BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10574
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WKY|A Chain A, Crystal Structure Of Alkaline Mannanase From Bacillus Sp.
           Strain Jamb- 602: Catalytic Domain And Its Carbohydrate
           Binding Module
          Length = 464

 Score = 30.4 bits (67), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 141 RAVRYLMKFRDVTLGRSTADHSVDIDL------SLEGPAWKVSRRQACIRMRNNG 189
           RAV Y ++ R   +G+   + +V I++      S +G AW    +QA  R+RN G
Sbjct: 106 RAVDYWIEMRSALIGK---EDTVIINIANEWFGSWDGAAWADGYKQAIPRLRNAG 157


>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
          Length = 613

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 195 NEGKRPIYVDGRPII-ASNKYKLNHNSIIERFDRGNW 230
           N   RPIYVDG+ ++ A NK      S  E+   G W
Sbjct: 153 NRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEW 189


>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
          Length = 484

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 51  AVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIK 84
           ++QG++NL P+ V  +Q+K  +S+   +L+G+IK
Sbjct: 214 SLQGIKNLDPKEVAQVQSKD-YSHLTNDLVGAIK 246


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,530,941
Number of Sequences: 62578
Number of extensions: 233009
Number of successful extensions: 429
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)