Q ss_pred cccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEE
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~ 155 (206)
. .+++||+|++...+++ +++.+.+.++ +|.++
T Consensus 123 ----~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i 162 (230)
T PRK07580 123 ----S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIF 162 (230)
T ss_pred ----h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEE
Confidence 2 3567899998776633 3455555544 44343
No 148
>KOG2899|consensus
Probab=99.14 E-value=4.4e-10 Score=85.33 Aligned_cols=125 Identities=24% Similarity=0.223 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-cccc------------
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELL------------ 103 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~------------ 103 (206)
....+..|.+....+..+|||||.+|.++..+++.+++. .+.|+||++..+..|+++++-.. .+..
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 333445555555677899999999999999999999765 79999999999999999987311 0000
Q ss_pred ----------------C-CCceEEEEccc-cccccc-CCCCCCeeEEEecCC------------hHHHHHHHHhcccCCc
Q psy10573 104 ----------------D-QGRVQFVAYFW-LRHLLL-TNPHGSTRVIQSCWT------------KEEYNSWLLDQLVPGG 152 (206)
Q Consensus 104 ----------------~-~~~i~~~~~d~-~~~~~~-~~~~~~~D~i~~~~~------------~~~~~~~~~~~L~~gG 152 (206)
+ ..++.+...+. .+...| ......||+|.|-.. +..++.+++++|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0 00222222220 000000 124567899977322 3457799999999999
Q ss_pred EEEEEecCCC
Q psy10573 153 RMVMPVGEPF 162 (206)
Q Consensus 153 ~l~~~~~~~~ 162 (206)
++++.-..+.
T Consensus 204 iLvvEPQpWk 213 (288)
T KOG2899|consen 204 ILVVEPQPWK 213 (288)
T ss_pred EEEEcCCchH
Confidence 9998765544
No 149
>PHA03411 putative methyltransferase; Provisional
Probab=99.12 E-value=2.2e-09 Score=84.11 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=79.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 106 (206)
.|++++.+.+...++ +. .....+|||+|||+|.++..++... +..+++++|+++.+++.+++++ +
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------P 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------c
Confidence 577776666654442 22 3446799999999999998887764 3459999999999999998764 3
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCChHH--------------------------HHHHHHhcccCCcEEEEE
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE--------------------------YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~l~~~ 157 (206)
+++++.+|..+. . .+.+||+|++++++.. .+......|+|+|.+++.
T Consensus 110 ~v~~v~~D~~e~--~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 110 EAEWITSDVFEF--E--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CCEEEECchhhh--c--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 578888884321 1 2457899999988632 223445678888876665
No 150
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.12 E-value=2.3e-10 Score=94.25 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 33 SPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
.+...+.+.+.+.+.+.+ +.++||++||+|.++..+++... +|+++|+++.+++.+++++..++ ..+++++
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~ 259 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANG-----IDNVQII 259 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 345566666666544432 35799999999999998887653 89999999999999999988743 3489999
Q ss_pred Ecccccccc-cC-C-----------CCCCeeEEEecCChHHHHHHHHhc-ccCCcEEEEEecCCCCCeeEEEEEecCCCc
Q psy10573 112 AYFWLRHLL-LT-N-----------PHGSTRVIQSCWTKEEYNSWLLDQ-LVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177 (206)
Q Consensus 112 ~~d~~~~~~-~~-~-----------~~~~~D~i~~~~~~~~~~~~~~~~-L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (206)
.+|+.+... +. . ....||+|+.+++-..+.+++.+. .++++++++++...+-...+..+. . +
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-g 335 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-T 335 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-C
Confidence 999432211 10 0 012579999999864433333332 347888888877644222233332 2 4
Q ss_pred eEEEEEEeeEEeeeccc
Q psy10573 178 TIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (206)
|.. ..+....+.|.+.
T Consensus 336 Y~l-~~v~~~DmFPqT~ 351 (362)
T PRK05031 336 HKV-ERFALFDQFPYTH 351 (362)
T ss_pred cEE-EEEEEcccCCCCC
Confidence 777 7777777777654
No 151
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.11 E-value=7.6e-10 Score=87.73 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~ 127 (206)
..+++|||+.|-+|.++..++... ..+|+.||.|..+++.+++++..++. ...+++++..|+.+... . -..+.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~-~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRL-KKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHH-HHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHH-hcCCC
Confidence 458999999999999999887533 23899999999999999999998653 24578999999432211 1 02457
Q ss_pred eeEEEecCCh------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+||++++. ..++..+.++|+|||.+++++.+..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 8999999883 3477888999999999998888765
No 152
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.10 E-value=2.5e-09 Score=84.04 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=80.0
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
..+||.+ ..+.+...+++.+. ..++.+|||+|||+|.++..+++... .++++|+++.+++.+++++..
T Consensus 5 k~~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~------ 73 (253)
T TIGR00755 5 KSLGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL------ 73 (253)
T ss_pred CCCCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc------
Confidence 3456655 66888888988886 67889999999999999999998763 799999999999999987643
Q ss_pred CCCceEEEEcccccccccCCCCCCee---EEEecCChHHHHHHHHhcc
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTR---VIQSCWTKEEYNSWLLDQL 148 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D---~i~~~~~~~~~~~~~~~~L 148 (206)
..+++++.+|... .++ + ++| +|+++.+.+-....+.+++
T Consensus 74 -~~~v~v~~~D~~~-~~~--~--~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 74 -YERLEVIEGDALK-VDL--P--DFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred -CCcEEEEECchhc-CCh--h--HcCCcceEEEcCChhhHHHHHHHHh
Confidence 2578999999322 222 1 345 8898888765444444444
No 153
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.10 E-value=1.5e-09 Score=87.61 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
....+++.+... ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...........++.+...|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 344555555421 125789999999999999999874 3499999999999999999876521100112357787777
Q ss_pred cccccccCCCCCCeeEEEecCChHH
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
... .+++||+|++...+++
T Consensus 206 l~~------l~~~fD~Vv~~~vL~H 224 (315)
T PLN02585 206 LES------LSGKYDTVTCLDVLIH 224 (315)
T ss_pred hhh------cCCCcCEEEEcCEEEe
Confidence 321 2466799998766543
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.10 E-value=1.2e-09 Score=86.70 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=74.5
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
.+|+.+ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~------- 86 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE------- 86 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc-------
Confidence 345544 66778888888776 6788999999999999999999875 3 899999999999999887642
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
.+++++.+|+.+ .++ ++-..|.|++|.+..
T Consensus 87 -~~v~~i~~D~~~-~~~--~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 87 -DNLTIIEGDALK-VDL--SELQPLKVVANLPYN 116 (272)
T ss_pred -CceEEEEChhhc-CCH--HHcCcceEEEeCCcc
Confidence 579999999432 222 221148899988864
No 155
>PLN02823 spermine synthase
Probab=99.09 E-value=2.2e-09 Score=87.22 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
....+||.+|+|.|..++.+++.. +..+++.+|+++.+++.+++.+...... ...++++++.+|....... .+++|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~--~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEK--RDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhh--CCCCc
Confidence 456799999999999999888754 3458999999999999999998652211 2357899999994443333 45678
Q ss_pred eEEEecCCh------------HHHHH-HHHhcccCCcEEEEEecC
Q psy10573 129 RVIQSCWTK------------EEYNS-WLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 129 D~i~~~~~~------------~~~~~-~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+++..- ..+.+ .+.+.|+|||++++...+
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 999997321 12456 788999999999876544
No 156
>KOG3010|consensus
Probab=99.09 E-value=5.3e-10 Score=84.89 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=70.7
Q ss_pred CCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++. .++|+|||+|..++.++.... +|+++|+|+.+++.+++.....-+ .....+...+ ..++-=.+++
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~---~v~L~g~e~S 100 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDE---MVDLLGGEES 100 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCccccccc---cccccCCCcc
Confidence 4444 899999999988888888764 999999999999999887543110 0011111111 1112002789
Q ss_pred eeEEEecCChHH-----HHHHHHhcccCCc-EEEEEecC
Q psy10573 128 TRVIQSCWTKEE-----YNSWLLDQLVPGG-RMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~-----~~~~~~~~L~~gG-~l~~~~~~ 160 (206)
+|+|++...+|. +.+.++++|++.| .+.+..+.
T Consensus 101 VDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999999888765 5688899998655 88887776
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.08 E-value=2.3e-09 Score=84.49 Aligned_cols=96 Identities=25% Similarity=0.268 Sum_probs=76.2
Q ss_pred cCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccC
Q psy10573 26 GYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (206)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~ 104 (206)
-+||++ ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~------- 73 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA------- 73 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------
Confidence 356666 67888889988876 6788999999999999999999863 3899999999999999988753
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
..+++++.+|..+ .++ ..+|.|++|.+..
T Consensus 74 ~~~v~ii~~D~~~-~~~----~~~d~Vv~NlPy~ 102 (258)
T PRK14896 74 AGNVEIIEGDALK-VDL----PEFNKVVSNLPYQ 102 (258)
T ss_pred CCCEEEEEecccc-CCc----hhceEEEEcCCcc
Confidence 2579999999432 222 2369999987764
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.08 E-value=7e-09 Score=77.29 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=81.1
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHhhhccCc
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR---------VYGVEHVMELAESSIKNIDKGNS 100 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~---------v~~iD~s~~~~~~a~~~~~~~~~ 100 (206)
....|.+...|+.... ..++..+||-.||+|++....+... .... ++|+|+++.++..+++++...+.
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3356777777877766 7888999999999999999887665 3334 89999999999999999987443
Q ss_pred cccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHHhcccCCcEEEEEe
Q psy10573 101 ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 101 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+ ..+.+...|. ...++ .++++|+|++|+++ ..+.+++.+++++ ..+++++
T Consensus 87 ~----~~i~~~~~D~-~~l~~--~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 E----DYIDFIQWDA-RELPL--PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp C----GGEEEEE--G-GGGGG--TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred C----CceEEEecch-hhccc--ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 2 4588988883 33334 67889999999885 2355788888888 3343333
No 159
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.07 E-value=3.6e-09 Score=83.48 Aligned_cols=103 Identities=21% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHH--HhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI--KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~--~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
-.|.+|||||||+|+++..++... +. .|+|+|.++...-..+ +++.. ....+.++... .+..+. .+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~G-A~-~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~~lplg-vE~Lp~---~~ 181 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRG-AK-SVIGIDPSPLFYLQFEAIKHFLG------QDPPVFELPLG-VEDLPN---LG 181 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcC-CC-EEEEECCChHHHHHHHHHHHHhC------CCccEEEcCcc-hhhccc---cC
Confidence 468899999999999999888764 32 8999999987654422 22211 01223333222 222221 45
Q ss_pred CeeEEEecCChHH------HHHHHHhcccCCcEEEEEecCCCC
Q psy10573 127 STRVIQSCWTKEE------YNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 127 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.||+|++-.++.| .+.++...|++||.+++.+.-..+
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 6899999988865 568899999999999988775443
No 160
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.06 E-value=3.8e-09 Score=83.67 Aligned_cols=122 Identities=24% Similarity=0.162 Sum_probs=89.2
Q ss_pred HHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+..++..+.....+ ..+||-||.|.|..++.+++.. +..+++.+|+++.+++.+++.+........ .+++.++.+|
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~D 138 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDD 138 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEecc
Confidence 444444444322222 2699999999999999999876 455999999999999999999987332212 5899999999
Q ss_pred cccccccCCCCCCeeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..+...- ...+||+|+++..- ..+.+.|.+.|+++|+++..+.++
T Consensus 139 g~~~v~~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 139 GVEFLRD--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred HHHHHHh--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 3333221 22367999997553 346799999999999999885553
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.06 E-value=5.3e-10 Score=91.85 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhhccCC-CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 34 PHIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
+.....+++.+.+.+. .+.+|||+|||+|.++..+++... +++++|+++.+++.+++++..++ ..+++++.
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~ 251 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIR 251 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEE
Confidence 4445555555444333 234799999999999998887653 89999999999999999998743 34799999
Q ss_pred cccccccc--cC---C---C-----CCCeeEEEecCChHHHHHHH-HhcccCCcEEEEEecCCCCCeeEEEEEecCCCce
Q psy10573 113 YFWLRHLL--LT---N---P-----HGSTRVIQSCWTKEEYNSWL-LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 178 (206)
Q Consensus 113 ~d~~~~~~--~~---~---~-----~~~~D~i~~~~~~~~~~~~~-~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (206)
+|..+... .. + . ...||+|+.+++-..+...+ ..+.+|++++++++...+-...+..+. .+ |
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y 327 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-H 327 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-c
Confidence 99432111 00 0 0 12379999999843332223 223357888888877755323333332 22 7
Q ss_pred EEEEEEeeEEeeeccc
Q psy10573 179 IVTTVVRGVRTNPLYR 194 (206)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (206)
.. ..+....+.|.+.
T Consensus 328 ~l-~~v~~~DmFP~T~ 342 (353)
T TIGR02143 328 RV-ERFALFDQFPYTH 342 (353)
T ss_pred EE-EEEEEcccCCCCC
Confidence 76 7777776666653
No 162
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=1e-08 Score=77.03 Aligned_cols=118 Identities=18% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.+.+...+.. .-.+.++||++||+|.++..++.+.. .+++++|.++.+++.+++++..++.+ .+++++.+|
T Consensus 35 ~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D 107 (189)
T TIGR00095 35 VVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNS 107 (189)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehh
Confidence 344455555532 23578999999999999999988652 38999999999999999999874321 368899999
Q ss_pred cccccc-cCCCCC-CeeEEEecCChH-----HHHHHHH--hcccCCcEEEEEecC
Q psy10573 115 WLRHLL-LTNPHG-STRVIQSCWTKE-----EYNSWLL--DQLVPGGRMVMPVGE 160 (206)
Q Consensus 115 ~~~~~~-~~~~~~-~~D~i~~~~~~~-----~~~~~~~--~~L~~gG~l~~~~~~ 160 (206)
...... + ...+ .+|+|+.++++. .+++.+. .+|+++|++++....
T Consensus 108 ~~~~l~~~-~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 108 ALRALKFL-AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHHHh-hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 433221 1 0122 379999988863 2333332 368899988877654
No 163
>KOG3191|consensus
Probab=99.04 E-value=7.2e-09 Score=75.51 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
....++|||||+|..+..+++..++.....++|+++.+.+..++.+..+. ..++.++.|... .+..++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~----~l~~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLS----GLRNESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHh----hhccCCcc
Confidence 46789999999999999999988887778899999999999998887643 357888888432 23458889
Q ss_pred EEEecCCh---------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTK---------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~---------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++.|++. ..++..+-..|.|.|.+++.....+
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 99998773 2244566778899999998876554
No 164
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.4e-09 Score=77.29 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=70.2
Q ss_pred ccccCcHHHHHHHHHHhh-ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC
Q psy10573 28 GADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 106 (206)
-|..+.+.+.+.++.... .-.-.+..|+|+|||||.+++.++... +. .|+++|+++++++.++++..+. ..
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~-~V~~vdiD~~a~ei~r~N~~~l------~g 93 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-AS-RVLAVDIDPEALEIARANAEEL------LG 93 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-Cc-EEEEEecCHHHHHHHHHHHHhh------CC
Confidence 344455556555555443 112456789999999999999887543 43 9999999999999999999862 25
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
++.|+.+|... -.+.+|.++.|+++
T Consensus 94 ~v~f~~~dv~~------~~~~~dtvimNPPF 118 (198)
T COG2263 94 DVEFVVADVSD------FRGKFDTVIMNPPF 118 (198)
T ss_pred ceEEEEcchhh------cCCccceEEECCCC
Confidence 79999999433 23445999999886
No 165
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.03 E-value=3.9e-09 Score=80.93 Aligned_cols=122 Identities=24% Similarity=0.273 Sum_probs=81.3
Q ss_pred ccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc--cC-----c
Q psy10573 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK--GN-----S 100 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~-----~ 100 (206)
...-..|.+.+.+-. +. ..++.+||..|||.|..+..|+... .+|+|+|+|+.+++.+.+.... .. .
T Consensus 18 ~~~~~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 18 DQGEPNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp --TTSTHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence 333356666666555 44 6778899999999999999999753 4999999999999998332211 10 0
Q ss_pred cccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEE
Q psy10573 101 ELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 101 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~ 157 (206)
......+|+++++|+.+..+- ..++||+|+-...+ ..+.+.+.++|+|||.+++.
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~--~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPE--DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGS--CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred eeecCCceEEEEcccccCChh--hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 001234689999994332221 23578999887665 34778999999999994433
No 166
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=6.7e-09 Score=83.47 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|.+.+.+.+... +++|..|||--||||++...+.-. +++++|+|++..++.-++.|+...+ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 45777777777765 899999999999999999988653 3599999999999999999998732 2355555
Q ss_pred Ec-ccccccccCCCCCCeeEEEecCCh---------------HHHHHHHHhcccCCcEEEEEec
Q psy10573 112 AY-FWLRHLLLTNPHGSTRVIQSCWTK---------------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 112 ~~-d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. | ....++ ++.++|.|+++++. ...++.+.++|++||++++..+
T Consensus 251 ~~~D-a~~lpl--~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLD-ATNLPL--RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred Eecc-cccCCC--CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55 7 444556 78889999998873 3466889999999999999988
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.02 E-value=3.7e-09 Score=84.61 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=78.6
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
...||++ ..+.+...+++.+. +.++..|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~---- 82 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP---- 82 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----
Confidence 4457777 67888999998876 7888999999999999999998754 389999999999999999886521
Q ss_pred CCCceEEEEcccccccccCCCCCCeeEEEecCChH
Q psy10573 104 DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE 138 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~ 138 (206)
...+++++.+|+.+. .-..+|+|++|.+..
T Consensus 83 ~~~~v~ii~~Dal~~-----~~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LASKLEVIEGDALKT-----EFPYFDVCVANVPYQ 112 (294)
T ss_pred CCCcEEEEECCHhhh-----cccccCEEEecCCcc
Confidence 135799999994331 123469999987763
No 168
>KOG2361|consensus
Probab=99.01 E-value=1.4e-09 Score=82.63 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=96.4
Q ss_pred cCccccccccccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSI 92 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~ 92 (206)
...|+|.-+..-.+.++ ...++....-+.+.---.+..+||++|||.|.....+++... ++-.+++.|.|+.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 45566666665555554 335666666665541112233799999999999999987652 2368899999999999999
Q ss_pred HhhhccCccccCCCceEEEEcccc-cccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 93 KNIDKGNSELLDQGRVQFVAYFWL-RHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
++-.- +..++.....|.. +....-...+++|+|++...+ ...++.+.++|||||.+++.-++..+
T Consensus 115 ~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 115 KSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hcccc------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 87653 1233433333421 111222378899999776554 34678999999999999999888764
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.01 E-value=6.7e-09 Score=83.76 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEEE-ccccc-ccccCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVA-YFWLR-HLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~~-~d~~~-~~~~~~~~~ 126 (206)
.+.++||||||+|.....++... ++.+++++|+++.+++.|++++..+ +. ..++.++. .|... ......+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCC
Confidence 45799999999998887777655 5679999999999999999999884 32 24677754 23111 011101466
Q ss_pred CeeEEEecCChHH
Q psy10573 127 STRVIQSCWTKEE 139 (206)
Q Consensus 127 ~~D~i~~~~~~~~ 139 (206)
.||+|+||++++.
T Consensus 189 ~fDlivcNPPf~~ 201 (321)
T PRK11727 189 RFDATLCNPPFHA 201 (321)
T ss_pred ceEEEEeCCCCcC
Confidence 8899999999854
No 170
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.00 E-value=4.9e-10 Score=84.46 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
.++.|...+.++..+. ..+=.++||+|||||-.+..+..... +++|+|+|+.|++.|.++-- .-+
T Consensus 107 ~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~----------YD~ 171 (287)
T COG4976 107 GYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGL----------YDT 171 (287)
T ss_pred cCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccc----------hHH
Confidence 3456777777777765 44457999999999999988877664 89999999999999986421 112
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCCCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEPFKG 164 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~~~~ 164 (206)
+.+++...... .+.+..||+|++..++. .++-.+...|+|||.+.+++....+.
T Consensus 172 L~~Aea~~Fl~-~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 172 LYVAEAVLFLE-DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHHHHHHhh-hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 33333221111 02455679998877764 46677889999999999998876543
No 171
>PRK00536 speE spermidine synthase; Provisional
Probab=99.00 E-value=6.9e-09 Score=81.30 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcc-CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
++..++-..... ....++||-+|.|.|..++.+++. +. +|+.+|+++++++.+++.+..... ..+.++++++..-
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~~ 132 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQL 132 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeehh
Confidence 455554443321 255689999999999999999986 33 999999999999999998876222 2456788877521
Q ss_pred cccccccCCCCCCeeEEEecCCh-HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTK-EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+ - ..++||+|+++... ....+.+.+.|+|||+++....++.
T Consensus 133 -~~---~--~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 133 -LD---L--DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred -hh---c--cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 11 1 23567999998443 4566889999999999998776654
No 172
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.99 E-value=9.6e-09 Score=77.07 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHhhccCCCCCe-EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE--EEccc
Q psy10573 39 QMLELLKDKIKPGAR-ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VAYFW 115 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~-vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~--~~~d~ 115 (206)
.+++.|.+.+.+... |||||||||..+.++++.+ |+....-.|.++..+..........+.... .+.+.+ -..++
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv-~~P~~lDv~~~~w 90 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNV-RPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCccc-CCCeEeecCCCCC
Confidence 355555555555554 9999999999999999998 777778889999887777776665333211 112222 11111
Q ss_pred ccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.-..+.....++||.|++...+| .+++.+.+.|++||.++++-+-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 11111011466889999988865 3678889999999999877553
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=1.8e-08 Score=77.41 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-------CccccC
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------NSELLD 104 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~ 104 (206)
..|.+.+.+.+. . ..++.+||+.|||.|..+..|+... .+|+|+|+|+.+++.+.+..... ......
T Consensus 28 pnp~L~~~~~~l-~--~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSKL-N--INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHhc-C--CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 556565555442 2 3567899999999999999999854 38999999999999986532110 000011
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCChH--------HHHHHHHhcccCCcEEEEEecC
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+++++++|+.+..+..-..+.||.|+....+. .+.+.+.++|+|||.+++.+..
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2468999999433211100125689998766653 3668899999999999888764
No 174
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.98 E-value=1e-08 Score=76.52 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred ccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
+.+.-.+.+.+...|....-.+.++||+.||+|.++..++.+.. .+++.||.++.++...+++++..+.. .+++
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~ 95 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLE----DKIR 95 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-G----GGEE
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCC----ccee
Confidence 33445567777777763214689999999999999998887653 39999999999999999999873322 3588
Q ss_pred EEEcccccccc-cCCCCCCeeEEEecCChH------HHHHHHH--hcccCCcEEEEEecCC
Q psy10573 110 FVAYFWLRHLL-LTNPHGSTRVIQSCWTKE------EYNSWLL--DQLVPGGRMVMPVGEP 161 (206)
Q Consensus 110 ~~~~d~~~~~~-~~~~~~~~D~i~~~~~~~------~~~~~~~--~~L~~gG~l~~~~~~~ 161 (206)
++..|...... .......||+|+++++.. .+++.+. .+|+++|++++.....
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 88888322211 001456789999999863 2445554 6789999999988665
No 175
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.97 E-value=6.4e-09 Score=84.16 Aligned_cols=130 Identities=22% Similarity=0.179 Sum_probs=86.4
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHhhhcc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA------GPEGRVYGVEHVMELAESSIKNIDKG 98 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~ 98 (206)
...|+.++...+...|.+.+. ..++.+|+|.+||+|.+...+.+.. ....+++|+|+++.....|+-++...
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~ 100 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH 100 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT
T ss_pred cccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh
Confidence 345777788888888888885 6778899999999999998887643 24569999999999999998777543
Q ss_pred CccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH---------------------------HHHHHHHhcccCC
Q psy10573 99 NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE---------------------------EYNSWLLDQLVPG 151 (206)
Q Consensus 99 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~---------------------------~~~~~~~~~L~~g 151 (206)
+. ......+..+|....... .....||+|++++++- .++..+.+.|++|
T Consensus 101 ~~---~~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 101 GI---DNSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp TH---HCBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred cc---cccccccccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 21 123456777773222222 0256789999988741 2457889999999
Q ss_pred cEEEEEecC
Q psy10573 152 GRMVMPVGE 160 (206)
Q Consensus 152 G~l~~~~~~ 160 (206)
|++.+.++.
T Consensus 177 G~~~~Ilp~ 185 (311)
T PF02384_consen 177 GRAAIILPN 185 (311)
T ss_dssp EEEEEEEEH
T ss_pred cceeEEecc
Confidence 998887775
No 176
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.96 E-value=6.4e-09 Score=81.30 Aligned_cols=110 Identities=26% Similarity=0.263 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC-C
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG-S 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~ 127 (206)
....+||-||.|.|..+..+.+.. +..+++.+|+++.+++.|++.+...... ...++++++.+|......- ..+ +
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~--~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKE--TQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHT--SSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHh--ccCCc
Confidence 468999999999999999998654 3459999999999999999988752211 2357899999994332221 223 7
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+.+..- ....+.+.+.|+|+|++++...+..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 8999986553 3467899999999999998875544
No 177
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.96 E-value=1.1e-08 Score=79.90 Aligned_cols=93 Identities=25% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+|+|+|+|+|.++..+++.. |+.+++..|. |.+++.+++ . .+++++.+|+. .++ |.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~---------~rv~~~~gd~f--~~~--P~-- 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--A---------DRVEFVPGDFF--DPL--PV-- 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--T---------TTEEEEES-TT--TCC--SS--
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--c---------cccccccccHH--hhh--cc--
Confidence 4566799999999999999999888 8889999997 778888877 1 58999999954 334 45
Q ss_pred eeEEEecCChHH--------HHHHHHhcccCC--cEEEEEec
Q psy10573 128 TRVIQSCWTKEE--------YNSWLLDQLVPG--GRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~--------~~~~~~~~L~~g--G~l~~~~~ 159 (206)
+|+++....+|. +++++.+.|+|| |+|++.-.
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 799999888764 779999999998 99988743
No 178
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.96 E-value=2.4e-08 Score=75.44 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHHHHHHhh-ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 36 IHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 36 ~~~~~~~~l~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+.+..-+. -.+.+|.+||.+|+++|+...+++...++.+.||++|.|+......-+.+.. .+|+--+.+|
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~D 130 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILED 130 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeecc
Confidence 4455544443 2368999999999999999999999998899999999999765555444333 3688888888
Q ss_pred cccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEec
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
......|..--+.+|+|+++-.-+ -+..++...||+||.+++..-
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 544444432234889999985543 255777889999999988764
No 179
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.1e-08 Score=85.79 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=88.4
Q ss_pred CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
..+...+.|++...+.+ .++.++||+-||.|.++..+++... +|+|+|+++++++.|+++++.++ ..|++
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~ 344 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANG-----IDNVE 344 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcC-----CCcEE
Confidence 34556666666555444 4678999999999999999997553 99999999999999999999844 45799
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH----HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE----EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+.++......-......+|+|+.+++-. .+++. ...++|..++++++...+
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~-l~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQ-LAKLKPKRIVYVSCNPAT 400 (432)
T ss_pred EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHH-HHhcCCCcEEEEeCCHHH
Confidence 99998333222101234679999998853 33333 344578888888877655
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.95 E-value=4e-09 Score=84.02 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.+...+++.+. +.++..+||++||.|+++..+++..++.++|+|+|.++.+++.+++++.. ..++.++.+
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 567888888886 67889999999999999999999886578999999999999999988753 247999999
Q ss_pred ccccccccCCCCC--CeeEEEecCC
Q psy10573 114 FWLRHLLLTNPHG--STRVIQSCWT 136 (206)
Q Consensus 114 d~~~~~~~~~~~~--~~D~i~~~~~ 136 (206)
|+.+.... ++++ ++|.|+++.+
T Consensus 76 ~f~~l~~~-l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 76 NFSNLKEV-LAEGLGKVDGILLDLG 99 (296)
T ss_pred CHHHHHHH-HHcCCCccCEEEECCC
Confidence 94433222 1222 6899988765
No 181
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=1.1e-08 Score=77.27 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=72.5
Q ss_pred ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 46 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.+.++..|+|+.||.|.++..+++.. +...|+++|++|.+++.+++++..++.+ .++..+.+|..+. .+.
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~----~~~ 167 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREF----LPE 167 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG-------T
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHh----cCc
Confidence 347889999999999999999998754 5568999999999999999999986643 5688999994322 136
Q ss_pred CCeeEEEecCCh--HHHHHHHHhcccCCcEEE
Q psy10573 126 GSTRVIQSCWTK--EEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 126 ~~~D~i~~~~~~--~~~~~~~~~~L~~gG~l~ 155 (206)
+.+|.|+++.+. ..+++.+..++++||++-
T Consensus 168 ~~~drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 778999998773 457788999999998763
No 182
>KOG1663|consensus
Probab=98.93 E-value=3.4e-08 Score=74.73 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|.....+...+. +..++++||+|.=+|+.+..++..+.+.++++++|++++..+.+.......+. ...++++.+
T Consensus 59 ~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g 132 (237)
T KOG1663|consen 59 PDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEG 132 (237)
T ss_pred hHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeec
Confidence 433333333343 56789999999999999999999888889999999999999999777665443 257899998
Q ss_pred ccccccc---cCCCCCCeeEEEecCChHH---HHHHHHhcccCCcEEEEEe
Q psy10573 114 FWLRHLL---LTNPHGSTRVIQSCWTKEE---YNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 114 d~~~~~~---~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~ 158 (206)
+..+... -+...++||.++++..-.. +.+++.+++++||+|++--
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 8333211 1236789999999988654 5588999999999998764
No 183
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.92 E-value=4.7e-09 Score=79.43 Aligned_cols=108 Identities=24% Similarity=0.163 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~ 126 (206)
.+.|.+|||-|.|-|+.++..++... .+|+.+|.++.+++.|+-|--... .....+.++.+|..+. ..| +++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~--~D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDF--DDE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcC--Ccc
Confidence 46699999999999999999987542 289999999999999875543211 1223689999994333 335 999
Q ss_pred CeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|+.+++- ..+.++++++|+|||+++=.+.++.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 99999999883 3356899999999999998888776
No 184
>KOG1499|consensus
Probab=98.88 E-value=1.5e-08 Score=81.20 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+-.++.|||+|||+|.++...++... .+|+++|.|.-+ +.|.+....++.+ ..++++.+. .+...+ |-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gk-vEdi~L--P~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGK-VEDIEL--PVEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecc-eEEEec--Cccc
Confidence 45789999999999999999987653 499999987754 8888888875543 358888888 333334 7788
Q ss_pred eeEEEecCChHHHH---------HHHHhcccCCcEEEE
Q psy10573 128 TRVIQSCWTKEEYN---------SWLLDQLVPGGRMVM 156 (206)
Q Consensus 128 ~D~i~~~~~~~~~~---------~~~~~~L~~gG~l~~ 156 (206)
+|+|++-+.-..++ -.=.+.|+|||.++=
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 89999977743322 233568999998753
No 185
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.4e-08 Score=79.19 Aligned_cols=109 Identities=26% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
..+|.+|||++++.|.=+.+++..... +..|+++|.++..++..++++.+ .+..++..+..|....... .+.+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-----lG~~nv~~~~~d~~~~~~~-~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-----LGVRNVIVVNKDARRLAEL-LPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-----cCCCceEEEeccccccccc-cccc
Confidence 789999999999999999999988754 34569999999999999999998 4456777777772211111 1233
Q ss_pred -CeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 -STRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 -~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.||.|++++++ ..+++...+.|||||+++.++++..
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 58999999885 1266888999999999999999866
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.87 E-value=5.3e-08 Score=80.71 Aligned_cols=112 Identities=16% Similarity=0.060 Sum_probs=80.8
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+...+.+.+.. ..++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++..++ ..++.+..+|.
T Consensus 44 l~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da 116 (382)
T PRK04338 44 ISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDA 116 (382)
T ss_pred HHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhH
Confidence 34444444431 11356899999999999999987653 3489999999999999999998744 34567888884
Q ss_pred ccccccCCCCCCeeEEEecCC--hHHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..... ..+.||+|++++. ...+++.+...+++||+++++
T Consensus 117 ~~~l~---~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 117 NALLH---EERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHh---hcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 22111 0345799999864 234667777888999999988
No 187
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.86 E-value=3.6e-08 Score=73.08 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=69.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 126 (206)
...+.+|||+|||+|..+..++... ...+|+..|.++ .++.++.+++.+.. ....++.+...||.+.... .+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCcccccccccc
Confidence 4678899999999999999988764 345999999999 99999999887431 1235688888886543210 02456
Q ss_pred CeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.||+|+....+ +.+++.+.++|+++|.+++.....
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 78999987664 447788899999998876665443
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.82 E-value=5.6e-08 Score=75.16 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~ 128 (206)
...++||||+|.|..+..++..+. +|+++|.|+.|....++ ..++++..+ +.+ .+.+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~w~~------~~~~f 152 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK------------KGFTVLDIDDWQQ------TDFKF 152 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh------------CCCeEEehhhhhc------cCCce
Confidence 346899999999999999998875 89999999988766654 245555544 321 23456
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|.|-..++ .+++.+++.|+|+|++++.+--+
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9999977764 37899999999999998876544
No 189
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=6.6e-08 Score=72.58 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=91.1
Q ss_pred cccccccCccccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 9 FFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 9 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
|.....+..|...+...|+-++-. .-...+.+.. ..+.++..|+|||+..|.++..+++..++.+.|+++|+.|-
T Consensus 7 wl~~~~~D~Y~~~Ak~~gyRSRAa--~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-- 81 (205)
T COG0293 7 WLAEHLRDPYYKKAKKEGYRSRAA--YKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-- 81 (205)
T ss_pred HHHHhhcCHHHHHHhhccccchHH--HHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc--
Confidence 333344666666666666544311 1122333333 34688999999999999999999999988788999999771
Q ss_pred HHHHHhhhccCccccCCCceEEEEccccccccc-----CCCCCCeeEEEecCCh--------HH---------HHHHHHh
Q psy10573 89 ESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-----TNPHGSTRVIQSCWTK--------EE---------YNSWLLD 146 (206)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~~~~D~i~~~~~~--------~~---------~~~~~~~ 146 (206)
...+++.++++|......+ .+....+|+|+++... ++ .++-+..
T Consensus 82 --------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~ 147 (205)
T COG0293 82 --------------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALE 147 (205)
T ss_pred --------------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHH
Confidence 1135688999883222111 1345557999987664 21 3466678
Q ss_pred cccCCcEEEEEecCCCC
Q psy10573 147 QLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 147 ~L~~gG~l~~~~~~~~~ 163 (206)
.|+|||.+++-.+.+..
T Consensus 148 vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 148 VLKPGGSFVAKVFQGED 164 (205)
T ss_pred eeCCCCeEEEEEEeCCC
Confidence 99999999999887653
No 190
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.80 E-value=7.8e-08 Score=83.20 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=72.5
Q ss_pred CccccCcHHHHHHHHHHhhccCC-----CCCeEEEEcccCchHHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHh
Q psy10573 27 YGADISSPHIHAQMLELLKDKIK-----PGARILDIGSGSGYLTACLAYMAG-------PEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDlG~G~G~~~~~l~~~~~-------~~~~v~~iD~s~~~~~~a~~~ 94 (206)
.|+.++.+.+...|++.+..... ...+|||.|||+|.+...++.... ....++++|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 47888899999999988753222 346899999999999998887652 124789999999999999988
Q ss_pred hhccCccccCCCceEEEEcccccccc--cCCCCCCeeEEEecCCh
Q psy10573 95 IDKGNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~~D~i~~~~~~ 137 (206)
+.... ...+.+...|...... ..-..+.||+|+.|+++
T Consensus 83 l~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcC-----CCCceeeecccccccccccccccCcccEEEeCCCc
Confidence 86522 1223444444111100 00012468999998875
No 191
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.77 E-value=8.9e-08 Score=76.41 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..++..|||++++.|+=+..++......+.+++.|+++..+...++++.+ .+..++.....|.....+. .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-----~g~~~v~~~~~D~~~~~~~-~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-----LGVFNVIVINADARKLDPK-KPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-----TT-SSEEEEESHHHHHHHH-HHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-----cCCceEEEEeecccccccc-ccccc
Confidence 68899999999999999999999887678999999999999999999988 4456788887773322111 02335
Q ss_pred eeEEEecCCh----------------------------HHHHHHHHhcc----cCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK----------------------------EEYNSWLLDQL----VPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~----------------------------~~~~~~~~~~L----~~gG~l~~~~~~~~ 162 (206)
||.|+++.++ ..+++.+.+.+ +|||+++.++.+-.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 7999998874 22668889999 99999999998744
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.77 E-value=5.6e-08 Score=83.47 Aligned_cols=106 Identities=21% Similarity=0.146 Sum_probs=83.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.+..+||||||.|.++..++... |...++|+|+....+..+.+.... .+..|+.++..|...... .++++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~-~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILN-DLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHH-hcCccccc
Confidence 45689999999999999999887 778999999999988888777665 234688888877321111 13889999
Q ss_pred EEEecCChH--------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.|+++.+-+ .+++.+.+.|+|||.+.+.+-...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 999987742 377899999999999998877654
No 193
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.77 E-value=5.9e-09 Score=85.65 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=88.6
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCC-CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
++.++++ ..+.....+++.+.+.+.+ +..+||+.||.|.++..+++... +|+|+|+++.+++.|++++..++
T Consensus 169 ~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~--- 242 (352)
T PF05958_consen 169 ISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG--- 242 (352)
T ss_dssp EETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT---
T ss_pred ECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC---
Confidence 3334444 4456666666665544432 23899999999999999998664 99999999999999999999844
Q ss_pred cCCCceEEEEcccccc-------ccc------CCCCCCeeEEEecCChHHHHHHHHhcc-cCCcEEEEEecCCCCCeeEE
Q psy10573 103 LDQGRVQFVAYFWLRH-------LLL------TNPHGSTRVIQSCWTKEEYNSWLLDQL-VPGGRMVMPVGEPFKGQNLT 168 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~-------~~~------~~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~l~~~~~~~~~~~~~~ 168 (206)
..|++|+.++..+. ..+ .+....+|+|+.+++-..+-+.+.+.+ ++.-++++++...+-...+.
T Consensus 243 --i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~ 320 (352)
T PF05958_consen 243 --IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLK 320 (352)
T ss_dssp ----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHH
T ss_pred --CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 46899998762211 011 012346799999988543222222221 34556666655543222222
Q ss_pred EEEecCCCceEEEEEEeeEEeeeccc
Q psy10573 169 IIDKLADGYTIVTTVVRGVRTNPLYR 194 (206)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
.+ .. +|.. ..+....+.|.+.
T Consensus 321 ~L---~~-~y~~-~~v~~~DmFP~T~ 341 (352)
T PF05958_consen 321 IL---KE-GYKL-EKVQPVDMFPQTH 341 (352)
T ss_dssp HH---HC-CEEE-EEEEEE-SSTTSS
T ss_pred HH---hh-cCEE-EEEEEeecCCCCC
Confidence 22 22 4777 7777776666553
No 194
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.76 E-value=2.4e-07 Score=74.04 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. +.++..++|..+|.|+.+..+++..+ .++++|+|.++.++..+++.+... ..++.++.
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~ 75 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIH 75 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEe
Confidence 3678888999887 78889999999999999999998874 489999999999999999988652 24788888
Q ss_pred ccccccccc--CCCCCCeeEEEecCC
Q psy10573 113 YFWLRHLLL--TNPHGSTRVIQSCWT 136 (206)
Q Consensus 113 ~d~~~~~~~--~~~~~~~D~i~~~~~ 136 (206)
+++.+.... .....++|.|+.+.+
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEecc
Confidence 884332111 013356788877644
No 195
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.75 E-value=5.5e-08 Score=73.48 Aligned_cols=101 Identities=23% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
-.+.||.|+|-|+.+..++-.... +|..+|..+..++.|++.+.... ....++.+....+..| ..++||+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P---~~~~YDl 125 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTP---EEGKYDL 125 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG-------TT-EEE
T ss_pred cceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccC---CCCcEeE
Confidence 468999999999999877433222 89999999999999998776411 1224555544332222 3468899
Q ss_pred EEecCChH--------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 131 IQSCWTKE--------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 131 i~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|++.+.+- .++++|...|+|+|+|++--...
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99998863 37799999999999998865443
No 196
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.75 E-value=7.3e-08 Score=70.55 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=61.1
Q ss_pred EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH------HHHHHHhcccCCc
Q psy10573 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLVPGG 152 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG 152 (206)
+|+|+|+++++.|+++...... ....+++++.+| ....++ ++++||+|++...+++ .++++.++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d-~~~lp~--~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGD-AIDLPF--DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEec-hhhCCC--CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe
Confidence 4899999999999877653111 112479999999 455667 8889999999877654 6789999999999
Q ss_pred EEEEEecCCC
Q psy10573 153 RMVMPVGEPF 162 (206)
Q Consensus 153 ~l~~~~~~~~ 162 (206)
.+++..++.+
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9998866643
No 197
>KOG3420|consensus
Probab=98.75 E-value=2.9e-08 Score=69.81 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=77.3
Q ss_pred ccCccccCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 102 (206)
.+..|..++|.+.+.|...+-.-. -.|+.++|+|||.|.++...+- . ....+.|+|+++++++.+..++++..
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeEfE--- 95 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEEFE--- 95 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHHhh---
Confidence 445677788999999988876433 2578999999999999965543 3 33489999999999999999987733
Q ss_pred cCCCceEEEEcccccccccCCCCCCeeEEEecCCh
Q psy10573 103 LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 103 ~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~ 137 (206)
-++++.++|... ..+ ..+.||.++.|+++
T Consensus 96 ---vqidlLqcdild-le~--~~g~fDtaviNppF 124 (185)
T KOG3420|consen 96 ---VQIDLLQCDILD-LEL--KGGIFDTAVINPPF 124 (185)
T ss_pred ---hhhheeeeeccc-hhc--cCCeEeeEEecCCC
Confidence 256888888332 233 56888999999886
No 198
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=5.7e-07 Score=66.62 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=91.1
Q ss_pred cccccccccCc--cccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 18 YRIKSRQIGYG--ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 18 y~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
|....++.+.+ -+.+.-.+.+.+-.++...--.+.++||+.+|||.++..++.+.. .+++.||.+..++...++++
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHH
Confidence 44444444443 222333345555555542114578999999999999999987753 38999999999999999998
Q ss_pred hccCccccCCCceEEEEcccccccccCCC-CCCeeEEEecCChHH-HH----H--H--HHhcccCCcEEEEEecCC
Q psy10573 96 DKGNSELLDQGRVQFVAYFWLRHLLLTNP-HGSTRVIQSCWTKEE-YN----S--W--LLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~D~i~~~~~~~~-~~----~--~--~~~~L~~gG~l~~~~~~~ 161 (206)
...+. ..+.+++..|......- .. .+.||+|+.+++++. +. . . -...|+|+|.+++.....
T Consensus 87 ~~l~~----~~~~~~~~~da~~~L~~-~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 87 KALGL----EGEARVLRNDALRALKQ-LGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhCC----ccceEEEeecHHHHHHh-cCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 87332 25788888883322111 12 224899999999863 11 1 1 235699999999887754
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=5.1e-07 Score=63.50 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred CCCeEEEEcccCch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~-~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
.+.+++|+|||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+...- -...+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~--~y~~a 78 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLE--IYKNA 78 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHH--HHhcC
Confidence 45789999999996 77677653 34999999999998888764 357788884332221 13556
Q ss_pred eEEEecCChHHHHHHHHhccc-CCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~ 162 (206)
|+|++.-+...+...+.++.+ -|.-+++...+..
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 999998887766655555543 4667777766655
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.8e-07 Score=72.94 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=74.9
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||++ ....+...+++... +.++..|||||+|.|.++..+++... +|+++|+++.++...++.+.. .
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~ 75 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------Y 75 (259)
T ss_pred cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------c
Confidence 45655 55778888888887 77799999999999999999998764 899999999999999998753 3
Q ss_pred CceEEEEcccccccccCCCCC-CeeEEEecCCh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHG-STRVIQSCWTK 137 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~-~~D~i~~~~~~ 137 (206)
.+++++.+|+.. ..+ +.. .++.|++|-+.
T Consensus 76 ~n~~vi~~DaLk-~d~--~~l~~~~~vVaNlPY 105 (259)
T COG0030 76 DNLTVINGDALK-FDF--PSLAQPYKVVANLPY 105 (259)
T ss_pred cceEEEeCchhc-Ccc--hhhcCCCEEEEcCCC
Confidence 589999999332 122 221 45888887764
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.69 E-value=1.1e-07 Score=71.21 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=60.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+.. ..+...|-|+|||.+.++..+... -.|+..|+.+ .+-.++.+| .
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva--------------------~n~~Vtacd-i 113 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVA--------------------PNPRVTACD-I 113 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS---------------------SSTTEEES--T
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC----ceEEEeeccC--------------------CCCCEEEec-C
Confidence 5667777763 455689999999999998655322 2799999754 122466788 4
Q ss_pred cccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|+ +++++|+++....+ ..++.++.|+||+||.+.+.-.
T Consensus 114 a~vPL--~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 114 ANVPL--EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp TS-S----TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcC--CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEe
Confidence 56666 89999999887654 5688999999999999988744
No 202
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.68 E-value=5.2e-07 Score=67.33 Aligned_cols=98 Identities=24% Similarity=0.229 Sum_probs=76.7
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+|+|.|.-+..++-.. |..+++.+|....-+...+..... .+..|++++.+...+ .. ..++||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~--~~--~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE--PE--YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH--TT--TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc--cc--cCCCccEEE
Confidence 89999999999999888666 788999999999887777777766 344689999988433 22 577889999
Q ss_pred ecCC--hHHHHHHHHhcccCCcEEEEEecC
Q psy10573 133 SCWT--KEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 133 ~~~~--~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+-+. +..+++.+...+++||.+++.-..
T Consensus 121 aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 121 ARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp EESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred eehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9765 456888999999999999887554
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.67 E-value=2.1e-07 Score=76.85 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=77.9
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+|||+.||+|..++.++...+...+|+++|+++.+++.+++++..++ ..++.++..|....... ....||+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~--~~~~fDv 117 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRY--RNRKFHV 117 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHH--hCCCCCE
Confidence 3689999999999999998764222489999999999999999998743 34688888884332222 2356799
Q ss_pred EEecCCh--HHHHHHHHhcccCCcEEEEEe
Q psy10573 131 IQSCWTK--EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 131 i~~~~~~--~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|..++.- ..+++.+.+.++++|+++++.
T Consensus 118 IdlDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 118 IDIDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEeCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 9998732 257788899999999999884
No 204
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.66 E-value=2.3e-07 Score=78.32 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 51 GARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+..|+|+|||+|-++...++.. +...+||+||-++.+....++....++. ..+|+++.+|..+ ... +..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~-v~l---pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMRE-VEL---PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTT-SCH---SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccC-CCC---CCc
Confidence 5789999999999987765532 2345999999999888777766444221 3579999999322 221 336
Q ss_pred eeEEEecCC--------hHHHHHHHHhcccCCcEEE
Q psy10573 128 TRVIQSCWT--------KEEYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 128 ~D~i~~~~~--------~~~~~~~~~~~L~~gG~l~ 155 (206)
+|+|++-.. .+..+....+.|+|||+++
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 799988432 3456677888999999875
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=3.6e-07 Score=74.03 Aligned_cols=107 Identities=24% Similarity=0.236 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+|..|+|.-||.|.++..+++...+ .|+++|++|++++..++++..|+.+ ..+..+.+|.....+ .-+.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~---~~~~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAP---ELGV 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhh---cccc
Confidence 567999999999999999999986533 4999999999999999999985543 348899999433222 1166
Q ss_pred eeEEEecCCh--HHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 128 TRVIQSCWTK--EEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 128 ~D~i~~~~~~--~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
+|-|+++.+. ++++....+.+++||++-........
T Consensus 257 aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 257 ADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 7999998775 66888899999999999888776653
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.65 E-value=5.4e-07 Score=71.76 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=79.4
Q ss_pred ccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCch----HHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~----~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
.+-..++=.+.....+.+.+... .+..+|+..||++|. +++.+.+..+ ...+|+|+|+|+.+++.|++-.-.
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 33344444455555555544322 234799999999993 3333344322 135899999999999999876311
Q ss_pred cC--------------------------ccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHH
Q psy10573 98 GN--------------------------SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSW 143 (206)
Q Consensus 98 ~~--------------------------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~ 143 (206)
.. ........++|...|.... ++ -+.+.||+|+|...+ ..+++.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK-QW-AVPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC-CC-ccCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 00 0000113467777774331 22 025788999997665 237789
Q ss_pred HHhcccCCcEEEEE
Q psy10573 144 LLDQLVPGGRMVMP 157 (206)
Q Consensus 144 ~~~~L~~gG~l~~~ 157 (206)
+.+.|+|||.+++-
T Consensus 248 l~~~L~pgG~L~lG 261 (287)
T PRK10611 248 FVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHhCCCcEEEEe
Confidence 99999999988664
No 207
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.64 E-value=1.2e-07 Score=68.94 Aligned_cols=77 Identities=18% Similarity=0.075 Sum_probs=53.5
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC-eeEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVI 131 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~i 131 (206)
.|+|+.||.|+.+..+++... +|+++|+++..++.++.+++..+. ..+++++.+|+.+.... +.... +|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~-~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKR-LKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGG-B------SEE
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhh-ccccccccEE
Confidence 689999999999999998763 899999999999999999988432 36899999995443321 12222 6999
Q ss_pred EecCCh
Q psy10573 132 QSCWTK 137 (206)
Q Consensus 132 ~~~~~~ 137 (206)
++++++
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998774
No 208
>KOG2940|consensus
Probab=98.55 E-value=1.5e-07 Score=71.32 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+.-.+.+.+.+..+.-..++|||||.|.....+.... -.+++-+|.|-.+++.++..-.. .-.+....+|
T Consensus 58 ig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp-------~i~~~~~v~D- 127 (325)
T KOG2940|consen 58 IGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDP-------SIETSYFVGD- 127 (325)
T ss_pred HHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCC-------ceEEEEEecc-
Confidence 3444555554444556789999999999999986542 34899999999999999764221 1134555667
Q ss_pred ccccccCCCCCCeeEEEecCChHHH------HHHHHhcccCCcEEEEEecCCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEY------NSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~------~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.+..+| .++++|+|+....+|+. ..+|...|||+|.|+.+..++..
T Consensus 128 EE~Ldf--~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 128 EEFLDF--KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhcccc--cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 666777 99999999998888763 36788899999999999887653
No 209
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-06 Score=64.97 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhc-cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
.+.+.++.-|.. .++++.+||-+|+.+|+...+++...+ .+.+|++|.|+......-..+.+ .+|+--+.+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 345555555542 368999999999999999999999885 78999999999876665555543 357777788
Q ss_pred ccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEEEEEec
Q psy10573 114 FWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 114 d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+.....|..-=+..|+|+.+-.-+. +..++...|++||.+++..-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 84333333111245799998766543 45777888999997766543
No 210
>KOG0820|consensus
Probab=98.54 E-value=8.9e-07 Score=68.70 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=76.8
Q ss_pred ccCcccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 25 IGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
...||++ ..|.+...+++... ++++..|||+|.|||.++..+.+... +|+++|+++.++....++.....
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp---- 104 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTP---- 104 (315)
T ss_pred cccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCC----
Confidence 3456777 44777888888776 89999999999999999999988653 99999999999999999887622
Q ss_pred CCCceEEEEcccccc-cccCCCCCCeeEEEecCCh
Q psy10573 104 DQGRVQFVAYFWLRH-LLLTNPHGSTRVIQSCWTK 137 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~-~~~~~~~~~~D~i~~~~~~ 137 (206)
.....+++.+|+... .++ ||.++.+.+.
T Consensus 105 ~~~kLqV~~gD~lK~d~P~------fd~cVsNlPy 133 (315)
T KOG0820|consen 105 KSGKLQVLHGDFLKTDLPR------FDGCVSNLPY 133 (315)
T ss_pred ccceeeEEecccccCCCcc------cceeeccCCc
Confidence 135789999994332 232 5999987664
No 211
>KOG1500|consensus
Probab=98.53 E-value=6e-07 Score=71.66 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+..|||+|||+|.++...+.... .+||++|.|+ +.+.|++..+.+++ ..+|++|.+. .+...+ +++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~----~~rItVI~GK-iEdieL---PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNL----ADRITVIPGK-IEDIEL---PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCc----cceEEEccCc-cccccC---chhc
Confidence 3578899999999999988877643 3999999765 88899888776432 4689999887 333333 4556
Q ss_pred eEEEecCChHH-----HH---HHHHhcccCCcEEEEEecCCC-----CCeeEEEEEecCCCceEEEEEEeeEEeeecccc
Q psy10573 129 RVIQSCWTKEE-----YN---SWLLDQLVPGGRMVMPVGEPF-----KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195 (206)
Q Consensus 129 D~i~~~~~~~~-----~~---~~~~~~L~~gG~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
|+||+.+.-.- ++ -..++.|+|.|.++-+..... +++...... .....|.+ ...+++...|+.+.
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~-nkAnFWyQ-q~fyGVdLt~L~g~ 322 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQF-NKANFWYQ-QNFYGVDLTPLYGS 322 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHH-hhhhhhhh-hccccccchhhhhh
Confidence 99999766321 22 234689999998764433211 000000000 01234566 67777777777655
Q ss_pred c
Q psy10573 196 R 196 (206)
Q Consensus 196 ~ 196 (206)
.
T Consensus 323 a 323 (517)
T KOG1500|consen 323 A 323 (517)
T ss_pred h
Confidence 3
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.51 E-value=1.8e-06 Score=68.30 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=78.8
Q ss_pred Ccccc-CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCC
Q psy10573 27 YGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (206)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~ 105 (206)
.||++ ..+.+...+++.+. +.++..|||+|+|.|.++..+++.. .+++++|+++...+..++.+.. .
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~ 75 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------N 75 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------C
T ss_pred CCcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------c
Confidence 45555 56889999999997 6789999999999999999999876 3999999999999999987752 3
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCChH---HHHHHHHh
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE---EYNSWLLD 146 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~ 146 (206)
++++++.+|...........+....|+.+.+.. .++.++..
T Consensus 76 ~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 76 PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred ccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 689999999433222200123446777776652 24444444
No 213
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.50 E-value=1.1e-06 Score=66.35 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred CCCeEEEEcccCch----HHHHHHHHhC---C-CceEEEEeCCHHHHHHHHHhhhc-cCcc---------------c---
Q psy10573 50 PGARILDIGSGSGY----LTACLAYMAG---P-EGRVYGVEHVMELAESSIKNIDK-GNSE---------------L--- 102 (206)
Q Consensus 50 ~~~~vLDlG~G~G~----~~~~l~~~~~---~-~~~v~~iD~s~~~~~~a~~~~~~-~~~~---------------~--- 102 (206)
+..+|+.+||++|. +++.+..... + ..+|+|+|+|+.+++.|++-.-. .... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 3333333211 1 46899999999999998764421 0000 0
Q ss_pred ----cCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEec
Q psy10573 103 ----LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 103 ----~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....++|...|..+ ... +.+.||+|+|-.++ ..+++.+.+.|+|||.|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~--~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDP--PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC-CCc--ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 011356777777444 222 46788999998886 3477999999999999987533
No 214
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=7.5e-06 Score=64.71 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. +.++...+|..-|.|+.+..++..+++.++++++|.++.+++.|++.+.... .+++++.
T Consensus 8 ipVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~ 79 (314)
T COG0275 8 IPVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVH 79 (314)
T ss_pred cchHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEe
Confidence 3678888999998 8899999999999999999999999777899999999999999999986522 5788888
Q ss_pred ccccccccc--CCCCCCeeEEEec
Q psy10573 113 YFWLRHLLL--TNPHGSTRVIQSC 134 (206)
Q Consensus 113 ~d~~~~~~~--~~~~~~~D~i~~~ 134 (206)
.++.+.... ...-+++|-|+.+
T Consensus 80 ~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 80 GNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEe
Confidence 873221110 1133466766554
No 215
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.45 E-value=4e-06 Score=67.73 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+...+||-+|.|.|--.+.+.+.- ...+++-+|.+|.+++.++++. +..+-.....++++++..|..+-..- ..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AAD 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcc
Confidence 455789999999999999998753 2559999999999999999443 33222224568899999993322222 344
Q ss_pred CeeEEEecCChHH-----------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKEE-----------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.||+||++..-+. +-..+.+.|+++|++++...++.
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 6799999766432 33566788999999998877654
No 216
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.44 E-value=6.9e-06 Score=73.47 Aligned_cols=124 Identities=22% Similarity=0.160 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHhhccC-CCCCeEEEEcccCchHHHHHHHHhC-------------------------------------
Q psy10573 32 SSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAG------------------------------------- 73 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~------------------------------------- 73 (206)
..+.+.+.++.... . .++..++|.+||+|++.+..+....
T Consensus 173 l~etlAaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 173 LKENLAAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CcHHHHHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34556666665443 4 5678999999999999988765310
Q ss_pred ----CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChH----------H
Q psy10573 74 ----PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE----------E 139 (206)
Q Consensus 74 ----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~----------~ 139 (206)
...+++|+|+++.+++.|++++...+.+ ..+++..+|+.+.... ...+++|+|++|++.- .
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~----~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~ 325 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVA----ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIA 325 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHH
Confidence 1236899999999999999999885432 4588999994332111 1345789999998851 1
Q ss_pred HHHHH---HhcccCCcEEEEEecCCC
Q psy10573 140 YNSWL---LDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 140 ~~~~~---~~~L~~gG~l~~~~~~~~ 162 (206)
+...+ .+...+|+.+++.+....
T Consensus 326 lY~~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 326 LYSQLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 22222 333348888877776543
No 217
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.44 E-value=1.2e-06 Score=67.49 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
..+..+||+|||+|.++..+++.. ..+++++|+++.++.. .+++..... ....|++. .++.+ ... .-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~---~~~~ni~~--~~~~~-~~~--d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKV---LERTNIRY--VTPAD-IFP--DFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeE---eecCCccc--CCHhH-cCC--Ccee
Confidence 467899999999999999998862 2489999999977665 322211000 01122221 11111 111 1135
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+|++++.... ++..+.+.|++ |.+++-
T Consensus 144 ~DvsfiS~~~--~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISLIS--ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeehHh--HHHHHHHHhCc-CeEEEE
Confidence 6877765443 67788899999 766544
No 218
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.43 E-value=2.1e-06 Score=64.06 Aligned_cols=97 Identities=24% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc---ccc-C-CC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH---LLL-T-NP 124 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~-~~ 124 (206)
++.++||+||++|+++..+.+..++.++++++|+.+. . ..+++.++++|..+. ..+ . ++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~----------~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D----------PLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G----------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c----------cccceeeeecccchhhHHHhhhhhcc
Confidence 3489999999999999999987755679999999875 0 013455555552111 000 0 12
Q ss_pred --CCCeeEEEecCCh-----------H------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 125 --HGSTRVIQSCWTK-----------E------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 125 --~~~~D~i~~~~~~-----------~------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+.+|+|+++... . ..+.-+.+.|++||.+++-+....
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 2688999998832 1 122455677999999999887754
No 219
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.43 E-value=4.7e-06 Score=67.41 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=78.0
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE--
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-- 110 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~-- 110 (206)
+.......+...+.++..++|+|||+|.-+..+++.+. ....++.+|+|.+.++.+.+.+.. ...+.+.+
T Consensus 62 iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-----~~~p~l~v~~ 136 (319)
T TIGR03439 62 ILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-----GNFSHVRCAG 136 (319)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-----ccCCCeEEEE
Confidence 34444444444567888999999999999888876653 235789999999999999998872 12345555
Q ss_pred EEcccccccccCCC----CCCeeEEEecC------Ch---HHHHHHHHh-cccCCcEEEEEecC
Q psy10573 111 VAYFWLRHLLLTNP----HGSTRVIQSCW------TK---EEYNSWLLD-QLVPGGRMVMPVGE 160 (206)
Q Consensus 111 ~~~d~~~~~~~~~~----~~~~D~i~~~~------~~---~~~~~~~~~-~L~~gG~l~~~~~~ 160 (206)
+.+|+.....+ ++ .+...+++.-. .. ..+++.+.+ .|+|||.+++-+-.
T Consensus 137 l~gdy~~~l~~-l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 137 LLGTYDDGLAW-LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred EEecHHHHHhh-cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 67774332111 01 12335554422 22 236788888 99999999886553
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.43 E-value=4.7e-06 Score=63.30 Aligned_cols=122 Identities=22% Similarity=0.302 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC--cc--ccCCCce
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN--SE--LLDQGRV 108 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~--~~~~~~i 108 (206)
.+.....+++.+. +.++...+|||||.|.....++...+ -.+.+|||+.+...+.|+....... .. .....++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4556666777776 78899999999999999988876653 2269999999998888776554311 00 0123578
Q ss_pred EEEEcccccccccCCCCCCeeEEEecCCh--HH---HHHHHHhcccCCcEEEEE
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWTK--EE---YNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--~~---~~~~~~~~L~~gG~l~~~ 157 (206)
++..+|+.+......-=...|+|+++..+ +. -+.+....||+|.+++..
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 88888843221100000223999997654 12 224555677888877654
No 221
>KOG1596|consensus
Probab=98.42 E-value=1.2e-06 Score=66.88 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=77.2
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+++|+.+||-+|+++|+....+....+|.+-||++|.|...-...-.-... .+|+--|..|..-...|...=+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeeee
Confidence 479999999999999999999999999999999999988653333322211 2566666677433333433345
Q ss_pred CeeEEEecCChHH----HHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEE----YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~----~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..|+|+++.+-+. +.-+....|++||-++++.-.
T Consensus 226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 7899999876543 223556789999999988553
No 222
>KOG3115|consensus
Probab=98.41 E-value=2.1e-06 Score=63.84 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=94.5
Q ss_pred ccccccccccc-cCccccccccccCccccCcH-HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEE
Q psy10573 4 VDRKNFFTRVV-NEPYRIKSRQIGYGADISSP-HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81 (206)
Q Consensus 4 ~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i 81 (206)
+|.++|+.... +..+.|+.++++....-... ..+...... ....-.+.|||||-|.+...++..+ |...+.|.
T Consensus 16 ~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~----~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGm 90 (249)
T KOG3115|consen 16 LPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA----LNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGM 90 (249)
T ss_pred CcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh----ccccceEEeeccCccchhhhccccC-ccceeeee
Confidence 45666766555 88889999988866443222 122222222 2344678999999999999999887 77799999
Q ss_pred eCCHHHHHHHHHhhhcc--CccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HHHHHHHH
Q psy10573 82 EHVMELAESSIKNIDKG--NSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EEYNSWLL 145 (206)
Q Consensus 82 D~s~~~~~~a~~~~~~~--~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~~~~~~~ 145 (206)
||--.+.+..+++.... .......+|+.+.+.+.....+-.+..+..+-.+...+- .+++.+..
T Consensus 91 EIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eya 170 (249)
T KOG3115|consen 91 EIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYA 170 (249)
T ss_pred hhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHH
Confidence 99888888877777641 111122567888887733333311133333322222221 23556677
Q ss_pred hcccCCcEEEEEec
Q psy10573 146 DQLVPGGRMVMPVG 159 (206)
Q Consensus 146 ~~L~~gG~l~~~~~ 159 (206)
-+|++||.++..+-
T Consensus 171 y~l~~gg~~ytitD 184 (249)
T KOG3115|consen 171 YVLREGGILYTITD 184 (249)
T ss_pred hhhhcCceEEEEee
Confidence 78999999987764
No 223
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.41 E-value=6.2e-06 Score=64.96 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCeEEEEcccCc----hHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhc-----cCccc---------c-----
Q psy10573 51 GARILDIGSGSG----YLTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDK-----GNSEL---------L----- 103 (206)
Q Consensus 51 ~~~vLDlG~G~G----~~~~~l~~~~~----~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~---------~----- 103 (206)
..+|+-+||+|| ..++.+.+..+ ...+|+++|+|..+++.|+.-.-. .+... .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 679999999999 34444455442 257999999999999998754322 01000 0
Q ss_pred -----CCCceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEE
Q psy10573 104 -----DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 104 -----~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~ 157 (206)
....|.|...|.....+ ..+.||+|+|-.++ ..+++.+...|+|||.+++=
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01234555555222221 24568999997775 45889999999999998764
No 224
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.40 E-value=4e-06 Score=67.15 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 112 (206)
.|.+...+++.|. ..++...+|..-|.|+++..+++..+ .++++++|.++.+++.+++++... ..++.++.
T Consensus 5 ~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~ 75 (310)
T PF01795_consen 5 IPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIH 75 (310)
T ss_dssp --TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEE
T ss_pred ecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEe
Confidence 3667888999997 78899999999999999999998884 489999999999999999888642 35788998
Q ss_pred ccccccccc--CC-CCCCeeEEEecCC
Q psy10573 113 YFWLRHLLL--TN-PHGSTRVIQSCWT 136 (206)
Q Consensus 113 ~d~~~~~~~--~~-~~~~~D~i~~~~~ 136 (206)
+++.+...+ .. .-..+|-|+.+.+
T Consensus 76 ~~F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 76 GNFSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp S-GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred ccHHHHHHHHHHccCCCccCEEEEccc
Confidence 884332111 01 2346788877644
No 225
>KOG2187|consensus
Probab=98.38 E-value=2.8e-06 Score=71.37 Aligned_cols=115 Identities=19% Similarity=0.093 Sum_probs=75.7
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
++.-+-+++. +..+..++|+.||||.++..+++... +|+|||++++++..|++++.. ++..|.+|+.+-.
T Consensus 371 Lys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~-----NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 371 LYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQI-----NGISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchh-----cCccceeeeecch
Confidence 4444455554 67889999999999999999998664 999999999999999999988 4567999999831
Q ss_pred ccccc--cCCCCCCee-EEEecCC---hHHHHHHHHhccc-CCcEEEEEecC
Q psy10573 116 LRHLL--LTNPHGSTR-VIQSCWT---KEEYNSWLLDQLV-PGGRMVMPVGE 160 (206)
Q Consensus 116 ~~~~~--~~~~~~~~D-~i~~~~~---~~~~~~~~~~~L~-~gG~l~~~~~~ 160 (206)
.+..+ +...-++-+ +++++++ +|..+-+..+..+ +--.+++++..
T Consensus 441 E~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred hhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCH
Confidence 21111 100112225 5566655 4443333344444 55555555443
No 226
>KOG1122|consensus
Probab=98.35 E-value=5.5e-06 Score=68.00 Aligned_cols=107 Identities=20% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 125 (206)
.+++.+|||.++..|.=+.+++......+.|++.|.+...+...++++.+ .+..+.-+...|..+. ..+ +.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~--~~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEF--PG 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCccccccccc--Cc
Confidence 57899999999999999999988877788999999999999999999987 4455666666662221 223 44
Q ss_pred CCeeEEEecCCh----------------------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 126 GSTRVIQSCWTK----------------------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 126 ~~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||-|..++++ .+++.....++++||+|+.++++..
T Consensus 312 -~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 312 -SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred -ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 89999998775 1255677889999999999999865
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.3e-05 Score=64.20 Aligned_cols=121 Identities=22% Similarity=0.180 Sum_probs=84.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---C----------------------------Cc----
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---P----------------------------EG---- 76 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~----------------------------~~---- 76 (206)
....+.+.|+.... ..++..++|-=||+|++.+..+-... | .+
T Consensus 175 LketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 175 LKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred chHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 33445555555544 67788999999999999988875542 1 11
Q ss_pred ---eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh--------------HH
Q psy10573 77 ---RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------------EE 139 (206)
Q Consensus 77 ---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------------~~ 139 (206)
.++|+|+++.+++-|+.|+...+.. ..|.|.++|.....+ +-+.+|+||+|++. ..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~----d~I~f~~~d~~~l~~---~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVG----DLIEFKQADATDLKE---PLEEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCC----ceEEEEEcchhhCCC---CCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 3789999999999999999985542 568999999432211 11567999999984 12
Q ss_pred HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+.+.+.+.++--+..++++...
T Consensus 326 fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHhcCCceEEEEccHH
Confidence 3355566777667777776553
No 228
>PRK10742 putative methyltransferase; Provisional
Probab=98.29 E-value=5.7e-06 Score=64.06 Aligned_cols=95 Identities=19% Similarity=0.097 Sum_probs=68.1
Q ss_pred HHHHHHhhccCCCCC--eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCc-cccC---CCceEEE
Q psy10573 38 AQMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-ELLD---QGRVQFV 111 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~--~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~---~~~i~~~ 111 (206)
+.+++++. ++++. +|||+.+|+|..+..++.. +++|+++|.++.+....+..+..... .... ..+++++
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 34555554 56776 9999999999999999875 45899999999999998888876211 1111 1468999
Q ss_pred EcccccccccCCCCCCeeEEEecCChHH
Q psy10573 112 AYFWLRHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 112 ~~d~~~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
.+|......- ...+||+|+.++++++
T Consensus 151 ~~da~~~L~~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 151 HASSLTALTD--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred eCcHHHHHhh--CCCCCcEEEECCCCCC
Confidence 9984333221 2236899999999743
No 229
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.27 E-value=1e-06 Score=59.79 Aligned_cols=96 Identities=30% Similarity=0.324 Sum_probs=39.0
Q ss_pred EEEcccCchHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCCCCCCeeEE
Q psy10573 55 LDIGSGSGYLTACLAYMAGPEG--RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTNPHGSTRVI 131 (206)
Q Consensus 55 LDlG~G~G~~~~~l~~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~i 131 (206)
||+|+..|..+..+++...+.. +++++|..+. .+..++.++.. ....+++++.++..+..+ + +.+.+|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~----~~~~~~~~~~g~s~~~l~~~--~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA----GLSDRVEFIQGDSPDFLPSL--PDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------G----GG-BTEEEEES-THHHHHHH--HH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc----CCCCeEEEEEcCcHHHHHHc--CCCCEEEE
Confidence 6899999999998887764443 7999999984 22222222211 112479999999433222 3 35677999
Q ss_pred EecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 132 QSCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 132 ~~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+++.. ...-++.+.+.|+|||++++-
T Consensus 74 ~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99876 223557788899999988763
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=1e-05 Score=61.57 Aligned_cols=100 Identities=23% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+.+++|||+|.|.-+..++-.. |..+++.+|.....+...++...+ .+.+|++++++-..+..+- ... ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~--~~~-~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE--KKQ-YDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc--ccc-CcE
Confidence 6899999999999999988443 777899999998877777776666 3457899998873332220 111 699
Q ss_pred EEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|++-+. +..+.+.+...+++||.+++.-.
T Consensus 139 vtsRAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 139 VTSRAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred EEeehccchHHHHHHHHHhcccCCcchhhhH
Confidence 999765 45677899999999998765544
No 231
>KOG3045|consensus
Probab=98.24 E-value=7.3e-06 Score=63.31 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+++.+.. ......|-|+|||.+.++. .. ++ .|+.+|+.+ .+-+++.+|.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~--~~-kV~SfDL~a--------------------~~~~V~~cDm- 219 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SE--RH-KVHSFDLVA--------------------VNERVIACDM- 219 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---cc--cc-ceeeeeeec--------------------CCCceeeccc-
Confidence 4556666652 2445789999999988765 11 22 889998743 3456777883
Q ss_pred cccccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|. ++++.|+++.+..+ ..++.+++++|++||.+++.-.
T Consensus 220 ~~vPl--~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 220 RNVPL--EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cCCcC--ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence 33666 89999999886554 4577999999999999988644
No 232
>KOG4589|consensus
Probab=98.22 E-value=1.1e-05 Score=59.40 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccc----c-
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLL----L- 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~----~- 121 (206)
++|+.+|||+||.+|.++..+.+..+|.+.|.|||+-.-. ....++++.+ |..+..- +
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHHH
Confidence 5799999999999999999999999899999999974311 1123445554 3211110 0
Q ss_pred CCCCCCeeEEEecCCh--------H---------HHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 122 TNPHGSTRVIQSCWTK--------E---------EYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~--------~---------~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
.+|+-..|+|+++... + ..+--....+.|+|.++.-++.+..
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 1466677998886542 1 1223335667899999999988763
No 233
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.22 E-value=6.1e-05 Score=59.41 Aligned_cols=108 Identities=17% Similarity=0.022 Sum_probs=78.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..-+||||.||.|.....+....+. ..+|...|.++..++..++..++.+++ .-++|.++|+.+...+.--+-..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCC
Confidence 4578999999999999888877642 248888999999999999999885542 23499999944433331012234
Q ss_pred eEEEecCChH---------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTKE---------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~~---------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++++....+ ..+..+..++.|||.++.+...+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 7887766543 24567788999999998876443
No 234
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.13 E-value=2.5e-05 Score=62.31 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=47.1
Q ss_pred CCeEEEEcccCchH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEEEcccccc--cccCCCCC
Q psy10573 51 GARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVAYFWLRH--LLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~G~G~~-~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~~~d~~~~--~~~~~~~~ 126 (206)
..++||||+|.... .+..++.. +.+++|+|+++..++.|+++...+ .+ ..+|+++...-... .....+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e 176 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNE 176 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccc
Confidence 45799999997544 34334433 579999999999999999999985 43 36788876641111 11112456
Q ss_pred CeeEEEecCChHHHH
Q psy10573 127 STRVIQSCWTKEEYN 141 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~ 141 (206)
.||+++|+++++.-.
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 899999999987533
No 235
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.10 E-value=3.2e-05 Score=54.81 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=55.8
Q ss_pred eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCCh---------------HHHH
Q psy10573 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------------EEYN 141 (206)
Q Consensus 77 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------------~~~~ 141 (206)
+|+++|+.+++++.+++++.+.... .+++++..+-.....+ ++.+.+|+++.|.+. -..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 5899999999999999999984432 4799999872222222 244578999988663 1255
Q ss_pred HHHHhcccCCcEEEEEecCCC
Q psy10573 142 SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 142 ~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+.+.+.|+|||++.+.++.+.
T Consensus 76 ~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHhhccCCEEEEEEeCCC
Confidence 888999999999999999765
No 236
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=59.31 Aligned_cols=91 Identities=19% Similarity=0.125 Sum_probs=68.1
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
..+.|+|+|+|.++...++... +|+++|.+|.....+++++.. .+..|+.++.+|.. .-.| +..|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~-~y~f----e~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDAR-DYDF----ENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccc-cccc----ccccee
Confidence 7889999999999998887653 999999999999999998755 44678999999932 2222 233888
Q ss_pred EecCChH--------HHHHHHHhcccCCcEEE
Q psy10573 132 QSCWTKE--------EYNSWLLDQLVPGGRMV 155 (206)
Q Consensus 132 ~~~~~~~--------~~~~~~~~~L~~gG~l~ 155 (206)
+|-..-. .+++.+.+.|+.++.++
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 8743321 24467777788777765
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.06 E-value=2e-05 Score=56.25 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=46.4
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.++|+|||.|.++..+++.. +.++++++|+++.+.+.+++++..++ ..+++++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEee
Confidence 37999999999999988765 66689999999999999999987632 3457777766
No 238
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.00 E-value=0.00013 Score=62.73 Aligned_cols=129 Identities=19% Similarity=0.147 Sum_probs=91.9
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhccCcccc
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELL 103 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 103 (206)
.|+.++...+...+++.+. ..+..+|+|-.||+|++.....+.++. ...++|.|+++.....|+.++--++.+
T Consensus 165 ~GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~-- 240 (489)
T COG0286 165 AGEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE-- 240 (489)
T ss_pred CCccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--
Confidence 3788888888888888887 467789999999999998888777642 367899999999999999998764432
Q ss_pred CCCceEEEEccccccccc--CCCCCCeeEEEecCChH-------------------------------HHHHHHHhcccC
Q psy10573 104 DQGRVQFVAYFWLRHLLL--TNPHGSTRVIQSCWTKE-------------------------------EYNSWLLDQLVP 150 (206)
Q Consensus 104 ~~~~i~~~~~d~~~~~~~--~~~~~~~D~i~~~~~~~-------------------------------~~~~~~~~~L~~ 150 (206)
. ++....+|....... ....+.||.|++++++- ..++.+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 345555551111111 11346689988887752 134778889999
Q ss_pred CcEEEEEecCC
Q psy10573 151 GGRMVMPVGEP 161 (206)
Q Consensus 151 gG~l~~~~~~~ 161 (206)
+|+..+..+.+
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88776666654
No 239
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.00 E-value=4.4e-06 Score=70.17 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=60.4
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEE-----eCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCC
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGV-----EHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHG 126 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~i-----D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~ 126 (206)
.+||+|||+|.++..+..+ .|+.+ |..+..++.|.++- +..+.+- .....+| +++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG------------vpa~~~~~~s~rLPf--p~~ 180 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG------------VPAMIGVLGSQRLPF--PSN 180 (506)
T ss_pred EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC------------cchhhhhhccccccC--Ccc
Confidence 5799999999999999864 34433 34444455554321 2111111 1345778 999
Q ss_pred CeeEEEecCChH-------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKE-------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~-------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+||+|-|..... -++-++.++|+|||.++.+.+...
T Consensus 181 ~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 181 AFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 999997754432 145678999999999999877654
No 240
>KOG1709|consensus
Probab=97.94 E-value=0.00021 Score=53.99 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+.....+++. .+|.+||++|-|-|.....+.+.- |. +=+.||..+++++..+..... ...|+-...+-|
T Consensus 90 iMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~-p~-~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~W 158 (271)
T KOG1709|consen 90 IMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAP-PD-EHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcC-Cc-ceEEEecCHHHHHHHHhcccc------cccceEEEecch
Confidence 3444444443 778999999999999988887653 43 667899999999999876543 224666666666
Q ss_pred ccccccCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEE
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+..+ +++++.||-|+-+.-- .++.+.+-++|||+|.+-..
T Consensus 159 eDvl~-~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 159 EDVLN-TLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred Hhhhc-cccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 55544 4689999999886542 23557889999999988554
No 241
>KOG2730|consensus
Probab=97.94 E-value=2.9e-05 Score=58.64 Aligned_cols=79 Identities=15% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc---ccccCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR---HLLLTNPHG 126 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~ 126 (206)
....|+|.-||-|+.+..++... +.|++||+++.-+..|+.+++..+.+ .+++|+++|+.+ ...+ ...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~~~lq~--~K~ 164 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLASKLKA--DKI 164 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHHHHHhh--hhh
Confidence 66789999999999998888765 38999999999999999999885532 489999999432 2333 444
Q ss_pred CeeEEEecCCh
Q psy10573 127 STRVIQSCWTK 137 (206)
Q Consensus 127 ~~D~i~~~~~~ 137 (206)
.+|+|+..+++
T Consensus 165 ~~~~vf~sppw 175 (263)
T KOG2730|consen 165 KYDCVFLSPPW 175 (263)
T ss_pred eeeeeecCCCC
Confidence 56788876664
No 242
>KOG2352|consensus
Probab=97.90 E-value=0.00019 Score=60.30 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=79.9
Q ss_pred hhccCCCCC-eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC
Q psy10573 44 LKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 44 l~~~~~~~~-~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 122 (206)
+..++.+.. +++.+|||+..++..+.+.+.. .|+.+|+|+..++........ ..+...+...| .....|
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d-~~~l~f- 110 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMD-MDQLVF- 110 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhcccc------CCcceEEEEec-chhccC-
Confidence 333456666 9999999999998888765433 899999999988888765432 13567888888 555667
Q ss_pred CCCCCeeEEEecCChHH----------------HHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEE----------------YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~----------------~~~~~~~~L~~gG~l~~~~~ 159 (206)
++++||+|+.-+.+++ .+.++.+++++||+.+..+.
T Consensus 111 -edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 111 -EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred -CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9999999988666533 34788999999999887776
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.90 E-value=0.00019 Score=56.85 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCeEEEEcccCc-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh-ccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 51 GARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-KGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G-~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
+.+|+=||||.= ..+..+++..+++..++++|+++++.+.+++... ..+ ...++.|+.+|... ... .-..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~-~~~--dl~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLD-VTY--DLKEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGG-G-G--G----
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhc-ccc--ccccC
Confidence 369999999974 4455556555566789999999999999998776 211 13579999999322 111 22456
Q ss_pred eEEEecCCh-------HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 129 RVIQSCWTK-------EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~-------~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|+|+..... ..+++.+.+.++||+.+++-...+
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 999887654 358899999999999988875543
No 244
>KOG3178|consensus
Probab=97.87 E-value=6.3e-05 Score=60.69 Aligned_cols=90 Identities=20% Similarity=0.315 Sum_probs=68.6
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEE
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVI 131 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i 131 (206)
...+|+|.|.|..+..+...+ | ++-+++.+...+..++..+. +.+..+.+|..... |.+ |+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~----P~~--daI 240 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDT----PKG--DAI 240 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceecccccccC----CCc--CeE
Confidence 678999999999999998865 5 68888888877777766552 23677777732222 444 699
Q ss_pred EecCChH--------HHHHHHHhcccCCcEEEEEec
Q psy10573 132 QSCWTKE--------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 132 ~~~~~~~--------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
++.+.++ +++++|++.|+|+|.+++.-.
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 8877764 478999999999999988755
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.84 E-value=0.00026 Score=56.34 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
...+|||+|||+|..+..+....+...+++.+|.|+.+++.++..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 457999999999988877776664445889999999999999887765
No 246
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.84 E-value=4.1e-05 Score=58.98 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCCC--CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----CCCceEEEEccccccccc
Q psy10573 48 IKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQGRVQFVAYFWLRHLLL 121 (206)
Q Consensus 48 ~~~~--~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~ 121 (206)
++++ .+|||..+|.|..+..++.. | ++|+++|.|+.+....+.-+.....+.. ...+++++.+|..+....
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 4555 48999999999999998853 3 5999999999876666554443111100 114799999995544443
Q ss_pred CCCCCCeeEEEecCChHH
Q psy10573 122 TNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~ 139 (206)
++.+||+|+.++++++
T Consensus 148 --~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 --PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --HSS--SEEEE--S---
T ss_pred --cCCCCCEEEECCCCCC
Confidence 6788999999999854
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.83 E-value=0.00054 Score=48.50 Aligned_cols=101 Identities=30% Similarity=0.314 Sum_probs=66.9
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCC-CCeeEE
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPH-GSTRVI 131 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~-~~~D~i 131 (206)
++|+|||+|... .+.........++++|+++.++..++..... .. ...+.+...|... ..++ .. ..+|++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~--~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG----LGLVDFVVADALGGVLPF--EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----CCceEEEEeccccCCCCC--CCCCceeEE
Confidence 999999999977 3333321113788999999988885544321 10 0115677777333 2444 45 478999
Q ss_pred EecCCh-----HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 132 QSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 132 ~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
...... ...+..+.+.++|+|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444432 5677899999999999988877654
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.80 E-value=5.6e-05 Score=59.18 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=78.8
Q ss_pred cCccccccccccCcccc---CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHH-HHHHHHhCCCceEEEEeCCHHHHHH
Q psy10573 15 NEPYRIKSRQIGYGADI---SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAES 90 (206)
Q Consensus 15 ~~~y~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~-~~l~~~~~~~~~v~~iD~s~~~~~~ 90 (206)
..+|.+..+..+.+... ........+.+.+...-..+.++||+|||+-... ..+.+... +|+..|.++.-++.
T Consensus 18 P~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~e 94 (256)
T PF01234_consen 18 PRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREE 94 (256)
T ss_dssp HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHH
T ss_pred HHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHH
Confidence 44455555544333221 1122333344444322235678999999985443 22233332 89999999988887
Q ss_pred HHHhhhccCc-cc------------cC----------CCce-EEEEcccccccccCC---CCCCeeEEEecCChHH----
Q psy10573 91 SIKNIDKGNS-EL------------LD----------QGRV-QFVAYFWLRHLLLTN---PHGSTRVIQSCWTKEE---- 139 (206)
Q Consensus 91 a~~~~~~~~~-~~------------~~----------~~~i-~~~~~d~~~~~~~~~---~~~~~D~i~~~~~~~~---- 139 (206)
.++.+..... ++ .. ...| .++..|+.+..++.- .+..+|+|++...++.
T Consensus 95 l~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d 174 (256)
T PF01234_consen 95 LEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKD 174 (256)
T ss_dssp HHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SS
T ss_pred HHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCC
Confidence 7776654211 10 00 0113 466777555554410 1235999999877643
Q ss_pred ------HHHHHHhcccCCcEEEEEecCC
Q psy10573 140 ------YNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 140 ------~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.++++.++|||||.|++...-.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 5688899999999999876543
No 249
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.77 E-value=0.00051 Score=52.25 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC-eeEEE
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVIQ 132 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~i~ 132 (206)
|.|+||.-|++...|++.. ...+++++|+++..++.|++++...++ ..+++++.+|-.+. + +.+. .|+|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~--l--~~~e~~d~iv 71 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEV--L--KPGEDVDTIV 71 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG------GGG---EEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccc--c--CCCCCCCEEE
Confidence 6899999999999999865 555899999999999999999988443 35799999992221 1 3332 57776
Q ss_pred ecCCh----HHHHHHHHhcccCCcEEEEEecC
Q psy10573 133 SCWTK----EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 133 ~~~~~----~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+.++= -.+++.....++....+++...+
T Consensus 72 IAGMGG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 72 IAGMGGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp EEEE-HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred EecCCHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 65542 23444444455544556655443
No 250
>KOG1331|consensus
Probab=97.77 E-value=5.2e-05 Score=59.46 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEccccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWLR 117 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~~ 117 (206)
+..+.+.. ...+..++|+|||.|-.... .|.+.+.+.|++...+.-++.. +. ....+| .-
T Consensus 35 ~v~qfl~~-~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad-~l 95 (293)
T KOG1331|consen 35 MVRQFLDS-QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRAD-AL 95 (293)
T ss_pred HHHHHHhc-cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhh-hh
Confidence 33344432 45589999999999866331 2667899999988888777642 22 456667 44
Q ss_pred ccccCCCCCCeeEEEecCChHH---------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 118 HLLLTNPHGSTRVIQSCWTKEE---------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 118 ~~~~~~~~~~~D~i~~~~~~~~---------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..++ ++.+||.++.....++ +++++.+.|+|||..++.++...
T Consensus 96 ~~p~--~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 96 KLPF--REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cCCC--CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4666 7889999999888876 55889999999999999888755
No 251
>KOG2198|consensus
Probab=97.71 E-value=0.00045 Score=56.24 Aligned_cols=114 Identities=17% Similarity=0.066 Sum_probs=76.8
Q ss_pred hhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 44 l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
+.-.++|+.+|||+|+..|.-+..+.+.+-. .+.+.+-|.++..+......+.. ...++..+...|......
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~ 223 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPN 223 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccc
Confidence 3333789999999999999999888776531 34788889999887777766643 122344444444111000
Q ss_pred c------CCCCCCeeEEEecCChH-----------------------------HHHHHHHhcccCCcEEEEEecCCC
Q psy10573 121 L------TNPHGSTRVIQSCWTKE-----------------------------EYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 121 ~------~~~~~~~D~i~~~~~~~-----------------------------~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
. ......||-|.++.++. .++....++|++||+++-++.+.+
T Consensus 224 ~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 224 IYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 0 01334679999986641 155677899999999999999866
No 252
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.65 E-value=0.00036 Score=49.90 Aligned_cols=64 Identities=34% Similarity=0.490 Sum_probs=47.7
Q ss_pred CCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+...|+|+|||.|+++..++..+ .+..+|+++|.++...+.+.++....... ...++.++.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccc
Confidence 567899999999999999998733 25679999999999999998887763210 11345555554
No 253
>KOG3987|consensus
Probab=97.63 E-value=2e-05 Score=59.06 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCCee
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGSTR 129 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~D 129 (206)
+.++||+|+|.|..+..++..+. +|++.|.|..+....+++ +..++... +.+ -+-++|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~ynVl~~~ew~~------t~~k~d 171 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYNVLTEIEWLQ------TDVKLD 171 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCceeeehhhhh------cCceee
Confidence 47899999999999999988775 899999999998888764 22222222 221 111339
Q ss_pred EEEecCChH------HHHHHHHhcccC-CcEEEEEecCC
Q psy10573 130 VIQSCWTKE------EYNSWLLDQLVP-GGRMVMPVGEP 161 (206)
Q Consensus 130 ~i~~~~~~~------~~~~~~~~~L~~-gG~l~~~~~~~ 161 (206)
+|.|-..++ .+++.++.+|.| +|++++...-+
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 998865554 377888999998 78887765543
No 254
>KOG2671|consensus
Probab=97.60 E-value=0.00016 Score=58.17 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHH-------HHHhhhccCccccC
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-------SIKNIDKGNSELLD 104 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~-------a~~~~~~~~~~~~~ 104 (206)
..+.+.--+..+.. ++||..|.|--.|||.+....+... +.|+|.||+-.++.. .+.++...+..
T Consensus 192 mDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~--- 263 (421)
T KOG2671|consen 192 MDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS--- 263 (421)
T ss_pred cchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCc---
Confidence 34444444444444 7999999999999999988887754 399999998877663 34444442211
Q ss_pred CCceEEEEcccccccccCCCCCCeeEEEecCCh---------------------------------------HHHHHHHH
Q psy10573 105 QGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------------------------------------EEYNSWLL 145 (206)
Q Consensus 105 ~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------------------------------------~~~~~~~~ 145 (206)
..-+.+..+|..+..-. ....||.|+|+++. ..+++-..
T Consensus 264 ~~fldvl~~D~sn~~~r--sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPLR--SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred chhhheeeecccCcchh--hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 12357777773332222 45677999999883 12456778
Q ss_pred hcccCCcEEEEEecCCC
Q psy10573 146 DQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 146 ~~L~~gG~l~~~~~~~~ 162 (206)
+.|..||++++..+...
T Consensus 342 ~~L~~ggrlv~w~p~~~ 358 (421)
T KOG2671|consen 342 RRLVDGGRLVFWLPTIT 358 (421)
T ss_pred hhhhcCceEEEecCchh
Confidence 89999999999888543
No 255
>KOG1269|consensus
Probab=97.59 E-value=0.00017 Score=59.43 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=79.3
Q ss_pred HHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc
Q psy10573 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL 120 (206)
Q Consensus 41 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 120 (206)
+..+.....++..++|+|||.|....++... ..+.++|++.++..+..+.......... ..-.++..| .-..+
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~----~k~~~~~~~-~~~~~ 173 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD----NKCNFVVAD-FGKMP 173 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh----hhcceehhh-hhcCC
Confidence 3444445678889999999999999988765 4468999999998877776665542211 122235555 44466
Q ss_pred cCCCCCCeeEEEecCCh------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 121 LTNPHGSTRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
| ++++||.+.+.... ....++++++++|||.++...+.
T Consensus 174 f--edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 174 F--EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred C--CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 7 88899988775443 34779999999999999877654
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00048 Score=52.89 Aligned_cols=96 Identities=23% Similarity=0.136 Sum_probs=62.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE-EEEcccccc--cccCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRH--LLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~--~~~~~~~ 125 (206)
.++..+||+|+.||.++..+++... .+||++|..-..+..- ++. .+++. +...|+... ..+ .
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~-------d~rV~~~E~tN~r~l~~~~~--~- 142 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN-------DPRVIVLERTNVRYLTPEDF--T- 142 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHh---Hhc-------CCcEEEEecCChhhCCHHHc--c-
Confidence 5788999999999999999988643 3999999876544433 221 13333 333342211 112 1
Q ss_pred CCeeEEEecCChH---HHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKE---EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~---~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+..|+++++..+- .++..+..++++++.++.-.-
T Consensus 143 ~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 143 EKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred cCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEec
Confidence 2458999888764 466778889999887765543
No 257
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.58 E-value=0.00059 Score=55.39 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+.++..+||+||++|.++..+++.. .+|++||..+- ... +. ..+++.....|.....+ +.+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l-~~~----L~-------~~~~V~h~~~d~fr~~p---~~~~ 270 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPM-AQS----LM-------DTGQVEHLRADGFKFRP---PRKN 270 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhc-CHh----hh-------CCCCEEEEeccCcccCC---CCCC
Confidence 4688999999999999999998854 49999996552 111 11 23678888877222111 1456
Q ss_pred eeEEEecCChH--HHHHHHHhcccCC
Q psy10573 128 TRVIQSCWTKE--EYNSWLLDQLVPG 151 (206)
Q Consensus 128 ~D~i~~~~~~~--~~~~~~~~~L~~g 151 (206)
+|.++++.... .+.+-+.+.|..|
T Consensus 271 vDwvVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 271 VDWLVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred CCEEEEecccCHHHHHHHHHHHHhcC
Confidence 79999987753 3444445555444
No 258
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.54 E-value=0.00046 Score=51.42 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+++|||+|+|+|-.+...++... ..++..|+.+......+-|...++ ..+.+...|... .+..+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g------~~~~~ 143 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG------SPPAF 143 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC------CCcce
Confidence 3578999999999999988876542 378889999988888887776643 357777777321 34456
Q ss_pred eEEEecCChH------HHHHHHHhcccCCcEEEE
Q psy10573 129 RVIQSCWTKE------EYNSWLLDQLVPGGRMVM 156 (206)
Q Consensus 129 D~i~~~~~~~------~~~~~~~~~L~~gG~l~~ 156 (206)
|+++....+. .++. +...|...|..++
T Consensus 144 Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 144 DLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 9998876652 2444 5555555554444
No 259
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.51 E-value=0.0012 Score=54.43 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 126 (206)
.++.+|+-+|||+ |.++..+++..+. .+|+.+|.++..++.|++.... ..+..... +.... ...+..+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~-~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAE-ILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHH-HHHHhCC
Confidence 4445899999997 8888888887753 4999999999999999985432 01111111 10000 0011222
Q ss_pred -CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 -STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 -~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+|+++-.......++.+.+.++++|.+++.-....
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 579999998888788999999999999988766544
No 260
>KOG4058|consensus
Probab=97.50 E-value=0.00086 Score=47.71 Aligned_cols=122 Identities=19% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
...+.++..+. -.+..+.+|+|+|.|......++.. ....+|+|+++..+..++-+.-+.++. ....|.+-|
T Consensus 59 eQv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~----k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCA----KSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcc----cchhhhhhh
Confidence 34444555554 3566799999999999988887653 237799999999999988777664332 456666666
Q ss_pred cccccccCCCCCCeeEEEecC-ChHHHHHHHHhcccCCcEEEEEecCCCCCeeE
Q psy10573 115 WLRHLLLTNPHGSTRVIQSCW-TKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNL 167 (206)
Q Consensus 115 ~~~~~~~~~~~~~~D~i~~~~-~~~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~ 167 (206)
.-+ +.+.+-.+-+|+... .+..+..+++..+..+..++.+-+.-+..+..
T Consensus 131 lwK---~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~w~le 181 (199)
T KOG4058|consen 131 LWK---VDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPTWQLE 181 (199)
T ss_pred hhh---ccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCccchH
Confidence 111 111222223333322 23445577787888899999887776643333
No 261
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.48 E-value=0.0022 Score=50.63 Aligned_cols=118 Identities=24% Similarity=0.248 Sum_probs=70.3
Q ss_pred HHHHHHHhhccC------CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc----cCcc-----
Q psy10573 37 HAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK----GNSE----- 101 (206)
Q Consensus 37 ~~~~~~~l~~~~------~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~----~~~~----- 101 (206)
...+++.|.... ....+||--|||.|+++-.++... -.+.|.|.|--|+-...-.+.. +...
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 444455554432 234789999999999999999864 3899999998775544332221 0000
Q ss_pred --------------------------ccCCCceEEEEcccccccccCCCCCCeeEEEecCC---hH---HHHHHHHhccc
Q psy10573 102 --------------------------LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT---KE---EYNSWLLDQLV 149 (206)
Q Consensus 102 --------------------------~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~---~~---~~~~~~~~~L~ 149 (206)
.....++.+..+|+.+.-.-....+++|+|+...- .+ .+++.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 00122455555553322111011468898866432 22 46689999999
Q ss_pred CCcEEEEE
Q psy10573 150 PGGRMVMP 157 (206)
Q Consensus 150 ~gG~l~~~ 157 (206)
|||..|-.
T Consensus 194 pgG~WIN~ 201 (270)
T PF07942_consen 194 PGGYWINF 201 (270)
T ss_pred cCCEEEec
Confidence 99966544
No 262
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00065 Score=50.58 Aligned_cols=36 Identities=39% Similarity=0.811 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~ 83 (206)
++++..|+|+-.|.|++++.++...++.+.||++-.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p 81 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP 81 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence 589999999999999999999999999999998743
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.38 E-value=0.0022 Score=48.73 Aligned_cols=82 Identities=32% Similarity=0.313 Sum_probs=62.3
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
.+..+.++.|+||--+++.+++.+.. +...+++.|+++..++.|.+++..++. ..++++..+|.. .++ .++.
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl--~~l-~~~d 84 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGL--AVL-ELED 84 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCc--ccc-CccC
Confidence 35667779999999999999999876 666889999999999999999987443 367888888821 222 1233
Q ss_pred CeeEEEecCC
Q psy10573 127 STRVIQSCWT 136 (206)
Q Consensus 127 ~~D~i~~~~~ 136 (206)
.+|+|++.++
T Consensus 85 ~~d~ivIAGM 94 (226)
T COG2384 85 EIDVIVIAGM 94 (226)
T ss_pred CcCEEEEeCC
Confidence 5688877655
No 264
>KOG0024|consensus
Probab=97.31 E-value=0.0029 Score=50.78 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-----ccccccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-----WLRHLLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-----~~~~~~~ 121 (206)
++.+.+||-+|+|+ |-.+..+++.++. .+|..+|+++..++.|++ +.. ..+...... ..+...-
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHh
Confidence 68899999999997 8888888888754 499999999999999998 432 111111111 1110000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+....+|+.+.....+...+.....++.+|.+++..++.+
T Consensus 237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCC
Confidence 12445579999999999988999999999999777766544
No 265
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.31 E-value=0.0054 Score=48.29 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=60.5
Q ss_pred CeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc-cCC--CCC
Q psy10573 52 ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL-LTN--PHG 126 (206)
Q Consensus 52 ~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~--~~~ 126 (206)
...||||||- -..+=.+++...|.++|.-+|.++.++.+++..+..+. ..+..++.+|..+... +.- -.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 5799999993 33444455566689999999999999999999887621 1248999999322111 000 001
Q ss_pred Cee-----EEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STR-----VIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D-----~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
-+| .++....+ ..++..+.+.|.||+.++++..+..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 112 33333333 3477899999999999999987654
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.31 E-value=0.0019 Score=52.59 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-c--cccccccCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-F--WLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d--~~~~~~~~~ 123 (206)
+.|+.+|+-.|+| .|..+..+++..+ .+|+++|.+++-.+.|++.-++ .++.. | ..+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~---- 226 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAV---- 226 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHh----
Confidence 6889999999888 4567777777665 6999999999999999876443 22221 2 11111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+.+|+|+...+ ...++...+.|+++|++++.-..
T Consensus 227 -~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 -KEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -HhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 112699999999 88889999999999999988555
No 267
>KOG1562|consensus
Probab=97.27 E-value=0.0018 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
+...++++-+|.|.|...+..+++. .-.++..+|++..+++..++.+..-... ...+++.+..+|-..... ..+.+.
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~-~~~~~~ 195 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLE-DLKENP 195 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHH-HhccCC
Confidence 4567889999999999998887663 4458899999999999999998862221 334688999999222111 125677
Q ss_pred eeEEEecCCh----------HHHHHHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTK----------EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
||+|+.+..- ..+...+.+.||++|+++....+
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 7999886442 22557889999999999877654
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.23 E-value=0.0059 Score=46.22 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHH-HHHhhhccCccccCCCce
Q psy10573 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~~~~~i 108 (206)
.|.....+.+++-+ -.+..|+|+|.-.|+.+..++.. +++.++|+|+|++-..... +.+. . .-.++|
T Consensus 17 ~P~Dm~~~qeli~~--~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---h----p~~~rI 87 (206)
T PF04989_consen 17 YPQDMVAYQELIWE--LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---H----PMSPRI 87 (206)
T ss_dssp -HHHHHHHHHHHHH--H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------TTE
T ss_pred CHHHHHHHHHHHHH--hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---c----cccCce
Confidence 35444444444431 23679999999999888777653 4567899999995433221 1111 0 113689
Q ss_pred EEEEccccccc---ccC--CCCCCeeEEEecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 109 QFVAYFWLRHL---LLT--NPHGSTRVIQSCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 109 ~~~~~d~~~~~---~~~--~~~~~~D~i~~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
+++++|..+.. ... .......+|+.+.. .-..++.....+++|+++++.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 99999922211 100 11233356666555 122456678899999999875
No 269
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.22 E-value=0.0012 Score=50.18 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceE
Q psy10573 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~ 109 (206)
++..+...+.+...... .+..++||+||-+......-.. -..|+.||+++. .-.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~--------------------~~~ 86 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ--------------------HPG 86 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC--------------------CCC
Confidence 55666666666654211 1236999999986554433222 236899998761 122
Q ss_pred EEEcccccc-cccCCCCCCeeEEEecCChH---------HHHHHHHhcccCCcE-----EEEEecC
Q psy10573 110 FVAYFWLRH-LLLTNPHGSTRVIQSCWTKE---------EYNSWLLDQLVPGGR-----MVMPVGE 160 (206)
Q Consensus 110 ~~~~d~~~~-~~~~~~~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~-----l~~~~~~ 160 (206)
+.+.|+.+. .| ..+.++||+|.+...+. .++..+.+.|+++|. +++++|.
T Consensus 87 I~qqDFm~rplp-~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 87 ILQQDFMERPLP-KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ceeeccccCCCC-CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 344452221 11 12467889998865542 367899999999999 7777664
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.21 E-value=0.0042 Score=48.26 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 116 (206)
...+.+.+...+.+..+|+|||||.--++..+.... +...++++|++..+++.....+...+ .+..+...|..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~ 164 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeee
Confidence 455566666667778999999999988888776443 55699999999999999988877632 35666666732
Q ss_pred cccccCCCCCCeeEEEecCChHH
Q psy10573 117 RHLLLTNPHGSTRVIQSCWTKEE 139 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~~~~ 139 (206)
.. .+....|+...--.++.
T Consensus 165 ~~----~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 165 SD----PPKEPADLALLLKTLPC 183 (251)
T ss_dssp TS----HTTSEESEEEEET-HHH
T ss_pred cc----CCCCCcchhhHHHHHHH
Confidence 21 14556699888666554
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.17 E-value=0.006 Score=50.73 Aligned_cols=106 Identities=18% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
..+.++||.=+|+|.-+...+...+...+|+.-|+++.+++..++++..++.+ ...+.+...|....... ....|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~--~~~~f 122 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYS--RQERF 122 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCH--STT-E
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhh--ccccC
Confidence 44579999999999999888877544458899999999999999999885543 12578888883221112 46677
Q ss_pred eEEEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 129 RVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 129 D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|=.++- ...+++.+.+.++.||.+.++.-
T Consensus 123 D~IDlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 99966533 33577889999999999988754
No 272
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.11 E-value=0.038 Score=42.84 Aligned_cols=104 Identities=17% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.|++||-+|=..-......+ .+...+|+.+|+++..++..++...+.+ .+ ++.+..|+.+..|- --.++|
T Consensus 43 L~gk~il~lGDDDLtSlA~al--~~~~~~I~VvDiDeRll~fI~~~a~~~g-----l~-i~~~~~DlR~~LP~-~~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALAL--TGLPKRITVVDIDERLLDFINRVAEEEG-----LP-IEAVHYDLRDPLPE-ELRGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHH--HT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---T-TTSS-B
T ss_pred ccCCEEEEEcCCcHHHHHHHh--hCCCCeEEEEEcCHHHHHHHHHHHHHcC-----Cc-eEEEEecccccCCH-HHhcCC
Confidence 468999999855433332222 2344599999999999999998887733 23 88888896654442 015789
Q ss_pred eEEEecCCh-----HHHHHHHHhcccCCc-EEEEEecCC
Q psy10573 129 RVIQSCWTK-----EEYNSWLLDQLVPGG-RMVMPVGEP 161 (206)
Q Consensus 129 D~i~~~~~~-----~~~~~~~~~~L~~gG-~l~~~~~~~ 161 (206)
|+++.+++. .-++.+....|+..| ..++.....
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 999999884 236678888888655 555544443
No 273
>KOG3201|consensus
Probab=97.11 E-value=0.00043 Score=49.98 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+.+|+++|.|- |-.+..++... +...|+..|-++..++..++....+... .......+.-+. ...........
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s--~~tsc~vlrw~~-~~aqsq~eq~t 103 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMAS--SLTSCCVLRWLI-WGAQSQQEQHT 103 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccccc--ccceehhhHHHH-hhhHHHHhhCc
Confidence 3467899999995 44444445444 6669999999999999888776553211 111221222221 11111124557
Q ss_pred eeEEEecCCh------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|++...+ ..+.+.+...|+|.|..++..|-..
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 7999997664 2366888999999999777766443
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=96.81 E-value=0.0056 Score=49.03 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+.++... -.+|..|||..+|+|+.+..+.+.. .+.+|+|++++..+.|++++..
T Consensus 197 L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 344444443 4789999999999999988776543 3899999999999999999864
No 275
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.76 E-value=0.0064 Score=46.44 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
..+.+.+++.. -.++..|||.-||+|+.+..+.+.. . +.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~-R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG-R--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC-C--eEEEEeCCHHHHHHhcC
Confidence 44566666555 4789999999999999988776543 3 89999999999998874
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.71 E-value=0.016 Score=44.52 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcc----CCCCCeEEEEcccCchHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCc
Q psy10573 34 PHIHAQMLELLKDK----IKPGARILDIGSGSGYLTACL-AYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGR 107 (206)
Q Consensus 34 ~~~~~~~~~~l~~~----~~~~~~vLDlG~G~G~~~~~l-~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~ 107 (206)
......+.++|..- ..++.++||||.|....--.+ ... =+-+.+|.|+++..+..|+.....+ ++ ...
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l----~~~ 131 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGL----ERA 131 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcch----hhh
Confidence 34455566665421 235568899998864321111 111 1347788999999999999988774 22 133
Q ss_pred eEEEEcccccccccC--CC-CCCeeEEEecCChHHHHHHH
Q psy10573 108 VQFVAYFWLRHLLLT--NP-HGSTRVIQSCWTKEEYNSWL 144 (206)
Q Consensus 108 i~~~~~d~~~~~~~~--~~-~~~~D~i~~~~~~~~~~~~~ 144 (206)
+.+.... ....-|+ +. .+.||.++||+++|.-.+..
T Consensus 132 I~lr~qk-~~~~if~giig~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 132 IRLRRQK-DSDAIFNGIIGKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred eeEEecc-CccccccccccccceeeeEecCCCcchhHHHH
Confidence 5555443 1111111 12 56789999999998755433
No 277
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0027 Score=51.50 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=63.4
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc-cccccCCC-CCCe
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL-RHLLLTNP-HGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~-~~~~ 128 (206)
.++|||+|.|.|..+..+-.....--.++.+|.|+...++..........+ ...+...|+. +-.++ + ...|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-----~td~r~s~vt~dRl~l--p~ad~y 186 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-----KTDWRASDVTEDRLSL--PAADLY 186 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-----cCCCCCCccchhccCC--Ccccee
Confidence 467999999999887776655533336777898887766665444331111 1122222211 11122 2 3345
Q ss_pred eEEEecCCh---------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+++++..-+ ...++.++.++.|||.|+++..+.+
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 777654332 2266889999999999999887755
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.67 E-value=0.023 Score=46.51 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-+|+|. |..+..+++......+++++|.++..++.+++ +.. ...+ .+..+..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~~~~~~~------- 221 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-DDIPEDL------- 221 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-hhhhhcc-------
Confidence 46789999999875 66666666642123479999999988888764 211 1111 1111111
Q ss_pred CeeEEEecCC---hHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+|+.... .+..++...+.|+++|++++.-.
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 2599987665 45567888899999999987643
No 279
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.65 E-value=0.085 Score=41.31 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHh---C-CCceEEEEeCCH-------------------
Q psy10573 31 ISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMA---G-PEGRVYGVEHVM------------------- 85 (206)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~---~-~~~~v~~iD~s~------------------- 85 (206)
|........+...+...+ .-...|+|+||--|..+..+...+ + +..++++.|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 444555555555554433 345789999999998776654332 2 344788886322
Q ss_pred -------HHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH----HHHHHHhcccCCcEE
Q psy10573 86 -------ELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE----YNSWLLDQLVPGGRM 154 (206)
Q Consensus 86 -------~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~l 154 (206)
...+..++++...+ ....++.++.+.+.+..+ ..+.+.+-++.++..+.. .++.++..|.|||++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~g---l~~~~v~~vkG~F~dTLp-~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYG---LLDDNVRFVKGWFPDTLP-DAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTT---TSSTTEEEEES-HHHHCC-C-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcC---CCcccEEEECCcchhhhc-cCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 12344444444322 223689999999665544 235667777777776643 678889999999999
Q ss_pred EEEecCC
Q psy10573 155 VMPVGEP 161 (206)
Q Consensus 155 ~~~~~~~ 161 (206)
++--++.
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9876654
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.55 E-value=0.019 Score=47.07 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~ 123 (206)
..++.+||-.|+|. |..+..+++..+. .+++++|.+++.++.+++.-.. .++. .+..+...
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~--- 231 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLAREMGAD-----------KLVNPQNDDLDHYKA--- 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHcCCc-----------EEecCCcccHHHHhc---
Confidence 34688999889874 7777777776542 2688999999998888763211 1111 11111000
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+|+....-...++...+.|+++|+++..-.
T Consensus 232 ~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 232 EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 123479999887766677888899999999987644
No 281
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.55 E-value=0.0051 Score=42.84 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=63.2
Q ss_pred cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-cccCCCCCCeeEEEecC
Q psy10573 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLLTNPHGSTRVIQSCW 135 (206)
Q Consensus 60 G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~~~~~~~~D~i~~~~ 135 (206)
|.|..+..+++..+ ++++++|.++...+.+++.-.. .++..+ +.+. ... .+...+|+|+...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~-----------~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGAD-----------HVIDYSDDDFVEQIREL-TGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTES-----------EEEETTTSSHHHHHHHH-TTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccc-----------ccccccccccccccccc-cccccceEEEEec
Confidence 45788888888876 6999999999999999864322 122221 1111 111 1345789999988
Q ss_pred ChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 136 TKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 136 ~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.-...++...++++++|.+++.....
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 87788899999999999999886665
No 282
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.032 Score=45.75 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..+|+|.=+|+|.-++..+...+.. +++.-|+||.+++.+++|+..+. ..+...+..| .+..... .+..||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~D-AN~lm~~-~~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNS-----GEDAEVINKD-ANALLHE-LHRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcC-----cccceeecch-HHHHHHh-cCCCccE
Confidence 7899999999999998888776433 88899999999999999998742 2355666666 2211110 2356799
Q ss_pred EEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
|=+++- ...+++...+.++.+|++.++.-
T Consensus 125 IDiDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 125 IDIDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred EecCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 855432 23466888888899998877643
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.35 E-value=0.043 Score=47.47 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-ccccCCCc-----eEEEEcccccc--c
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELLDQGR-----VQFVAYFWLRH--L 119 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~-----i~~~~~d~~~~--~ 119 (206)
.++.+|+-+|+|. |..+...++..|. .|+++|.+++.++.+++.-.... .+...... ..-...+..+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4789999999997 7777888887764 79999999999999887321100 00000000 00000010000 0
Q ss_pred ccCCCC--CCeeEEEecCCh-----HHH-HHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPH--GSTRVIQSCWTK-----EEY-NSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~--~~~D~i~~~~~~-----~~~-~~~~~~~L~~gG~l~~~~~ 159 (206)
.+ .+ ..+|+++..... +.+ .+++.+.++|||.++....
T Consensus 241 ~~--~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LF--AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HH--HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 11 357999987765 235 4899999999999887755
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.33 E-value=0.0076 Score=45.72 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=41.0
Q ss_pred CcHHH-HHHHHHHhhccC--CCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 32 SSPHI-HAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 32 ~~~~~-~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
++|.. ...+.+....+. ..+..+.|-+||+|++...+.-..+ .-..+++.|+++++++.|++|+..
T Consensus 30 ~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 30 AFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp ---HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 45543 333444433333 3446899999999999987753332 234789999999999999999863
No 285
>PRK13699 putative methylase; Provisional
Probab=96.32 E-value=0.017 Score=44.65 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=44.4
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
+.+.+++.. -.+|..|||.-||+|+.+....+.. .+.+|+|+++...+.+.+++..
T Consensus 152 l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 444444443 4688999999999999988776533 3899999999999999998875
No 286
>KOG2793|consensus
Probab=96.24 E-value=0.049 Score=42.53 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=58.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCC-ceEEEEcccccccccC-CCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RVQFVAYFWLRHLLLT-NPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~-~~~~~ 127 (206)
...+||++|+|+|-.++.++...+ ..+...|... .+...+.+...++...+... .+.+...+|.+..... .++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 356799999999977777665443 3666666443 44443333332221111111 3434333433222211 01111
Q ss_pred eeEEEecCC------hHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWT------KEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~------~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+|+|++..+ ++.+...+...|..++++++...-.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 687777655 4557777888888888666554443
No 287
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.18 E-value=0.11 Score=43.75 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=65.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+.+... ..-++.+|+-+|+|. |......++..| ++|+.+|.++.....|+.. .++....+
T Consensus 189 ~~~i~r~t~-~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~------------G~~~~~~~- 252 (413)
T cd00401 189 IDGIKRATD-VMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME------------GYEVMTME- 252 (413)
T ss_pred HHHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc------------CCEEccHH-
Confidence 455555442 346789999999997 777777776654 4899999999887777642 11221111
Q ss_pred ccccccCCCCCCeeEEEecCChHHHHHH-HHhcccCCcEEEEEe
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSW-LLDQLVPGGRMVMPV 158 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~-~~~~L~~gG~l~~~~ 158 (206)
+. . ...|+|+........+.. ..+.+++||+++...
T Consensus 253 -e~--v----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 253 -EA--V----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -HH--H----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 10 1 123999987776666654 488999999887664
No 288
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.08 E-value=0.042 Score=45.29 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .+++++|.++...+.+++.-.. .-+.....++... ... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~i~~~-~~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREFGAT--------HTVNSSGTDPVEAIRAL-TGG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHcCCc--------eEEcCCCcCHHHHHHHH-hCC
Confidence 67889999888874 6677777776542 1589999999888888642111 0011111111111 011 122
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+|+....-...++...+.++++|++++.-.
T Consensus 244 ~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 3579999876655566778889999999987643
No 289
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.0048 Score=44.36 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=37.4
Q ss_pred ccccccCCCCCCeeEEEecCChHH--------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEE--------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
....+| .+++.|+|++...+++ .++.|.+.|||||.+-+.++...
T Consensus 38 s~e~~F--~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 38 SNESMF--EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhccC--CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 445667 8899999999888776 45899999999999999988765
No 290
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.02 E-value=0.056 Score=44.78 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.++...+.+++.-.. .-+.....++.+. ... ..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~--------~~i~~~~~~~~~~i~~~--~~ 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARELGAT--------ATVNAGDPNAVEQVREL--TG 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHHcCCc--------eEeCCCchhHHHHHHHH--hC
Confidence 67888998898874 6677777776542 1689999999988888653211 0001111111111 111 22
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+.+|+++....-...++...+.++++|.++....
T Consensus 258 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 3579999876656677788899999999887643
No 291
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.92 E-value=0.07 Score=43.89 Aligned_cols=97 Identities=20% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 123 (206)
..++.+||-+|+|. |.++..+++..+ .++++++. ++...+.+++.-.. .+.....+..+ ..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~---------~v~~~~~~~~~-~~--- 234 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGAT---------YVNSSKTPVAE-VK--- 234 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCE---------EecCCccchhh-hh---
Confidence 35788999999885 777777877764 47888886 67777766542111 11100011111 00
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+|+....-...+....+.++++|.+++.-.
T Consensus 235 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 235 LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEec
Confidence 123569999988766677888999999999876543
No 292
>KOG1099|consensus
Probab=95.86 E-value=0.036 Score=42.56 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=63.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCC----Cc----eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGP----EG----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-- 118 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 118 (206)
..-.+++|+++..|.++..+.+++.. .+ +|++||+.+.+ ..+.+.-+++|....
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSAST 103 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhH
Confidence 34578999999999999999887632 11 38899986621 124566677772111
Q ss_pred -----cccCCCCCCeeEEEecCCh-----HH------------HHHHHHhcccCCcEEEEEecCCC
Q psy10573 119 -----LLLTNPHGSTRVIQSCWTK-----EE------------YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 119 -----~~~~~~~~~~D~i~~~~~~-----~~------------~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..| ..+..|+|+++... |. .+.-...+|+|||.|+.-.+-+.
T Consensus 104 ae~Ii~hf--ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 104 AEAIIEHF--GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHHHHHHh--CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 124 56677999998663 11 22445678999999988766544
No 293
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.22 Score=38.89 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=84.5
Q ss_pred cccccccccccccCcccc-ccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCC---CceE
Q psy10573 3 RVDRKNFFTRVVNEPYRI-KSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRV 78 (206)
Q Consensus 3 ~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~---~~~v 78 (206)
++|.+.|++...++-|.. .-+|-+|.-+ ....+......-+.. +-.+...+|+|+|+..-++.+...+.+ ..+.
T Consensus 32 tlpP~~FYD~~GS~LFe~I~~LPEYYpTR-tEaaIl~~~a~Eia~-~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ry 109 (321)
T COG4301 32 TLPPKYFYDDRGSELFEQITRLPEYYPTR-TEAAILQARAAEIAS-ITGACTLVELGSGNSTKTRILLDALAHRGSLLRY 109 (321)
T ss_pred CCCCceeecccHHHHHHHHhccccccCch-hHHHHHHHHHHHHHH-hhCcceEEEecCCccHHHHHHHHHhhhcCCccee
Confidence 567777776665444432 2233333222 222233222222221 456889999999999999888776643 2367
Q ss_pred EEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEe-cCC--------hHHHHHHHHhccc
Q psy10573 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQS-CWT--------KEEYNSWLLDQLV 149 (206)
Q Consensus 79 ~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~-~~~--------~~~~~~~~~~~L~ 149 (206)
+.+|++...+....+.+... ...-.+.-+.+|...... .++.++--+++. ... +..++..+...++
T Consensus 110 vpiDv~a~iL~~ta~ai~~~----y~~l~v~~l~~~~~~~La-~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 110 VPIDVSASILRATATAILRE----YPGLEVNALCGDYELALA-ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred eeecccHHHHHHHHHHHHHh----CCCCeEeehhhhHHHHHh-cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCC
Confidence 88999999877655544431 011234555566222111 113333233322 111 2347789999999
Q ss_pred CCcEEEEEecCC
Q psy10573 150 PGGRMVMPVGEP 161 (206)
Q Consensus 150 ~gG~l~~~~~~~ 161 (206)
||-.+++-+-..
T Consensus 185 pGd~~LlGvDl~ 196 (321)
T COG4301 185 PGDYFLLGVDLR 196 (321)
T ss_pred CcceEEEecccc
Confidence 999998765543
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.84 E-value=0.063 Score=44.77 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~ 124 (206)
+.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.... ..+..... ++... ..+ .+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~--------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA--------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc--------EEEcCCcchHHHHHHHHH-cC
Confidence 67788999999987 8888888887642 3699999999988888764211 11111111 11111 111 12
Q ss_pred CCCeeEEEecCC---------------------hHHHHHHHHhcccCCcEEEEEe
Q psy10573 125 HGSTRVIQSCWT---------------------KEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 125 ~~~~D~i~~~~~---------------------~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
...+|+++.... ....++.+.+.++++|.++...
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 335798887542 1235678889999999998774
No 295
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.83 E-value=0.15 Score=41.58 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.+++.-.. .++..... ..+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~Ga~-----------~vi~~~~~-------~~~ 222 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALALGAA-----------SAGGAYDT-------PPE 222 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHhCCc-----------eecccccc-------Ccc
Confidence 67889999999764 666666666654 4789999999888887663221 11110000 112
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++........++...+.|+++|++++.-.
T Consensus 223 ~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAPAGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCCcHHHHHHHHHhhCCCcEEEEEec
Confidence 348766555445567888899999999977643
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.82 E-value=0.029 Score=44.74 Aligned_cols=72 Identities=14% Similarity=-0.000 Sum_probs=48.6
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+.||.|.++..+.... - ..++++|+++.+.+..+.++.. . ++.+|..+.....+ .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~-~~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~~~~~~~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANFPN----------K-LIEGDITKIDEKDF-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-C-EEEEEEeCCHHHHHHHHHhCCC----------C-CccCccccCchhhc-CCCCCEEE
Confidence 68999999999988886542 2 2678899999999998887643 1 33445222111100 23569999
Q ss_pred ecCChH
Q psy10573 133 SCWTKE 138 (206)
Q Consensus 133 ~~~~~~ 138 (206)
..+++.
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 988864
No 297
>KOG0822|consensus
Probab=95.82 E-value=0.054 Score=46.44 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCCC-----CeEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 37 HAQMLELLKDKIKPG-----ARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~-----~~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
.+++.++|.++...+ ..|+-+|+|-|-+.....+. .....++|++|-+|.++...++.-.+ ....++
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-----~W~~~V 423 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-----CWDNRV 423 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-----hhcCee
Confidence 334455555443322 35778899999777555432 33456889999999988887763322 223679
Q ss_pred EEEEcccccccccCCCCCCeeEEEec--------CChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRHLLLTNPHGSTRVIQSC--------WTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~~~~~~~~~~~D~i~~~--------~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+++..|...-. - |..+.|++++- -.-+..++.+.+.|||+|+.+-..++
T Consensus 424 tii~~DMR~w~-a--p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 424 TIISSDMRKWN-A--PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred EEEeccccccC-C--chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 99999932211 1 34666988662 11245678888999999987655443
No 298
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.79 E-value=0.15 Score=41.28 Aligned_cols=100 Identities=23% Similarity=0.164 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
+.++.+||..|+|. |..+..+++..+ .++++++.+++..+.+++. .. ..+-.... +...... ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~-g~--------~~~~~~~~~~~~~~~~-~~~~ 230 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL-GA--------DEVLNSLDDSPKDKKA-AGLG 230 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh-CC--------CEEEcCCCcCHHHHHH-HhcC
Confidence 56788888888763 777788887654 4799999999888777542 11 01100000 1100000 1144
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+.+|+++.........+.+.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEECC
Confidence 5679999876556677888999999999987644
No 299
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.74 E-value=0.059 Score=39.61 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred EcccCchHHHHHHHHhCCCceEEEE--eCCHHHHHHHH---HhhhccCccccCCCceEEEE-ccccccc-ccCCCCCCee
Q psy10573 57 IGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSI---KNIDKGNSELLDQGRVQFVA-YFWLRHL-LLTNPHGSTR 129 (206)
Q Consensus 57 lG~G~G~~~~~l~~~~~~~~~v~~i--D~s~~~~~~a~---~~~~~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~~~~~D 129 (206)
+|=|.=.++..|++..+...+++++ |..++..+... ++++. +....+.++. .|+.... .+.+..+.||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcCC
Confidence 6777778889998887544566655 54444433322 33333 2223333333 2421111 1123567889
Q ss_pred EEEecCCh-------------------HHHHHHHHhcccCCcEEEEEecCCCCCeeEEEEEecCCCceEE
Q psy10573 130 VIQSCWTK-------------------EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 180 (206)
Q Consensus 130 ~i~~~~~~-------------------~~~~~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (206)
.|+.+.+- ..++..+.++|+++|.+.++.........+....-....++..
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 99998762 2355788999999999999988876433333333333344443
No 300
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.71 E-value=0.041 Score=43.21 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCeEEEEcccCchHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHhhhc
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
..+|+|+|+|+|.++..+++.+.. ..+++.||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999999887642 24789999999999888888865
No 301
>PHA01634 hypothetical protein
Probab=95.66 E-value=0.036 Score=38.60 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
-.+.+|+|+|++-|..+++++-... ..|+++|.++...+..++++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhh
Confidence 3578999999999999999986643 3899999999999999988765
No 302
>KOG1501|consensus
Probab=95.62 E-value=0.06 Score=45.25 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=44.9
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..|||||+|+|-++..+++..+. .+|++|.-..+.+.|++....++. ..+|.+|..-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC----ccceeeeccc
Confidence 35899999999999988877644 799999999999999988876432 3567766543
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.61 E-value=0.13 Score=41.45 Aligned_cols=89 Identities=20% Similarity=0.110 Sum_probs=59.5
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++.+++-+|+|. |.++..+++..+. ..+.++|.++..++.+.... ++ |.... ....
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~~--------------~i--~~~~~-----~~~g 200 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGYE--------------VL--DPEKD-----PRRD 200 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhcc--------------cc--Chhhc-----cCCC
Confidence 3567888889885 7787888876642 24667888887766654310 11 10000 1123
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|+....-...++.+.+.++++|++++.-.
T Consensus 201 ~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 201 YRAIYDASGDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCEEEECCCCHHHHHHHHHhhhcCcEEEEEee
Confidence 59999988877777888999999999987644
No 304
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.58 E-value=0.32 Score=35.58 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
....+.+.+.+.+...++.+|+-+||=+-... +.+...+..+++..|++........ + .|+.-
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~~~--------------~-~F~fy 71 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQFGG--------------D-EFVFY 71 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhcCC--------------c-ceEEC
Confidence 34555666666554566789999998654333 3332225568889999875544321 2 33444
Q ss_pred cccccccc--CCCCCCeeEEEecCChH------HHHHHHHhcccCCcEEEEEecCC
Q psy10573 114 FWLRHLLL--TNPHGSTRVIQSCWTKE------EYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 114 d~~~~~~~--~~~~~~~D~i~~~~~~~------~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
|......+ .+ .++||+|++++++- .+...+..++++++.++.+++..
T Consensus 72 D~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 72 DYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 42221111 12 56889999999972 23345555668888888877654
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.56 E-value=0.27 Score=38.16 Aligned_cols=102 Identities=28% Similarity=0.321 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||..|+|+ |..+..+++..+ .++++++.++...+.+++.-.. .-+.....+...... ....+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~-~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGAD--------HVIDYKEEDLEEELR-LTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCc--------eeccCCcCCHHHHHH-HhcCC
Confidence 47789999999986 666666776654 5899999998777776543111 001110111110000 01334
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+|+++....-......+.+.++++|.++.....
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 5799998766545667788899999998876544
No 306
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.55 E-value=0.12 Score=41.04 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~ 124 (206)
..++.+||-.|+|. |..+..+++..+. .+++++|.++...+.+++.-.. .++. .+.... ... ..
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~-~~ 184 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSFGAT-----------ALAEPEVLAERQGGL-QN 184 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc-----------EecCchhhHHHHHHH-hC
Confidence 35788999898875 6677777776542 2488889998888877653211 1111 010000 001 02
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-...++...+.++++|+++....
T Consensus 185 ~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 185 GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEecc
Confidence 23469999877666677888999999999987653
No 307
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.44 E-value=0.39 Score=41.69 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=49.2
Q ss_pred CccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy10573 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
.+..++...+...+.+.+.....|+..+.|..||+|.+.....+... ....++|-|..+.+...++.+..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 35555666666666666653234668999999999998876544321 12368999999999999988754
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.084 Score=43.31 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=55.4
Q ss_pred cccccccccC-ccccCcHHHHHHHHHH--------hhccCCC-CCeEEEEcccCchHHHHHHHHh---CC----CceEEE
Q psy10573 18 YRIKSRQIGY-GADISSPHIHAQMLEL--------LKDKIKP-GARILDIGSGSGYLTACLAYMA---GP----EGRVYG 80 (206)
Q Consensus 18 y~~~~~~~~~-~~~~~~~~~~~~~~~~--------l~~~~~~-~~~vLDlG~G~G~~~~~l~~~~---~~----~~~v~~ 80 (206)
|.....++|. |-+++.|.+...+-+. +.+...| ...++|+|+|.|.++..+++.. .| ..+++.
T Consensus 35 YYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i 114 (370)
T COG1565 35 YYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI 114 (370)
T ss_pred ccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE
Confidence 4444666664 4444667765544333 3332343 4679999999999998887654 12 468899
Q ss_pred EeCCHHHHHHHHHhhhcc
Q psy10573 81 VEHVMELAESSIKNIDKG 98 (206)
Q Consensus 81 iD~s~~~~~~a~~~~~~~ 98 (206)
||+|+.....=++++...
T Consensus 115 iE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 115 IEPSPELRARQKETLKAT 132 (370)
T ss_pred EecCHHHHHHHHHHHhcc
Confidence 999999988888887763
No 309
>KOG1098|consensus
Probab=95.19 E-value=0.018 Score=50.10 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=45.0
Q ss_pred cccccccccCccccCcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
|...+...||-++.++..+. +.+.. ..+.++..|||+||.+|.++..+++.++.++-|+|+|+.|
T Consensus 15 ~Y~lAke~GyrsRsaFKLlQ--ln~ky-~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 15 YYRLAKELGYRSRSAFKLLQ--LNKKY-KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHhchhHHHHHHHHH--HHHHh-ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 44444555555443333222 22222 2368899999999999999999999987777889999876
No 310
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.16 E-value=0.17 Score=41.25 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--ccc-ccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLR-HLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~-~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++.-.. .++... ... ....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga~-----------~~i~~~~~~~~~~~~~- 226 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGAD-----------FVINSGQDDVQEIREL- 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC-----------EEEcCCcchHHHHHHH-
Confidence 57788999888874 666677777654 35 99999998888877543211 111111 000 0011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++....-........+.|+++|++++...
T Consensus 227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 1223579999876666666777889999999987644
No 311
>KOG2798|consensus
Probab=95.11 E-value=0.17 Score=40.71 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHhhccCCC------CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHH
Q psy10573 37 HAQMLELLKDKIKP------GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87 (206)
Q Consensus 37 ~~~~~~~l~~~~~~------~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~ 87 (206)
...+++.|.....+ ..+||--|||.|+++..++... . .+-|-|.|--|
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~M 184 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFM 184 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHH
Confidence 34445555433333 4679999999999999998754 3 33444655544
No 312
>KOG2352|consensus
Probab=95.09 E-value=0.046 Score=46.39 Aligned_cols=108 Identities=17% Similarity=0.074 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc----ccccCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR----HLLLTNP 124 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~ 124 (206)
..+..+|-+|-|.|.+...+...+ +...+++++++|.+++.+..++.... ..+..+...|-.+ ...-.-.
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 345678888999999988887666 55699999999999999999886521 1233344444111 0110113
Q ss_pred CCCeeEEEecCC---------------hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 125 HGSTRVIQSCWT---------------KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 125 ~~~~D~i~~~~~---------------~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+..||+++.+-. ...++..+...|.|.|.+++...+.+
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 456799877522 12355778899999999988876655
No 313
>PLN02740 Alcohol dehydrogenase-like
Probab=94.76 E-value=0.25 Score=41.16 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-c
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-L 119 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~ 119 (206)
.+.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.. .++.. ++.+. .
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEMGIT-----------DFINPKDSDKPVHERIR 262 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHcCCc-----------EEEecccccchHHHHHH
Confidence 367889999999875 7777777776542 2689999999988888652111 12211 11110 1
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.. ..+.+|+++....-...+......++++ |++++...
T Consensus 263 ~~--~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 263 EM--TGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred HH--hCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEcc
Confidence 11 2225799998877666777888888886 88876543
No 314
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.69 E-value=0.25 Score=40.38 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++.-.. .++.. +....... .
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~-~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKSLGAM-----------QTFNSREMSAPQIQSV-L 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCc-----------eEecCcccCHHHHHHH-h
Confidence 56788999888875 6677777776642 1478899888888877542111 11111 10000001 1
Q ss_pred CCCCee-EEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTR-VIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D-~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+| +++....-...+....+.|+++|.+++.-
T Consensus 225 ~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 225 RELRFDQLILETAGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred cCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 223457 77766665667788899999999988764
No 315
>KOG1253|consensus
Probab=94.54 E-value=0.055 Score=45.98 Aligned_cols=107 Identities=14% Similarity=0.015 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC--CCC
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT--NPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~ 125 (206)
..++.+|||.=|++|.-++..++.++....+.+-|.++..++..+++...++.+ ..+.....|+ ....+. ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA-~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDA-NVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchH-HHHHHhccccc
Confidence 456778999999999999988887755558888999999999999998874322 2344555551 111110 023
Q ss_pred CCeeEEEecCC--hHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWT--KEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~--~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..||+|=.++- ...+++.+.+.++.||++++++-
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 56799966532 34577888999999999988754
No 316
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.41 E-value=0.083 Score=35.65 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCC--CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeC
Q psy10573 37 HAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (206)
Q Consensus 37 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~ 83 (206)
.+.++........ +....+|+|||+|-+.-.|....- .=+|+|.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDA 88 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Ccccccc
Confidence 4444555543222 356799999999999877765432 4577775
No 317
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.38 E-value=0.8 Score=38.62 Aligned_cols=90 Identities=13% Similarity=0.021 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
...+.+|+-+|+|. |......++..+ ++|+++|.++.....+... .+.+...+ +. . .
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~------------G~~v~~le--ea--l--~-- 249 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMD------------GFRVMTME--EA--A--K-- 249 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhc------------CCEeCCHH--HH--H--h--
Confidence 35789999999997 766666666554 5899999988654444321 12222111 10 1 1
Q ss_pred CeeEEEecCChHHHHH-HHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNS-WLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~-~~~~~L~~gG~l~~~~~ 159 (206)
..|+++....-..++. .....+++|++++...-
T Consensus 250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1399888776666654 57888999998876543
No 318
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.18 E-value=0.38 Score=39.35 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc-ccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR-HLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .-+.....+... ...+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKEYGAT--------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHcCCc--------eEecCCCCCHHHHHHHH-hCC
Confidence 67788888888774 6677777776643 2688999988877777652110 001110111111 0111 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-......+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEec
Confidence 357999976665556788899999999988653
No 319
>PRK11524 putative methyltransferase; Provisional
Probab=94.16 E-value=0.1 Score=41.75 Aligned_cols=53 Identities=17% Similarity=-0.023 Sum_probs=37.1
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh----------------------HHHHHHHHhcccCCcEEEEEec
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK----------------------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~----------------------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+-+++.+|..+... .++++++|+|+++++. ...+..+.++|+|||.+++...
T Consensus 7 ~~~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 345677888443222 2377888999988763 2356889999999999988643
No 320
>PLN02827 Alcohol dehydrogenase-like
Probab=94.15 E-value=0.37 Score=40.15 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE--cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~--~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+- ..++++|.++...+.+++.-.. .-+.... .++... ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~lGa~--------~~i~~~~~~~~~~~~v~~~-- 259 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTFGVT--------DFINPNDLSEPIQQVIKRM-- 259 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHcCCc--------EEEcccccchHHHHHHHHH--
Confidence 67889999998875 6677777776542 2588899888888877542111 0011110 011110 111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~ 158 (206)
..+.+|+|+....-...+....+.+++| |++++.-
T Consensus 260 ~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 260 TGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred hCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEEC
Confidence 1225799998777665667788899998 9997653
No 321
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.13 E-value=1.5 Score=36.08 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccc-cccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~-~~~~ 122 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++.+.. .. +..... ++... ...
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~- 224 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRY- 224 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHH-
Confidence 678899998887 4 5788888887764 4789999888877777533321 11 111111 11111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....- .....+.+.|+++|+++..-
T Consensus 225 -~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 -FPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEEC
Confidence 12357999976664 46678889999999998653
No 322
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.05 E-value=0.47 Score=38.57 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .-+.....++... ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g~~--------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAGAT--------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhCCc--------EEEcCCcchHHHHHHHH-cCC
Confidence 56788888877653 6666777776542 2688888877776666542110 0011111111110 001 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++........+....+.|+++|+++...
T Consensus 235 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVGFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEc
Confidence 567999876554456788889999999987653
No 323
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.03 E-value=1.3 Score=35.85 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccccccCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~ 123 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++. .. .. +..... ++...... .
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~l-Ga--------~~vi~~~~~~~~~~~~~~-~ 203 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKL-GF--------DVAFNYKTVKSLEETLKK-A 203 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC--------CEEEeccccccHHHHHHH-h
Confidence 678899988884 3 5788888887654 4789999888887777542 11 11 111010 11110000 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-. ......+.|+++|+++...
T Consensus 204 ~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 SPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEec
Confidence 234579999766544 4578889999999998653
No 324
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.90 E-value=0.78 Score=37.97 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE--cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~--~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .+|+++|.+++..+.+++.-.. .-+.... .++... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~Ga~--------~~i~~~~~~~~~~~~v~~~-- 251 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKLGAT--------DCVNPNDYDKPIQEVIVEI-- 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCC--------eEEcccccchhHHHHHHHH--
Confidence 67889999899875 6777777776542 2799999999988888653111 0011110 011110 011
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
..+.+|+++....-...+....+.++++ |+++....
T Consensus 252 ~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 252 TDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred hCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEec
Confidence 1235699998766556677788889886 98876643
No 325
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.80 E-value=0.06 Score=45.93 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.8
Q ss_pred CeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHH----HHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME----LAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~----~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-+|+|..+|.|+++..|... .|+.+...+. .+...-. + .+-=+..|+.+..+. =+.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd---R---------GLIG~yhDWCE~fsT--YPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD---R---------GLIGVYHDWCEAFST--YPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh---c---------ccchhccchhhccCC--CCcc
Confidence 47999999999999998642 3555544442 1111111 0 111112244433232 2566
Q ss_pred eeEEEecCCh---------HHHHHHHHhcccCCcEEEEE
Q psy10573 128 TRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 128 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~ 157 (206)
||+|-++..+ ..++-++.++|+|+|.+++-
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 7988776654 34667899999999999875
No 326
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.74 E-value=0.48 Score=38.46 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=62.0
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.++.+||..|+|. |..+..+++..+ .+++++..+++..+.+++.-.. .-+.....++.....-..+.
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g~~--------~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELGAD--------DTINVGDEDVAARLRELTDG 225 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhCCC--------EEecCcccCHHHHHHHHhCC
Confidence 367888998888764 677777777654 5888888888877777542111 00111111111111000133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-......+.+.|+++|.++...
T Consensus 226 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATGNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 457999986544456677889999999988653
No 327
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.72 E-value=0.66 Score=38.34 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.+++....+.+.+.. -.++.. +....... .
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~~Ga----------~~vi~~~~~~~~~~~--~- 245 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINRLGA----------DSFLVSTDPEKMKAA--I- 245 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHhCCC----------cEEEcCCCHHHHHhh--c-
Confidence 45788888899875 777777777664 4788887776543332222211 011111 10000001 1
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++........++...+.|+++|.++...
T Consensus 246 ~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 246 GTMDYIIDTVSAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeC
Confidence 236999987665556677889999999998764
No 328
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.66 E-value=0.53 Score=38.50 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
+.++.+||-.|+|. |..+..+++..+ . ++++++.++...+.+++.-.. .-+.....++... ... .+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G--~~~v~~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~l~~~-~~ 238 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG--ASKIIVSEPSEARRELAEELGAT--------IVLDPTEVDVVAEVRKL-TG 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC--------EEECCCccCHHHHHHHH-hC
Confidence 56788888888653 566666666653 3 788888888887777542111 0011111111111 111 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+|+++........++.+.+.|+++|.++....
T Consensus 239 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEcc
Confidence 33479999876655566788899999999876543
No 329
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.56 E-value=0.12 Score=41.78 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
+++|+.||-|.++.-+.... - -.+.++|+++.+.+.-+.++. ....+|..+...-.++. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhccc------------ccccccccccccccccc-cceEEE
Confidence 68999999999999887643 1 266899999999888887762 55666632221111244 469999
Q ss_pred ecCCh
Q psy10573 133 SCWTK 137 (206)
Q Consensus 133 ~~~~~ 137 (206)
..+++
T Consensus 67 ggpPC 71 (335)
T PF00145_consen 67 GGPPC 71 (335)
T ss_dssp EE---
T ss_pred eccCC
Confidence 98776
No 330
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.52 E-value=0.99 Score=36.92 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCC
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~ 124 (206)
++++.+||-.|+. .|.++..+++..+- .++++-.+++-.+.+++.-.. .-+.+...|+.+.. .. ..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~-t~ 208 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVREL-TG 208 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHH-cC
Confidence 6789999988744 47788888887653 555555566555566654332 11233333422221 11 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
...+|+|+..-.-+.+ ......|+++|+++.+....
T Consensus 209 g~gvDvv~D~vG~~~~-~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTVGGDTF-AASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECCCHHHH-HHHHHHhccCCEEEEEecCC
Confidence 3357999987776654 45788899999998876544
No 331
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.51 E-value=1 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcccccc-cccCC
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+ |.|..+..+++..+ .++++++.+++..+.+++ +.. .. +.....++... ...
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~-~Ga--------~~vi~~~~~~~~~~v~~~-- 207 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE-LGF--------DAVFNYKTVSLEEALKEA-- 207 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-cCC--------CEEEeCCCccHHHHHHHH--
Confidence 678889988874 34777777887764 478999988888888765 211 11 11111121111 111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.+|+|+....- .......+.|+++|+++..
T Consensus 208 ~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 208 APDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 22457999976554 4567888999999999765
No 332
>KOG3924|consensus
Probab=93.48 E-value=0.28 Score=40.74 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc--cCccc--cCCCceE
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK--GNSEL--LDQGRVQ 109 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~~~--~~~~~i~ 109 (206)
+.....+.+.+. +.++....|+|+|.|.....++...+ ...-.|+|+.....+.+..+... ..+.. .....+.
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 444555666665 78999999999999999998887653 23557777665444333332221 00000 1124567
Q ss_pred EEEcccccccccCCCCCCeeEEEecCChH-----HHHHHHHhcccCCcEEEEEec
Q psy10573 110 FVAYFWLRHLLLTNPHGSTRVIQSCWTKE-----EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 110 ~~~~d~~~~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+.+++........=....++|+++...- .-.+++...+++|-+|+-+-+
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 77777322211111123347888765531 122477788899998876544
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.46 E-value=0.64 Score=38.11 Aligned_cols=101 Identities=19% Similarity=0.086 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+|+-.|+|. |..+..+++..+ .++++++.+++.++.+++.-.. .-+..... ++.+. ..+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~~~~~~~~- 232 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGFGAD--------LTLNPKDKSAREVKKLIKAF- 232 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCc--------eEecCccccHHHHHHHHHhh-
Confidence 67889999999975 777777777664 4789999999888888652111 00100000 11000 001
Q ss_pred CCCCCee----EEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTR----VIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D----~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+...+| +|+....-....+.+.+.|+++|+++..-.
T Consensus 233 t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 233 AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECc
Confidence 0112234 677655555566778889999999987643
No 334
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.31 E-value=0.69 Score=39.25 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=56.2
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+.+|+-+|+|. |......++..+ .+|+.+|+++.....+... .+++...+ +. . ..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~------------G~~v~~l~--ea--l----~~ 267 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD------------GFRVMTME--EA--A----EL 267 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc------------CCEecCHH--HH--H----hC
Confidence 4789999999996 666666666554 4899999988665444321 11222111 10 1 12
Q ss_pred eeEEEecCChHHHHH-HHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKEEYNS-WLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~-~~~~~L~~gG~l~~~~ 158 (206)
.|+|+.......+++ .....+++|++++...
T Consensus 268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 268 GDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 399988776666664 6788899998776553
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.28 E-value=0.89 Score=30.72 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=54.6
Q ss_pred ccCchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCeeEEEecCC
Q psy10573 59 SGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTRVIQSCWT 136 (206)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~i~~~~~ 136 (206)
||.|..+..+++.+...+ .++.+|.+++..+.+++. .+.++.+|..+..-+ ...-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 455677777776654444 799999999998888653 367888883322111 012234576766544
Q ss_pred hHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 137 KEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 137 ~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
-.. ......+.+.|...++.......
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 322 22344566677888887766543
No 336
>KOG1227|consensus
Probab=93.24 E-value=0.04 Score=43.95 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
-.+..|+|+-+|-|+++..+.-..+ ...|+++|.+|..++..+.+++.++. ..+...+.+|.. .+- ++...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R--~~~--~~~~A 263 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNR--NPK--PRLRA 263 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhcccc--ccC--ccccc
Confidence 3458999999999999984433332 23899999999999999998877332 123344444411 111 35556
Q ss_pred eEEEecCC--hHHHHHHHHhcccCCcE-EEEE
Q psy10573 129 RVIQSCWT--KEEYNSWLLDQLVPGGR-MVMP 157 (206)
Q Consensus 129 D~i~~~~~--~~~~~~~~~~~L~~gG~-l~~~ 157 (206)
|-|..... .+.-.-.+.++|+|.|- ++=.
T Consensus 264 drVnLGLlPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 264 DRVNLGLLPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred hheeeccccccccchHHHHHHhhhcCCcEEEE
Confidence 77766433 23333445677776443 4433
No 337
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=93.20 E-value=1.1 Score=36.92 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--cccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++.-.. .-+..... ++.. ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~~~~~~~-- 250 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKEFGAT--------DFINPKDSDKPVSEVIREM-- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHcCCC--------cEeccccccchHHHHHHHH--
Confidence 67889999888874 6666667776542 2789999998888888642111 00110000 0011 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
..+.+|+|+....-...+....+.++++ |.++....
T Consensus 251 ~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 251 TGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred hCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcC
Confidence 1245699997666555667788888875 88877644
No 338
>KOG2651|consensus
Probab=93.17 E-value=0.35 Score=40.04 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~ 92 (206)
.+-..|+|+|+|.|+++..++-..+ -+|++||-|....+.|+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQ 193 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHH
Confidence 4557899999999999999986654 39999999976655543
No 339
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=93.12 E-value=1.2 Score=37.56 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=63.1
Q ss_pred CCCCCeEEEEc-cc-CchHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE----cccccc-c
Q psy10573 48 IKPGARILDIG-SG-SGYLTACLAYMAGPE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA----YFWLRH-L 119 (206)
Q Consensus 48 ~~~~~~vLDlG-~G-~G~~~~~l~~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~----~d~~~~-~ 119 (206)
+.++.+|+-+| +| .|..+..+++..+.+ .+++++|.++..++.+++.+...... .+ ....++. .++... .
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~-~G-a~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS-RG-IELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc-cC-ceEEEECCCccccHHHHHH
Confidence 57788888887 45 477777777765322 37999999999999888753210000 00 0111121 111110 0
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. .....+|+++....-...+....+.++++|.+++..
T Consensus 251 ~~-t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 EL-TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HH-hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 11 123357998886655566777889999888776543
No 340
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.11 E-value=1 Score=35.32 Aligned_cols=96 Identities=24% Similarity=0.136 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.++|-.|+|. |..+..+++..+.. ++++++.+++..+.+++.-.. ..+ +... . ... ...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~-~--~~~--~~~ 158 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEALGPA--------DPV--AADT-A--DEI--GGR 158 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHcCCC--------ccc--cccc-h--hhh--cCC
Confidence 67788888888775 66667777765431 399999888887766653100 011 0000 0 001 233
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++.............+.++++|.++....
T Consensus 159 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 159 GADVVIEASGSPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCCEEEEccCChHHHHHHHHHhcCCcEEEEEec
Confidence 459998765544566778889999999986543
No 341
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.08 E-value=1.3 Score=36.58 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc--ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY--FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~--d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+- .++++++.+++..+.+++. .. .. +..... ++... ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~l-Ga--------~~~i~~~~~~~~~~~~v~~~- 252 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKKF-GA--------TDCVNPKDHDKPIQQVLVEM- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc-CC--------CEEEcccccchHHHHHHHHH-
Confidence 67889999888764 6666777776542 2689999999888877542 11 11 111110 11110 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
.++.+|+|+....-...+....+.++++ |+++....
T Consensus 253 -~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 -TDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred -hCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEcc
Confidence 2235799998766555667788899887 98886643
No 342
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.98 E-value=0.082 Score=35.81 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=24.9
Q ss_pred eeEEEecCCh------------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTK------------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~------------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
||+|+|-... ..+++.++..|+|||.+++....+.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 6999886553 3367899999999999999866543
No 343
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.90 E-value=1.4 Score=35.77 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
++.+||..|+|. |..+..+++..+. .++++++.++...+.+++.-.. .++..+-..........+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~g~~-----------~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAMGAD-----------ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcCCC-----------EEEcCCchhhhhhhccCCCc
Confidence 678888888765 6677777776542 1688888888877766542110 11111100000010012347
Q ss_pred eEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 129 RVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 129 D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+++.........+...+.|+++|+++...
T Consensus 233 d~vld~~g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 999987664556678889999999998754
No 344
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.82 E-value=0.95 Score=37.98 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+.. .++.+|.++..++.+++.- . . .+... +.... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~-~vi~~d~~~~r~~~a~~~G-a--------~--~v~~~~~~~~~~~v~~~- 249 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAA-VVIVGDLNPARLAQARSFG-C--------E--TVDLSKDATLPEQIEQI- 249 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHHcC-C--------e--EEecCCcccHHHHHHHH-
Confidence 67788887788875 66777777766432 4566788888888887631 1 1 11111 11110 111
Q ss_pred CCCCCeeEEEecCChH--------------HHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKE--------------EYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++.....+ ..++...+.++++|.+++.-.
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 1223579998766653 467888899999999988654
No 345
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.82 E-value=0.93 Score=40.78 Aligned_cols=108 Identities=10% Similarity=-0.119 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCchHHHHHHHHh------CC-----CceEEEEeCCHH---HHHHHH-----------HhhhccCcc---
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVME---LAESSI-----------KNIDKGNSE--- 101 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~------~~-----~~~v~~iD~s~~---~~~~a~-----------~~~~~~~~~--- 101 (206)
..-+|+|+|-|+|.......+.. .+ .-+++++|..+- .+..+. .........
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998765555333 12 237788996442 222221 111110000
Q ss_pred ----cc--CCCceEEEEcccccccccCCCCCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEec
Q psy10573 102 ----LL--DQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 102 ----~~--~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. +.-.++++.+|..+..+- -...+|+++.++-- ..++..+.++++|||++...+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 00 111345666774332221 12457999987532 3478999999999999976554
No 346
>KOG2078|consensus
Probab=92.81 E-value=0.13 Score=43.03 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=51.4
Q ss_pred cCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
...+|..|.|+.||.|-++..++. .+|.|++-|.++++++..+.++..+..+ ..++.....|
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmd 307 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMD 307 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccc---hhheeeeccc
Confidence 368999999999999999999886 4489999999999999999998875532 3447776666
No 347
>KOG2360|consensus
Probab=92.63 E-value=0.37 Score=39.88 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
..+|..|+|.+|..|.-+..++......++++++|.+....+..++-+...+ ...+....+|
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~d 272 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGD 272 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCcccccccc
Confidence 4678999999999999999998887667899999999999999888877633 2344444555
No 348
>PLN02494 adenosylhomocysteinase
Probab=92.63 E-value=1.3 Score=38.13 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=62.5
Q ss_pred HHHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 37 HAQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
...+.+... ..-.+++|+-+|+|. |......++..+ .+|+++|.++.....+... .+.+...+
T Consensus 241 ~d~i~r~t~-i~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~------------G~~vv~le- 304 (477)
T PLN02494 241 PDGLMRATD-VMIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME------------GYQVLTLE- 304 (477)
T ss_pred HHHHHHhcC-CccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc------------CCeeccHH-
Confidence 444444433 235689999999997 666666666554 4899999988654444321 11222111
Q ss_pred ccccccCCCCCCeeEEEecCChHHH-HHHHHhcccCCcEEEEEec
Q psy10573 116 LRHLLLTNPHGSTRVIQSCWTKEEY-NSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 116 ~~~~~~~~~~~~~D~i~~~~~~~~~-~~~~~~~L~~gG~l~~~~~ 159 (206)
...... |+|+......++ .......+++|++++...-
T Consensus 305 Eal~~A-------DVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 305 DVVSEA-------DIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHHhhC-------CEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 001123 999987776665 4778889999998877644
No 349
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.47 E-value=1.6 Score=36.06 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-----ccccc-cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-----FWLRH-LL 120 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-----d~~~~-~~ 120 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.+++..+.+++. .. . .++.. ++... ..
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~~-Ga--------~--~~i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKKF-GV--------T--EFVNPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc-CC--------c--eEEcccccchhHHHHHHH
Confidence 67889999888764 6666777776542 2789999999888888652 11 1 11111 01000 11
Q ss_pred cCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEec
Q psy10573 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVG 159 (206)
Q Consensus 121 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~ 159 (206)
. ..+.+|+++....-...+....+.++++ |++++...
T Consensus 253 ~--~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 253 M--TGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred H--hCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECc
Confidence 1 2235799988765555667778888996 88876643
No 350
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.45 E-value=1 Score=36.39 Aligned_cols=97 Identities=22% Similarity=0.080 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ ++.++.+++..+.+++.- . . .++..+ .......
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~~~~~- 222 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKLG-A--------T--ETVDPSREDPEAQKED- 222 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhC-C--------e--EEecCCCCCHHHHHHh-
Confidence 57788999888653 666666666654 34 788888888777764421 1 1 122211 0000111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+++....-........+.|+++|+++....
T Consensus 223 -~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 223 -NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEec
Confidence 334579999865545567778899999999876643
No 351
>PRK13699 putative methylase; Provisional
Probab=92.39 E-value=0.26 Score=38.12 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=15.5
Q ss_pred HHHHHHHhcccCCcEEEEE
Q psy10573 139 EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 139 ~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.++.++|||||.+++.
T Consensus 53 ~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 53 PACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 3568889999999988764
No 352
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.39 E-value=1.8 Score=35.64 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.++.+|+-.|+|. |..+..+++..+ .+++.++.+++....+.+.+.. .. .+...+....... . ..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~Ga--------~~-~i~~~~~~~~~~~--~-~~ 244 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHLGA--------DD-YLVSSDAAEMQEA--A-DS 244 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhcCC--------cE-EecCCChHHHHHh--c-CC
Confidence 5788888888764 777777777654 4788888777665555433321 10 1111110000001 1 23
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+|+++........++.+.+.++++|+++..-
T Consensus 245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 245 LDYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CcEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence 6999887665556677889999999988754
No 353
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.32 E-value=4 Score=31.21 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCch--HHHHH--HHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGY--LTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~--~~~~l--~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~ 107 (206)
..|... .++.+|.. -.....+++.+|+-|. .+..| +.+- .+++++.|-.++..+...++.+...+. ...
T Consensus 25 ~ep~~a-EfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~ 97 (218)
T PF07279_consen 25 KEPGVA-EFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGL----SDV 97 (218)
T ss_pred CCCCHH-HHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccc----ccc
Confidence 344444 44444431 3445678888665432 23333 3322 457999998888877777777765221 134
Q ss_pred eEEEEcccccccccCCCCCCeeEEEecCChHHHHHHHHhccc--CCcEEEE
Q psy10573 108 VQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLV--PGGRMVM 156 (206)
Q Consensus 108 i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~--~gG~l~~ 156 (206)
++|+.++..+...- .-...|.++++.-.+....++.+.++ |.|-+++
T Consensus 98 vEfvvg~~~e~~~~--~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 98 VEFVVGEAPEEVMP--GLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred ceEEecCCHHHHHh--hccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 68888872221111 11345999998888777656666554 4565544
No 354
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=92.24 E-value=2 Score=34.47 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. ..+.... +. . ..+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~~-~~-----~--~~~ 213 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-LGV--------ETVLPDE-AE-----S--EGG 213 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------cEEeCcc-cc-----c--cCC
Confidence 57788888887653 555566666554 478889888888888876 221 1111110 10 1 334
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+|+++....-....+...+.|+++|.++..
T Consensus 214 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 214 GFDVVVEATGSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 4699988655445567778889999999863
No 355
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=92.03 E-value=3.1 Score=33.83 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.++.....+++.-.. .-+.....+.... ... .+.
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKLGAT--------HTVNSAKGDAIEQVLEL-TDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCCC--------ceeccccccHHHHHHHH-hCC
Confidence 56778877777753 5555666666542 3788898888776666542111 0011111111110 011 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++.........+.+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEEec
Confidence 346999876554556778889999999987653
No 356
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.01 E-value=1.3 Score=36.65 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---cccc-ccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLR-HLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~-~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+.. .+++++.++...+.+++.-. -.++.. +... ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~-~v~~~~~~~~k~~~~~~~g~-----------~~~i~~~~~~~~~~v~~~- 250 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCT-TIIAVDIVDSRLELAKELGA-----------THVINPKEEDLVAAIREI- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHcCC-----------cEEecCCCcCHHHHHHHH-
Confidence 56788888888764 67777777766432 68899998887776654211 111111 1111 1111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
....+|+++....-........+.++++|+++....
T Consensus 251 -~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 251 -TGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred -hCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCc
Confidence 133579999766544566788899999999887543
No 357
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.00 E-value=5.6 Score=32.27 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCC--CeEEEEcc--cCchHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-
Q psy10573 48 IKPG--ARILDIGS--GSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH- 118 (206)
Q Consensus 48 ~~~~--~~vLDlG~--G~G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~- 118 (206)
+.++ .+||-.|+ |.|..+..+++..+ + ++++++.+++..+.+++.+.. . .++.. ++.+.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~lGa--------~--~vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSELGF--------D--AAINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhcCC--------c--EEEECCCCCHHHHH
Confidence 4554 78888875 35777777877654 4 699999888877777653321 1 11111 11111
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
... .++.+|+++....-.. .....+.|+++|+++...
T Consensus 218 ~~~--~~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 218 REL--CPEGVDVYFDNVGGEI-SDTVISQMNENSHIILCG 254 (345)
T ss_pred HHH--CCCCceEEEECCCcHH-HHHHHHHhccCCEEEEEe
Confidence 111 2245799997655443 477889999999998653
No 358
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.88 E-value=2.5 Score=36.83 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCcccc----CC---CceEEEEccccc--cc
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQ---GRVQFVAYFWLR--HL 119 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----~~---~~i~~~~~d~~~--~~ 119 (206)
++.+++-+|+|. |..+..+++..+ +.++++|.++..++.+++ +........ +. ........+..+ ..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 568999999996 677777777765 479999999998888775 221000000 00 000001011000 00
Q ss_pred ccCCCCCCeeEEEecCC-----hHH-HHHHHHhcccCCcEEEEEecC
Q psy10573 120 LLTNPHGSTRVIQSCWT-----KEE-YNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~-----~~~-~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+.-.-..+|+|+.... .+. +.++..+.+|||+.++-....
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 01000234699987662 222 457889999999998755444
No 359
>PRK10083 putative oxidoreductase; Provisional
Probab=91.80 E-value=1.8 Score=35.12 Aligned_cols=101 Identities=11% Similarity=-0.087 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYM-AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+|+-.|+|. |..+..+++. .+. ..+++++.+++..+.+++.-... -+.....++.....- ..
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~Ga~~--------~i~~~~~~~~~~~~~--~g 226 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKESGADW--------VINNAQEPLGEALEE--KG 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHhCCcE--------EecCccccHHHHHhc--CC
Confidence 67888998899764 5555566654 232 25788898888887776532110 001101111111100 11
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-........+.|+++|+++....
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1246887755544566778899999999987643
No 360
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.67 E-value=3.3 Score=34.03 Aligned_cols=22 Identities=27% Similarity=0.236 Sum_probs=15.3
Q ss_pred CCCCeEEEEcccCchHHHHHHH
Q psy10573 49 KPGARILDIGSGSGYLTACLAY 70 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~ 70 (206)
...-+|+|+||.+|..+..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3446899999999998876654
No 361
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.56 E-value=1 Score=33.82 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=58.3
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
...++.+|-+|+- +|.+...++.. .++|+.+|+.|.+..... +++.|.. ...+ ..|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp-------------~~v~Fr~-----~~~~--~~G 98 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP-------------NNVKFRN-----LLKF--IRG 98 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC-------------CCccHhh-----hcCC--CCC
Confidence 3567899999987 68777777653 459999999996654442 3454432 2334 677
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+|+|+.-.++-.+-.+..+-++|+- +++.-+.+
T Consensus 99 ~~DlivDlTGlGG~~Pe~L~~fnp~v-fiVEdP~g 132 (254)
T COG4017 99 EVDLIVDLTGLGGIEPEFLAKFNPKV-FIVEDPKG 132 (254)
T ss_pred ceeEEEeccccCCCCHHHHhccCCce-EEEECCCC
Confidence 88999886665444445556666654 44554443
No 362
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.53 E-value=4.2 Score=33.00 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEc-ccccc-cccC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAY-FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~-d~~~~-~~~~ 122 (206)
+.++.+||-.|+ | .|..+..+++..+ .++++++.+++..+.+++.+.. .. +..... ++... ...
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~- 217 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRY- 217 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHh-
Confidence 678899998886 3 4777777877654 4788888888888877653321 11 111111 21111 111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....- .......+.|+++|+++...
T Consensus 218 -~~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 218 -FPNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -CCCCcEEEEECCCH-HHHHHHHHHhccCcEEEEec
Confidence 12457999976554 55678889999999998653
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.48 E-value=1.7 Score=35.34 Aligned_cols=98 Identities=22% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---c---ccc-
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---W---LRH- 118 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~---~~~- 118 (206)
+.++.+||-.|+|. |..+..+++..+ .+ ++.++.+++..+.+++. .. . .++..+ . ...
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g~--------~--~vi~~~~~~~~~~~~~~ 226 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL-GA--------T--HTVNVRTEDTPESAEKI 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc-CC--------c--EEeccccccchhHHHHH
Confidence 67888888777764 667777777654 34 88888888777766542 11 0 111111 0 000
Q ss_pred cccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 119 LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
... .....+|+|+........+....+.|+++|+++....
T Consensus 227 ~~~-~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 227 AEL-LGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHH-hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 011 1334579999876655466788899999999886543
No 364
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.40 E-value=6.5 Score=32.36 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=73.0
Q ss_pred HHHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--- 113 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--- 113 (206)
....+..+ ++++.+|.-+|||- |-.+..-++.. ...+++++|++++.++.|++.=. .+++..
T Consensus 175 Gav~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGA-----------T~~vn~~~~ 240 (366)
T COG1062 175 GAVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGA-----------THFVNPKEV 240 (366)
T ss_pred HHhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCC-----------ceeecchhh
Confidence 33445555 78999999999985 55555555555 34599999999999999987433 233332
Q ss_pred -ccccccccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCCCC
Q psy10573 114 -FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 114 -d~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
|..+... .+-++..|.++....-....+.....++++|..++.-.....
T Consensus 241 ~~vv~~i~-~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 241 DDVVEAIV-ELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred hhHHHHHH-HhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 2111100 113345587777666666778888888889998888665543
No 365
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.26 E-value=3.8 Score=32.97 Aligned_cols=96 Identities=22% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+| .|..+..+++..+ .++++++.+++..+.+++. .. . .++.........- ..+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~-g~--------~--~~~~~~~~~~~~~--~~~ 224 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKL-GA--------D--EVVDSGAELDEQA--AAG 224 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh-CC--------c--EEeccCCcchHHh--ccC
Confidence 5778888888887 4666666776654 4789999888887777432 11 0 1111110000000 113
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+++....-......+.+.|+++|.++...
T Consensus 225 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 225 GADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 46999876454456677889999999988764
No 366
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.19 E-value=0.89 Score=36.75 Aligned_cols=106 Identities=22% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEEcccCchHHHHHHHHh-------------------CCCceEEEEeCCHHH--HHHHHHhhhcc------------
Q psy10573 52 ARILDIGSGSGYLTACLAYMA-------------------GPEGRVYGVEHVMEL--AESSIKNIDKG------------ 98 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~-------------------~~~~~v~~iD~s~~~--~~~a~~~~~~~------------ 98 (206)
.+||.||.|.|.-...++... .+..+++.||+.++. +......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986666555444 011388999988864 44444433322
Q ss_pred CccccCCCceEEEEcccccccc--c-C-CCCCCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEE
Q psy10573 99 NSELLDQGRVQFVAYFWLRHLL--L-T-NPHGSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 99 ~~~~~~~~~i~~~~~d~~~~~~--~-~-~~~~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~ 157 (206)
.......-++.|.+.|+..... + . +...+.++|..-..+. .++..+-..+++|..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0001122357888888322111 0 0 1112335554333322 2556777888888877655
No 367
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.78 E-value=2.8 Score=34.93 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHH-HHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMEL-AESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPH 125 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 125 (206)
.++..|+-.|+|. |..+..+++..+ .++++++.+++. .+.+++ +.. . .++.. +....... .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~-lGa--------~--~~i~~~~~~~v~~~--~- 240 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR-LGA--------D--SFLVTTDSQKMKEA--V- 240 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh-CCC--------c--EEEcCcCHHHHHHh--h-
Confidence 5788898888875 777777777664 478888876543 444432 111 1 11111 10000011 1
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++....-...+....+.++++|.++...
T Consensus 241 ~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 241 GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEc
Confidence 236999987665556677889999999998764
No 368
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.77 E-value=4.4 Score=32.65 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=57.2
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~ 127 (206)
.+.+++-+|+|. |......++..+ ++|+.+|.++...+.+++. ..+++.. +..+. -..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~------------G~~~~~~~~l~~~------l~~ 210 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEM------------GLSPFHLSELAEE------VGK 210 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc------------CCeeecHHHHHHH------hCC
Confidence 578999999985 555555555543 5999999998765555431 1122211 11111 013
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|+|+...+..-+.+...+.+++++.++-....+.
T Consensus 211 aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pg 245 (296)
T PRK08306 211 IDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPG 245 (296)
T ss_pred CCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCC
Confidence 49999876554455677788899988776655543
No 369
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.68 E-value=3.7 Score=33.88 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--cccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++ +... .-+..... +... ....
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~g~~-------~~v~~~~~~~~~~~~l~~~-- 249 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-LGAT-------ECINPRDQDKPIVEVLTEM-- 249 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-hCCC-------eecccccccchHHHHHHHH--
Confidence 57788888888764 6666667776542 257888888888877754 2210 00111111 1001 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhccc-CCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~ 159 (206)
..+.+|+++.............+.|+ ++|+++....
T Consensus 250 ~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 250 TDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred hCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEec
Confidence 12457999976544456677888899 9999886643
No 370
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.68 E-value=1 Score=36.81 Aligned_cols=77 Identities=10% Similarity=-0.050 Sum_probs=50.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
..+++|+.||.|.+..-+.... - --+.++|+++.+++.-+.++.. ..++..|..+...-.+....+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f-~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-F-EIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-C-eEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCE
Confidence 3579999999999998776543 1 1556889999999998887652 23444452211111112226699
Q ss_pred EEecCChHH
Q psy10573 131 IQSCWTKEE 139 (206)
Q Consensus 131 i~~~~~~~~ 139 (206)
++..++|+.
T Consensus 71 ligGpPCQ~ 79 (328)
T COG0270 71 LIGGPPCQD 79 (328)
T ss_pred EEeCCCCcc
Confidence 999888753
No 371
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=90.59 E-value=4.6 Score=32.49 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. -.++..+.. +..
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~g~----------~~~~~~~~~-------~~~ 224 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-LGA----------DWAGDSDDL-------PPE 224 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-hCC----------cEEeccCcc-------CCC
Confidence 67788888787764 555566666543 588888888877766643 211 011111100 123
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+++.........+...+.|+++|+++...
T Consensus 225 ~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 225 PLDAAIIFAPVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc
Confidence 35888765444456788899999999998643
No 372
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.56 E-value=0.71 Score=33.11 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEcccCc--hHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHh
Q psy10573 56 DIGSGSG--YLTACLA-YMAGPEGRVYGVEHVMELAESSIKN 94 (206)
Q Consensus 56 DlG~G~G--~~~~~l~-~~~~~~~~v~~iD~s~~~~~~a~~~ 94 (206)
|+|+..| .....+. +..++.++++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2455778999999999999988888
No 373
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=90.47 E-value=3.9 Score=33.23 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=57.8
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc-ccCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL-LLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~ 124 (206)
..++.+|+-.|+| .|..+..+++..+ .+ +++++.++...+.+++.-.. .-+.....++.... .. .+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~l~~~-~~ 227 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKMGAT--------YVVNPFKEDVVKEVADL-TD 227 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCc--------EEEcccccCHHHHHHHh-cC
Confidence 5677787766665 3566666666654 34 78887777666666542110 00111111111110 11 13
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-......+.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEcc
Confidence 34579999865545567788899999999876643
No 374
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=90.44 E-value=5.3 Score=32.53 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---ccc-ccccCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLR-HLLLTN 123 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~-~~~~~~ 123 (206)
.++.+||-.|+|. |..+..+++..+. .+++.++.++...+.+++ +.. ..++... +.. ....
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~g~----------~~~~~~~~~~~~~~~~~~-- 239 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-AGA----------DVVVNGSDPDAAKRIIKA-- 239 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-hCC----------cEEecCCCccHHHHHHHH--
Confidence 4678888888764 6666777776542 268888888887777744 211 0111111 100 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
..+.+|+++.............+.|+++|+++..
T Consensus 240 ~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 240 AGGGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred hCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 1225799998765556678889999999998864
No 375
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.30 E-value=1.9 Score=34.40 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCee
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTR 129 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 129 (206)
.|+.|+-+|-. --.+..++ ..+-.-++..+|+++..++...+..++ .+..++..+.-|..+..|- --...||
T Consensus 152 ~gK~I~vvGDD-DLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee-----~g~~~ie~~~~Dlr~plpe-~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEE-----LGYNNIEAFVFDLRNPLPE-DLKRKFD 223 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHH-----hCccchhheeehhcccChH-HHHhhCC
Confidence 35668888833 22333332 122223899999999999999988887 4456788888885543331 0145679
Q ss_pred EEEecCCh-----HHHHHHHHhcccCC---cEEEEEecC
Q psy10573 130 VIQSCWTK-----EEYNSWLLDQLVPG---GRMVMPVGE 160 (206)
Q Consensus 130 ~i~~~~~~-----~~~~~~~~~~L~~g---G~l~~~~~~ 160 (206)
+++-+++- ..++..-...|+.. |++.++...
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 99988773 22344445566654 677666544
No 376
>KOG2912|consensus
Probab=90.15 E-value=1.5 Score=35.67 Aligned_cols=79 Identities=13% Similarity=-0.022 Sum_probs=47.4
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccc---ccccC-CCCCCee
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLR---HLLLT-NPHGSTR 129 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~-~~~~~~D 129 (206)
-+|||+|....-..+-... .+-...++|++...+..|+++..++++. ..+.++..+... ...++ .++..||
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence 3789887644333332111 2235678999999999999999885543 345555543100 00111 2345689
Q ss_pred EEEecCCh
Q psy10573 130 VIQSCWTK 137 (206)
Q Consensus 130 ~i~~~~~~ 137 (206)
.++|++++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99999886
No 377
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.04 E-value=3.4 Score=33.50 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++. .. .. +.....+...... ..
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~-g~--------~~~i~~~~~~~~~~~~---~~ 226 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKL-GA--------HHYIDTSKEDVAEALQ---EL 226 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc-CC--------cEEecCCCccHHHHHH---hc
Confidence 67788999888764 666677777654 4789999888877777542 11 00 1110111111000 01
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++........+....+.|+++|.++....
T Consensus 227 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 227 GGAKLILATAPNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCCEEEECCCchHHHHHHHHHcccCCEEEEEec
Confidence 2359998754444566778899999999886643
No 378
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.03 E-value=1.5 Score=37.72 Aligned_cols=90 Identities=12% Similarity=-0.110 Sum_probs=56.7
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+++|+-+|+|. |......++.. +.+|+.+|.++.....+.. . .+++...+ .-....
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~---~---------G~~~~~le-ell~~A------ 310 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM---E---------GYQVVTLE-DVVETA------ 310 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh---c---------CceeccHH-HHHhcC------
Confidence 4688999999996 65555555544 3589999888765433332 1 12222222 001123
Q ss_pred eeEEEecCChHHHH-HHHHhcccCCcEEEEEecC
Q psy10573 128 TRVIQSCWTKEEYN-SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 128 ~D~i~~~~~~~~~~-~~~~~~L~~gG~l~~~~~~ 160 (206)
|+|+......+++ ......+|||++++-..-.
T Consensus 311 -DIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 311 -DIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -CEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 9998876666655 5788889999988776444
No 379
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.96 E-value=0.76 Score=33.50 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHhcccCCcEEEEEecCCCC
Q psy10573 140 YNSWLLDQLVPGGRMVMPVGEPFK 163 (206)
Q Consensus 140 ~~~~~~~~L~~gG~l~~~~~~~~~ 163 (206)
...++.++||+||.+++.++-+.+
T Consensus 93 ~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 93 AMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHHhhccCCeEEEEeecCCc
Confidence 446788999999999999998763
No 380
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.66 E-value=0.75 Score=37.43 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=32.1
Q ss_pred EEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 54 vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|+|+.||.|.++.-+.... - --+.++|+++.+.+.-+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~-~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-F-KCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcC-C-eEEEEEeCCHHHHHHHHHhCC
Confidence 5899999999998886532 2 145689999999998887764
No 381
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.48 E-value=2.6 Score=34.19 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--c-ccccccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--W-LRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~-~~~~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++. .. ..++... . ......
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~-g~----------~~~~~~~~~~~~~~~~~- 222 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAREL-GA----------DDTINPKEEDVEKVREL- 222 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc-CC----------CEEecCccccHHHHHHH-
Confidence 57788888888765 666677776654 34 88888887776666432 11 1111111 0 000111
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-......+.+.|+++|.++...
T Consensus 223 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 123347999976544556678889999999987664
No 382
>KOG0023|consensus
Probab=89.42 E-value=1.7 Score=35.35 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEE-EcccccccccCCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFV-AYFWLRHLLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~-~~d~~~~~~~~~~ 124 (206)
+.||+++--.|.| -|.++..+++..+- +|+++|.+....+.+-+.+.. ..+ .+. ..|+.+... ..-
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~--rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~-~~~ 247 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGM--RVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIM-KTT 247 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCc--EEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHH-Hhh
Confidence 4688888777766 68999999888764 999999998777777666543 222 111 112111110 112
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
++-.|.+..- .++.++...+.||++|.+++.-...
T Consensus 248 dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 248 DGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred cCcceeeeec--cccchHHHHHHhhcCCEEEEEeCcC
Confidence 3334555422 3445566778999999998875543
No 383
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.32 E-value=3.9 Score=33.23 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
..++.+||-.|+|. |..+..+++..+ . ++++++.++.....+++.-.. .-+.....++...... .+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~-~~~ 229 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKMGAD--------VVINPREEDVVEVKSV-TDG 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCcc--------eeeCcccccHHHHHHH-cCC
Confidence 45677877777654 667777777654 3 677887777666665542110 0000001111100111 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+.+|+++....-......+.+.|+++|.++...
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 457999987655556677889999999987653
No 384
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.21 E-value=2.6 Score=31.77 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i 108 (206)
..|...-.+.+++- -..+..|+|+|+-.|..+..++... |...++.++|++=...+-+... .+++
T Consensus 53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 34555555555554 2456789999999998887776542 3345899998876544333211 3689
Q ss_pred EEEEcccccc---cccCCCCCCeeEEEe----cCChHHHH---HHHHhcccCCcEEEEEecC
Q psy10573 109 QFVAYFWLRH---LLLTNPHGSTRVIQS----CWTKEEYN---SWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 109 ~~~~~d~~~~---~~~~~~~~~~D~i~~----~~~~~~~~---~~~~~~L~~gG~l~~~~~~ 160 (206)
.|+.++.... .+.....+.+--|++ +....+++ +....+|..|..+++.-..
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 9999981111 010001111122322 23344444 5556778888888776443
No 385
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=88.98 E-value=6.3 Score=32.43 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=58.2
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ +.. ..++.. ++... ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~-~g~----------~~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE-LGA----------THTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH-hCC----------ceEecCCcccHHHHHHHH
Confidence 4677788767765 3666666776654 35 8888888877776643 211 111111 11100 001
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.++..+|+|+....-......+.+.|+++|.++....
T Consensus 252 -~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 252 -TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred -hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 1234579998754433366778899999999887643
No 386
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.81 E-value=10 Score=31.11 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEcccc----cccccC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWL----RHLLLT 122 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~----~~~~~~ 122 (206)
.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++ +.. ..+ .....+.. .....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~i~~~- 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE-FGA--------DATIDIDELPDPQRRAIVRDI- 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-cCC--------CeEEcCcccccHHHHHHHHHH-
Confidence 4788888888764 6666667766542 278899888877766653 211 111 00000000 00001
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.....+|+++....-...+....+.++++|+++...
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence 122357999976554456677889999999998654
No 387
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=88.77 E-value=7.2 Score=32.06 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++...+.+++ +.. ..++.. ++... ...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~g~----------~~vv~~~~~~~~~~l~~~- 246 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-FGA----------THTVNASEDDAVEAVRDL- 246 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-hCC----------eEEeCCCCccHHHHHHHH-
Confidence 56788888887763 6666777776542 148888888877766643 211 111111 11110 011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-........+.|+++|+++...
T Consensus 247 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 247 TDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 123457999876554456678889999999987664
No 388
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.63 E-value=3.7 Score=34.13 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred cCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
.+.++.+||-.|+|. |..+..+++..+. .++++++.++...+.+++.-.. .-+..... ++... ...
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEMGAD--------YVFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCC--------EEEcccccccccHHHHHHHh
Confidence 467788888778764 5555666666542 1688898888766666542111 00111100 11110 111
Q ss_pred CCCCCCeeEEEecCCh-HHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTK-EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~-~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+|+....- ........+.|+++|+++...
T Consensus 271 -~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 271 -TKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred -cCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 133457999876543 345677788999999998654
No 389
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.55 E-value=6.2 Score=27.12 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=54.1
Q ss_pred CeEEEEcccCchH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~G~~-~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.+|+|+|-|-=.. +..+++ .++.++++|+++. .+. ..+.++..|..+..-- --...|+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e---~g~dv~atDI~~~---~a~-------------~g~~~v~DDitnP~~~--iY~~A~l 73 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAE---RGFDVLATDINEK---TAP-------------EGLRFVVDDITNPNIS--IYEGADL 73 (129)
T ss_pred CcEEEEccchHHHHHHHHHH---cCCcEEEEecccc---cCc-------------ccceEEEccCCCccHH--HhhCccc
Confidence 4999999875322 233333 3468999999886 111 2467777773322110 0233499
Q ss_pred EEecCChHHHHHHHHhccc-CCcEEEEEecCCCC
Q psy10573 131 IQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPFK 163 (206)
Q Consensus 131 i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~~ 163 (206)
|++.-+.+.+...+.++.+ -|..+++....+..
T Consensus 74 IYSiRpppEl~~~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 74 IYSIRPPPELQSAILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred eeecCCCHHHHHHHHHHHHhhCCCEEEEecCCCC
Confidence 9998887776666655544 35566666555543
No 390
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.44 E-value=1.6 Score=34.56 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhC----CCceEEEEeCCHH
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVME 86 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~v~~iD~s~~ 86 (206)
+.++..++|+|||.|.++.+++.... +...++.||....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 57788999999999999999987763 3358889997663
No 391
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.13 E-value=5.1 Score=32.42 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--cccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+. .++++++.+++..+.+++. .. -.++..+ +... ... .
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~i~~~-~ 231 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAERL-GA----------DHVLNASDDVVEEVREL-T 231 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHh-CC----------cEEEcCCccHHHHHHHH-h
Confidence 56788888888664 5555566665531 4788888888777766432 11 0111111 0000 011 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
+...+|+++....-....+...+.|+++|.++...
T Consensus 232 ~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 232 GGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 22357999976654556788889999999998654
No 392
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.10 E-value=4.9 Score=32.48 Aligned_cols=98 Identities=17% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEE-cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVA-YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~-~d~~~~-~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++.. .+.++++++.+++..+.+++ +.. ..+ .... .+.... ...
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~-~g~--------~~v~~~~~~~~~~~~v~~~-- 227 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKE-VGA--------DLTINSKRVEDVAKIIQEK-- 227 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHH-cCC--------cEEecccccccHHHHHHHh--
Confidence 67888998888653 66666666653 13489999999988888854 211 111 0000 010000 001
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. .+|.++.+..-....+...+.|+++|.++...
T Consensus 228 ~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 228 TG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence 11 35855544444556788899999999988654
No 393
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.79 E-value=4.7 Score=32.72 Aligned_cols=103 Identities=19% Similarity=0.048 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
..++.+|+-.|+|. |..+..+++..+. .+++.++.++...+.+++.-.. .-+.....++... ... ..+
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~lg~~--------~~~~~~~~~~~~~~~~~-~~~ 230 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKMGAT--------RAVNVAKEDLRDVMAEL-GMT 230 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhCCc--------EEecCccccHHHHHHHh-cCC
Confidence 34677877777664 6666667766542 1577778777766665542111 0000001111111 011 123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+|+++....-...+....+.|+++|.++.....
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecC
Confidence 45799998555455667788899999999887543
No 394
>PTZ00357 methyltransferase; Provisional
Probab=87.39 E-value=5.4 Score=36.10 Aligned_cols=101 Identities=17% Similarity=0.052 Sum_probs=57.3
Q ss_pred eEEEEcccCchHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhh---ccCc-cccCCCceEEEEcccccc---c---
Q psy10573 53 RILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNID---KGNS-ELLDQGRVQFVAYFWLRH---L--- 119 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~---~~~~~~v~~iD~s~~~~~~a~~~~~---~~~~-~~~~~~~i~~~~~d~~~~---~--- 119 (206)
.|+-+|+|-|-+.....+. .+...++++||-++..+.....+.. .+.. ...-...++++..|...- .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5888999999887655443 3445689999999664444433321 1110 000023589999992211 0
Q ss_pred ccCC--CCCCeeEEEec--------CChHHHHHHHHhcccC----CcE
Q psy10573 120 LLTN--PHGSTRVIQSC--------WTKEEYNSWLLDQLVP----GGR 153 (206)
Q Consensus 120 ~~~~--~~~~~D~i~~~--------~~~~~~~~~~~~~L~~----gG~ 153 (206)
...+ .-+.+|+|++- -.-+..++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0000 12468999872 1124566677777765 675
No 395
>PLN02702 L-idonate 5-dehydrogenase
Probab=86.98 E-value=6.8 Score=32.21 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE---Ecccccc-ccc-
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---AYFWLRH-LLL- 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~---~~d~~~~-~~~- 121 (206)
+.++.+||-.|+|. |..+..+++..+.. .+++++.++...+.+++.-.. .+..+ ..++... ..+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAP-RIVIVDVDDERLSVAKQLGAD---------EIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHhCCC---------EEEecCcccccHHHHHHHHh
Confidence 56788888888763 66667777765432 578889888777766652111 11111 0111110 000
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
....+.+|+++....-...+....+.|+++|+++...
T Consensus 249 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 249 KAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 0123357999886554456688889999999987553
No 396
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.91 E-value=2.7 Score=29.31 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc--cccCCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH--LLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~ 127 (206)
+..+|+|+|-|.=......++..| ..++++|+.+. .+. ..+.++..|..+. .-| ..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~---~a~-------------~g~~~v~DDif~P~l~iY----~~ 70 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR---KAP-------------EGVNFVVDDIFNPNLEIY----EG 70 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------------------STTEE---SSS--HHHH----TT
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc---ccc-------------cCcceeeecccCCCHHHh----cC
Confidence 345999999997555444444433 59999999987 111 2456777773221 112 34
Q ss_pred eeEEEecCChHHHHHHHHhccc-CCcEEEEEecCCC
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLV-PGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~-~gG~l~~~~~~~~ 162 (206)
.|+|++.-+...+-..+.++.+ -|.-+++...+..
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 5999997776554433333332 4667777766655
No 397
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=86.87 E-value=2.4 Score=30.45 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
.....|+|+|-|+|..--.+...+ |...|+++|..-
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l 62 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRAL 62 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS-
T ss_pred CCCCceEEeccCCCccHHHHHHhC-CCCeEEEEeeec
Confidence 345789999999999999998888 778999999643
No 398
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=86.62 E-value=7.4 Score=31.50 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
..++.+||-.|+|. |..+..+++..+. .++++++.++.....+++ +.. .-+.....++... ... .+.
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~l~~~-~~~ 233 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA-LGA--------EPINFEDAEPVERVREA-TEG 233 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH-hCC--------eEEecCCcCHHHHHHHH-hCC
Confidence 56778888777653 5555666665431 278888877766666544 211 0011111111110 011 133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....-........+.++++|.++...
T Consensus 234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 457999976655556778889999999987654
No 399
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.46 E-value=5.5 Score=32.43 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=60.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.+|.-||.|. |..+..++-.+ ++.|+.+|+|.+.+......+.. +++....+..+... .-...|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee---~v~~aDl 234 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEE---AVKKADL 234 (371)
T ss_pred ccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHH---HhhhccE
Confidence 4567788885 88887777654 45999999999988888766643 56665555111110 0112387
Q ss_pred EEecCCh-----HH-HHHHHHhcccCCcEEEEEec
Q psy10573 131 IQSCWTK-----EE-YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 131 i~~~~~~-----~~-~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|..-.. +. +.+++.+.++||+.++=...
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 7653222 22 44788899999998876544
No 400
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=86.34 E-value=9.6 Score=30.90 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
+.++.+++-.|+|. |..+..+++..+ .+++.++.+++..+.+++ +.. . .++...-.....- ..+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~g~--------~--~vi~~~~~~~~~~--~~~ 231 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-LGA--------D--EFIATKDPEAMKK--AAG 231 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------c--EEecCcchhhhhh--ccC
Confidence 56777777777753 666666666653 488999988887777753 211 1 1111110000000 124
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++.............+.|+++|.++....
T Consensus 232 ~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 232 SLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CceEEEECCCCcchHHHHHHHhcCCCEEEEEec
Confidence 469998765544445777889999999887643
No 401
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=86.18 E-value=9.5 Score=30.94 Aligned_cols=98 Identities=20% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEE-ccccc-ccccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVA-YFWLR-HLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~-~d~~~-~~~~~~ 123 (206)
+.++.+||-.|+|. |..+..+++..+ .++++++.+++..+.+++ +.. ..+ .... .+... ...+
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~i~~~~~~~~~~~~~~~-- 229 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-LGA--------VATVNASEVEDVAAAVRDL-- 229 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-hCC--------CEEEccccchhHHHHHHHH--
Confidence 56778888888753 666666666553 588999888887777754 211 011 1111 12111 0111
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-........+.|+++|.++...
T Consensus 230 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 230 TGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred hCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence 12257999876543445677888999999987653
No 402
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=86.18 E-value=5.1 Score=32.70 Aligned_cols=97 Identities=14% Similarity=-0.013 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+. ..+++++.++.....+++.- . . .++.. +.... ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g-~---------~-~v~~~~~~~~~~~~~~~- 238 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKFG-A---------D-VVLNPPEVDVVEKIKEL- 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHcC-C---------c-EEecCCCcCHHHHHHHH-
Confidence 56777777666653 6666777776643 25778888887776655421 0 1 11111 11110 011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+...+|+++....-...+....+.++++|+++..
T Consensus 239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 12234699987655344567788999999998775
No 403
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.05 E-value=2.5 Score=35.42 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=39.6
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
..+.-.++|. +.++.+||-|++|-.....++... |. +|++||.|+......+-+++
T Consensus 23 Dp~vD~~aL~--i~~~d~vl~ItSaG~N~L~yL~~~--P~-~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 23 DPRVDMEALN--IGPDDRVLTITSAGCNALDYLLAG--PK-RIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CcHHHHHHhC--CCCCCeEEEEccCCchHHHHHhcC--Cc-eEEEEeCCHHHHHHHHHHHH
Confidence 3444556676 899999999987755555554432 43 99999999988777765554
No 404
>PRK08324 short chain dehydrogenase; Validated
Probab=85.88 E-value=14 Score=33.59 Aligned_cols=79 Identities=18% Similarity=0.066 Sum_probs=44.6
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccc----cC--
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL----LT-- 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~-- 122 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.++...+.+.+.+.. ..++.++..|..+... +.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 45778877753 44444444332 2345899999998776666554432 1356777777322111 00
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+.+|+|+.+..
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 01235699988765
No 405
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.58 E-value=4.1 Score=32.45 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 97 (206)
-.++..|||--+|+|..+....... .+.+|+|+++...+.+.+++..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 5789999999999999988776533 2899999999999999999876
No 406
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=85.42 E-value=7.8 Score=31.35 Aligned_cols=100 Identities=23% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCCCeEEEEccc--CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEEcccccc-cccCC
Q psy10573 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVAYFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G--~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~~~-~~~~~ 123 (206)
+.++.+||-.|++ .|..+..+++..+ .+++.+..+++..+.+++ +.. ..+ .....++... ... .
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~--------~~v~~~~~~~~~~~~~~~-~ 230 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-LGA--------DAFVDFKKSDDVEAVKEL-T 230 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-cCC--------cEEEcCCCccHHHHHHHH-h
Confidence 6778899888876 4677777777664 488999888877666643 211 111 0101011110 001 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+...+|+++...........+.+.++++|+++....
T Consensus 231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecC
Confidence 234579999755545566778889999999987643
No 407
>KOG2782|consensus
Probab=85.41 E-value=1 Score=34.58 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|.++..+++.+. .-++...+|..-|.|..+..+.+.. +..++|+.|.+|.+.+.++-..+
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 557788888876 6788999999999999999998877 77799999999988877765553
No 408
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.26 E-value=7.7 Score=31.45 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~~ 122 (206)
+.++..|+-.|+|. |..+..+++..+. ..+++++.++...+.+++.-.. .++.. +.... ...
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~ga~-----------~v~~~~~~~~~~~i~~~- 232 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALAREFGAT-----------DIVAERGEEAVARVREL- 232 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc-----------eEecCCcccHHHHHHHh-
Confidence 56677777678764 6666677776542 2488888887666655542110 11111 11110 001
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-...+..+.+.++++|.++...
T Consensus 233 ~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 233 TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 123346999876544556788889999999987653
No 409
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=85.20 E-value=17 Score=28.68 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++..|+-.|| | .|..+..+++..+ ..++.++.++...+.+++.-.. .-+.....+......-..+.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARALGAD--------HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHcCCc--------eeeecCCccHHHHHHHHcCC
Confidence 567889998997 2 4666666666554 4788888888777766542110 00111111111110000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+|+++....- .....+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVGG-DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECccH-HHHHHHHHhhccCCEEEEEc
Confidence 357999876554 45566788889999887654
No 410
>KOG0022|consensus
Probab=85.14 E-value=3.2 Score=33.78 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred HHHHHhhccCCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccc
Q psy10573 39 QMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWL 116 (206)
Q Consensus 39 ~~~~~l~~~~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~ 116 (206)
.+....+ +.+|..+.-+|.|. |.....-++.. -.++++|||++++-.+.|++.-.. +++.- |..
T Consensus 183 Aa~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~fGaT-----------e~iNp~d~~ 248 (375)
T KOG0022|consen 183 AAWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEFGAT-----------EFINPKDLK 248 (375)
T ss_pred hhhhhcc--cCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhcCcc-----------eecChhhcc
Confidence 3344444 78999999999997 44444445544 345999999999999999864322 22221 211
Q ss_pred c---ccccCCCCCCeeEEEecCChHHHHHHHHhcccCC-cEEEEEecC
Q psy10573 117 R---HLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPG-GRMVMPVGE 160 (206)
Q Consensus 117 ~---~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~l~~~~~~ 160 (206)
. ..-..+-++.+|..+-.-.-.+...++....+.| |.-++.-..
T Consensus 249 ~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 249 KPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred ccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 1 0000123567788887777677777788888888 766655443
No 411
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.04 E-value=9.1 Score=29.58 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhCCCceEEEE--eCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCC
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 126 (206)
..+.+||-+|.|.-..-.. ......+++|+.+ +++++....++. .+++++..++.. ..+ .
T Consensus 23 ~~~~~VLVVGGG~VA~RK~-~~Ll~~gA~VtVVap~i~~el~~l~~~------------~~i~~~~r~~~~-~dl----~ 84 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKG-KTFLKKGCYVYILSKKFSKEFLDLKKY------------GNLKLIKGNYDK-EFI----K 84 (223)
T ss_pred CCCCEEEEECCCHHHHHHH-HHHHhCCCEEEEEcCCCCHHHHHHHhC------------CCEEEEeCCCCh-HHh----C
Confidence 3577999999987443321 1111123466666 777776655431 467777765321 111 1
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
.+++|++...-+.+.+.+....+.-|.++..+..
T Consensus 85 g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 85 DKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 2388888877777878888877776766665443
No 412
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=84.99 E-value=6.5 Score=31.81 Aligned_cols=97 Identities=26% Similarity=0.253 Sum_probs=58.5
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-ccc
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~ 121 (206)
+.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ +.. -.++..+ +... ...
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~g~----------~~~~~~~~~~~~~~i~~~ 229 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-LGA----------DYTIDAAEEDLVEKVREL 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-hCC----------cEEecCCccCHHHHHHHH
Confidence 6778888878865 3666666666654 35 7888888877776643 211 1111111 1110 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-........+.|+++|.++...
T Consensus 230 -~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 230 -TDGRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred -hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 123347999976554556677788999999988654
No 413
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.99 E-value=3.3 Score=30.58 Aligned_cols=89 Identities=20% Similarity=0.152 Sum_probs=52.1
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
-.+++|.-+|+|. |......++.++ .+|+++|.+......... ..+.+...+ .-....
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~------------~~~~~~~l~-ell~~a------ 92 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADE------------FGVEYVSLD-ELLAQA------ 92 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHH------------TTEEESSHH-HHHHH-------
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccc------------ccceeeehh-hhcchh------
Confidence 3578999999985 766666666554 599999998876552221 112222111 001223
Q ss_pred eeEEEecCChH----H-HHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKE----E-YNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~----~-~~~~~~~~L~~gG~l~~~~~ 159 (206)
|+|+...+.. + +-++....+|+|.+|+-+.-
T Consensus 93 -Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 93 -DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred -hhhhhhhccccccceeeeeeeeeccccceEEEeccc
Confidence 8887766642 2 33677788888887765433
No 414
>KOG2920|consensus
Probab=84.86 E-value=1.5 Score=34.88 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHh-hccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 36 IHAQMLELL-KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 36 ~~~~~~~~l-~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
+...+.+.+ .+....+++|||+|||+|--...+.... ...+...|.+.+.+
T Consensus 101 l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 101 LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 344444333 2224678999999999998888776543 24777778888776
No 415
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.86 E-value=9.3 Score=29.02 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCCeEEEEcccC-chH-HHHHHHHhCCCceEEEEeCC--HHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 50 PGARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHV--MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~-~~~l~~~~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
.+.+||-+|.|. |.- +..+++ .+++|+.++.. ++....+. . .++.++..++.. ..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~l~~----~--------~~i~~~~~~~~~-~dl---- 67 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTLLAE----Q--------GGITWLARCFDA-DIL---- 67 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHHH----c--------CCEEEEeCCCCH-HHh----
Confidence 467999999986 322 223333 33588888543 33333322 1 367887776321 111
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
..+|+|++......+...+....+.-|+++-.+..
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 23499998888777777777777777877754443
No 416
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.77 E-value=7.5 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
..+++|+.||.|++..-+-... - --+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-G-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-C-EEEEEEechHHHHHHHHHHc
Confidence 4589999999999999886543 2 15678899999888888775
No 417
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=84.73 E-value=9.2 Score=30.61 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=57.4
Q ss_pred CCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-ccc-cc-ccccCCC
Q psy10573 50 PGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFW-LR-HLLLTNP 124 (206)
Q Consensus 50 ~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~-~~-~~~~~~~ 124 (206)
++.+||-.|+ | .|..+..+++..+ .+++.++.+++..+.+++. .. . .++. .+. .. ...+ .
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~-g~--------~--~v~~~~~~~~~~~~~~--~ 210 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKL-GA--------K--EVIPREELQEESIKPL--E 210 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHc-CC--------C--EEEcchhHHHHHHHhh--c
Confidence 4668888886 3 3666677777654 4788888888877777542 11 0 1111 110 00 0111 2
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....- .......+.++++|+++....
T Consensus 211 ~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 211 KQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred cCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 3456998875554 456778889999999987754
No 418
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.72 E-value=9.1 Score=31.94 Aligned_cols=99 Identities=14% Similarity=0.027 Sum_probs=56.5
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCe
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
++.+|+-+|+|. |..+...+...+ .+|+.+|.++...+.+...+.. .+.....+....... + ..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~-l--~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDA-V--KRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHH-H--ccC
Confidence 346788899984 677677666654 4799999998776665443321 111111110000000 0 234
Q ss_pred eEEEecCCh-----HH-HHHHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTK-----EE-YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~-----~~-~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|+..... +. +.+...+.++++++++-......
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 999876422 22 23666777899998876654433
No 419
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=84.25 E-value=8.7 Score=30.46 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++.+|+-.|+|. |..+..+++..+ .+ ++.+..+++..+.+++. .. ..++.. ++... ...
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~~l~~~ 193 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL-GA----------TEVVTDDSEAIVERVREL 193 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-CC----------ceEecCCCcCHHHHHHHH
Confidence 56788888777643 556566666654 46 88888777766654431 11 111111 11111 001
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+...+|+++.............+.|+++|.++....
T Consensus 194 -~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 194 -TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred -cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEcc
Confidence 1234579999866545566778899999999987643
No 420
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.24 E-value=16 Score=27.70 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW 115 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 115 (206)
+++|+-.|++ |..+..+++.+ ..+.+|++++.+++......+.+.. ..++.++..|+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl 62 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDV 62 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCC
Confidence 5688878875 44444444433 2455899999888766655443322 12567777773
No 421
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.16 E-value=20 Score=28.64 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+++-.|++. |..+..++...+ .+++.++.++...+.++..-.. .-+.....+...........
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFG--ATVIATAGSEDKLERAKELGAD--------YVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCC--------eEEecCChHHHHHHHHHhCC
Confidence 56778888888753 555555555543 4788888888776665432100 00111111111100000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-. ......+.++++|.++....
T Consensus 234 ~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 234 RGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred CCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEec
Confidence 4579998876643 45677788899999887643
No 422
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.59 E-value=10 Score=31.90 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=45.3
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCee
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D 129 (206)
.+||-||||. |+.....+..-+. .+|+..|.+.+....+..... .+++.+..|..+.... .+-. .+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~-~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIK-DFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHh-cCC
Confidence 4788999964 5444444332222 599999999887777765432 2677777773222110 0011 228
Q ss_pred EEEecCChHHH
Q psy10573 130 VIQSCWTKEEY 140 (206)
Q Consensus 130 ~i~~~~~~~~~ 140 (206)
+|+...+...-
T Consensus 71 ~VIn~~p~~~~ 81 (389)
T COG1748 71 LVINAAPPFVD 81 (389)
T ss_pred EEEEeCCchhh
Confidence 88887665443
No 423
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=83.26 E-value=21 Score=28.20 Aligned_cols=113 Identities=19% Similarity=0.104 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~ 111 (206)
..|...+..++.+.. +.++.. |..-+||--++..+.+.- -++..+|.-+.-....++++.. ..++++.
T Consensus 72 ~lpa~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~q---DRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~ 139 (279)
T COG2961 72 DLPAELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQ---DRLVLTELHPSDAPLLRNNFAG-------DRRVRVL 139 (279)
T ss_pred CchHHHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchh---ceeeeeecCccHHHHHHHHhCC-------CcceEEE
Confidence 346667777777753 555555 888899988888887643 3899999999999999988864 4689999
Q ss_pred Ecc-c---ccccccCCCCCCeeEEEecCChHH------HHHHHHhccc--CCcEEEEEec
Q psy10573 112 AYF-W---LRHLLLTNPHGSTRVIQSCWTKEE------YNSWLLDQLV--PGGRMVMPVG 159 (206)
Q Consensus 112 ~~d-~---~~~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~--~gG~l~~~~~ 159 (206)
.+| + ....| |.+.=-+|+++++++. +.+.+.+.++ ++|+..+.-+
T Consensus 140 ~~DG~~~l~a~LP---P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP 196 (279)
T COG2961 140 RGDGFLALKAHLP---PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP 196 (279)
T ss_pred ecCcHHHHhhhCC---CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe
Confidence 999 2 12222 2233378888888743 4444444443 5666655544
No 424
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.23 E-value=8.4 Score=30.33 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=39.1
Q ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEEecCChHH---HHH
Q psy10573 66 ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEE---YNS 142 (206)
Q Consensus 66 ~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~~~---~~~ 142 (206)
..+.+. ++..+|+++|.++...+.+.+.-. +.-...+....... |+|+...+... +++
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g~-----------~~~~~~~~~~~~~~-------DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALELGI-----------IDEASTDIEAVEDA-------DLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHHTTS-----------SSEEESHHHHGGCC-------SEEEE-S-HHHHHHHHH
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHHCCC-----------eeeccCCHhHhcCC-------CEEEEcCCHHHHHHHHH
Confidence 444443 466799999999999888864311 11111111111223 99988877654 445
Q ss_pred HHHhcccCCcEEEEE
Q psy10573 143 WLLDQLVPGGRMVMP 157 (206)
Q Consensus 143 ~~~~~L~~gG~l~~~ 157 (206)
++...+++|+++.=.
T Consensus 64 ~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 64 EIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHCGS-TTSEEEE-
T ss_pred HhhhhcCCCcEEEEe
Confidence 666666677655433
No 425
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=82.73 E-value=23 Score=28.62 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cc-c---cc
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WL-R---HL 119 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~-~---~~ 119 (206)
+.++..||-.|+|. |..+..+++..+. ..+++++.++...+.+++.-. ..++..+ .. . ..
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~g~-----------~~~i~~~~~~~~~~~~~~~ 226 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAMGA-----------DIVVDPAADSPFAAWAAEL 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcCC-----------cEEEcCCCcCHHHHHHHHH
Confidence 57788888777653 5555666666542 247788888887777764211 1111111 00 0 00
Q ss_pred ccCCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.. ...+.+|+++....-......+.+.++++|+++....
T Consensus 227 ~~-~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 227 AR-AGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred HH-hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 00 1334579998754433456777888999999886643
No 426
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=82.53 E-value=14 Score=25.82 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc-cccccccCCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF-WLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~ 127 (206)
.+.+++-+|+|- |......+...+. .+++.+..+.+..+...+.+.. .++.++..+ .... -..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~--------~~~~~~~~~~~~~~------~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG--------VNIEAIPLEDLEEA------LQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG--------CSEEEEEGGGHCHH------HHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc--------cccceeeHHHHHHH------Hhh
Confidence 578999999973 4444444333333 2699999998776666665522 346666554 1110 123
Q ss_pred eeEEEecCChH
Q psy10573 128 TRVIQSCWTKE 138 (206)
Q Consensus 128 ~D~i~~~~~~~ 138 (206)
+|+|+...+..
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 49999876654
No 427
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=82.38 E-value=8.8 Score=30.88 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=53.7
Q ss_pred CCeEEE-Eccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE---cccccc-cccCCC
Q psy10573 51 GARILD-IGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YFWLRH-LLLTNP 124 (206)
Q Consensus 51 ~~~vLD-lG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~---~d~~~~-~~~~~~ 124 (206)
+..++- .|+| .|..+..+++..+ .++++++.++...+.+++. .. -.++. .++... ... .+
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~-g~----------~~~i~~~~~~~~~~v~~~-~~ 209 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKI-GA----------EYVLNSSDPDFLEDLKEL-IA 209 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC----------cEEEECCCccHHHHHHHH-hC
Confidence 344443 2554 3677777777654 4789999898888877652 11 11221 111111 111 12
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...+|+++....-... ....+.++++|+++....
T Consensus 210 ~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 210 KLNATIFFDAVGGGLT-GQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCCCcEEEECCCcHHH-HHHHHhhCCCCEEEEEEe
Confidence 2356999876554433 556788899999987643
No 428
>KOG1198|consensus
Probab=81.30 E-value=13 Score=30.82 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcccC--chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCC
Q psy10573 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNP 124 (206)
Q Consensus 48 ~~~~~~vLDlG~G~--G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 124 (206)
..++..||-+|.++ |.++..+++..+ ...+....+.+..+.+++.=.+ .-+++...|+.+. ..+ -
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd--------~vvdy~~~~~~e~~kk~--~ 222 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGAD--------EVVDYKDENVVELIKKY--T 222 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCc--------EeecCCCHHHHHHHHhh--c
Confidence 67788888887765 566777777664 2455556677788888764322 1122222231111 111 1
Q ss_pred CCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 125 HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 125 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
.+.||+|+....-..........+..|+..++...+.
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 4566999886665444344455556666666665543
No 429
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=80.97 E-value=16 Score=29.28 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccc-ccccccCCCCCCee
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFW-LRHLLLTNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D 129 (206)
.+|+-+|.|. |.......+..+....+++.|.+....+.+.+.-.. . +. ..+. .. .....|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~--------d--~~-~~~~~~~------~~~~aD 66 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI--------D--EL-TVAGLAE------AAAEAD 66 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc--------c--cc-ccchhhh------hcccCC
Confidence 4677788885 554444444445656788999988777777532110 0 00 0010 00 122338
Q ss_pred EEEecCChHH---HHHHHHhcccCCcEEE
Q psy10573 130 VIQSCWTKEE---YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 130 ~i~~~~~~~~---~~~~~~~~L~~gG~l~ 155 (206)
+|+..-+... +++++...|++|.++.
T Consensus 67 ~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 8888777654 4455555666666554
No 430
>KOG1197|consensus
Probab=80.90 E-value=27 Score=27.88 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=60.7
Q ss_pred cCCCCCeEEEE--cccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccc-cccccCC
Q psy10573 47 KIKPGARILDI--GSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL-RHLLLTN 123 (206)
Q Consensus 47 ~~~~~~~vLDl--G~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~ 123 (206)
.+++|..||-- ..|.|.....+++..+ .++++.-.+.+-.+.++++-.. --|.+...|.. .-..+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~--------h~I~y~~eD~v~~V~kiT- 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE--------HPIDYSTEDYVDEVKKIT- 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc--------ceeeccchhHHHHHHhcc-
Confidence 36889887754 3345677777776653 4777777777778888775443 12555555522 122221
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....|+++..-.-.. ++.-+.+||++|.++-.
T Consensus 212 ngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSF 244 (336)
T ss_pred CCCCceeeeccccchh-hHHHHHHhccCceEEEe
Confidence 2334588887655543 35667889999988643
No 431
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=80.29 E-value=1.4 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.8
Q ss_pred HhcccCCcEEEEEecCCC
Q psy10573 145 LDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 145 ~~~L~~gG~l~~~~~~~~ 162 (206)
.+-|.|||+++++..+..
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 456899999999987764
No 432
>KOG0821|consensus
Probab=79.45 E-value=3.6 Score=31.78 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
...-|++||.|.|+.++.+.... ..+...+|.++..+.-.+-
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~ 91 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQM 91 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHH
Confidence 45679999999999999988643 2378888988877655543
No 433
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=79.14 E-value=6.5 Score=28.64 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccc
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 119 (206)
+.+.|.+....+.+|.=.|+|....+..-.-...+.--.+.+|.++.-.. .. ..-..+.++.-+..
T Consensus 57 l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G-------~~----~PGt~ipI~~p~~l--- 122 (160)
T PF08484_consen 57 LREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQG-------KY----LPGTHIPIVSPEEL--- 122 (160)
T ss_dssp HHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTT-------EE-----TTT--EEEEGGG----
T ss_pred HHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcC-------cc----cCCCCCeECCHHHH---
Confidence 33334322356788998999885554322222212223467788762110 00 00013444443311
Q ss_pred ccCCCCCCeeEEEec-CCh-HHHHHHHHhcccCCcEEEEEec
Q psy10573 120 LLTNPHGSTRVIQSC-WTK-EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~-~~~-~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....|.|++- +.. +.+.+.+...++.||.|++..|
T Consensus 123 ----~~~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 123 ----KERKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp -----SS--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred ----hhCCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 23333776553 332 3466777777889999998754
No 434
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.99 E-value=22 Score=27.97 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 51 GARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 51 ~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
..+|+-+|+| .|.++..++.+.|- ++++.||.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEeccc
Confidence 5788889988 59999888777643 4888887655
No 435
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=78.84 E-value=38 Score=28.39 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=39.7
Q ss_pred HHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHh------CCCceEEEEeC----CHHHHHHHHHhhhc
Q psy10573 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA------GPEGRVYGVEH----VMELAESSIKNIDK 97 (206)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~------~~~~~v~~iD~----s~~~~~~a~~~~~~ 97 (206)
..+++.+. -...-+|+|+|.|.|.--..|.+.+ .|.-++|+|+. +...++.+.+++.+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 34445554 2355689999999986555554433 24568999998 77788888877765
No 436
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=78.83 E-value=17 Score=30.09 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCCCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 125 (206)
+.++..||-.|+|. |..+..+++..+. .++++++.++...+.+++.-.. -+.....+.... ... ..
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~~g~~---------~v~~~~~~~~~~i~~~--~~ 241 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAESIGAI---------PIDFSDGDPVEQILGL--EP 241 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCe---------EeccCcccHHHHHHHh--hC
Confidence 56788887788764 6666666765531 2688899888877777642100 010000111110 111 22
Q ss_pred CCeeEEEecCChH-----------HHHHHHHhcccCCcEEEEE
Q psy10573 126 GSTRVIQSCWTKE-----------EYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 126 ~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~l~~~ 157 (206)
+.+|+++....-. ..+..+.+.|+++|.++..
T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 4569888754432 1357778899999998654
No 437
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.78 E-value=26 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=27.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
.+|--+|+|. |......... .+..|+.+|.+++.++.+++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHH
Confidence 4677789986 4333333222 2348999999999888877654
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.23 E-value=14 Score=29.67 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCCC
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~ 127 (206)
.+++++-+|.|. |......+...+ .+|+.++.++.....+.+. ....+.. +..+. -..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~------------g~~~~~~~~l~~~------l~~ 209 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEM------------GLIPFPLNKLEEK------VAE 209 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHC------------CCeeecHHHHHHH------hcc
Confidence 468999999985 444444444443 4899999988654443211 1111111 11111 012
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+|+|+...+..-+.......++++..++-...
T Consensus 210 aDiVint~P~~ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHhCHHHHhcCCCCeEEEEeCc
Confidence 39999876655444566777888765554444
No 439
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=78.17 E-value=20 Score=28.71 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCCCeEEEEccc-CchHHHHHHHHhCCCceEEEEe--CCHHHHHHHHHhhhccCccccCCCceEEEEcccccc-cccCC
Q psy10573 48 IKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVE--HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~ 123 (206)
+.++..||-.|+| .|..+..+++..+ .+++.+. .+++....+++.- . ..+.....++... ... .
T Consensus 162 ~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~~g-~--------~~~~~~~~~~~~~l~~~-~ 229 (306)
T cd08258 162 IRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKELG-A--------DAVNGGEEDLAELVNEI-T 229 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHhC-C--------cccCCCcCCHHHHHHHH-c
Confidence 5677777766654 3556666666654 4666653 3333444444311 0 0010111111111 011 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
+...+|+++....-........+.|+++|.++.....
T Consensus 230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccc
Confidence 3345699987654445667788899999999866443
No 440
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.09 E-value=18 Score=24.26 Aligned_cols=92 Identities=15% Similarity=0.036 Sum_probs=51.4
Q ss_pred eEEEEcccCc-hHHHHHHHHhCCCceEEE-EeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 53 RILDIGSGSG-YLTACLAYMAGPEGRVYG-VEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~G-~~~~~l~~~~~~~~~v~~-iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+|.-+|+|.. ...........+..++.+ +|.+++..+.+.+.+. +. ...|+.+. + .+...|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~-----------~~-~~~~~~~l--l--~~~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG-----------IP-VYTDLEEL--L--ADEDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-----------SE-EESSHHHH--H--HHTTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc-----------cc-chhHHHHH--H--HhhcCCE
Confidence 5667898763 322222222335557764 5999988777755442 22 23331111 1 1224599
Q ss_pred EEecCChHHHHHHHHhcccCCcEEEEEecC
Q psy10573 131 IQSCWTKEEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 131 i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
|++..+...-.+.+..+++.|-.+++.-|-
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPL 95 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSS
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCC
Confidence 988777655556666777777766665443
No 441
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.07 E-value=33 Score=27.35 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCC
Q psy10573 50 PGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHV 84 (206)
Q Consensus 50 ~~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s 84 (206)
.+.+|+-+||| .|..+...+...|- ++++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 35789999998 47777666555432 488888755
No 442
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.87 E-value=32 Score=28.93 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=55.9
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeEEE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQ 132 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~i~ 132 (206)
.|+-++=..|.+++.++. .++ +.+--|--.-...+.+++.++.. ...+++.... ..+ + +.+|+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~-~~~----~~~~ds~~~~~~~~~n~~~n~~~---~~~~~~~~~~----~~~--~-~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFGALSCALAE-HKP----YSIGDSYISELATRENLRLNGID---ESSVKFLDST----ADY--P-QQPGVVL 111 (378)
T ss_pred CEEEEcCchhHHHHHHHh-CCC----CeeehHHHHHHHHHHHHHHcCCC---cccceeeccc----ccc--c-CCCCEEE
Confidence 789999999999999984 323 23322333445566666664321 1234554332 111 2 2359998
Q ss_pred ecCC-----hHHHHHHHHhcccCCcEEEEE
Q psy10573 133 SCWT-----KEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 133 ~~~~-----~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.-.+ +++.+..+...|.+|+.+++-
T Consensus 112 ~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 112 IKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred EEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 8666 455778888999999997643
No 443
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=76.87 E-value=34 Score=26.81 Aligned_cols=97 Identities=24% Similarity=0.257 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-ccc
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~ 121 (206)
+.++..||-.|+ | .|..+..+++..+ ..+++++.+++..+.+++ +.. . .++..+ .... ...
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~--------~--~~~~~~~~~~~~~~~~~ 200 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA-AGA--------D--HVINYRDEDFVERVREI 200 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH-CCC--------C--EEEeCCchhHHHHHHHH
Confidence 567888988884 3 4667777776654 578888888877776643 211 0 111111 1110 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.....+|+++....- .......+.++++|.++....
T Consensus 201 -~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 201 -TGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred -cCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEec
Confidence 123457999876543 456777889999999886643
No 444
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=76.51 E-value=24 Score=31.87 Aligned_cols=116 Identities=22% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEE---EeCCHHH-------HHHHHHhhhccCcccc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG---VEHVMEL-------AESSIKNIDKGNSELL 103 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~---iD~s~~~-------~~~a~~~~~~~~~~~~ 103 (206)
++-.+.+++.+. +.. ...|..|=|+|+.+..+++.. |.++++- .|.+... -..|-..+.
T Consensus 309 HYKlRsIL~~~~--i~~-~d~l~~GDGSGGita~lLR~~-p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g------- 377 (675)
T PF14314_consen 309 HYKLRSILKNLN--IKY-RDALCGGDGSGGITACLLRMN-PTSRGIFNSLLELDGSDLRGSHPSPPSAIMALG------- 377 (675)
T ss_pred hhhHHHHHHhcC--CCc-ceeEEEecCchHHHHHHHHhC-cccceeeeccccccCCCCCCCCCCCcHHHhccC-------
Confidence 344555555554 443 556889999999999999876 6555532 1222111 011111111
Q ss_pred CCCceEEEEcc--ccccccc------------C-CCCCCeeEEEecCChH----------HHHHHHHhcccCCcEEEEEe
Q psy10573 104 DQGRVQFVAYF--WLRHLLL------------T-NPHGSTRVIQSCWTKE----------EYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 104 ~~~~i~~~~~d--~~~~~~~------------~-~~~~~~D~i~~~~~~~----------~~~~~~~~~L~~gG~l~~~~ 158 (206)
...-+++..| |...... . -..-++|+|+++.... .+-+.+..+|.++|.+++-+
T Consensus 378 -~~~~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKT 456 (675)
T PF14314_consen 378 -NDKSRCVNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKT 456 (675)
T ss_pred -cccceeecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEeh
Confidence 1122333333 1111000 0 1233679999987742 13356677889999999998
Q ss_pred cCC
Q psy10573 159 GEP 161 (206)
Q Consensus 159 ~~~ 161 (206)
+..
T Consensus 457 Ylt 459 (675)
T PF14314_consen 457 YLT 459 (675)
T ss_pred hHh
Confidence 864
No 445
>KOG2539|consensus
Probab=76.42 E-value=10 Score=32.59 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCc-cccCCCceEEEEcccccccccCCCCCCe
Q psy10573 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNS-ELLDQGRVQFVAYFWLRHLLLTNPHGST 128 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 128 (206)
...++|+|+|.|.....+..... ..-.++.||.+..+.....+.+..... ...-..++.+.. ...+. .....|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r----~~~pi-~~~~~y 275 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR----QRLPI-DIKNGY 275 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc----ccCCC-Ccccce
Confidence 35688888886654444433221 233678999999999999888765110 000001111111 11111 234557
Q ss_pred eEEEecCChHH---------HH-HHHHhcccCCcEEEEEecCCC
Q psy10573 129 RVIQSCWTKEE---------YN-SWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 129 D~i~~~~~~~~---------~~-~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+|++...+.. ++ +.+.+..++|+.+++...+.+
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999776543 22 445666788888887766654
No 446
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=76.09 E-value=5.5 Score=29.35 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=42.9
Q ss_pred HHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 40 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
|..++..+.+-+..-+|+|+..|.+.-..++.. ..++++++|+-.++-...+-+.+
T Consensus 69 mrhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvq 124 (286)
T PF05575_consen 69 MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQ 124 (286)
T ss_pred hhHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeee
Confidence 445555566778899999999999988888777 56699999987777666655544
No 447
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.96 E-value=29 Score=27.91 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=45.8
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.+|.-+|+|. |..........+...+|+++|.+++..+.+++.- -......+..+. . ...|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g-----------~~~~~~~~~~~~--~----~~aDv 69 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG-----------LGDRVTTSAAEA--V----KGADL 69 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC-----------CCceecCCHHHH--h----cCCCE
Confidence 5688889886 4333222222222237999999998777665310 000111111110 1 12388
Q ss_pred EEecCChHH---HHHHHHhcccCCcEEE
Q psy10573 131 IQSCWTKEE---YNSWLLDQLVPGGRMV 155 (206)
Q Consensus 131 i~~~~~~~~---~~~~~~~~L~~gG~l~ 155 (206)
|+...+... +++.+...++++..++
T Consensus 70 Viiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 70 VILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred EEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888766543 4455556677777554
No 448
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.91 E-value=22 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred CCeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 51 GARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 51 ~~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
..+|+-+||| .|......+...|- ++++.+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 5689999998 47776666555543 4888887543
No 449
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.83 E-value=5.9 Score=28.91 Aligned_cols=45 Identities=22% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 50 ~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
++.+|+-+|.|. |..+..++..++ .+++.+|..+...+..+....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~ 64 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGA 64 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccC
Confidence 457889999996 777888887775 489999999888777765543
No 450
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.82 E-value=27 Score=27.84 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=51.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-------Cc-ccc----CCCceEEEEcccccc
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------NS-ELL----DQGRVQFVAYFWLRH 118 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~-~~~----~~~~i~~~~~d~~~~ 118 (206)
.+|.-+|+|. |......... .+..|+.+|.+++.++.+.+..... +. ... ...++.+. .|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH-
Confidence 4677789986 3333222222 2348999999999887765443220 00 000 00112221 12111
Q ss_pred cccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGE 160 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~ 160 (206)
. ...|+|+..-+- ..+++.+...++++.+++..+.+
T Consensus 81 --~----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 --L----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --h----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1 123888776532 34567778888888877644444
No 451
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=75.64 E-value=39 Score=26.86 Aligned_cols=97 Identities=24% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc---ccccc-ccc
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY---FWLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~~~ 121 (206)
+.++..|+-.|+ +.|..+..+++..+ .+++.++.++...+.+++ +.. . .++.. +.... ...
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~g~---------~-~~~~~~~~~~~~~~~~~ 206 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA-LGA---------D-VAVDYTRPDWPDQVREA 206 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCC---------C-EEEecCCccHHHHHHHH
Confidence 577888888874 34677777777654 478888888877776643 211 1 11111 11111 111
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+...+|+++....-.. .....+.|+++|.++....
T Consensus 207 -~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 207 -LGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGW 242 (324)
T ss_pred -cCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEec
Confidence 12335799997655443 4778889999999887644
No 452
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=75.33 E-value=36 Score=27.74 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=27.0
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
+.+.+|.-+|+|. |......+...+-...+..+|++++.+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~ 44 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKA 44 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchh
Confidence 4457899999986 666665554433223789999977654
No 453
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.18 E-value=23 Score=28.13 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=52.1
Q ss_pred eEEEEcccC-c-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-------cC-cccc----CCCceEEEEcccccc
Q psy10573 53 RILDIGSGS-G-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-------GN-SELL----DQGRVQFVAYFWLRH 118 (206)
Q Consensus 53 ~vLDlG~G~-G-~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~-~~~~----~~~~i~~~~~d~~~~ 118 (206)
+|--+|+|. | .++..++.. +.+|+++|++++.++.+++.+.. .+ .... ...++.+ ..|....
T Consensus 5 kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh
Confidence 567788885 3 333333332 23899999999988765533221 10 0000 0012222 1221111
Q ss_pred cccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 119 LLLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 119 ~~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+..|+|+....- ..+++++.+.++++.++...+.+.
T Consensus 81 -------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 81 -------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred -------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 223888876541 356777888888888775545443
No 454
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.09 E-value=19 Score=27.67 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+... ..++.++..|..+....
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 3677887786554 444444333 24458888898887766665555431 13566777773221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 001145688887654
No 455
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.03 E-value=23 Score=28.22 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=26.6
Q ss_pred eEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy10573 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (206)
Q Consensus 53 ~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~ 95 (206)
+|.-+|+|. |.-....... .+..|+.+|.+++.++.+.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHH
Confidence 577788875 4333322222 2348999999999988876543
No 456
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=74.92 E-value=21 Score=28.43 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc---cccc-ccc
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF---WLRH-LLL 121 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~~~ 121 (206)
+.++..||-.|+ | .|..+..+++..+ .+++.+..+++..+.+++ +.. . .++..+ +... ...
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~g~--------~--~~~~~~~~~~~~~i~~~ 203 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA-LGI--------G--PVVSTEQPGWQDKVREA 203 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh-cCC--------C--EEEcCCCchHHHHHHHH
Confidence 677888887775 3 4777777777765 467777656665555543 211 0 111111 1110 011
Q ss_pred CCCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 122 TNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++....-. ....+.+.|+++|+++...
T Consensus 204 -~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 204 -AGGAPISVALDSVGGK-LAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred -hCCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEEe
Confidence 1233569998755543 4577789999999998664
No 457
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=74.88 E-value=27 Score=27.78 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=55.7
Q ss_pred CCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccc-cccccCCCCC
Q psy10573 51 GARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWL-RHLLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~-~~~~~~~~~~ 126 (206)
+.+|+-.|+ | .|..+..+++..+ .+++.++.+++..+.+++ +.. . .++.. +.. .... ....+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~--------~--~~~~~~~~~~~~~~-~~~~~ 212 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKS-LGA--------S--EVLDREDLLDESKK-PLLKA 212 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh-cCC--------c--EEEcchhHHHHHHH-HhcCC
Confidence 457887775 3 4666677777654 478889988887777754 211 1 11111 100 0000 01333
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+|+++....- .......+.++++|+++....
T Consensus 213 ~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 213 RWAGAIDTVGG-DVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred CccEEEECCch-HHHHHHHHhhcCCCEEEEEec
Confidence 47988865544 456778889999999886643
No 458
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.73 E-value=22 Score=27.39 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=32.5
Q ss_pred CeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 52 ARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
+.+|-.|++.| .+..+++.+ ..+.+++.++.++...+...+.+... ..++.++..|
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D 58 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMD 58 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEec
Confidence 46676666544 444443332 23458888888877666655544321 1357777777
No 459
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=74.60 E-value=44 Score=27.07 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-ccccccccCCCCC
Q psy10573 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLRHLLLTNPHG 126 (206)
Q Consensus 49 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~ 126 (206)
.++.+|+-+|+|. |......+...+ ..+++.++.+++......+.+.. ..+.. +..+. . .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~~~--l----~ 237 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGG-----------NAVPLDELLEL--L----N 237 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCC-----------eEEeHHHHHHH--H----h
Confidence 3688999999985 555444443322 23788999988755433333211 22221 21111 0 1
Q ss_pred CeeEEEecCChHHH---HHHHHhcccCCcEEEEEecCCC
Q psy10573 127 STRVIQSCWTKEEY---NSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 127 ~~D~i~~~~~~~~~---~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
..|+|+...+.+.. ..........++.+++-...+.
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 23999887665443 3333333323566766655443
No 460
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.49 E-value=29 Score=27.57 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=24.8
Q ss_pred eEEEEcccC-c-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy10573 53 RILDIGSGS-G-YLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (206)
Q Consensus 53 ~vLDlG~G~-G-~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~ 93 (206)
+|.-+|+|. | .++..+.+. +.+|+++|.++...+.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH
Confidence 456678875 3 344444432 2389999999988777654
No 461
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.47 E-value=22 Score=27.29 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=44.0
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++++|-.|++ |..+..+++.+ ..+.+|+.++.++...+...+.+... ..++.++..|..+....
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 35678877764 44444444433 23458999998887666555544331 13577777773221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-..+.+|+++.+..
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 001135688887654
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.42 E-value=53 Score=27.87 Aligned_cols=92 Identities=15% Similarity=0.050 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEE
Q psy10573 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (206)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~ 110 (206)
..+.....+.+.+........+++-+|+| .++..+++.+. .+..++.+|.+++.++..++.. ..+.+
T Consensus 212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~ 279 (453)
T PRK09496 212 GAREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLV 279 (453)
T ss_pred eCHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeE
Confidence 34555666666665434456788888885 45544544432 2348999999999888776543 23567
Q ss_pred EEccccccccc-CCCCCCeeEEEecC
Q psy10573 111 VAYFWLRHLLL-TNPHGSTRVIQSCW 135 (206)
Q Consensus 111 ~~~d~~~~~~~-~~~~~~~D~i~~~~ 135 (206)
+.+|..+...+ ...-..+|.+++..
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECC
Confidence 77773222111 01223457776643
No 463
>PRK06701 short chain dehydrogenase; Provisional
Probab=74.29 E-value=42 Score=26.65 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=30.2
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHH-HHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
++++|-.|++ |.++..+++.+ ..+.+++.++.++. ..+.....+... ..++.++..|
T Consensus 46 ~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D 104 (290)
T PRK06701 46 GKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGD 104 (290)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEcc
Confidence 5678877754 44455554433 23457888876642 233333333221 1356777777
No 464
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=73.63 E-value=40 Score=27.24 Aligned_cols=94 Identities=22% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc--cccccccCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF--WLRHLLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d--~~~~~~~~~ 123 (206)
+.++.+||-.|+ | .|..+..+++..+ +++++++.+. ..+.+++ +. . . .+...+ ....... .
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~-~g--------~-~-~~~~~~~~~~~~~~~-~ 239 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA-LG--------A-D-TVILRDAPLLADAKA-L 239 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh-cC--------C-e-EEEeCCCccHHHHHh-h
Confidence 678889998887 3 3667677777654 4777777544 4444432 11 1 1 111111 0000111 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
....+|+++....- ...+...+.++++|.++..
T Consensus 240 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 240 GGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 33457999976553 4567788999999998764
No 465
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.07 E-value=37 Score=27.03 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--c-cccccccC
Q psy10573 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--F-WLRHLLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d-~~~~~~~~ 122 (206)
+.++.+|+-.|+ +.|..+..+++..+ .+++.+..+++..+.+++ +.. ...+... + ......-.
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~g~---------~~~~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK-LAA---------IILIRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-cCC---------cEEEecCChhHHHHHHHHH
Confidence 567888888874 35777777777654 366667778877777754 211 1111111 1 11100000
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+...+|+++.... ........+.|+++|.++...
T Consensus 206 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 206 TGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhccCCeEEEEe
Confidence 13345799997654 346677888999999988653
No 466
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=72.89 E-value=4.2 Score=31.69 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
+...+.+.+... +..+++|.-||+|..+..+.. +...++.-|+++..+...+..+.
T Consensus 8 l~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S---S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHHHHHh
Confidence 344455554311 678999999999999988765 23389999999987776664443
No 467
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=72.80 E-value=53 Score=27.16 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCc-eEEEEcc--cccc-cccC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVAYF--WLRH-LLLT 122 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d--~~~~-~~~~ 122 (206)
+.++.+||-.|+|. |..+..+++..+. .+++.++.++...+.+++ +.. .. +.....+ .... ...
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~~-lGa--------~~~i~~~~~~~~~~~~v~~~- 256 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAKE-LGA--------TECINPQDYKKPIQEVLTEM- 256 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-cCC--------ceEecccccchhHHHHHHHH-
Confidence 67788888888764 5555666665532 278999988888888754 211 11 1111000 0010 111
Q ss_pred CCCCCeeEEEecCChHHHHHH-HHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSW-LLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~-~~~~L~~gG~l~~~~~ 159 (206)
..+.+|+++....-...+.. +...++++|+++....
T Consensus 257 -~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 257 -TDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred -hCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEcc
Confidence 12357999886554444444 3344567888876643
No 468
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=72.80 E-value=39 Score=26.38 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=51.9
Q ss_pred CeEEEEccc-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCCeeE
Q psy10573 52 ARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 52 ~~vLDlG~G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
.++|-+|+- +|.+....+. ..++|+.+|+.|.+.+... +++.|...-.. ....+|+
T Consensus 43 k~~lI~G~YltG~~iA~~L~---~~~eV~lvDI~p~lk~ll~-------------~~i~F~~~~~~-------~~~~~Dl 99 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALS---KKCEVTLVDIHPHLKELLN-------------ENIKFMEFRNG-------LEGNPDL 99 (252)
T ss_pred ceEEEEEEEeehHHHHHHhc---cCceEEEEeCcHHHHHHhc-------------CCCceeeccCC-------CCCCCCE
Confidence 488989987 5666555443 3349999999997766652 35666533211 1223499
Q ss_pred EEecCChHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 131 IQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 131 i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
|+--.++-.+-....+.+.|+ .+++.-|...
T Consensus 100 IID~TGlGGv~~~~Ls~~~p~-v~IVEdP~~~ 130 (252)
T PF06690_consen 100 IIDTTGLGGVDPDFLSKFNPK-VFIVEDPKGD 130 (252)
T ss_pred EEECCCCCCCCHHHHhccCCC-EEEEECCCcc
Confidence 987666544434445555644 4555655544
No 469
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=72.48 E-value=22 Score=22.53 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=20.4
Q ss_pred CCCCeEEEEcccCchHHH-HHHHHhCCCceEEEEeC
Q psy10573 49 KPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEH 83 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~-~l~~~~~~~~~v~~iD~ 83 (206)
...++||-+||.+|+-.. .++..++.++..++|-.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 445899999999996543 34444456667777743
No 470
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=72.30 E-value=46 Score=26.65 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc--ccccccccCCCCC
Q psy10573 51 GARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY--FWLRHLLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~ 126 (206)
+.+|+-.|+ | .|..+..+++..+. .++++++.++...+.+++ +.. . .++.. +...... ....+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~g~--------~--~~~~~~~~~~~~i~-~~~~~ 216 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE-LGA--------D--HVINHHQDLAEQLE-ALGIE 216 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh-cCC--------c--EEEeCCccHHHHHH-hhCCC
Confidence 788888874 3 46666777776541 488999888877777743 211 0 11111 1111001 01234
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.+|+++....-......+.+.++++|.++...
T Consensus 217 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 217 PVDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred CCCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 57999876554456778889999999998753
No 471
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.18 E-value=45 Score=27.31 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=52.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc-------cCcc-ccCCCceEEEEcccccccccC
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-------GNSE-LLDQGRVQFVAYFWLRHLLLT 122 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~~~-~~~~~~i~~~~~d~~~~~~~~ 122 (206)
.+|--||+|+ |.-....... .+..|+.+|.+++..+.+++.+.. .+.. .....++++.. +..+. .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v- 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--V- 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--h-
Confidence 5788899986 4333333222 334899999999887766554432 1000 00011223221 21111 0
Q ss_pred CCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEec
Q psy10573 123 NPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
...|+|+...+- ..++.++.+.++|+.+|..++.
T Consensus 82 ---~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 223888876442 3466788888888875544444
No 472
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.14 E-value=28 Score=26.54 Aligned_cols=58 Identities=14% Similarity=-0.005 Sum_probs=33.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.++|-.|++ |..+..+++.+ ..+.+++.++.++...+.+...+... ..++.++..|
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D 62 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAAN 62 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcC
Confidence 35678877753 44444444333 23458888998876655554444321 1356677777
No 473
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.72 E-value=28 Score=26.89 Aligned_cols=75 Identities=12% Similarity=-0.049 Sum_probs=41.9
Q ss_pred eEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-----CC-C-
Q psy10573 53 RILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-----TN-P- 124 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~-~- 124 (206)
++|-.|++ |..+..+++.+ ..+.+|+.++.++..++........ .++.++..|..+.... .. .
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA--------GNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 56666654 55555554433 2345888889888766665443321 3577888883321110 00 0
Q ss_pred -CCCeeEEEecCC
Q psy10573 125 -HGSTRVIQSCWT 136 (206)
Q Consensus 125 -~~~~D~i~~~~~ 136 (206)
.+.+|+++.+..
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 346698887654
No 474
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.70 E-value=9.7 Score=30.32 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=31.1
Q ss_pred ccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCH
Q psy10573 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85 (206)
Q Consensus 46 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~ 85 (206)
+++.++...+|+|+..|+++-.+.++. -.||+||..+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ 243 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP 243 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcc---eEEEEeccch
Confidence 346789999999999999999998753 3899999665
No 475
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.64 E-value=24 Score=28.87 Aligned_cols=80 Identities=13% Similarity=-0.041 Sum_probs=44.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------ 122 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------ 122 (206)
.++.+|-.|++ |..+..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+.....
T Consensus 6 ~~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 35677766664 44444444433 244689999998887776665554311 24666677732211100
Q ss_pred -CCCCCeeEEEecCC
Q psy10573 123 -NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 -~~~~~~D~i~~~~~ 136 (206)
-..+.+|+++.+..
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 01245699888765
No 476
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.64 E-value=32 Score=26.38 Aligned_cols=80 Identities=16% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-------
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL------- 121 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------- 121 (206)
.++++|-.|+ +|..+..+++.+ ..+.+|+.++.++...+...+.+... ..++.++..|..+....
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCHHHHHHHHHHH
Confidence 4567886665 444555444433 24558999998887665555444321 13567778773221110
Q ss_pred CCCCCCeeEEEecCC
Q psy10573 122 TNPHGSTRVIQSCWT 136 (206)
Q Consensus 122 ~~~~~~~D~i~~~~~ 136 (206)
.-.-+..|+++.+..
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 001135688877653
No 477
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=71.29 E-value=50 Score=26.27 Aligned_cols=95 Identities=16% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCCCC-eEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc-cccc-ccccC
Q psy10573 48 IKPGA-RILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY-FWLR-HLLLT 122 (206)
Q Consensus 48 ~~~~~-~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~-~~~~~ 122 (206)
+.++. +|+-.|+ | .|..+..+++..+ .+++.+..+++..+.+++. .. . .++.. +... ....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~~-g~--------~--~~~~~~~~~~~~~~~- 207 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKEL-GA--------S--EVIDREDLSPPGKPL- 207 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHhc-CC--------c--EEEccccHHHHHHHh-
Confidence 56677 8888886 4 3677777777654 4677776666665666432 10 0 11111 1000 0011
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
..+.+|+++....-+ ....+.+.|+++|+++...
T Consensus 208 -~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g 241 (323)
T TIGR02823 208 -EKERWAGAVDTVGGH-TLANVLAQLKYGGAVAACG 241 (323)
T ss_pred -cCCCceEEEECccHH-HHHHHHHHhCCCCEEEEEc
Confidence 223479888765544 4577888999999998764
No 478
>PRK10637 cysG siroheme synthase; Provisional
Probab=70.90 E-value=50 Score=28.43 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred CCCeEEEEcccCchHHHHHHHHhCCCceEEEE--eCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.+.+||-+|.|.=..-. +......+++|+.+ +++++....+. ..+++++..++.. ..+ ..
T Consensus 11 ~~~~vlvvGgG~vA~rk-~~~ll~~ga~v~visp~~~~~~~~l~~------------~~~i~~~~~~~~~-~dl----~~ 72 (457)
T PRK10637 11 RDRDCLLVGGGDVAERK-ARLLLDAGARLTVNALAFIPQFTAWAD------------AGMLTLVEGPFDE-SLL----DT 72 (457)
T ss_pred CCCEEEEECCCHHHHHH-HHHHHHCCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCCh-HHh----CC
Confidence 57899999998633321 11112234577766 66665544332 1467777766321 111 12
Q ss_pred eeEEEecCChHHHHHHHHhcccCCcEEEEEecCC
Q psy10573 128 TRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 128 ~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
+++|++...-+.+.+++.+..+..|+++-.+-.+
T Consensus 73 ~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~ 106 (457)
T PRK10637 73 CWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAP 106 (457)
T ss_pred CEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCc
Confidence 3888888777788888888888888887665543
No 479
>PRK07806 short chain dehydrogenase; Provisional
Probab=70.85 E-value=44 Score=25.44 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCH-HHHHHHHHhhhccCccccCCCceEEEEcc
Q psy10573 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVM-ELAESSIKNIDKGNSELLDQGRVQFVAYF 114 (206)
Q Consensus 50 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~~~~~i~~~~~d 114 (206)
.+.++|-.|++ |..+..+++.+ ..+.+|+++..+. ...+.....+... ..++.++..|
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D 64 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGAD 64 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcC
Confidence 35678877754 44555554433 2344787776653 2233332222221 1346677777
No 480
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.58 E-value=16 Score=30.65 Aligned_cols=56 Identities=20% Similarity=0.036 Sum_probs=41.2
Q ss_pred CceEEEEcccccccccCCCCCCeeEEEecCCh--------HHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 106 GRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK--------EEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 106 ~~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.++++++++..+... ..+++++|.++..... ....+++.+.++|||+++.-.....
T Consensus 275 drv~i~t~si~~~L~-~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR-RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHH-hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 578898888544333 2378899988775554 3466888999999999998877644
No 481
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=70.16 E-value=41 Score=27.14 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=51.3
Q ss_pred CeEEEEcccC-ch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--hhccCccccCCCceEEEEcccccccccCCCCCC
Q psy10573 52 ARILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKN--IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS 127 (206)
Q Consensus 52 ~~vLDlG~G~-G~-~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 127 (206)
.+|+-+|+|. |. ++..|++ .+ ..|+.++.+++.++..++. +... .......+...... +- +.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G--~~V~lv~r~~~~~~~i~~~~Gl~i~-----~~g~~~~~~~~~~~--~~--~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AG--LPVRLILRDRQRLAAYQQAGGLTLV-----EQGQASLYAIPAET--AD--AAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CC--CCeEEEEechHHHHHHhhcCCeEEe-----eCCcceeeccCCCC--cc--cccc
Confidence 3688899996 54 4444443 32 3799999887666655432 1110 00111111100000 00 1235
Q ss_pred eeEEEecCC---hHHHHHHHHhcccCCcEEEEEecCCC
Q psy10573 128 TRVIQSCWT---KEEYNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 128 ~D~i~~~~~---~~~~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
+|+|++..= ....++.+...+.++..++....+-.
T Consensus 71 ~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 71 IHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred cCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 698877433 34456677777888886665554433
No 482
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.15 E-value=37 Score=24.31 Aligned_cols=98 Identities=13% Similarity=-0.029 Sum_probs=49.8
Q ss_pred eEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC-cccc-CCCceEEEEcccccccccCCCCCCeeE
Q psy10573 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELL-DQGRVQFVAYFWLRHLLLTNPHGSTRV 130 (206)
Q Consensus 53 ~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~D~ 130 (206)
+|.-+|+|++..+....-.. .+-+|+....+++.++..++.-.... .... ...++.+ ..|..+... ..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~------~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE------DADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT------T-SE
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC------cccE
Confidence 35668888755443332211 22488899999888777766433211 0000 1123433 334222111 1288
Q ss_pred EEecCCh---HHHHHHHHhcccCCcEEEEEe
Q psy10573 131 IQSCWTK---EEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 131 i~~~~~~---~~~~~~~~~~L~~gG~l~~~~ 158 (206)
|+..-+. ..+++++...++++-.++..+
T Consensus 73 IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 73 IIIAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp EEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred EEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 8775443 446777778887766666543
No 483
>PRK06223 malate dehydrogenase; Reviewed
Probab=70.13 E-value=52 Score=26.45 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=24.6
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHH
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELA 88 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~ 88 (206)
.+|.-+|+|. |..........+-. .++.+|++++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh
Confidence 4677899987 66655554433223 899999988764
No 484
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.06 E-value=45 Score=25.15 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCC
Q psy10573 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV 84 (206)
Q Consensus 51 ~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s 84 (206)
..+|+-+|||. |......+...|- ++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 57899999984 6555444444433 388888866
No 485
>KOG1209|consensus
Probab=69.99 E-value=11 Score=29.14 Aligned_cols=74 Identities=18% Similarity=0.096 Sum_probs=45.9
Q ss_pred CCCCeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHH-HHHHHHHhhhccCccccCCCceEEEEcccc----------
Q psy10573 49 KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVAYFWL---------- 116 (206)
Q Consensus 49 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~---------- 116 (206)
.....||-.||..|..+-.+++.+. .++.|++.-.+-+ +.+.+.+ ..+.....|..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~------------~gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ------------FGLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh------------hCCeeEEeccCChHHHHHHHH
Confidence 3457889999999999988887653 5678888754433 3444322 12333333311
Q ss_pred cccccCCCCCCeeEEEecCC
Q psy10573 117 RHLLLTNPHGSTRVIQSCWT 136 (206)
Q Consensus 117 ~~~~~~~~~~~~D~i~~~~~ 136 (206)
+...+ ++|+.|+.+.+.+
T Consensus 73 evr~~--~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 73 EVRAN--PDGKLDLLYNNAG 90 (289)
T ss_pred HHhhC--CCCceEEEEcCCC
Confidence 11223 7889999988765
No 486
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.97 E-value=34 Score=27.36 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=29.1
Q ss_pred CeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 52 ~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
.+|--||+|+ |.-....... .+..|+.+|.+++.++.+.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHH
Confidence 4677889986 4333333222 33489999999999888776644
No 487
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=69.80 E-value=61 Score=26.90 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcc-CccccCCCceEEE-------------
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFV------------- 111 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~i~~~------------- 111 (206)
+.++.+|+-.|+ | .|..+..+++..+ .+++.++.+++..+.+++ +... -.+....+.....
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-LGAEGVINRRDFDHWGVLPDVNSEAYTAWTK 267 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-cCCCEEEcccccccccccccccchhhhhhhh
Confidence 567889998886 3 3666677777654 477888888888888866 3210 0000000000000
Q ss_pred Ec-ccccc-cccCCCCC-CeeEEEecCChHHHHHHHHhcccCCcEEEEEe
Q psy10573 112 AY-FWLRH-LLLTNPHG-STRVIQSCWTKEEYNSWLLDQLVPGGRMVMPV 158 (206)
Q Consensus 112 ~~-d~~~~-~~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~ 158 (206)
.. .+... ... .+.. .+|+++....- ..+....+.++++|+++...
T Consensus 268 ~~~~~~~~v~~l-~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 268 EARRFGKAIWDI-LGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred ccchHHHHHHHH-hCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEEc
Confidence 00 00000 001 1222 57999876554 45677789999999998753
No 488
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=69.41 E-value=25 Score=27.60 Aligned_cols=111 Identities=20% Similarity=0.102 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhccCCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEc
Q psy10573 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAY 113 (206)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 113 (206)
|......++.+... .++.. +..=.||-.++..+.+. .-+.+.+|+.+.-.+..++++.. ..++.+...
T Consensus 43 p~~l~~yl~~v~~~-n~~~~-l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~ 110 (245)
T PF04378_consen 43 PPALQPYLDAVRAL-NPDGE-LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHR 110 (245)
T ss_dssp -GGGHHHHHHHHHH-SSSSS---EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S
T ss_pred hHHHHHHHHHHHHh-ccCCC-cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc-------CCccEEEeC
Confidence 44455555555422 22222 66777777777777653 33999999999999999887764 358999999
Q ss_pred cc----ccccccCCCCCCeeEEEecCChH------HHHHHHHhccc--CCcEEEEEec
Q psy10573 114 FW----LRHLLLTNPHGSTRVIQSCWTKE------EYNSWLLDQLV--PGGRMVMPVG 159 (206)
Q Consensus 114 d~----~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~L~--~gG~l~~~~~ 159 (206)
|. ....| |...=-+|+++++++ .+.+.+.+.++ +.|++++.-+
T Consensus 111 DG~~~l~allP---P~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 111 DGYEGLKALLP---PPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp -HHHHHHHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred chhhhhhhhCC---CCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 91 11122 222337888888764 24444444443 5777665544
No 489
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=69.38 E-value=52 Score=25.65 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++.+|+-.|+ | .|..+..+++..+ .+++.++.++ ..+.+++ +.. ..++......... ....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~-~g~----------~~~~~~~~~~~~~-~~~~ 206 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS-LGA----------DEVIDYTKGDFER-AAAP 206 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH-cCC----------CEEEeCCCCchhh-ccCC
Confidence 567888988886 3 4666666666543 4777777655 4444432 110 1111111000000 0133
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-. ......+.++++|.++....
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEEEcC
Confidence 4569998755544 55777888999999876543
No 490
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.29 E-value=56 Score=25.99 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce-EEEE-cccccc-cccCC
Q psy10573 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVA-YFWLRH-LLLTN 123 (206)
Q Consensus 48 ~~~~~~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i-~~~~-~d~~~~-~~~~~ 123 (206)
+.++..|+-.|+|. |..+..+++..+ .+++.++.++...+.+++. .. ..+ .... .+.... ... .
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~-g~--------~~~~~~~~~~~~~~~~~~~-~ 225 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAAG--ARVIATSSSDEKLERAKAL-GA--------DHVINYRTTPDWGEEVLKL-T 225 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc-CC--------CEEEcCCcccCHHHHHHHH-c
Confidence 56777777666553 555555555543 5788888888877777652 11 011 1001 111111 111 1
Q ss_pred CCCCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 124 PHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 124 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
+...+|+++.... ........+.|+++|.++....
T Consensus 226 ~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~~g~ 260 (336)
T cd08276 226 GGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISLIGF 260 (336)
T ss_pred CCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEEEcc
Confidence 2345799987654 4456777889999999886644
No 491
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=69.07 E-value=14 Score=29.83 Aligned_cols=78 Identities=9% Similarity=-0.032 Sum_probs=41.1
Q ss_pred EcccCchHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCce----EEEEccccccccc--CCCCCC
Q psy10573 57 IGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV----QFVAYFWLRHLLL--TNPHGS 127 (206)
Q Consensus 57 lG~G~G~~~~~l~~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i----~~~~~d~~~~~~~--~~~~~~ 127 (206)
+-.|.|..+..+++++ +| .+++.+|.++..+-..+..+.... ..+++ ..+.+|..+.... .+....
T Consensus 3 VTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred EEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccCHHHHHHHHhhcC
Confidence 4456788888887765 23 389999999998888888775311 01233 3457774332111 125556
Q ss_pred eeEEEecCChHH
Q psy10573 128 TRVIQSCWTKEE 139 (206)
Q Consensus 128 ~D~i~~~~~~~~ 139 (206)
.|+|+..++..+
T Consensus 78 pdiVfHaAA~Kh 89 (293)
T PF02719_consen 78 PDIVFHAAALKH 89 (293)
T ss_dssp -SEEEE------
T ss_pred CCEEEEChhcCC
Confidence 799999888654
No 492
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=69.00 E-value=16 Score=27.08 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=51.8
Q ss_pred eEEEEcccC-chHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccC---ccc--c-------CCCceEEEEccccccc
Q psy10573 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN---SEL--L-------DQGRVQFVAYFWLRHL 119 (206)
Q Consensus 53 ~vLDlG~G~-G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~--~-------~~~~i~~~~~d~~~~~ 119 (206)
+|--+|+|+ |.....+.... +.+|+.+|.+++.++.+++.+...- .+. . ...++.+. .|.....
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHHh
Confidence 355688886 53333333332 3499999999999888877765400 000 0 01233322 2322222
Q ss_pred ccCCCCCCeeEEEecCCh-----HHHHHHHHhcccCCcEEEEEecCC
Q psy10573 120 LLTNPHGSTRVIQSCWTK-----EEYNSWLLDQLVPGGRMVMPVGEP 161 (206)
Q Consensus 120 ~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~l~~~~~~~ 161 (206)
..|+|+-.-+- ..++.++.+.+.|+.+|...+.+-
T Consensus 78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 33888875442 347788888888888877666553
No 493
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=68.86 E-value=50 Score=25.30 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcc-c-CchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccCCCC
Q psy10573 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH 125 (206)
Q Consensus 48 ~~~~~~vLDlG~-G-~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 125 (206)
+.++..|+-.|+ | .|..+..+++..+ .+++.++.++...+.+++.... . ..-+.....+.........+.
T Consensus 106 ~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~ 177 (293)
T cd05195 106 LQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGGP-V-----DHIFSSRDLSFADGILRATGG 177 (293)
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCCC-c-----ceEeecCchhHHHHHHHHhCC
Confidence 678888887763 3 4666666776654 4788888777777666543210 0 000110000111100000123
Q ss_pred CCeeEEEecCChHHHHHHHHhcccCCcEEEEEec
Q psy10573 126 GSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 126 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
..+|+++....-. ......+.++++|.++....
T Consensus 178 ~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~ 210 (293)
T cd05195 178 RGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIGK 210 (293)
T ss_pred CCceEEEeCCCch-HHHHHHHhcccCceEEEeec
Confidence 3569988654433 66778899999999886543
No 494
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=68.75 E-value=4.6 Score=28.11 Aligned_cols=51 Identities=14% Similarity=-0.117 Sum_probs=30.0
Q ss_pred ceEEEEcccccccccCCCCCCeeEEEecCCh---------HHHHHHHHhcccCCcEEEEEec
Q psy10573 107 RVQFVAYFWLRHLLLTNPHGSTRVIQSCWTK---------EEYNSWLLDQLVPGGRMVMPVG 159 (206)
Q Consensus 107 ~i~~~~~d~~~~~~~~~~~~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~l~~~~~ 159 (206)
.+++..+|..+..+- -...+|+|+.++-- ..+++.+.+++++||++...+.
T Consensus 32 ~L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 456777774332221 12567999987543 3488999999999998865443
No 495
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=68.59 E-value=18 Score=29.29 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcccCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy10573 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (206)
Q Consensus 48 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~ 96 (206)
+..+.+|+-+|+|-.....++++. |. +|..||+++..+...+-+++
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--PA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--Cc-eeEEEeCCHHHHHHHHHHHH
Confidence 467889999999966666666553 43 99999999988777665554
No 496
>PRK06194 hypothetical protein; Provisional
Probab=68.54 E-value=33 Score=26.91 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=43.3
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-------
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------- 122 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------- 122 (206)
+.++|-.| |+|..+..+++.+ ..+.+|+.+|.++..++...+.+... ..++.++.+|..+.....
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46777555 4455555555443 24558899998876665554444321 135777888833221110
Q ss_pred CCCCCeeEEEecCC
Q psy10573 123 NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 ~~~~~~D~i~~~~~ 136 (206)
-..+..|+++.+..
T Consensus 79 ~~~g~id~vi~~Ag 92 (287)
T PRK06194 79 ERFGAVHLLFNNAG 92 (287)
T ss_pred HHcCCCCEEEECCC
Confidence 01134588888654
No 497
>PRK07063 short chain dehydrogenase; Provisional
Probab=68.53 E-value=37 Score=26.14 Aligned_cols=81 Identities=19% Similarity=0.075 Sum_probs=45.2
Q ss_pred CCeEEEEcccCchHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEcccccccccC-------
Q psy10573 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLT------- 122 (206)
Q Consensus 51 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------- 122 (206)
++.+|-.|++ |..+..+++.+ ..+.+|+.++.++...+...+.+.... ...++.++..|..+.....
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEEEEEccCCCHHHHHHHHHHHH
Confidence 5678877765 44445444433 244588899988877766665554310 1235777787832221110
Q ss_pred CCCCCeeEEEecCC
Q psy10573 123 NPHGSTRVIQSCWT 136 (206)
Q Consensus 123 ~~~~~~D~i~~~~~ 136 (206)
-.-+..|+++.+..
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 01145688887654
No 498
>KOG1202|consensus
Probab=68.43 E-value=19 Score=34.98 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=56.1
Q ss_pred cCCCCCeEEEEcccCc---hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE-cccccccccC
Q psy10573 47 KIKPGARILDIGSGSG---YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA-YFWLRHLLLT 122 (206)
Q Consensus 47 ~~~~~~~vLDlG~G~G---~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~ 122 (206)
++++|.+|| |-+|+| ..++.++-. .++.|...=-|.+-.+...+++... ...++---+ .++......-
T Consensus 1549 ~mkkGekiL-IHaGsGGVGQAAIaiALa--~G~~VFTTVGSaEKRefL~~rFPqL-----qe~~~~NSRdtsFEq~vl~~ 1620 (2376)
T KOG1202|consen 1549 QMKKGEKIL-IHAGSGGVGQAAIAIALA--HGCTVFTTVGSAEKREFLLKRFPQL-----QETNFANSRDTSFEQHVLWH 1620 (2376)
T ss_pred cccCCcEEE-EecCCCchhHHHHHHHHH--cCCEEEEecCcHHHHHHHHHhchhh-----hhhcccccccccHHHHHHHH
Confidence 467888776 444444 444444433 4568877777888889998888651 111211000 0111111110
Q ss_pred CCCCCeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 123 NPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 123 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.....+|+|.... .+.-++.-.++|.-.|+|+=.
T Consensus 1621 T~GrGVdlVLNSL-aeEkLQASiRCLa~~GRFLEI 1654 (2376)
T KOG1202|consen 1621 TKGRGVDLVLNSL-AEEKLQASIRCLALHGRFLEI 1654 (2376)
T ss_pred hcCCCeeeehhhh-hHHHHHHHHHHHHhcCeeeee
Confidence 1233558776543 344557778888889998643
No 499
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.65 E-value=41 Score=30.11 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=54.0
Q ss_pred CeEEEEcccCchHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEEccccccccc-CCCCCCee
Q psy10573 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLL-TNPHGSTR 129 (206)
Q Consensus 52 ~~vLDlG~G~G~~~~~l~~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D 129 (206)
.+|+=+|+|. .+..+++.+. .+..++.+|.+++.++.+++. ...++.+|..+..-. ...-++.|
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCccCC
Confidence 4566677653 4444443331 234899999999998888642 356788883322111 00122346
Q ss_pred EEEecCChHH---HHHHHHhcccCCcEEEEEecCCC
Q psy10573 130 VIQSCWTKEE---YNSWLLDQLVPGGRMVMPVGEPF 162 (206)
Q Consensus 130 ~i~~~~~~~~---~~~~~~~~L~~gG~l~~~~~~~~ 162 (206)
.+++...-+. ..-...+.+.|...++..+.+..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 6655433322 22233455678888877766653
No 500
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=67.28 E-value=63 Score=25.86 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCeEEEEcc--cCchHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhccCccccCCCceEEEE--cccccccccCCCCC
Q psy10573 51 GARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--YFWLRHLLLTNPHG 126 (206)
Q Consensus 51 ~~~vLDlG~--G~G~~~~~l~~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~ 126 (206)
+.+||-.|+ +.|..+..+++.. .+.+++++..+++..+.+++ +.. . .++. .+...... .+..+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~-~G~~vi~~~~~~~~~~~l~~-~g~--------~--~~~~~~~~~~~~i~-~~~~~ 215 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQL-TGLTVIATASRPESQEWVLE-LGA--------H--HVIDHSKPLKAQLE-KLGLE 215 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHH-cCC--------C--EEEECCCCHHHHHH-HhcCC
Confidence 778887775 3466667777654 13588988877777766643 211 1 1111 11111000 01334
Q ss_pred CeeEEEecCChHHHHHHHHhcccCCcEEEEE
Q psy10573 127 STRVIQSCWTKEEYNSWLLDQLVPGGRMVMP 157 (206)
Q Consensus 127 ~~D~i~~~~~~~~~~~~~~~~L~~gG~l~~~ 157 (206)
.+|+++....-........+.|+++|+++..
T Consensus 216 ~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 216 AVSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 5799986433345567788899999999865
Done!