RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10573
(206 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 181 bits (462), Expect = 4e-58
Identities = 78/211 (36%), Positives = 109/211 (51%), Gaps = 25/211 (11%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 31 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 87
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA---YF-WL 116
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ V +
Sbjct: 88 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 147
Query: 117 RH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIID 171
+ + + V Q+ L+DQL PGGR+++PVG Q L D
Sbjct: 148 EEAPYDAIHVGA--AAPVVPQA----------LIDQLKPGGRLILPVGPAGGNQMLEQYD 195
Query: 172 KLADGYTIVTTVVRGVRTNPLYRDRFQQKKY 202
KL DG +I + GV PL Q ++
Sbjct: 196 KLQDG-SIKMKPLMGVIYVPLTDKEKQWSRW 225
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 175 bits (445), Expect = 1e-55
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 30/202 (14%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 38 MKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 94
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVA--- 112
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V
Sbjct: 95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154
Query: 113 YF-WLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQN 166
+ + + + + L++QL GGR+++PVG Q
Sbjct: 155 RKGYPPNAPYNAIHVGA--AAPDTPTE----------LINQLASGGRLIVPVGPDGGSQY 202
Query: 167 LTIIDKLADGYTIVTTVVRGVR 188
+ DK A+G + T + GV
Sbjct: 203 MQQYDKDANG-KVEMTRLMGVM 223
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 166 bits (423), Expect = 3e-52
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR + + PY I +G IS+PH+HA L+ L + +KPG+R +D+GSG
Sbjct: 34 MLQVDRGKY---IKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSG 90
Query: 61 SGYLTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116
SGYLT C+A V G+E V +L S++NI + ELL + +
Sbjct: 91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII----- 145
Query: 117 RHLLLTNPHGSTRVIQSCWTKEE--YN------------SWLLDQLVPGGRMVMPVGEPF 162
H + + KE ++ L+D L G++++P+ E +
Sbjct: 146 --------HKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDY 197
Query: 163 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 195
Q L I K + V L ++
Sbjct: 198 T-QVLYEITKKNGKII--KDRLFDVCFVSLKKN 227
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 149 bits (378), Expect = 3e-45
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGT 100
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV----AYFW 115
GSG+ A ++ + + VY +E + EL E + +N+++ V + + +
Sbjct: 101 GSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 153
Query: 116 LRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+++T G+ ++ + L++QL GG++++PVG Q L +
Sbjct: 154 PPKAPYDVIIVTA--GAPKIPEP----------LIEQLKIGGKLIIPVGSYHLWQELLEV 201
Query: 171 DKLADGYTIVTTVVRGVRTNPL 192
K DG GV PL
Sbjct: 202 RKTKDGIK--IKNHGGVAFVPL 221
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 148 bits (375), Expect = 4e-45
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R+ F + Y +IGYG IS+ H+ M ELL +KPG ++L+IG+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV----AYFW 115
G GY A A + G +G V +E + ELAE + + + K L V + +
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVIVGDGTLGY 141
Query: 116 LRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTII 170
+ T ++ + L+ QL GG+++MPVG Q L +
Sbjct: 142 EPLAPYDRIYTTA--AGPKIPEP----------LIRQLKDGGKLLMPVGR--YLQRLVLA 187
Query: 171 DKLADGYTIVTTVVRGVRTNPL 192
+K D I+ V PL
Sbjct: 188 EKRGDE--IIIKDCGPVAFVPL 207
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 135 bits (342), Expect = 4e-39
Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 37/204 (18%)
Query: 1 MLRVDRKNFFTRVV-------NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
L + R+ F T+ + + S P + A +E + + G R
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSY-DDGEEYSTSSQPSLMALFMEWVG--LDKGMR 78
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-- 111
+L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ L V FV
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCG 133
Query: 112 --AYFWLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKG 164
Y + +T G V ++ QL GGR+++P+
Sbjct: 134 DGYYGVPEFSPYDVIFVT--VGVDEVPET----------WFTQLKEGGRVIVPINLKLSR 181
Query: 165 QNLTIIDKLADGYTIVTTVVRGVR 188
+ + K D +V R
Sbjct: 182 RQPAFLFKKKDP-YLVGNYKLETR 204
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 131 bits (333), Expect = 1e-38
Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ L + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-- 111
+L+IG+G GY TA +A + +V VE ++ + K + N ++ +
Sbjct: 74 VLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN-------NIKLILG 123
Query: 112 -AYF-WLRH-----LLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKG 164
+ +++ + + +QL GG M++P+G +
Sbjct: 124 DGTLGYEEEKPYDRVVVW---ATAPTLLCK---------PYEQLKEGGIMILPIGVG-RV 170
Query: 165 QNLTIIDKLADGYTIVTTVVRGVRTNPL 192
Q L + K + + + V +
Sbjct: 171 QKLYKVIKKGNSPS--LENLGEVMFGRI 196
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 125 bits (317), Expect = 1e-36
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 38/203 (18%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+ V R+ F + + + IG G IS P++ A+M ELL+ + P +R+L+IG+
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---AYF-W 115
GSGY TA LA++ V VE + L + + + LD V + W
Sbjct: 87 GSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHGDGWQGW 138
Query: 116 LRH-----LLLTNPHGSTRVI-QSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTI 169
+++T + I + L+ QL GG +V+PVGE + Q L
Sbjct: 139 QARAPFDAIIVT---AAPPEIPTA----------LMTQLDEGGILVLPVGE--EHQYLKR 183
Query: 170 IDKLADGYTIVTTVVRGVRTNPL 192
+ + + V VR PL
Sbjct: 184 VRRRGGEFI--IDTVEAVRFVPL 204
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 69.1 bits (168), Expect = 3e-14
Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV E
Sbjct: 82 MKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR 139
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGST------RVIQSCWTKE 138
+ + + KN ++ H ++ V
Sbjct: 140 KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH 199
Query: 139 EYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKL 173
L GG + V Q + ++D +
Sbjct: 200 VTLPVFYPHLKHGGVCAVYV--VNITQVIELLDGI 232
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 67.7 bits (165), Expect = 5e-14
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 89 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 146
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
E A+ + N+ K +V+ ++ + + + Y
Sbjct: 147 EEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDVDALFLDVPDPWNYIDKC 199
Query: 145 LDQLVPGGRMVMPV 158
+ L GGR
Sbjct: 200 WEALKGGGRFATVC 213
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 66.9 bits (163), Expect = 9e-14
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ G I P A ++ I PG I++ G GSG LT LA + GPEGRV E
Sbjct: 68 DKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNS 142
+ A+ + +NI + +++ + VI E
Sbjct: 126 IREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENVDHVILDLPQPERVVE 178
Query: 143 WLLDQLVPGGRMVMPV 158
L PGG V
Sbjct: 179 HAAKALKPGGFFVAYT 194
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 64.2 bits (156), Expect = 4e-13
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
+ +K +K G ++D G+G TA LA + G GRV+G + + ++ K + N
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 102 LLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSW-------------LLDQL 148
RV + + + + +S ++ L
Sbjct: 72 --LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
Query: 149 VPGGRMV 155
V GG +
Sbjct: 130 VTGGIIT 136
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 60.8 bits (147), Expect = 2e-11
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ A + P + M+ LL + PG R+L+ G+GSG LT LA G +G V E
Sbjct: 73 MKRSATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR 130
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
+ +N+ + + + L V +
Sbjct: 131 PHHLAQAERNVRAFWQVENVRFHLGKLEEAEL------EEAAYDGVALDLMEPWKVLEKA 184
Query: 145 LDQLVPGGRMVMPVG 159
L P +V +
Sbjct: 185 ALALKPDRFLVAYLP 199
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 57.8 bits (139), Expect = 2e-10
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI D + ++ ++PG IL++G GSG +++ + Y +G + VE
Sbjct: 92 QIISEIDA------SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER 143
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSW 143
+ + ++ N+ + + +A F VI +
Sbjct: 144 DEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-------DQMYDAVIADIPDPWNHVQK 196
Query: 144 LLDQLVPGGRMVMPVGEPFKGQNLTIIDKL-ADGYTIVTTV--------VRGVRTNPLYR 194
+ + PG + P Q+ + L A G + TV VR T P
Sbjct: 197 IASMMKPGSVATFYL--PNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASD 254
Query: 195 DR 196
D
Sbjct: 255 DL 256
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 56.9 bits (137), Expect = 4e-10
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
I P + L + R+L+ G+GSG L A L+ +AG VE
Sbjct: 68 FERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWL 144
+ A+ ++K + G + + H + ++ W Y +
Sbjct: 126 YKTAQKNLKKFNLGK---NVKFFNVDFKDAEVPE---GIFHAAFVDVREPW---HYLEKV 176
Query: 145 LDQLVPGGRMVMPV 158
L+ G + +
Sbjct: 177 HKSLMEGAPVGFLL 190
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 55.5 bits (134), Expect = 9e-10
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++L+ +K G +LD+G+G+G+ L+ M G +G+VY +
Sbjct: 20 RLELFDPE-KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAI 68
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 55.5 bits (133), Expect = 2e-09
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
GA +LD+G G+G + + G G+V GV ++ +E+A ++ +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 105 QGRVQFV 111
+ V+F+
Sbjct: 141 RSNVRFL 147
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 55.3 bits (132), Expect = 2e-09
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 15 NEPYRIKSRQIGYG-----ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
++ + R+ YG +P L +LK + G +LD+G G+LT +A
Sbjct: 6 AAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIA 65
Query: 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
GP R+ G++ L S+ +NI SE
Sbjct: 66 CKWGP-SRMVGLDIDSRLIHSARQNIRHYLSE 96
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 53.9 bits (129), Expect = 5e-09
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
A +++ H L+ ++PG + + G L Y A P ++ G++
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGID 150
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 52.5 bits (125), Expect = 2e-08
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 10/149 (6%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E +
Sbjct: 79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADH 136
Query: 88 AESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGS-TRVIQSCWTKEEYNSWLLD 146
AE + +N+ P GS R + E +
Sbjct: 137 AEHARRNVSG-----CYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSR 191
Query: 147 QLVPGGRMVMPVGEPFKGQNLTIIDKLAD 175
LV GG +++ V Q I++ L
Sbjct: 192 LLVAGGVLMVYV--ATVTQLSRIVEALRA 218
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 51.3 bits (123), Expect = 2e-08
Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 16/131 (12%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ H+ A + L KP + DIG GSG + P+ E E E
Sbjct: 8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRER 64
Query: 91 SIKNIDKGNSELLDQGRVQFV---AYFWLRHLLLTNPHGSTRV-IQSCWTKEEYNSWLLD 146
+ N L V A + NP + I T +
Sbjct: 65 ILSNAIN-----LGVSDRIAVQQGAPRAFDD-VPDNPD---VIFIGGGLTAPGVFAAAWK 115
Query: 147 QLVPGGRMVMP 157
+L GGR+V
Sbjct: 116 RLPVGGRLVAN 126
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 51.6 bits (123), Expect = 3e-08
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPG +IL+IG G G L+A LA G G V G+
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 50.9 bits (121), Expect = 4e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ A +L+ L + +K G RIL +G SG + ++ + GP GR+YGVE + +
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 95 IDK 97
+
Sbjct: 122 VRD 124
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 50.6 bits (121), Expect = 4e-08
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
LEL+ + GA +LD+GS YL G E V +S++KN++
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 51.1 bits (122), Expect = 5e-08
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 33 SPHIHAQMLELLKD---KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ + + L + KI I+D G G GYL L + + G++
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 54
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 50.7 bits (121), Expect = 5e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L+ + + + GAR+LD+GS YL G E V +S++KN+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 49.5 bits (118), Expect = 8e-08
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKG 98
+ L + + + ++D G+G T A++AG +VY E + + ++
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 99 NSELLDQGRVQFVAY-----FWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
N+EL+ G Y L P VI T E +LD+L GGR
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130
Query: 154 MV 155
+
Sbjct: 131 LA 132
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 49.4 bits (118), Expect = 1e-07
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 17/131 (12%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L + G + DIG GSG ++ GR +E + E+
Sbjct: 38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIEN 92
Query: 91 SIKNIDKGNSELLDQGRVQFV---AYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQ 147
KNID R++ V A L L P V + L +
Sbjct: 93 IQKNIDT----YGLSPRMRAVQGTAPAALAD--LPLPE---AVFIGGGGSQALYDRLWEW 143
Query: 148 LVPGGRMVMPV 158
L PG R+V
Sbjct: 144 LAPGTRIVANA 154
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 49.8 bits (119), Expect = 1e-07
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 40/146 (27%)
Query: 30 DISSPHIHA--QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
P + + ILD+G+G+G L+A L PE V
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLM-EKYPEATFTLV------ 74
Query: 88 AESSIKNIDKGNSELLDQGRVQF-----------------VAYFWLRHLLLTNPHGSTRV 130
+ S K ++ + +V++ V+ + HL +
Sbjct: 75 -DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL---EDEDKKEL 130
Query: 131 IQSCWTKEEYNSWLLDQLVPGGRMVM 156
+ + L G +
Sbjct: 131 YKRSY----------SILKESGIFIN 146
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 49.4 bits (117), Expect = 2e-07
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESS 91
++ E + + G R + IG G LT L+++ G RV VE ++AE S
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS 162
Query: 92 IKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWT--KEEYNSWLLDQLV 149
K I+ + V + + + ++ + K + +
Sbjct: 163 RKVIEGLGVD-----GVNVI----TGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVD 213
Query: 150 PGGRMVMPVGEPFKG 164
R++ +
Sbjct: 214 TETRIIYRTYTGMRA 228
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 48.7 bits (116), Expect = 2e-07
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
LE + I RI DIGS YL C A E V +S+ K +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 48.4 bits (115), Expect = 4e-07
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
PGA++L+ G G G T LA P+ + ++ S ++++K G
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDI-------SPESLEKARENTEKNGI 86
Query: 107 -RVQFV 111
V+F+
Sbjct: 87 KNVKFL 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 47.6 bits (113), Expect = 4e-07
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L+ ++ + DIG+GS ++ + + P GR++ +E +
Sbjct: 23 ITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGF 79
Query: 91 SIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVP 150
N+ K V V F L + S EE + +L
Sbjct: 80 IRDNLKK-----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKS 134
Query: 151 GGRMVMPV 158
G +V+
Sbjct: 135 EGVIVLNA 142
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 46.6 bits (111), Expect = 7e-07
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
++ L + +D+G G+G +T LA RVY ++ E ++ N+ +
Sbjct: 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR 77
Query: 98 GNSELLDQGRVQFV---AYFWLRHL-----LLTNPHGST--RVIQSCWTKEEYNSWLLDQ 147
V + A L + + G +++ D+
Sbjct: 78 ----HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIK----------DK 123
Query: 148 LVPGGRMVMP 157
L PGGR+++
Sbjct: 124 LKPGGRIIVT 133
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 45.6 bits (108), Expect = 2e-06
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
RI D+G+G+G +A + V E E+AE + ++++ ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF-SA 90
Query: 107 RVQFV 111
R++ +
Sbjct: 91 RIEVL 95
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.9 bits (106), Expect = 4e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + +K A +LD+G G GY T L+ + GV
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGV 81
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 43.9 bits (104), Expect = 6e-06
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ L + I+D G G+G+ L A ++Y ++
Sbjct: 8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCID 46
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 44.5 bits (105), Expect = 7e-06
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNI 95
L K R+LDIG G G L GV+ +++ E +
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVV 86
Query: 96 DKGNSELLDQGRVQFVAYFWLRHLL--LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
E L +++ + H + L ++ C++K +
Sbjct: 87 KSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL-FELLSLCYSK----------MKYSSY 135
Query: 154 MVMPV 158
+V+
Sbjct: 136 IVIES 140
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 44.0 bits (104), Expect = 8e-06
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 33/138 (23%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-----------EHVM 85
+ ++ + ++ ILDIG GSG ++ +A V G+
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGIDINSEAIRLAETAAR 73
Query: 86 E--LAESSIKNID--KGNSELLDQGRVQFVAY---FWLRHLLLTNPHGSTRVIQSCWTKE 138
L + + + N+ L F +L + +P +R+I+ +
Sbjct: 74 SPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTS--VPDPKERSRIIKEVFRV- 130
Query: 139 EYNSWLLDQLVPGGRMVM 156
L PG + +
Sbjct: 131 ---------LKPGAYLYL 139
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 44.3 bits (104), Expect = 9e-06
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + +++ + ++D+G G G T +A P ++ G +
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 43.8 bits (103), Expect = 1e-05
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 34 PHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
++ Q + + +K R++D+G G G L L + E ++ GV+ E +
Sbjct: 11 ISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIA 69
Query: 92 IKNIDKGNSELLDQGRVQFV 111
+ +D+ R+Q +
Sbjct: 70 QERLDRLRLPRNQWERLQLI 89
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 43.6 bits (103), Expect = 1e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESS 91
+ +A LLK K +LDIG SG L A + RV G+E E A+
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGAL---GAAIKENGTRVSGIEAFPEAAEQAKEK 73
Query: 92 IKNIDKGNSELLD 104
+ ++ G+ E +D
Sbjct: 74 LDHVVLGDIETMD 86
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 43.5 bits (102), Expect = 1e-05
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ +S P L + P R+L+ G G G A A R
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAY 76
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 43.1 bits (101), Expect = 2e-05
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ L + I+ G ++L +G+ SG + ++ + G+ YGVE
Sbjct: 66 LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 42.9 bits (101), Expect = 2e-05
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 23/128 (17%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID-- 96
L+ GA+ILD G G G + L+ G V G +++ A+
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLS-KQGH--DVLGTDLDPILIDYAKQDFPEARWV 94
Query: 97 KGNSELLDQGRVQF---VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGR 153
G+ + F V+ + L G + + L GR
Sbjct: 95 VGDLSVDQISETDFDLIVSAGNVMGFL--AEDGREPALANIH----------RALGADGR 142
Query: 154 MVMPVGEP 161
V+ G
Sbjct: 143 AVIGFGAG 150
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 43.1 bits (102), Expect = 2e-05
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ AQ +++L + ++L++G+ +GY ++ +G+V +
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 89 ESSIKNIDK 97
+ + +
Sbjct: 99 KHAHPYWRE 107
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ +S+ + Q++ + + + +++G +GY A +G++ ++ E
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 89 ESSIKNIDKGN 99
E + I K
Sbjct: 109 EIGLPFIRKAG 119
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 42.3 bits (99), Expect = 3e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
D + L + P ++D G+G T L+ P RV G+
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS-QFFP--RVIGL 84
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 42.1 bits (99), Expect = 4e-05
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 33 SPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ H H L L+ + + R+LDIG+G+G+ + GV
Sbjct: 2 AHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGV 49
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 41.9 bits (99), Expect = 4e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ + AQ+L LL ++ +++DIG+ +GY + +G + + +
Sbjct: 44 YAMQTAPEQAQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST 102
Query: 89 ESSIKNIDK 97
+ + +K
Sbjct: 103 ALAKEYWEK 111
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 42.0 bits (99), Expect = 4e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+++ Q L +L I ++IG +GY A +G++ ++ E
Sbjct: 59 NIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 89 ESSIKNIDKGN 99
E + I K
Sbjct: 118 ELGLPVIKKAG 128
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 41.9 bits (99), Expect = 5e-05
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ Q L +L RI++IG+ +GY + C A +G++ + E
Sbjct: 40 ANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 89 ESSIKNIDK 97
+ K +
Sbjct: 99 NVARKYWKE 107
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 41.4 bits (98), Expect = 6e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ L+LL IL+IG+ GY T LA GRV +E + A
Sbjct: 38 PAHDVSPTQGKFLQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 89 ESSIKNIDK 97
+ + NI++
Sbjct: 97 DIARSNIER 105
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 41.6 bits (98), Expect = 6e-05
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
D AQ+L L I+ + LD+G+ +GY LA +GRV E +
Sbjct: 49 GDSMMTCEQAQLLANLARLIQA-KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 89 ESSIKNIDK 97
E +
Sbjct: 108 ELGRPLWRQ 116
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 41.0 bits (96), Expect = 7e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
+ L ++ GA+IL++G G+GY +
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAML 62
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 40.9 bits (96), Expect = 8e-05
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 30 DISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHV 84
I+ + E + ++ I G +DIGSG G L+ LA + + + +H+
Sbjct: 22 KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHM 78
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFV 111
E+A KNI N R+Q V
Sbjct: 79 NEIAL---KNIADANLN----DRIQIV 98
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 41.1 bits (97), Expect = 8e-05
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A + AQ L LL ++L+IG GY +A P+G++ +
Sbjct: 52 APMQISPEQAQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 89 ESSIKNIDK 97
+ K K
Sbjct: 111 AIAKKYWQK 119
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 41.1 bits (97), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
Q L LL + RIL+IG+ GY T +A +G++ +E A
Sbjct: 43 PAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 89 ESSIKNIDK 97
+ + +N+
Sbjct: 102 QVARENLQL 110
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 41.0 bits (96), Expect = 1e-04
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
I ++ LL + G+ I DIG+G+G + L A VY VE + + +
Sbjct: 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVAL---ANQGLFVYAVEPSIVMRQ 70
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 40.7 bits (95), Expect = 1e-04
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-------EHVMELAE 89
+ LL +K ++LD+ G G + L V GV E A+
Sbjct: 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAK 81
Query: 90 SSIKNID--KGNSELLD 104
S N++ G++ L
Sbjct: 82 SRESNVEFIVGDARKLS 98
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 41.4 bits (96), Expect = 1e-04
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 10 FTRVVNEPYRIKSRQIG----YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ V +P ++ + + YG +S + AQM++ +K + +D+GSG G +
Sbjct: 133 YNHSVTDPEKLNNYEPFSPEVYGE--TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVV 188
Query: 66 ACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSEL-LDQGRVQFVAYFWLRHLLL 121
+A + YGVE + AE+ + K +L
Sbjct: 189 LQVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 247
Query: 122 TNPHGSTRVIQSCW----TKEEYNSWLLDQLVPGGRMV 155
++ + + + + + GGR+V
Sbjct: 248 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 41.0 bits (96), Expect = 1e-04
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
SP + + L + D + + I DIG G+G T LA G+V G+
Sbjct: 30 SPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGL 75
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 40.8 bits (95), Expect = 1e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ A ++ LK+ IKPG +L +G SG + ++ + G EG+++G+E
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+ L L P ARIL+IG+ GY +A A PE + +E E + K++
Sbjct: 43 MESLLHLLKMAAP-ARILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKA 100
Query: 98 GN 99
Sbjct: 101 LG 102
>3lpm_A Putative methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, nysgxrc; 2.40A {Listeria
monocytogenes}
Length = 259
Score = 40.5 bits (95), Expect = 1e-04
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+I+D+ SG+G + L+ + ++ GVE LA+ + +++
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSV 92
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 40.6 bits (95), Expect = 1e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L + + D+G G G T L + G+
Sbjct: 24 DLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRY-GVNVITGI 63
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 40.2 bits (94), Expect = 2e-04
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
Y + +H M+ +PG +L++GS G + + + VE
Sbjct: 20 YAYNFDFDVMHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVE 71
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L+LL +PG ILD+G G+G LT + A V G
Sbjct: 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKI---AQSGAEVLGT 85
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 39.9 bits (93), Expect = 2e-04
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 28/160 (17%)
Query: 29 ADISSPHIHAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
P++ + L+ +L++ SG+GY T +++G RV ++ E
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT---RHLSGLADRVTALDGSAE 79
Query: 87 -LAESSIKNIDK-----GNSELLDQGRVQF---VAYFWLRHLLLTNPHGSTRVIQSCWTK 137
+AE+ +D + R Q+ WL H+ +S
Sbjct: 80 MIAEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVP---DDRFEAFWESVR-- 133
Query: 138 EEYNSWLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGY 177
+ PGG + + + D +
Sbjct: 134 --------SAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 39.7 bits (92), Expect = 2e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPGA++L +G+ SG + ++ + GP+G VY VE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 39.5 bits (92), Expect = 2e-04
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +LE + +K +L+ G G+G LT + VYG+E
Sbjct: 34 YEDILEDVVNK--SFGNVLEFGVGTGNLT---NKLLLAGRTVYGIE 74
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A + L + ++D+G GSG +T +A VY ++++ E + +N+ K
Sbjct: 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK 79
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 39.8 bits (93), Expect = 3e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ + + + + A+I DIG G+G T LA G++ G+
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 39.2 bits (91), Expect = 3e-04
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+++ Q L + +K +++D+G G G L + L E ++ GV+
Sbjct: 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVD 60
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 39.2 bits (91), Expect = 4e-04
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIK 93
+ LL+ +++P RIL +G G+ L+ L ++ G V V V+ ++
Sbjct: 29 FSSFRALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDYSSVVVAAMQACYA 86
Query: 94 NIDKGNSELLDQGRVQF--------VAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLL 145
++ + E +D ++ F + L LL T + T ++ S +
Sbjct: 87 HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVS 146
Query: 146 DQLVPGGRMV 155
LVPGGR +
Sbjct: 147 RVLVPGGRFI 156
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ A+ LK + PG +L++G+G+GY L P + GVE
Sbjct: 21 YVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 38.7 bits (91), Expect = 4e-04
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++L LL +P ++ G G G + A RV ++ + E +
Sbjct: 40 VDRQTGRLLYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR 98
Query: 93 KNIDKGN 99
+ +
Sbjct: 99 RMLHDNG 105
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 39.0 bits (91), Expect = 4e-04
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 33 SPHIHAQ------MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ IHA+ ++++ +K +LD+ +G G++ A +V
Sbjct: 16 TSQIHAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAF 65
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 39.4 bits (91), Expect = 5e-04
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + Q +E I+ + ++D G GSG L L + GV+
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVD 753
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 39.1 bits (91), Expect = 5e-04
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 22/121 (18%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGNSELLDQGR 107
I+D+G G+G + L P+ +V V+ +A SS N++ E LD R
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVD-ESPMAVASSRLNVETNMPEALD--R 276
Query: 108 VQFVAYFWLRH-------LLLTNP--HGSTRVIQSCWTKEEYNSWLLD---QLVPGGRMV 155
+F+ L +L NP H + T L G +
Sbjct: 277 CEFMINNALSGVEPFRFNAVLCNPPFHQQHAL-----TDNVAWEMFHHARRCLKINGELY 331
Query: 156 M 156
+
Sbjct: 332 I 332
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 38.5 bits (89), Expect = 5e-04
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 33 SPHIHAQM-LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELA 88
A +E+ D G ++D G+G+G L AC +Y+ G E V + +E A
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETA 90
Query: 89 ESSIKNID 96
+ + ++
Sbjct: 91 KRNCGGVN 98
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 38.9 bits (90), Expect = 5e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 32/122 (26%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y + IH +ML KDKI+ +LD+G G+G L + A
Sbjct: 29 YFSSYGHYGIHEEML---KDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGIL-SMFAAK 84
Query: 72 AGPEGRVYGVEH--VMELAESSIKN--------IDKGNSELLD--QGRVQFVAYFWLRHL 119
AG + +V GV+ ++ A I+ + KG E + +V + W+ +
Sbjct: 85 AGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143
Query: 120 LL 121
LL
Sbjct: 144 LL 145
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 38.7 bits (90), Expect = 6e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 35 HIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ L++++ +LDIG G GY T A A PE +G+
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-DALPEITTFGL 115
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 38.7 bits (90), Expect = 6e-04
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV----EHVMELAESSI 92
H + L++ +K R+LD+G G+G + ++ V V E + E +
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKWS---LFLQERGFEVVLVDPSKEMLEVAREKGV 97
Query: 93 KNIDKGNSELLD 104
KN+ + +E L
Sbjct: 98 KNVVEAKAEDLP 109
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 37.9 bits (89), Expect = 7e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + + D+G+GSG L A A+ G V
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLAT 89
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 38.0 bits (89), Expect = 8e-04
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +++ L IL+IG+ GY + A + + V +E + + +
Sbjct: 55 VDRLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAK 112
Query: 93 KNIDKGN 99
+N+ +
Sbjct: 113 QNLATYH 119
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
I P ++ + L+ ++ +LD G+G + G + YG+
Sbjct: 6 IRQPQLY-RFLKYC-NESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGI 52
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 37.7 bits (88), Expect = 0.001
Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEG 76
R + + G + + Q+L L + I +G + +
Sbjct: 26 REDAAEFG---LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT 82
Query: 77 RVYGVEHVMELAESSIKNIDK 97
+ ++ E + +
Sbjct: 83 TLTCIDPESEHQRQAKALFRE 103
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 37.5 bits (87), Expect = 0.001
Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
+++ L+ + +LD+G+ +G +T L V + + A S + +
Sbjct: 13 LMDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTD-LNIRALESHRGGNLVR 67
Query: 100 SELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCW----TKEEYNSWLLDQLVPGGRMV 155
++LL + V +++ NP E +D + G +
Sbjct: 68 ADLLCSINQESV------DVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYL 121
Query: 156 MPVGEPFKGQNLTIIDKLAD-GYTIVTTVVR 185
+ + + ++ +L + GY VR
Sbjct: 122 LVIEA---NRPKEVLARLEERGYGTRILKVR 149
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 41 LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
L +KPG RILD+GSGSG + A G G+
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGI 65
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 37.8 bits (87), Expect = 0.001
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IK ++IL +G+ +G + +A + +G VY +E
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIE 105
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 37.8 bits (88), Expect = 0.001
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 22 SRQIGYGADISSPHIHAQ----MLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPE 75
+ GY D + + + + ++ G R+LD+G G G LA
Sbjct: 27 NLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD-- 84
Query: 76 GRVYGV 81
RV G+
Sbjct: 85 VRVTGI 90
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.7 bits (88), Expect = 0.001
Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ Q+++ + + P + +L++G+ GY +A + P R+ +E + A
Sbjct: 40 MNVGDAKGQIMDAVIREYSP-SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI 98
Query: 91 SIKNIDK 97
+ + ++
Sbjct: 99 TQQMLNF 105
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 37.6 bits (87), Expect = 0.001
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
A + L++G G+G + L R ++
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIALPL---IARGYRYIALD 68
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 37.6 bits (87), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
++ ++L D +LD+G G G+ A +V G+
Sbjct: 33 WHELKKMLPDF--NQKTVLDLGCGFGWHCIYAA--EHGAKKVLGI 73
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 37.6 bits (88), Expect = 0.001
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
L+ L ++PG ++LD+G+GSG L A A G G+ GV
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGV 148
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 37.9 bits (87), Expect = 0.001
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
S + ML D+++ G +LD+G+GSG L A AG
Sbjct: 33 SFLYHQKDML---SDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSA-QAGAR- 87
Query: 77 RVYGVEH--VMELAESSIK--------NIDKGNSELLDQG-RVQFVAYFWLRHLLL 121
+VY VE + + A + +K + +G+ E + +V + W+ + LL
Sbjct: 88 KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLL 143
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 36.7 bits (85), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L + + R+LD+G G G+L +A GV
Sbjct: 44 ILLAILGR--QPERVLDLGCGEGWLL---RALADRGIEAVGV 80
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ +L + G RI+D+G G G+ V G+
Sbjct: 35 LRAMLPEV--GGLRIVDLGCGFGWFCRWAH--EHGASYVLGL 72
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 36.3 bits (84), Expect = 0.003
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIKNID--KGNSE 101
+ P R ++IG G+G L GVE + E+A + + KG +E
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARK--RGVFVLKGTAE 94
Query: 102 LL 103
L
Sbjct: 95 NL 96
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDK 97
+L L ++LD+G G+G L+ A + P+ R+ + V A E+S +
Sbjct: 188 LLSTLTPH--TKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCD-VSAPAVEASRATLAA 242
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 36.6 bits (84), Expect = 0.004
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 7 KNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA 66
V+N + + + + Y ++ P+ + +++D G+ G A
Sbjct: 187 VQTLYAVLN--FHL-TCEPEYYHEVERPYST-LYFRSGLLRFSDSEKMVDCGASIGESLA 242
Query: 67 CLA-YMAGPEGRVYGVE 82
L G RV+ +E
Sbjct: 243 GLIGVTKGKFERVWMIE 259
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
G IS+ ++E ILD+GSG+G T LA
Sbjct: 20 LGTVISAEDPDRVLIEPWATG--VDGVILDVGSGTGRWTGHLA 60
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 36.2 bits (83), Expect = 0.004
Identities = 28/165 (16%), Positives = 46/165 (27%), Gaps = 21/165 (12%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
L++ K G +LD+G G G L Y G YGV+ +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDL--LKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 114
Query: 103 LDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLL----DQLVPGGRMVMPV 158
R Q + + S ++ E L PGG +M V
Sbjct: 115 KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174
Query: 159 GEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYY 203
I+ +G +N Y+ ++ +
Sbjct: 175 ---------------PSRDVILERYKQGRMSNDFYKIELEKMEDV 204
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 35.9 bits (83), Expect = 0.006
Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 18/139 (12%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
P + +L L +PG R+LD +GSG + A GP VY + + + +
Sbjct: 189 PVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246
Query: 94 NIDKGNSELLDQGRVQFVAYFWLRH---LLLTNP-----HGSTRVIQSCWTKEEYNSWL- 144
+ R +L NP G + Y +L
Sbjct: 247 AALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGL-----FHLYWDFLR 301
Query: 145 --LDQLVPGGRMVMPVGEP 161
L L PGGR+ + P
Sbjct: 302 GALALLPPGGRVALLTLRP 320
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 35.4 bits (81), Expect = 0.008
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 32/126 (25%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
+ IH ++L KD+++ +LD+GSG+G L A AG
Sbjct: 36 AHFGIHEELL---KDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGIL-CMFAAKAGAR- 90
Query: 77 RVYGVE--HVMELAESSIKN--------IDKGNSELLDQG--RVQFVAYFWLRHLLLTNP 124
+V G+E + + A +K I KG E ++ +V + W+ + L
Sbjct: 91 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 150
Query: 125 HGSTRV 130
+T +
Sbjct: 151 MLNTVL 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.010
Identities = 31/225 (13%), Positives = 62/225 (27%), Gaps = 73/225 (32%)
Query: 7 KNFFTRVVNEPYR-------------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+ F +++ EP + + +GY + + P Q ++L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-------L 86
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-- 111
L Y+ G + + H LA ++ D + + +
Sbjct: 87 CLT------EFEN--CYLEGND--I----HA--LAAKLLQENDT------TLVKTKELIK 124
Query: 112 AYFWLRHLL---LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRMVMPVGEPFKGQ--N 166
Y R + S L + G ++ + F GQ
Sbjct: 125 NYITARIMAKRPFDKKSNSA---------------LFRAVGEGNAQLVAI---FGGQGNT 166
Query: 167 LTIIDKLADGYTIVTTVVR------GVRTNPLYRDRFQQKKYYTE 205
++L D Y +V + L R +K +T+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Score = 31.2 bits (70), Expect = 0.28
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 27/107 (25%)
Query: 22 SRQIGYGADI--SSP---HIHAQMLELLKDKIKPGARILDI-------------GSGSGY 63
S++ G G D+ +S + + KD G ILDI G
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 64 LTACLAYMA-----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105
+ Y A +G++ + E+ E S + LL
Sbjct: 1684 IRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 35.2 bits (82), Expect = 0.010
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
LEL++ + DIG+GSG + +A + V+ +E+A
Sbjct: 114 LALELIRKY--GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIA------- 162
Query: 96 DKGNSELLD-QGRVQFV 111
+ N+E R
Sbjct: 163 -RKNAERHGVSDRFFVR 178
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 34.6 bits (80), Expect = 0.010
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
++E + ILD+G G G + LA + + A + + +NI
Sbjct: 44 LVENVVVD--KDDDILDLGCGYGVIGIALA-DEVKS--TTMAD-INRRAIKLAKENIKLN 97
Query: 99 NSELLDQGRVQFVAYFWLRH-------LLLTNP--HGSTRVIQSCWTKEEYNSWLLDQ-- 147
N LD ++ V + ++TNP V+ ++++
Sbjct: 98 N---LDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHR----------IIEEGK 144
Query: 148 --LVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 185
L G + + V + +G ++ + D + V TV
Sbjct: 145 ELLKDNGEIWV-VIQTKQGAK-SLAKYMKDVFGNVETVTI 182
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 34.4 bits (80), Expect = 0.011
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
+ + LK G R++D+G+GSG + +A A P V V + +A
Sbjct: 20 EAIRFLKRM-PSGTRVIDVGTGSGCIAVSIAL-ACPGVSVTAVDLSMDALAVA------- 70
Query: 96 DKGNSELLDQGRVQFVAYFWLRHLLLTNPHG 126
+ N+E V + A + L+ G
Sbjct: 71 -RRNAERF-GAVVDWAAADGIEWLIERAERG 99
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 34.8 bits (80), Expect = 0.012
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 26 GYGADISSPHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+G + S ++L D ++ +++LDIGSG G + G +G++
Sbjct: 30 IFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAH--THGIDI- 86
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFV 111
++ N + ++ F
Sbjct: 87 ------CSNIVNMANERVSGNNKIIFE 107
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 34.4 bits (79), Expect = 0.013
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 37/124 (29%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ L+IG +G T LA P R+ + + + I +
Sbjct: 50 GAVSNGLEIGCAAGAFTEKLA----PHCKRLTVI-------DVMPRAIGRACQRTKRWSH 98
Query: 108 VQFVAYFWLRHLL---------------LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGG 152
+ + A L+ L + I + + L PGG
Sbjct: 99 ISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNM----------VKMLAPGG 148
Query: 153 RMVM 156
+V
Sbjct: 149 HLVF 152
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 34.8 bits (80), Expect = 0.013
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
EL ++ A+ LD+G+G G L G + + +A K
Sbjct: 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCL----NIAPVQNK 119
Query: 94 NIDKGNSELLDQGRVQFV 111
++ N++ +
Sbjct: 120 RNEEYNNQAGLADNITVK 137
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 34.0 bits (78), Expect = 0.015
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
H+++LE +K + + LD+G G+G + LA
Sbjct: 21 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA 51
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 34.7 bits (79), Expect = 0.017
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 21/88 (23%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y M+ +D ++ +LD+G GSG L + A
Sbjct: 123 YFQFYGYLSQQQNMM---QDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL-SFFAAQ 178
Query: 72 AGPEGRVYGVEHVMELAESSIKNIDKGN 99
AG ++Y VE +A+ + + N
Sbjct: 179 AGAR-KIYAVEA-STMAQHAEVLVKSNN 204
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 33.9 bits (77), Expect = 0.020
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 24/144 (16%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ L+ P R L G G G+ + MA PE V G++ S
Sbjct: 49 QGRATPLIVHLVDTSSLPLGRALVPGCGGGHD---VVAMASPERFVVGLDI-------SE 98
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLT-NPHGSTRVIQSC--------WTKEEYNSW 143
+ K N + ++ + +++ + T P +I + +
Sbjct: 99 SALAKANETYGSSPKAEYFS--FVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKS 156
Query: 144 LLDQLVPGGRMVM---PVGEPFKG 164
+ + L P G ++ P+ + G
Sbjct: 157 MYELLKPDGELITLMYPITDHVGG 180
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 33.9 bits (78), Expect = 0.020
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVE 82
+ + ++++PG RI DIG G+G T LA + V GV+
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLA-----DHYEVTGVD 61
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 34.1 bits (79), Expect = 0.021
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
AQ +L DK ++PG +LDIG G G + + Y V
Sbjct: 56 AQYAKRKLALDKLNLEPGMTLLDIGCGWGST---MRHAV----AEYDVN 97
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 34.1 bits (79), Expect = 0.021
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
AQ+ ++L K ++PG +LD+G G G + Y V
Sbjct: 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGAT---MMRAV----EKYDVN 89
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 34.2 bits (78), Expect = 0.022
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 21/88 (23%)
Query: 27 YGADISSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYM 71
Y M+ +D ++ +LD+G GSG L + A
Sbjct: 15 YFQFYGYLSQQQNMM---QDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL-SFFAAQ 70
Query: 72 AGPEGRVYGVEHVMELAESSIKNIDKGN 99
AG ++Y VE +A+ + + N
Sbjct: 71 AGAR-KIYAVEA-STMAQHAEVLVKSNN 96
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 33.9 bits (77), Expect = 0.023
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
IH +ML +D ++ +LD+G G+G L + A G +
Sbjct: 8 DHYGIHEEML---QDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGIL-SMFAAKHGAK- 62
Query: 77 RVYGVEHVMELAESSIKNID-----------KGNSELLDQG--RVQFVAYFWLRHLLLTN 123
V GV+ + E + + ++ +G E + +V + W+ + LL
Sbjct: 63 HVIGVDM-SSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 124 P 124
Sbjct: 122 S 122
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 34.0 bits (79), Expect = 0.024
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
Q L L ++ RILD+G+G+G + LA P+ + V + LA
Sbjct: 101 QALARLPEQ---PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLA------- 149
Query: 96 DKGNSELLDQGRVQFVAYFWLR-------HLLLTNP 124
+ N++ L + + W ++++NP
Sbjct: 150 -QRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNP 184
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 33.7 bits (78), Expect = 0.026
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 42 ELL--KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID 96
+ K ++ G L+IG+G + A +A +V E E A +NI+
Sbjct: 45 RYIFLKTFLRGGEVALEIGTGHTAMMALMAE-KFFNCKVTATEVDEEFFEYAR---RNIE 100
Query: 97 KGNSELLDQGRVQFVAYFWLR-------HLLLTNP 124
+ NS R+ ++ ++ + P
Sbjct: 101 RNNSN----VRLVKSNGGIIKGVVEGTFDVIFSAP 131
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 33.9 bits (78), Expect = 0.027
Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 44/153 (28%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELA 88
S + LE++ R+LDIG +G + T C+ Y E + + +E+
Sbjct: 161 HFYSDQSFGKALEIVFSH--HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMM 218
Query: 89 ESSIKNIDKGNSELLDQGRVQFVA--YF-------------WLRHLLLTNPHGSTRVIQS 133
+ R+ W+ L
Sbjct: 219 RKQTAGLSGS-------ERIHGHGANLLDRDVPFPTGFDAVWMSQFL----D-------- 259
Query: 134 CWTKEEYNSWLL----DQLVPGGRMVMPVGEPF 162
C+++EE +L + ++ + E
Sbjct: 260 CFSEEE-VISILTRVAQSIGKDSKVY--IMETL 289
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 33.6 bits (77), Expect = 0.028
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLA 69
+L++ + + +LD+ G+G
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFT 59
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.1 bits (78), Expect = 0.028
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
H Q+ + + IKPG +++I
Sbjct: 174 EAHRQVRKYVMSWIKPGMTMIEI 196
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 33.3 bits (75), Expect = 0.033
Identities = 15/137 (10%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIK 93
+I + L + + + + D+G G T + + P ++ G+ + ++ ++
Sbjct: 43 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGI----DNSQPMVE 98
Query: 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNP-HGSTRVIQSCWTKEEYNSW--LLDQLVP 150
+ + + V+ + + +Q ++ + + L P
Sbjct: 99 RCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNP 158
Query: 151 GGRMVMPVGEPFKGQNL 167
G +V+ F+ +
Sbjct: 159 NGVLVLSEKFRFEDTKI 175
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 33.4 bits (76), Expect = 0.036
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 20/131 (15%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGA---DISSPHIHAQMLELLKDKIKPGARILDIGSGS 61
+ F R++ Y + A D +S + + E L + G ++LD+G+G
Sbjct: 185 LWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGY 244
Query: 62 GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLL- 120
G LT LA M V GVE + S K ++ + + Q + L
Sbjct: 245 GALTLPLARMG---AEVVGVEDDLASVLSLQKGLEA------NALKAQALHSDVDEALTE 295
Query: 121 -------LTNP 124
+TNP
Sbjct: 296 EARFDIIVTNP 306
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 33.3 bits (77), Expect = 0.037
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
AQ ++L DK +KPG +LDIG G G + + V
Sbjct: 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTT---MRRAV----ERFDVN 115
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 33.3 bits (75), Expect = 0.052
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
P+ + + + + +K G +D+GSG G A G +G E + + ++ +I
Sbjct: 227 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLTI 283
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQS--------CWTKE--EYNS 142
++ G F L+ + N + + Q + ++ +
Sbjct: 284 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 343
Query: 143 WLLDQLVPGGRMV 155
+L G +++
Sbjct: 344 KILQTAKVGCKII 356
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
3pb3_A* 3mte_A*
Length = 225
Score = 32.8 bits (74), Expect = 0.056
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 44 LKDKIKPGARI-LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
L + I R+ +D+G+G G LA + G++ V E K
Sbjct: 17 LTEIIGQFDRVHIDLGTGDGRNIYKLA-INDQNTFYIGIDPVKENLFDISK 66
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 32.7 bits (74), Expect = 0.061
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
G + I + +R LD G+G G +T L + +
Sbjct: 70 GMD-HVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT-----TDLL- 122
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFV 111
E +++ EL +F+
Sbjct: 123 ---EPVKHMLEEAKRELAGMPVGKFI 145
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 32.8 bits (74), Expect = 0.067
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 23/125 (18%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
I+ G +++D+ G G L A + +E E A + N LL
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAV-----AARHNIPLLLNEG 142
Query: 107 -RVQFVA-------------YFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGG 152
V + + ++ G+ + + + E L +L+P
Sbjct: 143 KDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFC 202
Query: 153 RMVMP 157
++
Sbjct: 203 SSILA 207
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.4 bits (73), Expect = 0.070
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTACLA 69
+ ++ ++ K +IL IG G+G + +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL 71
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 32.4 bits (74), Expect = 0.073
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
H + ++ ++PG +L+I
Sbjct: 55 EAHRRARYRVQSIVRPGITLLEI 77
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 32.6 bits (75), Expect = 0.074
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
I ++ E +PG +L++
Sbjct: 11 EIAKKVREKAIKLARPGMLLLEL 33
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 32.2 bits (73), Expect = 0.084
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
Y I ++ E +L++ +G G LT
Sbjct: 59 YRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL 101
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 32.3 bits (73), Expect = 0.087
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + M+ L + G R+L+ G G R GVE
Sbjct: 25 PEVVDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE 71
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 32.1 bits (73), Expect = 0.092
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLA 69
L++ A +LD+ G+G LA
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLA 69
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 31.8 bits (72), Expect = 0.12
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+++ L P ++D G G G R +G
Sbjct: 105 AEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAH-------RRFGSR 142
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 32.0 bits (73), Expect = 0.12
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMA---GPEGRVYGVE 82
A +LE + K K ILD G+ LT + + + GV+
Sbjct: 119 AYLLEKVIQK-KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVD 166
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 31.9 bits (73), Expect = 0.13
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
P I++IG G + L + R G E +A + + +
Sbjct: 104 LTGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFEPSSGVAAKAREKGIR 151
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 31.8 bits (72), Expect = 0.14
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 5 DRKNFFT---RVVNEPYRIKSRQIGYGADISSPHIH----AQMLELL-KDKIKPGARILD 56
++ F + E R +R+ A++ L + ++ R+LD
Sbjct: 28 GKQEFERYKVSDITEVDRTAARRYLKEGRTDVGISVSRGAAKIRWLHERGYLRITGRVLD 87
Query: 57 IGSGSG---YLTACLAYMAGPEGRVYGVE 82
+G G G Y A + +G G+E
Sbjct: 88 LGCGRGGWSYYAAAQKEVMSVKGYTLGIE 116
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 31.7 bits (72), Expect = 0.16
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 35 HIHAQMLELLKDKIKPGARILDI 57
I ++L L + G +L +
Sbjct: 33 DIANRVLRSLVEASSSGVSVLSL 55
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 31.2 bits (71), Expect = 0.22
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 53 RILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
++D+ G G YL L G+++ + + A +I GRV+F
Sbjct: 182 TVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIH-------AHDLGGRVEFF 234
Query: 112 A 112
Sbjct: 235 E 235
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron
transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans}
SCOP: e.18.1.1
Length = 542
Score = 31.3 bits (70), Expect = 0.23
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 62 GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVAYFWLRHLL 120
G +A+ P + I + G+ + D +++ V + W
Sbjct: 281 GGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKA 340
Query: 121 LTNPHGSTRVIQSCWTKEEYNSWLLDQLVPGGRM 154
G T + + SW G +
Sbjct: 341 RAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAV 374
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 31.0 bits (70), Expect = 0.23
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLA 69
+D + R+LD+ G+G T LA
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELA 60
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 30.9 bits (70), Expect = 0.24
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLA 69
+E + LD+ G+G LT L
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLC 56
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 30.4 bits (68), Expect = 0.30
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ ++D G G T A RV ++ + N
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNN 119
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 30.4 bits (68), Expect = 0.32
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 47 KIKPGARILDIGSGSGYLTACLA 69
+ R+LD+ G+G + L
Sbjct: 54 RQHGCHRVLDVACGTGVDSIMLV 76
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.0 bits (68), Expect = 0.46
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 37 HAQML-ELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
AQ++ +L+ + ++LDI + G + A + E V+E+A+ + +
Sbjct: 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENAR- 209
Query: 95 IDKGNSELLDQGRVQFVA 112
R +A
Sbjct: 210 ------IQGVASRYHTIA 221
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 30.1 bits (67), Expect = 0.47
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 7 KNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA 66
+ F ++ P + + H ++ R +DIG+G+ +
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYI--HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYP 81
Query: 67 CLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L E + KN+++
Sbjct: 82 LLGA-TLNGWYFLATEVDDMCFNYAKKNVEQ 111
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 29.7 bits (66), Expect = 0.51
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 33 SPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
+ +++L L G + D+G+G+G L+ + G + V VE E +
Sbjct: 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GAK-EVICVEVDKEAVDVL 88
Query: 92 IKNIDK 97
I+N+ +
Sbjct: 89 IENLGE 94
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.8 bits (66), Expect = 0.52
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 17 PYRIKSRQIGYGADISSP--HIHAQMLELLKD----------KIKPGARILDIGSGSGYL 64
+ ++ G IH+ E + IK + ILD G G L
Sbjct: 4 NWDKLLKKYNQGQLSIEDLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPL 63
Query: 65 TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
L E +Y H ++ + I + +L + +F+
Sbjct: 64 A--LYQWNENEKIIY---HAYDIDRAEIAFLSSIIGKLKTTIKYRFL 105
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 29.7 bits (66), Expect = 0.53
Identities = 20/179 (11%), Positives = 44/179 (24%), Gaps = 19/179 (10%)
Query: 39 QMLELLKDKIKPGARILDIGSGSG-----YLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
++L I G+G Y +A + + + E
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 94 NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRV-----IQSCWTKEEYNSW---LL 145
I + F + + I + Y + L
Sbjct: 97 GIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS 156
Query: 146 DQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYYT 204
+ GG++++ + K + KL D T + N + ++ +
Sbjct: 157 ELTASGGKVLITTMDGDK------LSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVV 209
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 29.9 bits (67), Expect = 0.58
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELL--KDKIKPGARILDIG 58
+++ R E I SR++G ++ + ++ ++ LL + G +I
Sbjct: 256 QTEAEQERILARY--EESIIYSRRVG---NLYTGSLYLGLISLLENATTLTAGNQIGLFS 310
Query: 59 SGSG 62
GSG
Sbjct: 311 YGSG 314
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 29.2 bits (66), Expect = 0.63
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
G R +D+G+G G L+ + PE ++
Sbjct: 62 PYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFTLLD 96
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 29.1 bits (66), Expect = 0.97
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPE--GRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108
G +D+G GSG LT + A P G + E + +A ++ S LL RV
Sbjct: 168 GRSFVDVGGGSGELTKAIL-QAEPSARGVMLDREGSLGVARDNL-------SSLLAGERV 219
Query: 109 QFVA 112
V
Sbjct: 220 SLVG 223
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDI------GSGSGYLTACLAYMAGPEGRVYG 80
Y ++ +E+ K ++ P +L G G+ L AG +
Sbjct: 101 YQKGVT--------IEVQKRQLGPHDVVLLHDDVLATG-GTLLAAIELCETAGVKPENIY 151
Query: 81 VEHVMELAE 89
+ + E+
Sbjct: 152 INVLYEIEA 160
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 28.9 bits (65), Expect = 1.1
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 53 RILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111
+++D+G G G A L + + + + ++L + +E R++ +
Sbjct: 193 KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA-------AEKGVADRMRGI 245
Query: 112 A 112
A
Sbjct: 246 A 246
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 50 PGARILDIGSGSGYLTACLA 69
P +IL + G G LA
Sbjct: 29 PQGKILCLAEGEGRNACFLA 48
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.5 bits (64), Expect = 1.2
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ L IKP R++++ S
Sbjct: 117 TRDVCTELLPLIKPQGRVVNVSSIMSVRA 145
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 28.7 bits (65), Expect = 1.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 32 SSPHIHAQMLELLKDKIKPGAR 53
+P + ML ++D++ +
Sbjct: 245 GNPRVVKAMLANMRDELSDALK 266
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.4 bits (63), Expect = 1.5
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 31 ISSPHIHAQMLELL----KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
+ +P ++ ++ + L K ++LD+ G G +A P + +E
Sbjct: 35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSS 93
Query: 87 LAESSIKNIDKGNSELLDQ 105
L + + ++L +
Sbjct: 94 LYKFLNAKFEGSPLQILKR 112
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 28.4 bits (62), Expect = 1.6
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ LE ++ K K +LD+G G G L + G ++ ++A+ S+K
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGD--LLKWKKGRINKLVCT----DIADVSVKQ 72
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal,
antibiotic resistance, aminoglycoside,
S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces
SP}
Length = 218
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +LD+G+G G +A P V ++
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVA-RQNPSRLVVALD 58
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++P +L++G G+G +T L A +V E
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACE 57
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 2.5
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 18/111 (16%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAY-MAGPE-GRVYGVE 82
GA I Q++ +K G I I + + TA + P G+ G+
Sbjct: 1179 EAQGAGI-------QIIMQADLALKMGVPIYGIVAMAA--TATDKIGRSVPAPGK--GIL 1227
Query: 83 HVMELAESSIK----NIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHG-ST 128
SS+K N++ + R + + L
Sbjct: 1228 TTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEI 1278
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 27.5 bits (60), Expect = 2.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
M L G R+L++G G + + P + +E
Sbjct: 50 MHALAAAASSKGGRVLEVGFGMAIAASKVQ--EAPIDEHWIIE 90
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 27.6 bits (61), Expect = 2.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 45 KDKIKPGARILDIGSGSG---YLTACLAYMAGPEGRVYGV 81
+ +K R++D+G G G Y A ++G +G G
Sbjct: 69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 27.8 bits (61), Expect = 2.7
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ G +D+G+ G T L VY V++ +A+S L+D G+
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNG-PMAQS-----------LMDTGQ 253
Query: 108 VQFV 111
V ++
Sbjct: 254 VTWL 257
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ R+LD+G+G+G+ L + PE + V+
Sbjct: 78 WQGPLRVLDLGTGAGFPGLPLK-IVRPELELVLVD 111
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 27.5 bits (62), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 48 IKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVE 82
+ G R+++IG G G LT +A +A P ++ VE
Sbjct: 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1;
structural genomics, riken structural
genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex
aeolicus} PDB: 3axt_A*
Length = 392
Score = 27.5 bits (60), Expect = 2.9
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
LE L K+ ++ D S SG + Y + + E +N
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK 98
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.7 bits (62), Expect = 3.2
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC-LAYMAGPEGR 77
GAD S P +++ K K G R++ + + Y A LA G
Sbjct: 506 GADASLPDQL-TPEQVMDGKKKIGKRVVILNAD-TYFMAPSLAEKLATAGH 554
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 27.3 bits (61), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
KIK +L+IG G+G LT L +A +V ++
Sbjct: 39 KIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITID 71
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 27.0 bits (59), Expect = 3.8
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+ D +G G + LA + V E +A
Sbjct: 80 NHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACL 120
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 27.0 bits (59), Expect = 4.0
Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 19/138 (13%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ + + + PGAR+L G + L +G V G E E
Sbjct: 5 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWL---SGQGYHVVGAELSEAAVERYF 61
Query: 93 KNIDKGNSELLDQGRVQFVAY---FWLRHLLLTNP-----------HGSTRVIQSCWTKE 138
+ + A W + + + +
Sbjct: 62 TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 121
Query: 139 EYNSWLLDQLVPGGRMVM 156
L + ++
Sbjct: 122 YVQH-LEALMPQACSGLL 138
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 27.1 bits (61), Expect = 4.1
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 32 SSPHIHAQMLELLKDKIKPG 51
+ +H +L++ K ++
Sbjct: 244 GNKALHDFILQVAKKYMEVA 263
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
complex, toxin- system complex; 2.61A {Clostridium
botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A
3zus_A 3zur_A
Length = 1295
Score = 27.5 bits (60), Expect = 4.1
Identities = 13/89 (14%), Positives = 25/89 (28%)
Query: 57 IGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWL 116
+ S Y + + + + ESS + N+ + + F FW+
Sbjct: 887 LIDLSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWI 946
Query: 117 RHLLLTNPHGSTRVIQSCWTKEEYNSWLL 145
R N E + W +
Sbjct: 947 RIPKYFNSISLNNEYTIINCMENNSGWKV 975
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 26.8 bits (60), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ +L+IG G G LT LA A +VY +E
Sbjct: 47 NLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIE 79
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 26.9 bits (60), Expect = 4.8
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
I D+G+G+G+ + + + P V V+
Sbjct: 67 DFNQVNTICDVGAGAGFPSLPIK-ICFPHLHVTIVD 101
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 26.9 bits (59), Expect = 4.9
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 15/74 (20%)
Query: 74 PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQS 133
E R +E ++ I+KG L ++ V + L P +V+
Sbjct: 25 WEARAKALESLL---------IEKG---HLSSDAIERVIKHYEHEL---GPMNGAKVVAK 69
Query: 134 CWTKEEYNSWLLDQ 147
WT + LL+
Sbjct: 70 AWTDPAFKQRLLED 83
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 26.8 bits (60), Expect = 4.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 52 ARILDIGSGSGYLTACLAYMAGPE--GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109
++D+G GSG L + L A + G V ++ A + GR Q
Sbjct: 171 GHVVDVGGGSGGLLSALL-TAHEDLSGTVLDLQGPASAAHRRFLDTGLS-------GRAQ 222
Query: 110 FVA 112
V
Sbjct: 223 VVV 225
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 26.7 bits (60), Expect = 4.9
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+K + +IG+G G+LT LA ++ +V +E
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIE 58
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 26.6 bits (59), Expect = 4.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
D S + + + E + K I DIG G G L L+ A PE + G+E
Sbjct: 31 DWSKLYPYYKNAENGQMTKKV--TIADIGCGFGGLMIDLS-PAFPEDLILGME 80
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 26.9 bits (59), Expect = 5.0
Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 26/153 (16%)
Query: 26 GYGADISSPHIHAQMLELLK-----DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80
GYG ISS I++ L + + LD G+G G +T L V
Sbjct: 51 GYG-HISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLF--REVDM 107
Query: 81 V---EHVMELAESSIKNIDKGNSELLDQGRVQF----------VAYFWLRHLLLTNPHGS 127
V E + A++ + K G F + + HL
Sbjct: 108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL---TDQHL 164
Query: 128 TRVIQSC--WTKEEYNSWLLDQLVPGGRMVMPV 158
++ C + + D + G ++ V
Sbjct: 165 AEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 197
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 27.0 bits (60), Expect = 5.3
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 53 RILDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
+LD+G G+G + A +A + P G + + E A ++ RV
Sbjct: 185 HVLDVGGGNGGMLAAIA-LRAPHLRGTLVELAGPAERARRRF-------ADAGLADRVTV 236
Query: 111 VA 112
Sbjct: 237 AE 238
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.5 bits (59), Expect = 5.5
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 6 RKNFFTRVVNEPYRIKSRQIGYGAD---ISSP-HIHAQMLELLKDKIKPGARILDIGSGS 61
+ +++ + I AD +S P ++ + +E LK + + D+ S
Sbjct: 43 ASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTSVK 102
Query: 62 GY-LTACLAY----------MAGPE 75
L L M G +
Sbjct: 103 REPLAKMLEVHTGAVLGLHPMFGAD 127
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKD-KIKPGARILDIGSGSG 62
E +R +G +I + ++ ++ LL++ ++ G I GSG
Sbjct: 264 EDAVDYNRYVG---NIYTGSLYLSLISLLENRDLQAGETIGLFSYGSG 308
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 26.6 bits (59), Expect = 5.7
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 17 PYRIKSRQIG-------YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
Y +K ++ + A ++ H + + + + DIG G G L L+
Sbjct: 6 RYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS 65
Query: 70 YMAGPEGRVYGVE 82
+ P+ + G+E
Sbjct: 66 PLF-PDTLILGLE 77
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding,
oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A
3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A
2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A
2zcf_A 1ahj_A 2cz0_A*
Length = 207
Score = 26.5 bits (58), Expect = 5.9
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 95 IDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSCWTKEEYNSWLLD 146
KG L+ G V+ + +P ++ WT E+ LL
Sbjct: 31 DGKG---LVPDGYVEGWKKTFEEDF---SPRRGAELVARAWTDPEFRQLLLT 76
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 26.8 bits (58), Expect = 6.0
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 34 PHIHAQML-----ELLKDKIKPGARILDIGSGSG-YLTACLAYMAGP-EGRVYGVEHVME 86
++L +L + I D +GSG L A +++ +
Sbjct: 300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETL 359
Query: 87 LAESSIKNIDKGNSELL 103
E + +L+
Sbjct: 360 FLELLSIRLGLLFPQLV 376
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.5 bits (59), Expect = 6.1
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
PG+ ++D + G T+ LA + +G+++ +
Sbjct: 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFD 134
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 26.6 bits (59), Expect = 6.4
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 52 ARILDIGSGSGYLTACLAYMAGPE--GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109
A +DIG G G L A + A P G + V E A + + R +
Sbjct: 204 ATAVDIGGGRGSLMAAVL-DAFPGLRGTLLERPPVAEEARELL-------TGRGLADRCE 255
Query: 110 FVA 112
+
Sbjct: 256 ILP 258
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2,
oxidoreductase; 1.84A {Ralstonia eutropha} SCOP:
b.82.1.19
Length = 208
Score = 26.2 bits (57), Expect = 6.5
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108
P A + ++T A + G + L + + L
Sbjct: 5 SPTAGRASLAPLREFITGLSALLDEQPGEARILREGGALLARLV-----ARDDWLPDAFA 59
Query: 109 QFVAYFWLRHLLLTNPHGSTRVIQSCWT 136
Q ++ + LL + ++ W
Sbjct: 60 QPHPEYYQQMLLHCDSAERFSIVSFVWG 87
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 26.3 bits (58), Expect = 6.8
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 44 LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
+ K+ ++D+ +G G + ++Y ++ H +EL + +IK
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACKNAK----KIYAIDINPHAIELLKKNIK 237
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 26.4 bits (57), Expect = 7.1
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 23/156 (14%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
S + LE I PG+ + IG+ + +L A G V+ M +
Sbjct: 32 SDRENDIFLE----NIVPGSTVAVIGASTRFL-IEKALERGASVTVFDFSQRM---CDDL 83
Query: 93 KNIDKGNSELLDQGRVQFVAYFWLRHLLLTNPHGSTRVIQSC-----WTKEEYNSWL--L 145
+D + G + + +T EE +
Sbjct: 84 AEALADRCVTIDLLDITAEIP--------KELAGHFDFVLNDRLINRFTTEEARRACLGM 135
Query: 146 DQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVT 181
LV G + V F +L +I+ T+
Sbjct: 136 LSLVGSGTVRASVKLGFYDIDLKLIEYGEQSGTLAK 171
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 26.4 bits (59), Expect = 7.2
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 34 PHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ QMLE D K +L++ G+G + LA RV E ++
Sbjct: 196 AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQ 252
Query: 93 KNI 95
NI
Sbjct: 253 YNI 255
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 26.3 bits (59), Expect = 7.4
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
A+ LE L ++P R+LD+ G G T LA A V GVE V L E +N
Sbjct: 276 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQN 327
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 26.2 bits (58), Expect = 7.7
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
D+ P + Q +++++ + G + TA +++ P R +GV+H++
Sbjct: 86 RDVIRPSLTVQAVDVVRGHLAAGDLCALV-------TATNSFVTAPIARAFGVQHLI 135
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 26.3 bits (59), Expect = 7.8
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ I +IGSG G+ T L V +E
Sbjct: 27 RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIE 59
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 26.1 bits (58), Expect = 7.8
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 32 SSPHIHAQMLELLK 45
++ +H ++LEL+K
Sbjct: 239 ANEKLHPKLLELIK 252
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase;
2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A*
2rba_A* 3ufj_A* 3uo7_A*
Length = 230
Score = 26.2 bits (57), Expect = 7.9
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACL-AYMAGPEGRVYGVEH 83
+ + L D + I+ IG G + A + GP +
Sbjct: 11 LTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLF 55
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 26.0 bits (58), Expect = 8.1
Identities = 3/18 (16%), Positives = 13/18 (72%)
Query: 32 SSPHIHAQMLELLKDKIK 49
S+ IH ++++++ + ++
Sbjct: 234 SNGLIHDEVVKVVNEVVE 251
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 26.2 bits (57), Expect = 8.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
K ++D +G G LA + RV +E +A + +G ++
Sbjct: 85 KGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYAD 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,297,087
Number of extensions: 197118
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 231
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)