RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10573
(206 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 140 bits (356), Expect = 4e-42
Identities = 79/203 (38%), Positives = 98/203 (48%), Gaps = 33/203 (16%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
ML VDR+ F Y IGYG IS+PH+HA MLELL+ +KPG R+L+IGS
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGS 82
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHL 119
GSGYLTAC A M G G V +EH+ EL E + +N++K L V V
Sbjct: 83 GSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-----LGLENVIVV-------- 129
Query: 120 LLTNPHGSTR----------VIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
G R I E L+DQL GGR+V+PVG Q L
Sbjct: 130 -----VGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGN-QVLQQ 183
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
DK DG ++ + GVR PL
Sbjct: 184 FDKRNDGSVVIKDLE-GVRFVPL 205
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 110 bits (276), Expect = 4e-30
Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L V R+ F E Y +IGYG IS+PH+ A M ELL+ +KPG ++L+IG+
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESS---IKNIDKGN-SELLDQGRVQFVAYFW 115
GSGY A LA + G +G V +E + ELAE + ++ + N ++ G +
Sbjct: 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL-- 144
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
P+ R+ + + + L+DQL GG +VMPVGE Q L +K
Sbjct: 145 -------APY--DRIYVTAAGPKIPEA-LIDQLKEGGILVMPVGE--YLQVLKRAEKRGG 192
Query: 176 GYTIVTTVVRGVRTNPL 192
I+ V V PL
Sbjct: 193 --EIIIKDVEPVAFVPL 207
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 98.9 bits (247), Expect = 7e-26
Identities = 64/180 (35%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG G IS+PH+ A+ML+LL+ +KPG R+L+IG+GSGY A LA + GRV +E +
Sbjct: 49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERI 103
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFV----AYFWLRH-----LLLTNPHGSTRVIQSCW 135
ELAE + +N+ E L V + W +++T + V ++
Sbjct: 104 EELAEQARRNL-----ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA--AAPEVPEA-- 154
Query: 136 TKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195
LLDQL PGGR+V+PVG Q L I K DG + VR PL
Sbjct: 155 --------LLDQLKPGGRLVIPVGSGPA-QRLLRITKDGDG-NFERRDLFNVRFVPLVGG 204
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 83.7 bits (208), Expect = 5e-20
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 37/203 (18%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
+ R+ F V E ++ K+ + IG G IS P++ A+M ELL+ +KPG R+L
Sbjct: 30 IEATPRELF----VPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRVQFV 111
+IG+GSGY A LA++ RV+ VE + L + + + + G +
Sbjct: 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140
Query: 112 AY--FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
AY F R++ + E + LL+QL GG +V PVG + Q LT
Sbjct: 141 AYAPF-------------DRILVTAAAPEIPRA-LLEQLKEGGILVAPVGGEEQ-QLLTR 185
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
+ K V+ VR PL
Sbjct: 186 VRKRGGR--FEREVLEEVRFVPL 206
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 79.7 bits (197), Expect = 1e-18
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 23/198 (11%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R F + Y +IGYG IS+ H+ A M ELL +K G ++L+IG+
Sbjct: 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGT 85
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRVQFVAYFW 115
GSGY A +A + G G+V +E + ELAE + K + K + ++ G + +
Sbjct: 86 GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN-- 143
Query: 116 LRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
P+ R+ + + L++QL GG MV+PVG Q L ++K D
Sbjct: 144 -------APY--DRIYVTAAGPDIPKP-LIEQLKDGGIMVIPVGSYS--QELIRVEK--D 189
Query: 176 GYTIVTTVVRGVRTNPLY 193
I+ + V PL
Sbjct: 190 NGKIIKKKLGEVAFVPLI 207
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 72.5 bits (178), Expect = 7e-16
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 29/186 (15%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
ML V R+ F V+ E YR+ + + + GA IS+PH+ A M EL++ + PG +IL
Sbjct: 24 MLSVPREEF---VMPE-YRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPR--PGMKIL 77
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLD----QGRVQF 110
++G+GSGY A A G+VY VE V ELA + +NI++ G +++ G+
Sbjct: 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137
Query: 111 VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+ +++T + I S L+ QL GG +V+PV E GQ L +
Sbjct: 138 EKHAPFDAIIVT---AAASTIPSA---------LVRQLKDGGVLVIPVEEGV-GQVLYKV 184
Query: 171 DKLADG 176
K +
Sbjct: 185 VKRGEK 190
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 62.4 bits (152), Expect = 1e-11
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 41/143 (28%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVME- 86
+S+PHI A MLE ++PG R+L+IGSG GY A LA + GP G V V E V +
Sbjct: 65 VSAPHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDR 121
Query: 87 ----LAESSIKNI-------DKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCW 135
LA + + + G EL R+ W I W
Sbjct: 122 ARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAW--------------DIPPAW 167
Query: 136 TKEEYNSWLLDQLVPGGRMVMPV 158
LDQL PGGR+V+P+
Sbjct: 168 ---------LDQLAPGGRLVVPL 181
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 57.3 bits (139), Expect = 4e-10
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI Y D +I A + I PG+R+L+ G+GSG LTA LA GPEG V E
Sbjct: 76 QIIYPKDAG--YIVA------RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127
Query: 84 VMELAESSIKNIDK 97
+ A+++ +N+ +
Sbjct: 128 REDFAKTARENLSE 141
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 46.7 bits (111), Expect = 4e-07
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-Q 109
G R+LD G+GSG A AGP+ RV GVE E A + + + + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAA-RAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 110 FVAYFWLR----HLLLTNP-----HGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
L L+L NP G + + + + + L L PGG +V+
Sbjct: 60 ARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYD--RFLAAALRLLKPGGVLVV 113
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This
family appears to be have methyltransferase activity.
Length = 151
Score = 47.0 bits (112), Expect = 6e-07
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+K G ++LD+G G+GYLT LA GP V G++ E E + +N K
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK 50
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 46.2 bits (110), Expect = 7e-07
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMEL 87
++ + A L L+ ++PG + DIG+G+G +T A + P GRVY +E ++L
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDL 58
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-----GSTRVIQSCWTKEEYNS 142
E +++ N +++ LL +P GS ++Q E
Sbjct: 59 IERNLRRFGVSNIVIVEGD------APEAPEDLLPDPDAVFVGGSGGLLQ------EILE 106
Query: 143 WLLDQLVPGGRMVMPV 158
+ +L PGGR+V+
Sbjct: 107 AVERRLRPGGRIVLNA 122
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 44.6 bits (106), Expect = 2e-06
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD--QGR 107
PGAR+LDIG G+G L P RV GV+ E+ E + +N + QG
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 108 VQFVAYFWLRH---LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVM 156
+ ++ + + L PGGR+V+
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLELLDALASL----------LKPGGRLVL 101
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 45.7 bits (109), Expect = 3e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++PG R+LD+G G G LA GPEGRV G++
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGID 51
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 45.1 bits (107), Expect = 8e-06
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 14 VNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG 73
+ P+R QI Y DIS MLEL KPG+ + + G+GSG L+ +A
Sbjct: 77 LALPHRT---QILYTPDISLII---MMLEL-----KPGSVVCESGTGSGSLSHAIARTVA 125
Query: 74 PEGRVYGVE 82
P G +Y E
Sbjct: 126 PTGHLYTFE 134
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 44.2 bits (105), Expect = 1e-05
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
+ L LL RILD+G+GSG + LA GP+ V V + LA +
Sbjct: 99 LVEAALALLLQL---DKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENA 154
Query: 93 K-----NIDKGNSELLDQGRVQFVAYFWLRHLLLTNP 124
+ + S+L + R +F L+++NP
Sbjct: 155 ERNGLVRVLVVQSDLFEPLRGKF-------DLIVSNP 184
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 43.2 bits (102), Expect = 2e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L L K +++ G ILDIG G+G +T + + G G+VY V+ + + +N +K
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 41.4 bits (98), Expect = 7e-05
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 42 ELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
LL + K G R+L++G+GSG + A +V GV+ + +E A+ + K
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAK 66
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 41.1 bits (97), Expect = 1e-04
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 29/136 (21%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ I A L L+ +PG R+ DIG+G+G +T A AGP GRV +E E E
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALEL 73
Query: 91 SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPH-------GS---TRVIQSCWTKEEY 140
+N + ++ V L P G ++++ W +
Sbjct: 74 IERNAAR-----FGVDNLEVVEG-DAPEALPDLPSPDAIFIGGGGNIEEILEAAWER--- 124
Query: 141 NSWLLDQLVPGGRMVM 156
L PGGR+V
Sbjct: 125 -------LKPGGRLVA 133
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
++KPG +LD+GSG G+ C A GP G+V GV+ E+ + N K
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 41.0 bits (96), Expect = 2e-04
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 29 ADISSPHIHAQMLELLKDK------------IKPGARILDIGSGSGYLTACLAYMAGPEG 76
A ++ P A ++ +DK +KPGA ++D+ G GY T + GP+G
Sbjct: 17 AALADPSRPAA--DMARDKARHPGEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKG 74
Query: 77 RVYGV 81
+VY
Sbjct: 75 KVYAY 79
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 40.4 bits (95), Expect = 3e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 11 TRVVNEPYRIKSRQIGYGADISS---PHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC 67
T++ + + G SS P + A+MLE L ++ G R+L+IG+G+GY A
Sbjct: 67 TQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAAL 124
Query: 68 LAYMAGPEGRVYGVE---HVMELAESSI 92
L + G + V VE + A S++
Sbjct: 125 LCHRLG-DDNVTSVEVDPGLAARAASAL 151
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 40.2 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 39.7 bits (93), Expect = 3e-04
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 30 DISSPHIHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-- 81
D+ S IH L KD K G + LD+ G+G T L+ AG G+V G+
Sbjct: 25 DVISFGIH----RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDI 80
Query: 82 -EHVMELAESSIKNIDKGNSELL 103
E++++ E K K N E L
Sbjct: 81 NENMLKEGEKKAKEEGKYNIEFL 103
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 39.2 bits (92), Expect = 5e-04
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 27 YGADISSPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ + P I + LL+ ++ RIL+IG+ GY +A +GR+ +E
Sbjct: 34 FARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD 93
Query: 85 MELAESSIKNIDKGNSE 101
E AE + +N+ + +
Sbjct: 94 EERAEIARENLAEAGVD 110
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 39.3 bits (92), Expect = 6e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 38.7 bits (90), Expect = 0.001
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 2 LRVDRKNFFTR-----VVNEPYRIKSRQIGYGADISS-PHIHAQMLELLKDKIKPGARIL 55
L V R+ F T+ V E + S G SS P + A +E + + G R+L
Sbjct: 28 LEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---A 112
+IG G+GY A ++ + G +G V VE+ ++ E I K N L V FV
Sbjct: 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE-----IAKRNVRRLGIENVIFVCGDG 140
Query: 113 YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 172
Y+ + P+ + + E +W QL GGR+++P+ NL + +
Sbjct: 141 YYGVPEF---APYDV--IFVTVGVDEVPETW-FTQLKEGGRVIVPI-------NLKLSRR 187
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 37.4 bits (88), Expect = 0.002
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LE LK R+LD+G+GSG + LA P+ RV V +++ ++ + + N+
Sbjct: 81 LERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAV----DISPEALA-VARKNA 131
Query: 101 ELLDQGRVQFVAYFWLR-------HLLLTNP 124
L V+F+ W L+++NP
Sbjct: 132 ARLGLDNVEFLQSDWFEPLPGGKFDLIVSNP 162
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 35 HIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLA 69
+ ++L LLK+K A +LDIG G+GYLT L
Sbjct: 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALL 53
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 36.9 bits (86), Expect = 0.003
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G +LD+G+G+G L A A + G RV V+ E E I + N+E L G V+F
Sbjct: 46 GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE-----IARANAEELL-GDVEF 97
Query: 111 VA----YFWLR-HLLLTNP 124
V F + ++ NP
Sbjct: 98 VVADVSDFRGKFDTVIMNP 116
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELL 103
++ G LD+ G+ + LA GPEG V G+ E+++ + +K+ N EL+
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +K G +LD+G GSG L A + G + +V GV+ + A E++ +N
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL-GAK-KVVGVD-IDPQAVEAARENARLNG 209
Query: 100 SELLDQ 105
ELL Q
Sbjct: 210 VELLVQ 215
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 36.7 bits (85), Expect = 0.004
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKN 94
+ ++L+ L G R+LD G G+G L+ LA G V V +++E ++
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAV----DISEQMVQM 92
Query: 95 IDKGNSELLDQGRVQFV 111
G V+F
Sbjct: 93 ARNRAQGRDVAGNVEFE 109
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 35.9 bits (83), Expect = 0.004
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A++L L ++KPG R+LDIG G+G L L G V GV+ A I ++
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE-RGF--DVTGVD--PSPAAVLIFSLFD 64
Query: 98 GNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTKEEYNSWLL 145
+ G+ + +L L +P ++Q + LL
Sbjct: 65 APDPAVLAGKYDLI---TAFEVLEHLPDPP---ALLQQLRELLKPGGVLL 108
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 36.7 bits (86), Expect = 0.004
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+PG ++LD+ G+G L LA G G V G+
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 35.1 bits (81), Expect = 0.006
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA 112
R+LD+G G+G L LA +GP RV GV +++ +++ K + LL V+ +
Sbjct: 1 RVLDLGCGTGALA--LALASGPGARVTGV----DISPVALELARKAAAALLAD-NVEVLK 53
Query: 113 YFWLRHLLLTNPHGSTRVIQS----CWTKEEYNSWL---LDQLVPGGRMVMPV 158
L S VI S E+ +L L PGG +V+ +
Sbjct: 54 GDAEE--LPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 143
Score = 35.2 bits (82), Expect = 0.007
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 38 AQMLELLKDKI---KPGARILDIGSGSGYLTACLAY---MAGPEGRVYGVEHVMELAESS 91
A+ +E L ++ ++D G+G GYL L Y RV G++ EL E +
Sbjct: 10 AEFVEPLIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKA 69
Query: 92 IK 93
Sbjct: 70 NA 71
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 34.9 bits (81), Expect = 0.013
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 25/160 (15%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE----HVMELAESSIK 93
++ E K G +LD+G+ G + L G G+V V+ ++
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-GGAGKVVAVDLGPMEPIQGVYFLRG 68
Query: 94 NI-DKGNSELLDQ---GRVQFV----AYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLL 145
+I D E L + G+V V A + V+ + L
Sbjct: 69 DITDPETLEKLRELLPGKVDLVLSDGAPNVSGIENTDSFISLQLVLAAL-------LLAL 121
Query: 146 DQLVPGGRMVMPVGEPFKGQNLT--IIDKLADGYTIVTTV 183
+ L PGG V+ V FKG + +++KL G+ V
Sbjct: 122 EVLRPGGNFVVKV---FKGFEFSVELLEKLKKGFEKVGIF 158
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 34.6 bits (80), Expect = 0.015
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
LE + + I PG+R+LD+G G G L A L G YG+E
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRG--YGIE 43
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 34.4 bits (80), Expect = 0.025
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
LE L+ + PG +LD+G GSG L A A G +V V
Sbjct: 109 CLEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGA-KKVLAV 148
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 34.4 bits (80), Expect = 0.025
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV---MELAESSIKNIDKGN 99
L +K R+LD+G+GSG + LA P+ V V+ + +A +N G
Sbjct: 101 LEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVAR---RNAKHGL 156
Query: 100 SELLDQGRVQFV------AYFWLR-HLLLTNP 124
RV+F+ R L+++NP
Sbjct: 157 -----GARVEFLQGDWFEPLPGGRFDLIVSNP 183
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 33.8 bits (78), Expect = 0.044
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME-LAESSIKNIDKGNS 100
IKPG ++LD+ G+G + LA G G V G++ L + K KG
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQ 101
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase
C as well as other methyltransferases .
Length = 170
Score = 32.9 bits (76), Expect = 0.052
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G ++LD+G G G L A LA P+ V V+
Sbjct: 30 PLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVD 62
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 32.7 bits (75), Expect = 0.092
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELLDQGRVQ 109
ILD+G+GSG + LAY P V V+ + +AE +N +K E RV+
Sbjct: 117 HILDLGTGSGCIALALAY-EFPNAEVIAVDISPDALAVAE---ENAEKNQLE----HRVE 168
Query: 110 FVAYFWLRHL-------LLTNP 124
F+ L +++NP
Sbjct: 169 FIQSNLFEPLAGQKIDIIVSNP 190
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 31.1 bits (71), Expect = 0.10
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVE 82
LD+G G+G L LA G RV GV+
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVD 26
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 32.2 bits (74), Expect = 0.13
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDK 97
LE L+ +KPG +LD+G GSG L A A G + +V GV+ + +A ++ +N +
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGAK-KVVGVD-IDPVAVRAAKENAEL 205
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 32.0 bits (73), Expect = 0.14
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ I PG+R+LD+G G G L L +G G+E
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDG--RGIE 43
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 31.7 bits (73), Expect = 0.20
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 41 LELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
L+L+ K+ KPG R+LDIG G G L Y A YGV
Sbjct: 156 LDLICRKLQLKPGMRVLDIGCGWGGL---ARYAA----EHYGVS 192
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 31.5 bits (72), Expect = 0.24
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 38 AQM--LELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEG-RVYGV 81
AQ L+L+ +K+ KPG +LDIG G G L Y A G V GV
Sbjct: 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGL---AIYAAEEYGVTVVGV 101
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 205
Score = 30.7 bits (70), Expect = 0.33
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 15 NEPYRIKSRQIGYGADISSPHIHAQ--MLELL-KDKI-KPGARILDIGSGSGYLTACLAY 70
+PY K+++ GY + A +LEL K K+ KPG ++D+G+ G + A
Sbjct: 13 RDPYYKKAKKEGYRS-------RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAK 65
Query: 71 MAGPEGRVYGVE 82
G G++ V+
Sbjct: 66 KLGAGGKIVAVD 77
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 31.0 bits (70), Expect = 0.42
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 26 GYGADISSPHIHAQ-------MLELLKDKIKPGARILDIG-SGSGYLTAC------LAYM 71
G A+ PHI++ +LE +D+ I+ +G SG+G T+C LA
Sbjct: 59 GCKAEDMPPHIYSLAQTAYRALLETRRDQ-----SIIFLGRSGAGKTTSCKHALEYLALA 113
Query: 72 AGPEGRVYGVEHV 84
AG VE V
Sbjct: 114 AGSVDGRVSVEKV 126
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 30.5 bits (70), Expect = 0.43
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 36 IHAQMLELLKDKIKPGARILDI 57
I +++ E IKPGA++LD+
Sbjct: 11 IASKVREEAAKLIKPGAKLLDV 32
>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 31.0 bits (71), Expect = 0.44
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 28/116 (24%)
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKE--EYNSWL 144
A K K +LL + +++ +A H +++Q +T E + L
Sbjct: 325 PASHDFKLAQKELDQLLKRAQLRPLAVGV---------HPDRQLLQLAYTSEVADSALKL 375
Query: 145 LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQK 200
LD G + KL +G +V V GV NPL+ RF Q+
Sbjct: 376 LDDAALPGEL-----------------KLREGLALVALVGAGVTRNPLHCHRFYQQ 414
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 30.5 bits (70), Expect = 0.46
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 42 ELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
EL++D P RILD+ +GSG + A A P+ V V + +AE
Sbjct: 119 ELIEDGFAPWLEDPPVTRILDLCTGSGCI-AIACAYAFPDAEVDAVDISPDALAVAE--- 174
Query: 93 KNIDK 97
NI++
Sbjct: 175 INIER 179
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 30.3 bits (69), Expect = 0.49
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 43 LLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
LL RILD+G+G+G L LA + ++ GVE E AE + +N+
Sbjct: 35 LLAAFAPVPKKGRILDLGAGNGALGLLLA-QRTEKAKIVGVEIQEEAAEMAQRNV 88
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the
UbiE enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a
wide distribution of bacteria and eukaryotes, but no
archaea. An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC
2.1.1.17) from Rhodobacter sphaeroides. Note that a
number of non-orthologous genes which are members of
pfam03737 have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 30.3 bits (69), Expect = 0.52
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAE 89
+ G ++LD+ G+G L LA A G+V GV ++E+A+
Sbjct: 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 30.6 bits (70), Expect = 0.53
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 22/54 (40%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM-----AGPEGRVYGVE 82
PH+ LK + +LD+G G+GY +M AG + V G++
Sbjct: 116 PHLSP-----LKGR-----TVLDVGCGNGY------HMWRMLGAGAK-LVVGID 152
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 30.6 bits (66), Expect = 0.54
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 1/140 (0%)
Query: 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPE 75
E Y + + ++ + ++ L + G +LDIG G+G L LA + G
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-LARLGGRG 72
Query: 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCW 135
V GV+ E+ + + L+D + + + ++
Sbjct: 73 AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL 132
Query: 136 TKEEYNSWLLDQLVPGGRMV 155
+ LL L PGGR+V
Sbjct: 133 PPAKALRELLRVLKPGGRLV 152
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 30.2 bits (68), Expect = 0.61
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
LE L+D ++D+G GSG L + A G +V G++ ES+ KN
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGIL-SIAALKLGAA-KVVGIDIDPLAVESARKN 201
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 30.0 bits (68), Expect = 0.78
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IK G+++L +G+ SG + ++ + G EGR+Y VE
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVE 107
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 28.5 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVE 82
LDIG G+G L L A P GV+
Sbjct: 1 LDIGCGTGTLLRALL-EALPGLEYTGVD 27
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 29.6 bits (67), Expect = 0.99
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
L + + +K GARI DIGS YL P E V ES+I+N+ K N
Sbjct: 7 LTTVANLVKQGARIADIGSDHAYL-PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN- 64
Query: 101 ELLDQGRV 108
L ++ V
Sbjct: 65 -LSERIDV 71
>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl
reductase (PTCR)-like, classical (c) SDRs. PTCR is a
classical SDR which catalyzes the NADPH-dependent
reduction of ketones on steroids and prostaglandins.
Unlike most SDRs, PTCR functions as a monomer. This
subgroup also includes human carbonyl reductase 1 (CBR1)
and CBR3. CBR1 is an NADPH-dependent SDR with broad
substrate specificity and may be responsible for the in
vivo reduction of quinones, prostaglandins, and other
carbonyl-containing compounds. In addition it includes
poppy NADPH-dependent salutaridine reductase which
catalyzes the stereospecific reduction of salutaridine
to 7(S)-salutaridinol in the biosynthesis of morphine,
and Arabidopsis SDR1,a menthone reductase, which
catalyzes the reduction of menthone to neomenthol, a
compound with antimicrobial activity; SDR1 can also
carry out neomenthol oxidation. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 225
Score = 29.1 bits (66), Expect = 1.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIK 93
+L LLK P RI+++ SG G LT AY EL E+ IK
Sbjct: 121 LLPLLKKS--PAGRIVNVSSGLGSLT--SAYGVSKAALNALTRILAKELKETGIK 171
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
G ++LD+G G G L LA P+ ++ V+ ES+ KN+
Sbjct: 157 DLGGKVLDLGCGYGVLGLVLAK-KSPQAKLTLVDVNARAVESARKNL 202
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 28.6 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++PG +L+IG G G LT L A RV +E
Sbjct: 10 NLRPGDTVLEIGPGKGALTEELLERA---KRVTAIE 42
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 28.8 bits (65), Expect = 1.7
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 41 LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM---------ELAE 89
L+L+ DK +KPG +LDIG G G L + A Y V +V+ + A
Sbjct: 51 LDLILDKLGLKPGMTLLDIGCGWGGL---MRRAA----ERYDV-NVVGLTLSKNQYKHAR 102
Query: 90 SSIKNIDKGNS-ELLDQGRVQF 110
+ E+L Q F
Sbjct: 103 QRVAAEGLQRKVEVLLQDYRDF 124
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74
+P + ++++ ++ +L+IG G G LT LA A
Sbjct: 14 NPKVINRIVDKAN--LQESDTVLEIGPGKGALTTELAKRAKQ 53
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 28.8 bits (65), Expect = 1.8
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 38 AQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
++ E + ++ G R+LD+ G G LA +V+GVE E E++ +N
Sbjct: 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENA 335
Query: 96 DKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLD 146
N V+F+A + + W + + ++D
Sbjct: 336 -AANGID----NVEFIA--------GD----AEEFTPAWWEGYKPDVVVVD 369
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 28.6 bits (65), Expect = 2.1
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 37 HAQM----LELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELA 88
H +M L L G RILD G G G L+ LA +V ++E A
Sbjct: 45 HQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEA 101
Query: 89 ESSIKNIDKGNSELLDQGRVQFVA 112
E G + F
Sbjct: 102 RERAP-------EAGLAGNITFEV 118
>gnl|CDD|237840 PRK14866, PRK14866, hypothetical protein; Provisional.
Length = 451
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 29 ADISSPHIHAQMLELLKD-KIKPGARILDIGS 59
AD +S HI +LELL + R G+
Sbjct: 10 ADPASVHIREHLLELLDWEERSDEGRPDGGGT 41
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase.
This model represents an O-methyltransferase believed
to act at two points in the ubiquinone biosynthetic
pathway in bacteria (UbiG) and fungi (COQ3). A separate
methylase (MenG/UbiE) catalyzes the single
C-methylation step. The most commonly used names for
genes in this family do not indicate whether this gene
is an O-methyl, or C-methyl transferase [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Menaquinone and ubiquinone].
Length = 224
Score = 28.4 bits (64), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 45 KDKIKPGARILDIGSGSGYLTACLA 69
K + G R+LD+G G G L+ LA
Sbjct: 41 KKPLF-GLRVLDVGCGGGLLSEPLA 64
>gnl|CDD|216153 pfam00854, PTR2, POT family. The POT (proton-dependent
oligopeptide transport) family all appear to be proton
dependent transporters.
Length = 372
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 97 KGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR-MV 155
G S A R L L W E+YN + Q R V
Sbjct: 131 PGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY-----WALEKYNKRSISQTKVHTRVAV 185
Query: 156 MPVGEPF 162
+ + P
Sbjct: 186 IFIPLPK 192
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18.
Also known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and
arylamides.
Length = 291
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 36 IHAQMLELLKDKIKPGARILDI 57
IH Q+ + + IKPG +L+I
Sbjct: 10 IHRQVRKYAQSLIKPGMTLLEI 31
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase [Coenzyme metabolism].
Length = 243
Score = 28.1 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
PG R+LD+G G G L+ LA + V G+
Sbjct: 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGI 87
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 143 WLLDQLVPGGRMVM 156
W L L PGGR+V+
Sbjct: 116 WSLAHLHPGGRLVL 129
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 28.0 bits (63), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 40 MLELLKDKIKPGA-RILDIGSGSGYLTACLA 69
+ LL +++ A +LDIG G GY T LA
Sbjct: 74 VANLLAERLDEKATALLDIGCGEGYYTHALA 104
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 27.9 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 KDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
K K IKPG +LD+G+ G + G +GRV V+
Sbjct: 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVD 64
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the
immunosuppressant FK506 in Streptomyces strain MA6548.
Length = 144
Score = 27.3 bits (61), Expect = 3.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++D+G+ G + A G EGRV E
Sbjct: 2 VIDVGANIGDFSLYFA-RKGAEGRVIAFE 29
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 27.8 bits (62), Expect = 3.5
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELA 88
K+K G R+LD +G GY TA A G V VE +V+ELA
Sbjct: 131 KVKRGERVLDTCTGLGY-TAIEALERGAI-HVITVEKDPNVLELA 173
>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family, including threonine dehydrogenase.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 28.0 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYG 80
I PG ++ +G G G L A + + GP+ + G
Sbjct: 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG 186
>gnl|CDD|220289 pfam09552, RE_BstXI, BstXI restriction endonuclease. This family
includes the BstXI (recognises and cleaves
CCANNNNN^NTGG) restriction endonuclease.
Length = 287
Score = 27.7 bits (61), Expect = 3.9
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
K P R D+G Y+ E ++ + E + I+ + N+E L++
Sbjct: 109 KTGPIVRSKDVGGH--YVLRLSGTTNEKERKIRVGFNETEGPGAGIRAPEYANAETLEKA 166
Query: 107 RVQFVAYFWLRH 118
R+Q +Y+WL
Sbjct: 167 RLQLESYYWLII 178
>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein
[ACP] reductase (BKR), subgroup 1, classical (c) SDR.
This subgroup includes Escherichia coli CFT073 FabG.
The Escherichai coli K12 BKR, FabG, belongs to a
different subgroup. BKR catalyzes the NADPH-dependent
reduction of ACP in the first reductive step of de novo
fatty acid synthesis (FAS). FAS consists of four
elongation steps, which are repeated to extend the
fatty acid chain through the addition of two-carbo
units from malonyl acyl-carrier protein (ACP):
condensation, reduction, dehydration, and a final
reduction. Type II FAS, typical of plants and many
bacteria, maintains these activities on discrete
polypeptides, while type I FAS utilizes one or two
multifunctional polypeptides. BKR resembles enoyl
reductase, which catalyzes the second reduction step in
FAS. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with
structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet) NAD(P)(H)
binding region and a structurally diverse C-terminal
region. Classical SDRs are typically about 250 residues
long, while extended SDRS are approximately 350
residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes have a 3-glycine N-terminal
NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs.
Extended SDRs have additional elements in the
C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P) binding motif and an altered
active site motif (YXXXN). Fungal type type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P) binding motif and missing or
unusual active site residues. Reactions catalyzed
within the SDR family include isomerization,
decarboxylation, epimerization, C=N bond reduction,
dehydratase activity, dehalogenation, Enoyl-CoA
reduction, and carbonyl-alcohol oxidoreduction. A
critical catalytic Tyr residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering), is often found in a conserved YXXXK
pattern. In addition to the Tyr and Lys, there is often
an upstream Ser (Ser-138, 15-PGDH numbering) and/or an
Asn (Asn-107, 15-PGDH numbering) or additional Ser,
contributing to the active site. Substrates for these
enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is
a proton relay involving the conserved Tyr-151 and
Lys-155, and well as Asn-111 (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is
not generally found among SDRs.
Length = 255
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 11 TRVVNEPYRIKSRQIGYGADISSPHIHAQMLE 42
T VV E R I + ADI H +L+
Sbjct: 40 TEVVAEVLAAGRRAIYFQADIGELSDHEALLD 71
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 27.6 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I PG +L+IG G G LT L A RV +E
Sbjct: 27 NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIE 59
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 27.8 bits (61), Expect = 4.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE---------SSIKNIDKGNSE 101
G + +DIG G G L+ LA M V V+ +++A S+I+ + +
Sbjct: 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK 191
Query: 102 LLDQGR 107
L D+GR
Sbjct: 192 LADEGR 197
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 27.6 bits (62), Expect = 4.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G +L+IG G G LT LA A VY +E
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKRAKK---VYAIE 58
>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This
family consists of thiopurine S-methyltransferase
proteins from both eukaryotes and prokaryotes.
Thiopurine S-methyltransferase (TPMT) is a cytosolic
enzyme that catalyzes S-methylation of aromatic and
heterocyclic sulfhydryl compounds, including anticancer
and immunosuppressive thiopurines.
Length = 203
Score = 27.4 bits (61), Expect = 4.5
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
+ PG R+L G + ++A V GV E++E +++
Sbjct: 19 NLPPGLRVLVPLCGKALD---MVWLAEQGHFVVGV----EISELAVE 58
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 27.3 bits (61), Expect = 4.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAE 89
SP + + + K +K G ++D+ +G G + +A + RVY VE ++ +
Sbjct: 84 SPRLIGERERIAK-LVKEGEVVVDMFAGIGPFSIPIAKHSKA-KRVYAVELNPEAVKYLK 141
Query: 90 SSIK 93
+IK
Sbjct: 142 ENIK 145
>gnl|CDD|240312 PTZ00202, PTZ00202, tuzin; Provisional.
Length = 550
Score = 27.8 bits (62), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM 71
H QM ELL++++K + SG ++A +A +
Sbjct: 180 HRQMRELLRERVKERDFRYVLTKYSGVVSASVALL 214
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 27.5 bits (61), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
K G R+LD+ GSG L L+ G +G+V G++ E
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE 109
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 27.4 bits (61), Expect = 5.0
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 10 FTRVVNEPYRIKS---RQIG--YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYL 64
F V P+ I S G Y + SS M+ + + + R+LD+ + G
Sbjct: 32 FFEVKESPFSIGSTPEYLFGYYYPQEASS------MIPPIALEPREDERVLDMAAAPGGK 85
Query: 65 TACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
T ++ + +G + E ++ I NI++
Sbjct: 86 TTQISQLMKNKGCIVANEISKSRTKALISNINR 118
>gnl|CDD|221074 pfam11312, DUF3115, Protein of unknown function (DUF3115). This
eukaryotic family of proteins has no known function.
Length = 284
Score = 27.6 bits (62), Expect = 5.1
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 166 NLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 196
++T++D +AD +V + +R+ LY
Sbjct: 114 SVTLVD-IADWSNVVDRLATAIRSPWLYSIE 143
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4. The
20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 27.3 bits (61), Expect = 5.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 74 PEGRVYGVEHVME 86
PEGR+Y VE+ ME
Sbjct: 12 PEGRLYQVEYAME 24
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 27.5 bits (62), Expect = 5.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 53 RILDIGSGSGYLTACLAYMAG---PEGRVYGV---EHVMELAESSIKN 94
RILD+ +GSG C+A PE V V + +AE +I+
Sbjct: 124 RILDLCTGSG----CIAIACAYAFPEAEVDAVDISPDALAVAEINIER 167
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 27.6 bits (61), Expect = 5.7
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 38 AQMLELLKDKIKPGARILDIGS--GSGYLTA-----CLAYMAGPEGRV---------YGV 81
+L+LL +++ PG +D + +G+L A + PE + Y V
Sbjct: 43 EFLLDLLTNRVPPG---VDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYNV 99
Query: 82 EHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYN 141
+++ +S NI ++ L + F ++ + TN + + +V+QS W E
Sbjct: 100 HPLIDALDSQDANIAPIAAKALSHTLLVFDNFYDVEEKSKTNEY-AKQVMQS-WADAE-- 155
Query: 142 SWLLDQ 147
W L++
Sbjct: 156 -WFLNK 160
>gnl|CDD|235267 PRK04266, PRK04266, fibrillarin; Provisional.
Length = 226
Score = 27.2 bits (61), Expect = 6.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVM----ELAESSIKNI 95
IK G+++L +G+ SG + ++ + EG VY VE M E+AE KNI
Sbjct: 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-KNI 122
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 27.0 bits (61), Expect = 6.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 41 LELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
L +++ G R+LD+G G G L+ +A + V G+ + +E +I+
Sbjct: 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGI----DASEENIE 84
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 27.2 bits (60), Expect = 6.6
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 20 IKSRQIGYGAD-ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRV 78
IK+ + +G D ISS I A L ++ +++LDIGSG G C V
Sbjct: 21 IKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLG--GGCKYINEKYGAHV 78
Query: 79 YGV---EHVMELAESSIKNIDKGNSELLD 104
+GV E ++ +A+ + +K E D
Sbjct: 79 HGVDICEKMVNIAKLRNSDKNKIEFEAND 107
>gnl|CDD|238070 cd00123, DmpA_OAT, DmpA/OAT superfamily; composed of
L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine
acetyltransferase (OAT) and similar proteins. DmpA is an
aminopeptidase that releases N-terminal D and L amino
acids from peptide substrates. This group represents one
of the rare aminopeptidases that are not metalloenzymes.
DmpA shows similarity in catalytic mechanism to
N-terminal nucleophile (Ntn) hydrolases, which are
enzymes that catalyze the cleavage of amide bonds
through the nucleophilic attack of the side chain of an
N-terminal serine, threonine, or cysteine. OAT catalyzes
the first and fifth steps in arginine biosynthesis,
coupling acetylation of glutamate with deacetylation of
N-acetylornithine, which allows recycling of the acetyl
group in the arginine biosynthetic pathway. The
superfamily also contains an enzyme, endo-type
6-aminohexanoate-oligomer hydrolase, that have been
shown to be involved in nylon degradation. Proteins in
this superfamily undergo autocatalytic cleavage of an
inactive precursor at the site immediately upstream to
the catalytic nucleophile.
Length = 286
Score = 27.0 bits (59), Expect = 6.8
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 147 QLVPGGRMVMPVGEPFKGQNL---TIIDKLADGYTIVTTVVRGVRTNPLYRDRF 197
+ +V G +GQ + D T++T R +P DR
Sbjct: 166 KGNGXLEIVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAELDRL 219
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 27.1 bits (60), Expect = 7.1
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVME------LAESSIKNID 96
D IK G I+D+G+G G + + + R+YG+ E+V++ E N+
Sbjct: 415 DYIK-GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVI 472
Query: 97 KGN----SELLDQGRVQFVAYFWLRHLLLT 122
KG+ S ++ V + Y + H L +
Sbjct: 473 KGDAINLSSSFEKESVDTIVYSSILHELFS 502
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 97
Score = 25.8 bits (57), Expect = 8.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
ILD+G G+G + LA AGP V GV+
Sbjct: 1 ILDLGCGTGRVLRALAR-AGPS-SVTGVD 27
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 26.6 bits (60), Expect = 8.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 48 IKPGARILDIGSGSG 62
+ G R+LD+GSG+G
Sbjct: 43 LPGGERVLDVGSGAG 57
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 26.5 bits (59), Expect = 8.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 52 ARILDIGSGSGYLTACLAYMAGPEGR 77
+LDIG G G L LA A +G
Sbjct: 62 LTLLDIGCGGGDLAIDLARWARRDGL 87
>gnl|CDD|225671 COG3129, COG3129, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 292
Score = 26.7 bits (59), Expect = 9.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGS 61
H+ + RILDIG G+
Sbjct: 63 HLADLLASTSGQIPGKNIRILDIGVGA 89
>gnl|CDD|150245 pfam09506, Salt_tol_Pase, Glucosylglycerol-phosphate phosphatase
(Salt_tol_Pase). Proteins in this family are
glucosylglycerol-phosphate phosphatases, with the gene
symbol stpA (Salt Tolerance Protein A). A motif
characteristic of acid phosphatases is found, but
otherwise this family shows little sequence similarity
to other phosphatases. This enzyme acts on the
glucosylglycerol phosphate, product of glucosylglycerol
phosphate synthase and immediate precursor of the
osmoprotectant glucosylglycerol.
Length = 381
Score = 26.8 bits (60), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSG 60
++P H +L+L KD I L +G G
Sbjct: 261 NAPKDHQALLDLCKDHIPAEQMPLLVGVG 289
>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine
dehydrogenase (TDH) catalyzes the zinc-dependent
formation of 2-amino-3-ketobutyrate from L-threonine,
via NAD(H)-dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and have 2 tightly
bound zinc atoms per subunit. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Length = 334
Score = 26.7 bits (60), Expect = 10.0
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV---MELAES 90
+H L+LL IKPG +L G+G G L A L + G RV E +ELA+
Sbjct: 149 VHG--LDLLG--IKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKK 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,815,066
Number of extensions: 1012945
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 127
Length of query: 206
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 114
Effective length of database: 6,857,034
Effective search space: 781701876
Effective search space used: 781701876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)