Query psy10574
Match_columns 232
No_of_seqs 160 out of 311
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:55:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pie_A E3 ubiquitin-protein li 99.6 2E-15 6.8E-20 121.7 10.2 81 143-226 20-102 (138)
2 4h87_A Kanadaptin; FHA domain 99.6 2.9E-15 1E-19 120.2 11.0 87 134-227 22-122 (130)
3 3va4_A Mediator of DNA damage 99.6 1.4E-15 4.9E-20 122.4 8.6 90 133-229 25-121 (132)
4 1g6g_A Protein kinase RAD53; b 99.6 2.7E-15 9.1E-20 119.2 9.5 72 151-228 37-108 (127)
5 3gqs_A Adenylate cyclase-like 99.6 3E-15 1E-19 115.2 9.4 88 134-229 6-97 (106)
6 1mzk_A Kinase associated prote 99.6 3.5E-15 1.2E-19 120.4 9.0 89 134-229 9-114 (139)
7 3po8_A RV0020C protein, putati 99.6 4.1E-15 1.4E-19 113.2 8.7 84 135-229 8-92 (100)
8 1gxc_A CHK2, CDS1, serine/thre 99.6 5E-15 1.7E-19 120.8 9.3 86 139-227 37-131 (149)
9 2jpe_A Nuclear inhibitor of pr 99.6 3.8E-15 1.3E-19 120.2 7.5 90 134-229 36-130 (140)
10 1lgp_A Cell cycle checkpoint p 99.6 5.5E-15 1.9E-19 115.2 7.8 79 143-227 17-96 (116)
11 2csw_A Ubiquitin ligase protei 99.6 7.7E-15 2.6E-19 119.2 8.8 80 144-226 29-110 (145)
12 1g3g_A Protien kinase SPK1; FH 99.6 6.3E-15 2.1E-19 122.3 8.2 88 134-227 35-135 (164)
13 1uht_A Expressed protein; FHA 99.6 5.3E-15 1.8E-19 115.7 6.8 88 134-228 14-105 (118)
14 2xt9_B Putative signal transdu 99.5 2.6E-14 8.9E-19 111.6 10.2 85 134-229 13-100 (115)
15 1r21_A Antigen KI-67; beta san 99.5 1.8E-14 6.1E-19 114.3 9.0 86 134-229 14-103 (128)
16 2kb3_A Oxoglutarate dehydrogen 99.5 2.5E-14 8.5E-19 116.6 9.9 85 134-229 48-135 (143)
17 3hx1_A SLR1951 protein; P74513 99.5 6.5E-14 2.2E-18 112.3 11.0 88 131-228 9-108 (131)
18 2jqj_A DNA damage response pro 99.5 4.3E-14 1.5E-18 115.4 9.5 79 141-227 28-114 (151)
19 3els_A PRE-mRNA leakage protei 99.5 5.5E-14 1.9E-18 116.4 9.1 92 133-228 32-146 (158)
20 2kfu_A RV1827 PThr 22; FHA dom 99.5 6.6E-14 2.2E-18 116.5 8.7 85 134-229 57-144 (162)
21 3fm8_A Kinesin-like protein KI 99.5 9.3E-14 3.2E-18 111.0 9.0 88 133-230 27-119 (124)
22 3elv_A PRE-mRNA leakage protei 99.5 2.1E-13 7.1E-18 117.7 10.0 91 134-228 80-193 (205)
23 3oun_A Putative uncharacterize 99.5 1.3E-13 4.5E-18 114.4 8.2 82 137-229 72-154 (157)
24 1wln_A Afadin; beta sandwich, 99.5 2.7E-13 9.3E-18 106.6 9.4 85 134-227 13-106 (120)
25 1dmz_A Protein (protein kinase 99.4 1.7E-13 6E-18 113.0 7.6 79 143-228 18-117 (158)
26 4ejq_A Kinesin-like protein KI 99.4 4.1E-13 1.4E-17 110.4 9.4 82 142-229 53-138 (154)
27 2ff4_A Probable regulatory pro 99.4 1.1E-12 3.8E-17 120.7 9.5 80 140-229 296-376 (388)
28 1qu5_A Protein kinase SPK1; FH 99.4 3.1E-13 1.1E-17 114.2 5.2 79 143-228 42-141 (182)
29 3kt9_A Aprataxin; FHA domain, 99.2 1.8E-11 6.3E-16 94.9 7.8 74 144-226 16-91 (102)
30 3huf_A DNA repair and telomere 99.1 2E-10 6.7E-15 104.8 8.8 82 143-229 14-107 (325)
31 4egx_A Kinesin-like protein KI 99.1 4.1E-10 1.4E-14 95.3 9.2 83 142-230 83-169 (184)
32 2brf_A Bifunctional polynucleo 99.1 1.6E-10 5.3E-15 90.9 5.8 76 140-224 17-95 (110)
33 3i6u_A CDS1, serine/threonine- 98.9 1.1E-09 3.7E-14 100.4 7.0 96 134-229 12-113 (419)
34 1yj5_C 5' polynucleotide kinas 98.9 2E-09 6.9E-14 88.0 6.9 83 133-224 7-95 (143)
35 1ujx_A Polynucleotide kinase 3 98.9 6.8E-10 2.3E-14 88.4 3.8 76 140-224 24-102 (119)
36 3uv0_A Mutator 2, isoform B; F 98.7 2.9E-08 9.8E-13 76.9 6.2 78 139-228 10-94 (102)
37 4a0e_A YSCD, type III secretio 98.2 2.4E-06 8.2E-11 68.2 7.3 85 135-229 7-93 (123)
38 1wv3_A Similar to DNA segregat 97.8 1.2E-05 4E-10 70.1 4.5 84 133-229 72-164 (238)
39 3osg_A MYB21; transcription-DN 91.4 0.28 9.7E-06 38.0 5.2 57 3-83 19-76 (126)
40 2k9n_A MYB24; R2R3 domain, DNA 89.4 0.42 1.4E-05 35.9 4.5 57 3-83 9-67 (107)
41 1gv2_A C-MYB, MYB proto-oncoge 89.3 0.45 1.5E-05 35.4 4.5 57 3-83 12-70 (105)
42 1h8a_C AMV V-MYB, MYB transfor 88.2 0.6 2.1E-05 36.0 4.7 56 4-83 36-93 (128)
43 2dim_A Cell division cycle 5-l 87.1 0.35 1.2E-05 33.7 2.5 50 4-77 18-69 (70)
44 3zqc_A MYB3; transcription-DNA 84.7 1 3.4E-05 35.0 4.3 57 3-83 10-68 (131)
45 1h89_C C-MYB, MYB proto-oncoge 81.0 2.1 7.1E-05 34.1 4.9 56 4-83 67-124 (159)
46 2cu3_A Unknown function protei 78.7 1.5 5E-05 29.8 2.9 25 200-224 31-57 (64)
47 1ygs_A SMAD4; tumor suppressor 76.3 2.5 8.4E-05 36.8 4.2 84 144-227 20-122 (234)
48 2kl0_A Putative thiamin biosyn 74.5 1 3.4E-05 32.0 1.1 26 199-224 31-58 (73)
49 2k5p_A THis protein, thiamine- 73.7 1.5 5E-05 31.5 1.8 26 199-224 35-62 (78)
50 1ryj_A Unknown; beta/alpha pro 72.9 3.2 0.00011 28.7 3.4 23 200-224 41-63 (70)
51 3hvz_A Uncharacterized protein 71.6 3 0.0001 30.0 3.1 26 199-226 42-67 (78)
52 1dd1_A SMAD4; B-sheet sandwich 71.3 3.7 0.00013 36.4 4.2 47 181-227 103-156 (268)
53 1h89_C C-MYB, MYB proto-oncoge 71.0 1.6 5.4E-05 34.8 1.6 55 4-82 15-71 (159)
54 2q5w_D Molybdopterin convertin 70.8 3.4 0.00012 28.5 3.2 23 200-224 48-70 (77)
55 1tyg_B YJBS; alpha beta barrel 70.8 3.3 0.00011 30.4 3.2 26 199-224 53-80 (87)
56 2l52_A Methanosarcina acetivor 70.5 2 6.7E-05 31.8 1.9 28 197-224 63-92 (99)
57 2hj1_A Hypothetical protein; s 69.8 1.8 6.1E-05 32.6 1.6 26 198-225 58-83 (97)
58 1f0z_A THis protein; ubiquitin 68.0 1.9 6.5E-05 29.4 1.3 25 200-224 33-59 (66)
59 2cqr_A RSGI RUH-043, DNAJ homo 67.8 5.7 0.0002 28.2 3.9 40 3-45 26-70 (73)
60 1rws_A Hypothetical protein PF 67.7 2.4 8.3E-05 29.8 1.9 24 199-224 47-70 (77)
61 3mml_A Allophanate hydrolase s 64.5 7.4 0.00025 35.2 4.8 47 181-228 63-110 (318)
62 3rpf_C Molybdopterin convertin 64.3 4.9 0.00017 27.8 2.9 26 198-224 42-67 (74)
63 2g1e_A Hypothetical protein TA 64.3 3.8 0.00013 29.0 2.4 25 200-224 57-83 (90)
64 2bps_A YUKD protein; ubiquitin 62.9 4.7 0.00016 29.4 2.6 31 191-224 50-80 (81)
65 1khx_A SMAD2; TGF-beta signali 62.7 7 0.00024 33.7 4.1 83 144-227 49-147 (227)
66 2k6p_A Uncharacterized protein 59.1 8 0.00027 27.7 3.3 25 200-226 27-51 (92)
67 3po0_A Small archaeal modifier 57.8 8 0.00027 27.4 3.1 24 199-224 59-82 (89)
68 1p9k_A ORF, hypothetical prote 57.5 3.6 0.00012 28.9 1.2 27 200-228 47-74 (79)
69 1vjk_A Molybdopterin convertin 55.8 7.2 0.00025 28.4 2.6 23 200-224 69-91 (98)
70 1fm0_D Molybdopterin convertin 55.4 10 0.00034 26.2 3.2 24 199-224 51-74 (81)
71 3dwg_C 9.5 kDa culture filtrat 55.2 8 0.00028 27.7 2.8 25 200-224 60-86 (93)
72 1ity_A TRF1; helix-turn-helix, 54.3 16 0.00054 25.0 4.1 40 3-43 18-59 (69)
73 2kmm_A Guanosine-3',5'-BIS(dip 53.5 10 0.00034 25.6 2.9 25 200-226 38-62 (73)
74 2l32_A Small archaeal modifier 53.5 6.4 0.00022 27.8 1.9 22 200-224 38-59 (74)
75 3u7z_A Putative metal binding 53.2 11 0.00036 28.6 3.3 25 201-225 71-96 (101)
76 3oep_A Putative uncharacterize 50.5 13 0.00044 35.5 4.1 46 181-228 281-327 (494)
77 3gmj_D Protein mothers against 49.4 14 0.00048 32.2 3.8 84 143-227 65-165 (245)
78 2k9x_A Tburm1, uncharacterized 48.2 8.3 0.00028 29.4 2.0 24 201-224 70-95 (110)
79 1w0t_A Telomeric repeat bindin 48.2 22 0.00074 22.9 3.8 39 3-42 10-50 (53)
80 1dm9_A Hypothetical 15.5 KD pr 46.9 14 0.00049 28.7 3.2 24 200-225 35-58 (133)
81 1wgk_A Riken cDNA 2900073H19 p 43.0 9.5 0.00033 29.1 1.6 24 201-224 76-101 (114)
82 1guu_A C-MYB, MYB proto-oncoge 41.6 35 0.0012 21.7 4.0 37 3-42 11-49 (52)
83 1v8c_A MOAD related protein; r 40.7 15 0.00053 29.7 2.6 26 199-224 53-80 (168)
84 3sjm_A Telomeric repeat-bindin 40.7 35 0.0012 23.2 4.1 39 3-42 19-59 (64)
85 2qjl_A URM1, ubiquitin-related 40.3 19 0.00064 26.2 2.8 24 201-224 67-92 (99)
86 1gvd_A MYB proto-oncogene prot 39.8 12 0.00042 24.0 1.5 15 69-83 3-17 (52)
87 2llk_A Cyclin-D-binding MYB-li 36.1 12 0.00041 26.5 1.1 15 69-83 23-37 (73)
88 1c05_A Ribosomal protein S4 de 34.6 29 0.00099 27.8 3.3 39 175-226 63-102 (159)
89 2cqj_A BRMS2, U3 small nucleol 34.5 9.7 0.00033 26.6 0.3 40 177-227 22-62 (71)
90 3va7_A KLLA0E08119P; carboxyla 34.2 31 0.001 36.4 4.2 45 181-227 537-582 (1236)
91 1fex_A TRF2-interacting telome 33.7 17 0.0006 24.5 1.6 14 69-82 2-15 (59)
92 2din_A Cell division cycle 5-l 32.8 16 0.00055 24.6 1.3 16 68-83 8-23 (66)
93 2d9a_A B-MYB, MYB-related prot 32.8 49 0.0017 21.6 3.7 38 3-43 16-55 (60)
94 2cjj_A Radialis; plant develop 30.4 34 0.0012 25.3 2.8 39 3-44 16-59 (93)
95 1x41_A Transcriptional adaptor 29.0 64 0.0022 21.2 3.8 40 3-45 16-57 (60)
96 2vqe_D 30S ribosomal protein S 28.5 38 0.0013 28.4 3.2 40 175-227 111-151 (209)
97 2aje_A Telomere repeat-binding 26.9 1E+02 0.0034 23.2 5.0 58 3-66 21-86 (105)
98 2cu7_A KIAA1915 protein; nucle 26.5 26 0.00088 24.1 1.5 15 68-82 8-22 (72)
99 2roh_A RTBP1, telomere binding 25.3 1E+02 0.0035 23.9 4.9 40 3-43 39-82 (122)
100 3h43_A Proteasome-activating n 25.3 71 0.0024 23.0 3.7 43 179-225 31-75 (85)
101 1a92_A Delta antigen; leucine 25.0 43 0.0015 22.3 2.2 18 97-114 22-39 (50)
102 2elk_A SPCC24B10.08C protein; 24.7 31 0.0011 22.8 1.6 14 69-82 9-22 (58)
103 2ckx_A NGTRF1, telomere bindin 23.2 1.5E+02 0.0051 21.2 5.1 58 3-65 8-72 (83)
104 2yum_A ZZZ3 protein, zinc fing 22.8 35 0.0012 23.5 1.6 14 69-82 8-21 (75)
105 3bbn_D Ribosomal protein S4; s 22.7 58 0.002 27.3 3.2 39 176-227 102-141 (201)
106 2eki_A DRG 1, developmentally- 22.5 25 0.00086 26.2 0.8 29 194-225 57-85 (93)
107 3a4r_A Nfatc2-interacting prot 22.1 67 0.0023 22.3 3.0 26 200-225 50-78 (79)
108 1ksk_A Ribosomal small subunit 21.2 61 0.0021 26.8 3.0 39 175-226 15-54 (234)
109 1wm3_A Ubiquitin-like protein 20.9 62 0.0021 21.9 2.5 25 200-224 43-70 (72)
110 3dh3_A Ribosomal large subunit 20.5 63 0.0021 28.3 3.1 41 174-227 17-57 (290)
No 1
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.61 E-value=2e-15 Score=121.69 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred eEEEee-cCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCceeCCCCC
Q psy10574 143 VRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNHNS 220 (232)
Q Consensus 143 ~~y~m~-~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~L~~gd 220 (232)
-.|.+. +..++|||+. ..||.|........|||+||.|.++.++.|+|+|+| +|||||||+++.++.+++|++||
T Consensus 20 ~~~~l~~~~~~~IGR~~---~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~GD 96 (138)
T 2pie_A 20 GWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGD 96 (138)
T ss_dssp CBEEECTTCCEEEESSS---SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTC
T ss_pred CEEEecCCCeEEECCCC---CCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcCCCCcEECCCCC
Confidence 357776 7789999987 357777532223469999999999667899999997 59999999999999999999999
Q ss_pred eEEECC
Q psy10574 221 IIERFD 226 (232)
Q Consensus 221 iIeig~ 226 (232)
+|.||+
T Consensus 97 ~I~lG~ 102 (138)
T 2pie_A 97 YIQLGV 102 (138)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 999998
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=120.22 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=70.1
Q ss_pred eEEEEEccc--eEEEeecC-eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEc----------cCCcEEEEEcCc-C
Q psy10574 134 TYAVLRGRA--VRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR----------NNGDFFIANEGK-R 199 (232)
Q Consensus 134 ~lAvL~G~~--~~y~m~~~-ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~----------~d~~f~L~nlGk-n 199 (232)
.|.+++|.. -++.+..+ .++|||.. ..||-|. ...|||+||.|.++ .++.|||.|+|+ |
T Consensus 22 ~L~v~k~g~~~~~~~L~~~~~~~IGR~~---~~di~l~----~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StN 94 (130)
T 4h87_A 22 SLETLKGGTILGTRSLKGTSYCLFGRLS---GCDVCLE----HPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTH 94 (130)
T ss_dssp EEEEEETTEEEEEEECTTCSEEEEESST---TSSEECC----CTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSS
T ss_pred EEEEEECCeeeeeEEeCCCceEEEcCCc---CCCEEeC----CCCcchhcEEEEEecccCccceeccCCcceEeeCCCCC
Confidence 688888774 35777654 48999985 3466563 46799999999764 245799999985 9
Q ss_pred ceEECCEEecCCCceeCCCCCeEEECCC
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIeig~~ 227 (232)
||||||++|.++.++.|++||+|.||+.
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~G~s 122 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRFGGS 122 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEETTC
T ss_pred ceEECCEECCCCceeECCCCCEEEECCc
Confidence 9999999999999999999999999974
No 3
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.61 E-value=1.4e-15 Score=122.41 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=76.2
Q ss_pred ceEEEEEccc---eEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc-CCcEEEEEcCc-CceEECCEE
Q psy10574 133 QTYAVLRGRA---VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEGK-RPIYVDGRP 207 (232)
Q Consensus 133 ~~lAvL~G~~---~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~-d~~f~L~nlGk-ngi~VNG~~ 207 (232)
..|.++.|.. ..|.+...+++|||... .||-|. +..|||+||.|.++. ++.|+|+|+|+ |||||||++
T Consensus 25 g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~ 97 (132)
T 3va4_A 25 GQLRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVALP----FPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPP 97 (132)
T ss_dssp EEEEECCBTTBSCEEEEECSEEEEEESSTT---SSEECC----CTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTT
T ss_pred EEEEEEeCCCCCceEEEECCCCEEEccCCC---CCEEeC----CCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEE
Confidence 3677777754 88999999999999863 466663 469999999999984 57899999985 999999998
Q ss_pred --ecCCCceeCCCCCeEEECCCCc
Q psy10574 208 --IIASNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 208 --l~~g~~~~L~~gdiIeig~~~~ 229 (232)
+.++.++.|++||+|.||++.+
T Consensus 98 i~l~~~~~~~L~~GD~I~lG~~~l 121 (132)
T 3va4_A 98 RVLPPGVSHRLRDQELILFADFPC 121 (132)
T ss_dssp EEECTTCCEECCTTCEEEETTEEE
T ss_pred cccCCCCEEECCCCCEEEECCEEE
Confidence 6889999999999999998753
No 4
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.60 E-value=2.7e-15 Score=119.24 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=63.4
Q ss_pred eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 151 DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 151 ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
.++|||+.. .||-|. +...|||+||.|.++.+|.|+|+|+++|||||||+++.+|++++|.+||+|.||...
T Consensus 37 ~~~IGR~~~---~di~l~---~~~~vSr~Ha~i~~~~~g~~~l~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHLG---NISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp EEEEESSTT---SSEECC---SCTTSCSSCEEEEECTTSCEEEEECCSSCCEETTEECCTTCCEECCTTCEEEECTTS
T ss_pred CEEECCCCC---CCEEeC---CCCCCChhHeEEEECCCCcEEEEECCcCCeEECCEEcCCCCeEEcCCCCEEEECCCc
Confidence 899999974 577774 223699999999997678999999977999999999999999999999999999864
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.60 E-value=3e-15 Score=115.25 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=70.4
Q ss_pred eEEEEEcc--ceEEEeecC-eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCc-CceEECCEEec
Q psy10574 134 TYAVLRGR--AVRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 209 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~-ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGk-ngi~VNG~~l~ 209 (232)
.|.++.|. ..+|.+... .++|||.... .||-|. +..|||+||.|.++.++.|+|+|+|+ |||||||+++.
T Consensus 6 ~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~--~di~l~----d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~ 79 (106)
T 3gqs_A 6 LLKVLAGANIGAEFHLDSGKTYIVGSDPQV--ADIVLS----DMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIE 79 (106)
T ss_dssp EEEECC-CCTTCEEEECTTCEEEEESCTTT--CSEECC----CTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECS
T ss_pred EEEEEeCCCCcEEEEECCCCEEEEeECCCc--CCEEeC----CCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECC
Confidence 45566665 467888765 5899998642 366553 47899999999998778899999974 99999999998
Q ss_pred CCCceeCCCCCeEEECCCCc
Q psy10574 210 ASNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 210 ~g~~~~L~~gdiIeig~~~~ 229 (232)
+ ++.|++||+|+||++.+
T Consensus 80 ~--~~~L~~Gd~i~~G~~~~ 97 (106)
T 3gqs_A 80 H--QSTLSANQVVALGTTLF 97 (106)
T ss_dssp S--EEECCTTCCEEETTEEE
T ss_pred C--CeECCCCCEEEECCEEE
Confidence 6 67999999999998754
No 6
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.59 E-value=3.5e-15 Score=120.35 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=74.2
Q ss_pred eEEEEEcc--ceEEEeecC-----eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCC-cEEEEEcC-cCceEEC
Q psy10574 134 TYAVLRGR--AVRYLMKFR-----DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG-DFFIANEG-KRPIYVD 204 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~-----ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~-~f~L~nlG-kngi~VN 204 (232)
.|.++.|. ..+|.+... .++|||... -||-|. +..|||+||.|.++.++ .|+|+|+| +||||||
T Consensus 9 ~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vN 81 (139)
T 1mzk_A 9 FLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSP---SDLALK----DSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVN 81 (139)
T ss_dssp EEEECSSTTCSCEEEECTTCSTTCSEEEESSSS---CSEECC----CTTSSSEEEEEEEETTTTEEEEEETTCSSCCEET
T ss_pred EEEEEeCCCCCeEEEecCCCCccceEEeeCCCC---CCEEeC----CCCCChHHcEEEEECCCCEEEEEECCCCCCEEEC
Confidence 56666665 457888764 799999875 467664 56899999999999864 79999998 5999999
Q ss_pred CEEecC--------CCceeCCCCCeEEECCCCc
Q psy10574 205 GRPIIA--------SNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 205 G~~l~~--------g~~~~L~~gdiIeig~~~~ 229 (232)
|+++.+ |.+++|++||+|.||++.+
T Consensus 82 g~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~ 114 (139)
T 1mzk_A 82 SHSISHPDLGSRKWGNPVELASDDIITLGTTTK 114 (139)
T ss_dssp TEESSCCCTTTCCCCCCEECCTTEEEECSSSCE
T ss_pred CEECcCcccccccCCceEECCCCCEEEECCEEE
Confidence 999984 8899999999999998764
No 7
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.58 E-value=4.1e-15 Score=113.24 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=70.1
Q ss_pred EEEEEccceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCc
Q psy10574 135 YAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNK 213 (232)
Q Consensus 135 lAvL~G~~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~ 213 (232)
|.+..|....|.+...+++|||.. ..||-|. +..|||+||.|.++. +.|+|+|+| +||+||||+++. +
T Consensus 8 l~~~~g~g~~~~l~~~~~~IGR~~---~~di~l~----d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vng~~i~---~ 76 (100)
T 3po8_A 8 LQLDDGSGRTYQLREGSNIIGRGQ---DAQFRLP----DTGVSRRHLEIRWDG-QVALLADLNSTNGTTVNNAPVQ---E 76 (100)
T ss_dssp EEECSSSCCEEECCSEEEEEESST---TCSEECC----CTTSCSSCEEEEECS-SCEEEEECSCSSCCEETTEECS---E
T ss_pred EEEECCCCcEEEECCCCEEEeCCC---CCCEECC----CCCcChhhCEEEEeC-CEEEEEECCCCCCEEECCEECc---e
Confidence 334456678899999999999976 3466663 468999999999874 789999998 599999999996 6
Q ss_pred eeCCCCCeEEECCCCc
Q psy10574 214 YKLNHNSIIERFDRGN 229 (232)
Q Consensus 214 ~~L~~gdiIeig~~~~ 229 (232)
++|++||.|.||+..+
T Consensus 77 ~~L~~gd~i~iG~~~~ 92 (100)
T 3po8_A 77 WQLADGDVIRLGHSEI 92 (100)
T ss_dssp EECCTTCEEEETTEEE
T ss_pred EECCCCCEEEECCEEE
Confidence 8999999999998653
No 8
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.58 E-value=5e-15 Score=120.85 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=69.9
Q ss_pred EccceEEEeecCeeEeCCCCCCCCcceecCCC-----CCCcccchhceeEEEccCC----cEEEEEcCcCceEECCEEec
Q psy10574 139 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLE-----GPAWKVSRRQACIRMRNNG----DFFIANEGKRPIYVDGRPII 209 (232)
Q Consensus 139 ~G~~~~y~m~~~ei~IGR~s~~~~VDIDLs~e-----G~~~~ISR~HA~I~~~~d~----~f~L~nlGkngi~VNG~~l~ 209 (232)
.+..-.|.+.+..++|||.. ..||-|... .....|||+||.|.++.++ .|+|+|+++|||||||++|.
T Consensus 37 ~~~~~~i~L~~~~~~IGR~~---~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT~VNg~~i~ 113 (149)
T 1gxc_A 37 QDGFANLECVNDNYWFGRDK---SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVG 113 (149)
T ss_dssp STTCCCEEECSSEEEEESST---TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCEEETTEECC
T ss_pred CCCCceEEECCCCEEecCCC---CCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCeEECCEECC
Confidence 35445688999999999986 345555311 1122699999999998753 79999988899999999999
Q ss_pred CCCceeCCCCCeEEECCC
Q psy10574 210 ASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 210 ~g~~~~L~~gdiIeig~~ 227 (232)
+|.+++|++||+|.||..
T Consensus 114 ~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 114 KGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp TTCEEECCTTEEEEESST
T ss_pred CCCeEECCCCCEEEECCC
Confidence 999999999999999985
No 9
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.57 E-value=3.8e-15 Score=120.19 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=75.0
Q ss_pred eEEEEEccc--eEEEeecC-eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc-CCcEEEEEcC-cCceEECCEEe
Q psy10574 134 TYAVLRGRA--VRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEG-KRPIYVDGRPI 208 (232)
Q Consensus 134 ~lAvL~G~~--~~y~m~~~-ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~-d~~f~L~nlG-kngi~VNG~~l 208 (232)
.|.++.|.. ..|.+... .++|||+... .||-|. +..|||+||.|.++. ++.|+|+|+| +|||||||+++
T Consensus 36 ~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~--~di~l~----d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l 109 (140)
T 2jpe_A 36 HLDVVKGDKLIEKLIIDEKKYYLFGRNPDL--CDFTID----HQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRL 109 (140)
T ss_dssp BEEEESSSSEEEEECCSSCSBCCBSSCTTT--SSSCCC----CSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEE
T ss_pred EEEEEcCCCcceEEEeCCCCeEEecCCCcc--CCEEeC----CCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEEC
Confidence 577887764 57888875 4999998752 355453 478999999999986 4789999997 59999999999
Q ss_pred cCCCceeCCCCCeEEECCCCc
Q psy10574 209 IASNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 209 ~~g~~~~L~~gdiIeig~~~~ 229 (232)
.++.++.|++||+|.||+..+
T Consensus 110 ~~~~~~~L~~gd~i~~G~~~~ 130 (140)
T 2jpe_A 110 EPHKPQQIPIDSTVSFGASTR 130 (140)
T ss_dssp CSSSCCEECTTCCBBCSSCCC
T ss_pred CCCccEECCCCCEEEECCceE
Confidence 999999999999999998764
No 10
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.56 E-value=5.5e-15 Score=115.16 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=67.5
Q ss_pred eEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc-CCcEEEEEcCcCceEECCEEecCCCceeCCCCCe
Q psy10574 143 VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSI 221 (232)
Q Consensus 143 ~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~-d~~f~L~nlGkngi~VNG~~l~~g~~~~L~~gdi 221 (232)
..|.+.+..++|||+. ..||-|. +...|||+||.|.++. ++.|+|+|.++|||||||+++.+|.+++|++||+
T Consensus 17 ~~~~l~~~~~~iGR~~---~~di~l~---~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~l~~~~~~~L~~GD~ 90 (116)
T 1lgp_A 17 PHVLLRKREWTIGRRR---GCDLSFP---SNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDV 90 (116)
T ss_dssp CCEEECSSEEEEESST---TSSEECT---TCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSSCCCCCTTCE
T ss_pred cEEEECCCCEEECCCC---CCCEEeC---CCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEEcCCCCcEECCCCCE
Confidence 4688889999999997 3566553 2458999999999974 6889999933599999999999999999999999
Q ss_pred EEECCC
Q psy10574 222 IERFDR 227 (232)
Q Consensus 222 Ieig~~ 227 (232)
|.||+.
T Consensus 91 i~~G~~ 96 (116)
T 1lgp_A 91 IYLVYR 96 (116)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999985
No 11
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.56 E-value=7.7e-15 Score=119.24 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=65.9
Q ss_pred EEEe-ecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCc-CceEECCEEecCCCceeCCCCCe
Q psy10574 144 RYLM-KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSI 221 (232)
Q Consensus 144 ~y~m-~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGk-ngi~VNG~~l~~g~~~~L~~gdi 221 (232)
.|.+ .+..++|||.. ..||.|........|||+||.|.++.++.|+|+|+|+ |||||||+++.++++++|++||+
T Consensus 29 ~~~l~~~~~~~IGR~~---~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~~~~~~L~~GD~ 105 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDY 105 (145)
T ss_dssp BEECCTTCCEEEESST---TSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEECCSSCC
T ss_pred eEEeCCCCcEEECCCC---CCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEECCEECCCCccEECCCCCE
Confidence 3555 66789999987 3567774211123499999999997678899999974 99999999999999999999999
Q ss_pred EEECC
Q psy10574 222 IERFD 226 (232)
Q Consensus 222 Ieig~ 226 (232)
|.||+
T Consensus 106 I~iG~ 110 (145)
T 2csw_A 106 IQLGV 110 (145)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 99998
No 12
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.56 E-value=6.3e-15 Score=122.26 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=71.8
Q ss_pred eEEEEEcc--ceEEEeecC-----------eeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCc
Q psy10574 134 TYAVLRGR--AVRYLMKFR-----------DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRP 200 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~-----------ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkng 200 (232)
.|.++.|. ...|.+... .++|||+.. .||.|. +...|||+||.|.++.+|.|+|+|+++||
T Consensus 35 ~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~---~di~l~---d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 35 RVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPA---CDYHLG---NISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp EEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSS---SSEECC---CCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred EEEEecCCCCCeEEEeccccccccccccCCcEEECCCCC---CCEEeC---CcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 45555565 356666643 899999874 577774 23369999999999767899999997799
Q ss_pred eEECCEEecCCCceeCCCCCeEEECCC
Q psy10574 201 IYVDGRPIIASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 201 i~VNG~~l~~g~~~~L~~gdiIeig~~ 227 (232)
+||||+++.+|.++.|.+||+|.||..
T Consensus 109 T~vNg~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNGQKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETTEEECTTEEEECCTTCEEEESCS
T ss_pred eEECCEEcCCCCceEcCCCCEEEECCC
Confidence 999999999999999999999999986
No 13
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.55 E-value=5.3e-15 Score=115.74 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=71.3
Q ss_pred eEEEEEcc--ceEEEeec-CeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEec
Q psy10574 134 TYAVLRGR--AVRYLMKF-RDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPII 209 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~-~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~ 209 (232)
.|.++.|. ...|.+.. ..++|||..+. .||-|. +..|||+||.|.++. +.|+|+|+| +|||||||+++.
T Consensus 14 ~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~--~di~l~----d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGT~vng~~l~ 86 (118)
T 1uht_A 14 RLVFVKGPREGDALDYKPGSTIRVGRIVRG--NEIAIK----DAGISTKHLRIESDS-GNWVIQDLGSSNGTLLNSNALD 86 (118)
T ss_dssp EEEESSSTTTTCBCCBCTTCCEEEESSSTT--CSEECC----SSSSCTTCEEEEECS-SSEEEECCCCSSCCEESSSBCC
T ss_pred EEEEEeCCCCCcEEEECCCCEEEEcCCCCC--CCEEeC----CCCCchHHeEEEEEC-CEEEEEECCCCCCeEECCEECC
Confidence 44444454 35677775 67999998433 356553 588999999999875 689999998 599999999999
Q ss_pred CCCceeCCCCCeEEECCCC
Q psy10574 210 ASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 210 ~g~~~~L~~gdiIeig~~~ 228 (232)
++.++.|++||+|.||++.
T Consensus 87 ~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 87 PETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp TTCEEECCTTEEEEETTTE
T ss_pred CCCeEEcCCCCEEEECCeE
Confidence 9999999999999999875
No 14
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.54 E-value=2.6e-14 Score=111.57 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=71.9
Q ss_pred eEEEEEcc--ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecC
Q psy10574 134 TYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIA 210 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~ 210 (232)
.|.++.|. ...|.+....++|||... .||-|. +..|||+||.|.++ ++.|+|+++| +|||||||+++.
T Consensus 13 ~L~v~~g~~~g~~~~l~~~~~~IGR~~~---~di~l~----d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vng~~i~- 83 (115)
T 2xt9_B 13 LLVVKRGPNAGSRFLLDQPTTSAGRHPD---SDIFLD----DVTVSRRHAEFRLE-GGEFQVVDVGSLNGTYVNREPVD- 83 (115)
T ss_dssp EEEEEESTTTTCEEEECSSEEEEESSTT---SSEECC----STTSCSSCEEEEEE-TTEEEEEECSCSSCEEETTEECS-
T ss_pred EEEEEeCCCCCeEEEECCCCEEECCCCC---CCEEeC----CcccChhheEEEEE-CCEEEEEECCCCCCeEECCEEcc-
Confidence 66677765 578999999999999863 466664 47999999999998 5789999997 599999999997
Q ss_pred CCceeCCCCCeEEECCCCc
Q psy10574 211 SNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 211 g~~~~L~~gdiIeig~~~~ 229 (232)
++.|++||+|.||++.+
T Consensus 84 --~~~L~~gd~i~iG~~~l 100 (115)
T 2xt9_B 84 --SAVLANGDEVQIGKFRL 100 (115)
T ss_dssp --EEEECTTCEEEETTEEE
T ss_pred --eEECCCCCEEEECCEEE
Confidence 68999999999998643
No 15
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.54 E-value=1.8e-14 Score=114.33 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=71.8
Q ss_pred eEEEEEc---cceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEec
Q psy10574 134 TYAVLRG---RAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPII 209 (232)
Q Consensus 134 ~lAvL~G---~~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~ 209 (232)
.|.++.| ....|.+.+..++|||+.. .||-|. +..|||+||.|.++. +.|+|+|+| +|||||||+++.
T Consensus 14 ~L~v~~~~~~~g~~~~l~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vNg~~i~ 85 (128)
T 1r21_A 14 RLVTIKRSGVDGPHFPLSLSTCLFGRGIE---CDIRIQ----LPVVSKQHCKIEIHE-QEAILHNFSSTNPTQVNGSVID 85 (128)
T ss_dssp EEEEEEETTEEEEEEECCSSEEEEESSTT---SSEECC----CTTSCTTCEEEEECS-SCEEECCCCSSSCCEETTEECS
T ss_pred EEEEEeCCCCCceEEEECCCCEEECCCCC---CCEEEC----CCCCChhHEEEEEEC-CEEEEEECCCCCCEEECCEECC
Confidence 6666664 2567999999999999864 466664 469999999999974 789999998 599999999997
Q ss_pred CCCceeCCCCCeEEECCCCc
Q psy10574 210 ASNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 210 ~g~~~~L~~gdiIeig~~~~ 229 (232)
.++.|++||+|.||++.+
T Consensus 86 --~~~~L~~Gd~i~iG~~~~ 103 (128)
T 1r21_A 86 --EPVRLKHGDVITIIDRSF 103 (128)
T ss_dssp --SCEECCTTEEEECSSCEE
T ss_pred --CcEEcCCCCEEEECCEEE
Confidence 379999999999998754
No 16
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.54 E-value=2.5e-14 Score=116.60 Aligned_cols=85 Identities=28% Similarity=0.353 Sum_probs=71.4
Q ss_pred eEEEEEcc--ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecC
Q psy10574 134 TYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIA 210 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~ 210 (232)
.|.++.|. ..+|.+.+..++|||... .||-|. +..|||+||.|.++ ++.|+|+|+| +||+||||+++.
T Consensus 48 ~L~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VNg~~i~- 118 (143)
T 2kb3_A 48 LLVVKRGPNAGARFLLDQPTTTAGRHPE---SDIFLD----DVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVNREPRN- 118 (143)
T ss_dssp EEEEEESTTTTCEEEECSSEEEESSCTT---CSBCCC----CSSCCSSSEEEEEE-TTEEEEEESCCSSCCEETTEECS-
T ss_pred EEEEEeCCCCCeEEEeCCCCeeccCCCC---CCEEeC----CCCcChhhEEEEEE-CCEEEEEECCCcCCeEECCEEcc-
Confidence 66677765 578999999999999863 455553 57999999999996 5789999998 599999999997
Q ss_pred CCceeCCCCCeEEECCCCc
Q psy10574 211 SNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 211 g~~~~L~~gdiIeig~~~~ 229 (232)
++.|++||+|.||++.+
T Consensus 119 --~~~L~~GD~I~iG~~~l 135 (143)
T 2kb3_A 119 --AQVMQTGDEIQIGKFRL 135 (143)
T ss_dssp --EEECCTTEEEEETTEEE
T ss_pred --eEECCCCCEEEECCEEE
Confidence 68999999999998653
No 17
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.52 E-value=6.5e-14 Score=112.31 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCceEEEEEcc--ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc--CC--cEEEEEc-----C-c
Q psy10574 131 DKQTYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN--NG--DFFIANE-----G-K 198 (232)
Q Consensus 131 d~~~lAvL~G~--~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~--d~--~f~L~nl-----G-k 198 (232)
....+-++.+. ...|.+.+..++|||... .||-|. +..|||+||.|.++. +| .|+|.|+ | +
T Consensus 9 ~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~ 81 (131)
T 3hx1_A 9 LQEHILIILDDAGRREVLLTETFYTIGRSPR---ADIRIK----SQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSV 81 (131)
T ss_dssp CCEEEEEEEETTEEEEEEECSSEEEEESSTT---SSEECC----CSSSCTTCEEEEEC------CCEEEEESCTTSCCCS
T ss_pred CcceEEEEECCCCcEEEEECCCCEEECCCCC---CCEEEC----CCCcChhheEEEEEccCCCceEEEEEECCCCCCCCC
Confidence 34466666654 468999999999999874 566663 467999999999874 33 4999999 5 5
Q ss_pred CceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 199 RPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 199 ngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
|||||||+++.. +.|++||+|.||+..
T Consensus 82 NGT~vNg~~i~~---~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 82 NGLMINGKKVQE---HIIQTGDEIVMGPQV 108 (131)
T ss_dssp SCEEETTEEESE---EECCTTCEEECSTTC
T ss_pred CceEECCEEeEe---EECCCCCEEEECCEE
Confidence 999999999984 999999999999875
No 18
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.51 E-value=4.3e-14 Score=115.43 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=67.3
Q ss_pred cceEEEee-cCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEc-------cCCcEEEEEcCcCceEECCEEecCCC
Q psy10574 141 RAVRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-------NNGDFFIANEGKRPIYVDGRPIIASN 212 (232)
Q Consensus 141 ~~~~y~m~-~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~-------~d~~f~L~nlGkngi~VNG~~l~~g~ 212 (232)
....|.+. +..++|||.. ..||-|. +..|||+||.|.+. .++.|+|+|+++|||||||++|.++
T Consensus 28 ~g~~~~l~~~~~~~IGR~~---~~di~l~----d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~VNg~~i~~~- 99 (151)
T 2jqj_A 28 KEQKVEITNRNVTTIGRSR---SCDVILS----EPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKK- 99 (151)
T ss_dssp EEEEEEEECCSCEEEESST---TSSEECC----CTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEETTEECCSS-
T ss_pred CceEEEEcCCCeEEeCCCC---CCCEEEC----CCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEECCEEcCCC-
Confidence 35677887 4899999986 3577664 47899999999993 3578999999889999999999998
Q ss_pred ceeCCCCCeEEECCC
Q psy10574 213 KYKLNHNSIIERFDR 227 (232)
Q Consensus 213 ~~~L~~gdiIeig~~ 227 (232)
++.|.+||+|.||+.
T Consensus 100 ~~~L~~GD~I~lG~~ 114 (151)
T 2jqj_A 100 DYILKNGDRIVFGKS 114 (151)
T ss_dssp CEEECSSEEEEETTT
T ss_pred ceECCCCCEEEECCC
Confidence 999999999999983
No 19
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.5e-14 Score=116.41 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=73.0
Q ss_pred ceEEEEEccc------eEEEee-cCeeEeCCCCC------------CCCcceecCCCCCCcccchhceeEEEccCC---c
Q psy10574 133 QTYAVLRGRA------VRYLMK-FRDVTLGRSTA------------DHSVDIDLSLEGPAWKVSRRQACIRMRNNG---D 190 (232)
Q Consensus 133 ~~lAvL~G~~------~~y~m~-~~ei~IGR~s~------------~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~---~ 190 (232)
--|.+++|.. -+|.+. +..++|||.+. ....||-|. ...|||+||.|.++.++ .
T Consensus 32 ~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~----~~~VSr~HA~I~~~~~~~~~~ 107 (158)
T 3els_A 32 YELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVRGILK 107 (158)
T ss_dssp EEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCSSCEEEEEEEETTEEE
T ss_pred eEEEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcC----CCCCCcccEEEEEEccCCeeE
Confidence 3677887643 256665 45689999863 134676663 46999999999998754 3
Q ss_pred EEEEEcCc-CceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 191 FFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 191 f~L~nlGk-ngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
|+|.|+|+ |||||||+++.++..++|++||+|.||...
T Consensus 108 ~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 108 CYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp EEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCG
T ss_pred EEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCCC
Confidence 99999975 999999999999999999999999999643
No 20
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.49 E-value=6.6e-14 Score=116.53 Aligned_cols=85 Identities=27% Similarity=0.343 Sum_probs=72.0
Q ss_pred eEEEEEcc--ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecC
Q psy10574 134 TYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIA 210 (232)
Q Consensus 134 ~lAvL~G~--~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~ 210 (232)
.|.++.|. ...|.+.+..++|||... .||-|. +..|||+||.|.++ ++.|+|+|+| +||+||||+++.
T Consensus 57 ~L~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VNg~~i~- 127 (162)
T 2kfu_A 57 LLVVKRGPNAGSRFLLDQAITSAGRHPD---SDIFLD----DVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVNREPVD- 127 (162)
T ss_dssp EEEEEESTTCSCEEETTSSEEEEESCSS---SSEEST----TTSSSSCSEEEEEE-TTEEEEECCCCSSCEEETTBCCS-
T ss_pred EEEEEeCCCCCeEEEECCCCEEECCCCC---CCEEEC----CCCcChhhEEEEEE-CCEEEEEECCCCCCeEECCEEcc-
Confidence 66777775 478999999999999863 466664 47999999999997 5789999998 599999999997
Q ss_pred CCceeCCCCCeEEECCCCc
Q psy10574 211 SNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 211 g~~~~L~~gdiIeig~~~~ 229 (232)
++.|++||+|.||++.+
T Consensus 128 --~~~L~~GD~I~iG~~~l 144 (162)
T 2kfu_A 128 --SAVLANGDEVQIGKFRL 144 (162)
T ss_dssp --EEECCSSCEEEETTEEE
T ss_pred --eEECCCCCEEEECCEEE
Confidence 68999999999998643
No 21
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.48 E-value=9.3e-14 Score=111.04 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=72.5
Q ss_pred ceEEEEEcc-----ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCceEECCEE
Q psy10574 133 QTYAVLRGR-----AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRP 207 (232)
Q Consensus 133 ~~lAvL~G~-----~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~ 207 (232)
..|..|.+. ...|+++. .++|||.++ .||-|. ...|||+||.|....+|.|+|++++.|||||||++
T Consensus 27 PhLvnLn~Dp~~s~~l~y~L~~-~t~IGR~~~---~DI~L~----~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG~~ 98 (124)
T 3fm8_A 27 CFLVNLNADPALNELLVYYLKE-HTLIGSANS---QDIQLC----GMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSS 98 (124)
T ss_dssp CEEEETTCCTTSSCCCEEECCS-EEEEESSTT---CSEECC----STTCCSSCEEEEECTTSCEEEEECTTCCEEETTEE
T ss_pred cEEEEeCCCCccCceEEEECCC-CeEECCCCC---CCEEEC----CCCeecceEEEEECCCCeEEEEECCCCCEEECCEE
Confidence 356666554 36688865 699999863 688885 46899999999986678999999999999999999
Q ss_pred ecCCCceeCCCCCeEEECCCCcc
Q psy10574 208 IIASNKYKLNHNSIIERFDRGNW 230 (232)
Q Consensus 208 l~~g~~~~L~~gdiIeig~~~~~ 230 (232)
|. .+++|++||.|.||...++
T Consensus 99 V~--~~~~L~~GD~I~lG~~~~F 119 (124)
T 3fm8_A 99 VS--SPIQLHHGDRILWGNNHFF 119 (124)
T ss_dssp CC--SCEEECTTCEEEETTTEEE
T ss_pred cC--CcEECCCCCEEEECCCeEE
Confidence 96 4799999999999987654
No 22
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.46 E-value=2.1e-13 Score=117.67 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=73.2
Q ss_pred eEEEEEccc------eEEEe-ecCeeEeCCCCC------------CCCcceecCCCCCCcccchhceeEEEccCC---cE
Q psy10574 134 TYAVLRGRA------VRYLM-KFRDVTLGRSTA------------DHSVDIDLSLEGPAWKVSRRQACIRMRNNG---DF 191 (232)
Q Consensus 134 ~lAvL~G~~------~~y~m-~~~ei~IGR~s~------------~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~---~f 191 (232)
-|.|++|.. -+|.+ .+..++|||... ....||-|. ...|||+||.|.+..++ .|
T Consensus 80 ~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~----dp~VSR~HA~I~~~~~~~~~~~ 155 (205)
T 3elv_A 80 ELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVRGILKC 155 (205)
T ss_dssp EEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeC----CCCCCcccEEEEEecCCCceeE
Confidence 478887532 26777 557899999863 234677664 46899999999988654 39
Q ss_pred EEEEcCc-CceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 192 FIANEGK-RPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 192 ~L~nlGk-ngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
+|.|+|+ |||||||++|.++..+.|.+||+|.||.-.
T Consensus 156 ~l~DLgStNGTfVNG~rI~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 156 YVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp EEEECSCSSCCEETTEECCBTSCEECCTTCEEESSSSG
T ss_pred EEEeCCCCCCCeECCEECCCCceeECCCCCEEEECCCC
Confidence 9999985 999999999999999999999999999643
No 23
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.46 E-value=1.3e-13 Score=114.43 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=68.9
Q ss_pred EEEccceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCcee
Q psy10574 137 VLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYK 215 (232)
Q Consensus 137 vL~G~~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~ 215 (232)
+..|....|.+...+++|||.. ..||-|. +..|||+||+|.++. +.|+|+|+| +|||||||+++. +++
T Consensus 72 v~~g~g~~~~L~~~~~~IGR~~---~~dI~L~----d~~VSr~HA~I~~~~-~~~~l~DlgStNGT~VNG~~i~---~~~ 140 (157)
T 3oun_A 72 LDDGSGRTYQLREGSNIIGRGQ---DAQFRLP----DTGVSRRHLEIRWDG-QVALLADLNSTNGTTVNNAPVQ---EWQ 140 (157)
T ss_dssp ETTTTCCEEECCSEEEEEESST---TCSEECC----CTTSCTTCEEEEECS-SCEEEEECSCSSCCEETTEECS---EEE
T ss_pred EcCCCCeEEEECCCcEEEEeCC---CCCEEeC----CCCcChhHEEEEEEC-CEEEEEECCCCCCeEECCEECc---eEE
Confidence 3346678899999999999976 3466663 569999999999975 679999997 599999999996 689
Q ss_pred CCCCCeEEECCCCc
Q psy10574 216 LNHNSIIERFDRGN 229 (232)
Q Consensus 216 L~~gdiIeig~~~~ 229 (232)
|++||+|.||++.+
T Consensus 141 L~~GD~I~lG~~~l 154 (157)
T 3oun_A 141 LADGDVIRLGHSEI 154 (157)
T ss_dssp CCTTCEEEETTEEE
T ss_pred CCCCCEEEECCEEE
Confidence 99999999998653
No 24
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.45 E-value=2.7e-13 Score=106.60 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=69.8
Q ss_pred eEEEEEcc-------ceEEEeecCeeEeCCC-CCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEEC
Q psy10574 134 TYAVLRGR-------AVRYLMKFRDVTLGRS-TADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVD 204 (232)
Q Consensus 134 ~lAvL~G~-------~~~y~m~~~ei~IGR~-s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VN 204 (232)
.|..|.+. ...|.+...+++|||. +. ..||-|. ...|||+||.|.+. ++.|+|+++| +||+|||
T Consensus 13 ~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~--~~di~l~----~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~vN 85 (120)
T 1wln_A 13 YLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFD--DNSIQLF----GPGIQPHHCDLTNM-DGVVTVTPRSMDAETYVD 85 (120)
T ss_dssp EEEEECSSSCCCSSCCCEEECCSEEEECSSSCCS--TTCCCCC----CTTCCSSCEEEEES-SSCEEEEESCSSSCEEET
T ss_pred EEEEeCCChhhccCccEEEEECCCCEEECCCCCC--CCcEEEC----CCCCchhheEEEEc-CCEEEEEECCCCCCEEEC
Confidence 67777754 4679999999999984 32 3466553 47899999999987 5789999998 5999999
Q ss_pred CEEecCCCceeCCCCCeEEECCC
Q psy10574 205 GRPIIASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 205 G~~l~~g~~~~L~~gdiIeig~~ 227 (232)
|+++. .+++|++||+|.||..
T Consensus 86 g~~i~--~~~~L~~GD~I~iG~~ 106 (120)
T 1wln_A 86 GQRIS--ETTMLQSGMRLQFGTS 106 (120)
T ss_dssp SCBCS--SCEEECTTCEEEETTT
T ss_pred CEEcC--CCEECCCCCEEEECCc
Confidence 99997 5689999999999984
No 25
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.44 E-value=1.7e-13 Score=112.99 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=65.6
Q ss_pred eEEEeecCe--eEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc----C----------CcEEEEEcCcCceEECCE
Q psy10574 143 VRYLMKFRD--VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN----N----------GDFFIANEGKRPIYVDGR 206 (232)
Q Consensus 143 ~~y~m~~~e--i~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~----d----------~~f~L~nlGkngi~VNG~ 206 (232)
..|++.... ++|||+. ..||-|. ...|||+||.|.++. . +.|+|+|+++|||||||+
T Consensus 18 ~~i~L~~~~~~~~IGR~~---~~di~l~----d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ 90 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE---DCNCKIE----DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 90 (158)
T ss_dssp CCEEETTSCSCEEEESST---TSSEECC----CTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTE
T ss_pred eEEEEcCCCceEEECCCC---CCCEEeC----CCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCE
Confidence 456776655 9999986 3466663 469999999999875 1 579999998899999999
Q ss_pred EecCCCceeCCCCCeEEE-----CCCC
Q psy10574 207 PIIASNKYKLNHNSIIER-----FDRG 228 (232)
Q Consensus 207 ~l~~g~~~~L~~gdiIei-----g~~~ 228 (232)
+|.+|.+++|.+||+|.| |+..
T Consensus 91 ri~~~~~~~L~~GD~I~l~~d~~G~~~ 117 (158)
T 1dmz_A 91 RMIQGTKFLLQDGDEIKIIWDKNNKFV 117 (158)
T ss_dssp ECCSSEEEECCSSCCEESCCCTTTTCC
T ss_pred EcCCCceEEcCCCCEEEEeecCCCCEE
Confidence 999999999999999999 7654
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.43 E-value=4.1e-13 Score=110.43 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCC---cEEEEEcC-cCceEECCEEecCCCceeCC
Q psy10574 142 AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG---DFFIANEG-KRPIYVDGRPIIASNKYKLN 217 (232)
Q Consensus 142 ~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~---~f~L~nlG-kngi~VNG~~l~~g~~~~L~ 217 (232)
..-|+++...++|||.......||=|. ...|||+||.|.++.++ .+++.+.+ .|||||||++|. .++.|+
T Consensus 53 ~lvy~L~~g~t~IGR~~~~~~~DI~L~----~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~--~~~~L~ 126 (154)
T 4ejq_A 53 CLLYYIKDGITRVGREDGERRQDIVLS----GHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT--EPSILR 126 (154)
T ss_dssp EEEEECCSEEEEEECSSCSSCCSEECC----CTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECC--SCEECC
T ss_pred eEEEEeCCCCEEEcCCCCCCCCCEEEC----CCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcC--CceECC
Confidence 467999999999999887777899885 57899999999998764 37777776 599999999994 478999
Q ss_pred CCCeEEECCCCc
Q psy10574 218 HNSIIERFDRGN 229 (232)
Q Consensus 218 ~gdiIeig~~~~ 229 (232)
+||.|.||+...
T Consensus 127 ~GD~I~~G~~~~ 138 (154)
T 4ejq_A 127 SGNRIIMGKSHV 138 (154)
T ss_dssp TTCEEEETTTEE
T ss_pred CCCEEEECCcEE
Confidence 999999998653
No 27
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.37 E-value=1.1e-12 Score=120.70 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=68.3
Q ss_pred ccceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcC-cCceEECCEEecCCCceeCCC
Q psy10574 140 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNH 218 (232)
Q Consensus 140 G~~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~L~~ 218 (232)
.....|.+.+..++|||++. .||-|. +..|||+||.|.++. +.|+|+|+| +|||||||+++. .+++|++
T Consensus 296 ~~g~~~~l~~~~~~iGR~~~---~di~l~----~~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vng~~i~--~~~~L~~ 365 (388)
T 2ff4_A 296 ASGRGYPLQAAATRIGRLHD---NDIVLD----SANVSRHHAVIVDTG-TNYVINDLRSSNGVHVQHERIR--SAVTLND 365 (388)
T ss_dssp TTCCEEECCSSEEEEESSTT---SSEECC----CTTSCTTCEEEEECS-SCEEEEECSCSSCCEETTEECS--SEEEECT
T ss_pred CCCcEEEECCCCEEEecCCC---CeEEEC----CCccChhHeEEEEEC-CEEEEEECCCCCCeEECCEECC--CceECCC
Confidence 34678999999999999874 466664 588999999999974 789999998 599999999994 5799999
Q ss_pred CCeEEECCCCc
Q psy10574 219 NSIIERFDRGN 229 (232)
Q Consensus 219 gdiIeig~~~~ 229 (232)
||+|.||++.+
T Consensus 366 gd~i~~G~~~~ 376 (388)
T 2ff4_A 366 GDHIRICDHEF 376 (388)
T ss_dssp TCEEEETTEEE
T ss_pred CCEEEECCEEE
Confidence 99999998754
No 28
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.37 E-value=3.1e-13 Score=114.23 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=65.3
Q ss_pred eEEEeecCe--eEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC--------------CcEEEEEcCcCceEECCE
Q psy10574 143 VRYLMKFRD--VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN--------------GDFFIANEGKRPIYVDGR 206 (232)
Q Consensus 143 ~~y~m~~~e--i~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d--------------~~f~L~nlGkngi~VNG~ 206 (232)
..|++.... ++|||+.. .||-|. +..|||+||.|.++.. +.|+|.|+++|||||||+
T Consensus 42 ~~i~L~~~~~~~~IGR~~~---~di~l~----d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~ 114 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED---CNCKIE----DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 114 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT---SSSCCC----CTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETTE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEEC----CCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECCE
Confidence 457777665 99999862 345443 4599999999998751 679999998899999999
Q ss_pred EecCCCceeCCCCCeEEE-----CCCC
Q psy10574 207 PIIASNKYKLNHNSIIER-----FDRG 228 (232)
Q Consensus 207 ~l~~g~~~~L~~gdiIei-----g~~~ 228 (232)
+|.+|.+++|.+||+|.| |+..
T Consensus 115 ri~~~~~~~L~~GD~I~l~~d~~G~~~ 141 (182)
T 1qu5_A 115 RMIQGTKFLLQDGDEIKIIWDKNNKFV 141 (182)
T ss_dssp ECCSSEEEECCTTBCCEEEEEGGGTEE
T ss_pred EcCCCcceEcCCCCEEEEEEcCCCCEE
Confidence 999999999999999999 7653
No 29
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.23 E-value=1.8e-11 Score=94.95 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=61.3
Q ss_pred EEEe-ecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC-CcEEEEEcCcCceEECCEEecCCCceeCCCCCe
Q psy10574 144 RYLM-KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYKLNHNSI 221 (232)
Q Consensus 144 ~y~m-~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d-~~f~L~nlGkngi~VNG~~l~~g~~~~L~~gdi 221 (232)
.+.+ .+..++|||+... .++ ++++||+|+.|+.+.+ |.+.|+++|.||++|||+++.+|..+.|++||+
T Consensus 16 ~I~L~~g~~v~iGR~p~t-----~I~----DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~~GD~ 86 (102)
T 3kt9_A 16 RIRLPHLEAVVIGRGPET-----KIT----DKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQV 86 (102)
T ss_dssp EEECCBTCEEEECSSTTT-----CCC----CTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTCC
T ss_pred cEEcCCCCcEEeccCCcc-----ccc----cCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeCCCCE
Confidence 3444 5556789999643 222 5899999999999875 556999999999999999999999999999999
Q ss_pred EEECC
Q psy10574 222 IERFD 226 (232)
Q Consensus 222 Ieig~ 226 (232)
|++--
T Consensus 87 l~Ll~ 91 (102)
T 3kt9_A 87 LHMVN 91 (102)
T ss_dssp EEEET
T ss_pred EEEcc
Confidence 99743
No 30
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.09 E-value=2e-10 Score=104.84 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=64.0
Q ss_pred eEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEcc----------CCcEEEEEcC-cCceEECCEEecCC
Q psy10574 143 VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN----------NGDFFIANEG-KRPIYVDGRPIIAS 211 (232)
Q Consensus 143 ~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~----------d~~f~L~nlG-kngi~VNG~~l~~g 211 (232)
.+|++...+.+|||.......+|-+ +++.|||+||+|.++. ...++|+|+| +|||||||+++. +
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~i----dD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~-~ 88 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQV----ISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVG-Q 88 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEEC----CCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECC-T
T ss_pred eEEEecCCeEEECCCCCccCceeec----CCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECC-C
Confidence 4577777779999997654444444 4789999999999863 2369999998 599999999996 5
Q ss_pred CceeC-CCCCeEEECCCCc
Q psy10574 212 NKYKL-NHNSIIERFDRGN 229 (232)
Q Consensus 212 ~~~~L-~~gdiIeig~~~~ 229 (232)
.+..| .+||.|.||..+.
T Consensus 89 ~~~~L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 89 NGDSYKEKDLKIQLGKCPF 107 (325)
T ss_dssp TCEEECSSEEEEEETTCSS
T ss_pred ceeeecCCCCEEEecCCcc
Confidence 55565 5899999998653
No 31
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.07 E-value=4.1e-10 Score=95.26 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=70.6
Q ss_pred ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC----CcEEEEEcCcCceEECCEEecCCCceeCC
Q psy10574 142 AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN----GDFFIANEGKRPIYVDGRPIIASNKYKLN 217 (232)
Q Consensus 142 ~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d----~~f~L~nlGkngi~VNG~~l~~g~~~~L~ 217 (232)
..-|+++...++|||......+||=|+ ...|+++||.|..+.+ +.++|.......|||||++|. .++.|+
T Consensus 83 ~l~y~L~~g~t~VGr~~~~~~~dI~L~----G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~--~~~~L~ 156 (184)
T 4egx_A 83 CLLYYIKDGITRVGREDGERRQDIVLS----GHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT--EPSILR 156 (184)
T ss_dssp CSEEECCSEEEEEECSSSSSCCSEECC----STTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC--SCEECC
T ss_pred eEEEEECCCcCcCCCCCcCCCCeEEEC----ccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc--ccEEcC
Confidence 367999999999999988888999996 3789999999998754 347788777788999999995 579999
Q ss_pred CCCeEEECCCCcc
Q psy10574 218 HNSIIERFDRGNW 230 (232)
Q Consensus 218 ~gdiIeig~~~~~ 230 (232)
|||.|.||+..++
T Consensus 157 ~GDrI~lG~~h~F 169 (184)
T 4egx_A 157 SGNRIIMGKSHVF 169 (184)
T ss_dssp TTCEEEETTTEEE
T ss_pred CCCEEEECCCCEE
Confidence 9999999987543
No 32
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.06 E-value=1.6e-10 Score=90.89 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=62.4
Q ss_pred ccceEEEe--ecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC-CcEEEEEcCcCceEECCEEecCCCceeC
Q psy10574 140 GRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYKL 216 (232)
Q Consensus 140 G~~~~y~m--~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d-~~f~L~nlGkngi~VNG~~l~~g~~~~L 216 (232)
|..-...+ .+..++|||+.... + .++++||+|+.|..+.+ +.+.++.+|.||+++||+.+.+|+.+.|
T Consensus 17 ~~~~~I~Lp~~~g~~viGR~p~t~-----I----~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k~~~~~L 87 (110)
T 2brf_A 17 GEAPPIFLPSDGQALVLGRGPLTQ-----V----TDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSL 87 (110)
T ss_dssp TSSCCEECCSTTCCEEECSBTTTT-----B----CCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEE
T ss_pred CCCCcEEeccCCCCEEEcCCCCcc-----c----ccccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCCCCEEEe
Confidence 44346677 46899999996322 1 24899999999998875 6677899999999999999999999999
Q ss_pred CCCCeEEE
Q psy10574 217 NHNSIIER 224 (232)
Q Consensus 217 ~~gdiIei 224 (232)
++||+|++
T Consensus 88 ~~GD~leL 95 (110)
T 2brf_A 88 GVGDTLYL 95 (110)
T ss_dssp ETTCEEEE
T ss_pred cCCCEEEE
Confidence 99999997
No 33
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.93 E-value=1.1e-09 Score=100.35 Aligned_cols=96 Identities=15% Similarity=0.036 Sum_probs=70.7
Q ss_pred eEEEEEccceEEEeecCeeEeCCCCCCC--CcceecCCCCCCcccchhceeEEEccC--C--cEEEEEcCcCceEECCEE
Q psy10574 134 TYAVLRGRAVRYLMKFRDVTLGRSTADH--SVDIDLSLEGPAWKVSRRQACIRMRNN--G--DFFIANEGKRPIYVDGRP 207 (232)
Q Consensus 134 ~lAvL~G~~~~y~m~~~ei~IGR~s~~~--~VDIDLs~eG~~~~ISR~HA~I~~~~d--~--~f~L~nlGkngi~VNG~~ 207 (232)
.|..+.+....+.+...+.+|||+.+.. -.|.+++..+....|||+||.|....+ + .|||.|.+.||+||||..
T Consensus 12 ~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt~vn~~~ 91 (419)
T 3i6u_A 12 RLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTEL 91 (419)
T ss_dssp EEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCEEETTEE
T ss_pred EeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCceECccc
Confidence 3444444445689999999999986421 222333222223689999999976532 1 399999777999999999
Q ss_pred ecCCCceeCCCCCeEEECCCCc
Q psy10574 208 IIASNKYKLNHNSIIERFDRGN 229 (232)
Q Consensus 208 l~~g~~~~L~~gdiIeig~~~~ 229 (232)
+..|.+.+|.+||.|.+|....
T Consensus 92 ~~~~~~~~l~~~d~i~~~~~~~ 113 (419)
T 3i6u_A 92 VGKGKRRPLNNNSEIALSLSRN 113 (419)
T ss_dssp CCTTCEEECCTTEEEEESSTTC
T ss_pred ccCCCcccCCCCCEeeeecccc
Confidence 9999999999999999997653
No 34
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.91 E-value=2e-09 Score=87.96 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=66.0
Q ss_pred ceEEEEE---ccceEEEe--ecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC-CcEEEEEcCcCceEECCE
Q psy10574 133 QTYAVLR---GRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGR 206 (232)
Q Consensus 133 ~~lAvL~---G~~~~y~m--~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d-~~f~L~nlGkngi~VNG~ 206 (232)
..++.|. |..-...| ...+++|||+... .++ ++++||+|+.|..+.+ +.+.++.+|.||++|||+
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet-----~It----DkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~ 77 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLT-----QVT----DRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVH 77 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBTTT-----TBC----CSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTE
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCCcc-----ccc----cccccceeEEEEEecCCCeEEEEEcccCCcEECCE
Confidence 3445553 34445677 4689999999622 122 4799999999998876 566799999999999999
Q ss_pred EecCCCceeCCCCCeEEE
Q psy10574 207 PIIASNKYKLNHNSIIER 224 (232)
Q Consensus 207 ~l~~g~~~~L~~gdiIei 224 (232)
.+.+|..+.|++||+|++
T Consensus 78 ~L~k~~~~~L~~GD~LeL 95 (143)
T 1yj5_C 78 ELKPGLSGSLSLGDVLYL 95 (143)
T ss_dssp ECCTTCEEEECTTCEEES
T ss_pred EecCCCEEEecCCCEEEE
Confidence 999999999999999985
No 35
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.90 E-value=6.8e-10 Score=88.35 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=62.6
Q ss_pred ccceEEEe--ecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccC-CcEEEEEcCcCceEECCEEecCCCceeC
Q psy10574 140 GRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYKL 216 (232)
Q Consensus 140 G~~~~y~m--~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d-~~f~L~nlGkngi~VNG~~l~~g~~~~L 216 (232)
|..-...+ ...+++|||.... .+ .++++||+|+.++.+.+ +.+.++.+|.||++|||+.+.+++.+.|
T Consensus 24 ~~~~~I~Lp~~~g~~viGRgp~t-----~I----~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~k~~~~~L 94 (119)
T 1ujx_A 24 GGPPPIFLPSDGQALVLGRGPLT-----QV----TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGLSGSL 94 (119)
T ss_dssp SSCCCCCCCTTSCCEEESBBTTT-----TB----CCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCTTCEEEE
T ss_pred CCCCcEEeccCCCCEEEcCCCCc-----cc----ccccccceeEEEEEecCCCEEEEEEcccCCcEECCEEecCCCEEEe
Confidence 44345666 3689999999622 12 25899999999998876 6677899999999999999999999999
Q ss_pred CCCCeEEE
Q psy10574 217 NHNSIIER 224 (232)
Q Consensus 217 ~~gdiIei 224 (232)
++||+|++
T Consensus 95 ~~GD~l~L 102 (119)
T 1ujx_A 95 SLGDVLYL 102 (119)
T ss_dssp ETTCCCBC
T ss_pred cCCCEEEE
Confidence 99999985
No 36
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.68 E-value=2.9e-08 Score=76.87 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=59.1
Q ss_pred EccceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCc-eEECCEEecCCCceeCC
Q psy10574 139 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRP-IYVDGRPIIASNKYKLN 217 (232)
Q Consensus 139 ~G~~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkng-i~VNG~~l~~g~~~~L~ 217 (232)
.|+....+-+..-..|||+. ..++-| +++.|||.||+|....+|.|. -+ ..|| +||||+++ .++.|.
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~---~~~l~L----ddpsVs~~HAti~~~~~G~~~-l~-S~nGtVFVNGqrv---~~~~I~ 77 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQK---GLEISI----ADESMELAHATACILRRGVVR-LA-ALVGKIFVNDQEE---TVVDIG 77 (102)
T ss_dssp TTSCCEECCTTCCEEEESST---TSTEEC----CCTTSCTTCEEEEEEETTEEE-EE-ESSSCEEETTEEE---SEEEEC
T ss_pred CCcccEEeecCcEEEEcCCC---CCcEEE----CCcccccceEEEEecCCceEE-EE-eccCcEEECCEEe---eeEEcc
Confidence 45555555566677899984 224444 368999999999988777544 45 7799 79999999 589999
Q ss_pred CCCe------EEECCCC
Q psy10574 218 HNSI------IERFDRG 228 (232)
Q Consensus 218 ~gdi------Ieig~~~ 228 (232)
+||. +.||.+.
T Consensus 78 ~gDtI~g~v~lrFGnve 94 (102)
T 3uv0_A 78 MENAVAGKVKLRFGNVE 94 (102)
T ss_dssp GGGCBTTEEEEEETTEE
T ss_pred CCcccccEEEEEecCEE
Confidence 9999 7888764
No 37
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.24 E-value=2.4e-06 Score=68.22 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=66.2
Q ss_pred EEEEEcc--ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEccCCcEEEEEcCcCceEECCEEecCCC
Q psy10574 135 YAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASN 212 (232)
Q Consensus 135 lAvL~G~--~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~~g~ 212 (232)
+-++.|. .....+....++||...- .-|+=|. +..|||+|+.|.+..+ .|+|. -.+||+|+||+.+..+.
T Consensus 7 lrvlsG~~~G~~l~L~~~~~~IGs~~~--~~DLvL~----D~~Vs~~H~~L~~~~~-g~~L~-~s~ngt~vdG~~v~~~~ 78 (123)
T 4a0e_A 7 CRFYQGKHRGVEVELPHGRCVFGSDPL--QSDIVLS----DSEIAPVHLVLMVDEE-GIRLT-DSAEPLLQEGLPVPLGT 78 (123)
T ss_dssp EEECSGGGTTCEEEECSEEEEEESCTT--TCSEECC----CTTSCSSCEEEEEETT-EEEEE-EESSCCEETTEECCTTC
T ss_pred EEEecCCCCCcEEEcCCCcEEECCCCC--CCCEEEe----CCCccceeEEEEECCC-eEEEE-eccCCEEECCEEccccc
Confidence 5566666 356778888999999831 1355553 6899999999999875 58886 33699999999988665
Q ss_pred ceeCCCCCeEEECCCCc
Q psy10574 213 KYKLNHNSIIERFDRGN 229 (232)
Q Consensus 213 ~~~L~~gdiIeig~~~~ 229 (232)
.|..|+.+++|++.+
T Consensus 79 --~L~~g~~l~lG~~~l 93 (123)
T 4a0e_A 79 --LLRAGSCLEVGFLLW 93 (123)
T ss_dssp --BCCTTSCEEETTEEE
T ss_pred --ccCCCCEEEEccEEE
Confidence 899999999998753
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.83 E-value=1.2e-05 Score=70.08 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=58.8
Q ss_pred ceEEEEEcc---ceEEEeecCeeEeCCCCCCCCcceecCCCCCCcccchhceeEEEc-cC--CcEEEEEcC-cCc-eEEC
Q psy10574 133 QTYAVLRGR---AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-NN--GDFFIANEG-KRP-IYVD 204 (232)
Q Consensus 133 ~~lAvL~G~---~~~y~m~~~ei~IGR~s~~~~VDIDLs~eG~~~~ISR~HA~I~~~-~d--~~f~L~nlG-kng-i~VN 204 (232)
..+.++... ...|.+.+..++|||.. .-||=| .++ + ||.+..+ .+ +.|+|+++| .|| +|||
T Consensus 72 ~~l~l~~~~~~~~~~y~~~~~~itIG~~~---~~dI~l--~~~---~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvN 140 (238)
T 1wv3_A 72 ITLQLYTEADYASFAYPSIQDTMTIGPNA---YDDMVI--QSL---M---NAIIIKDFQSIQESQYVRIVHDKNTDVYIN 140 (238)
T ss_dssp EEEEEEEGGGEEEEECCSSCSEEEEESST---TSSEEC--TTC---S---SCEEEECGGGHHHHCEEEEECCTTCCEEET
T ss_pred cEEEEEEcCCccEEEEecCCceEEEeCCC---CCeEEe--CCC---e---eEEEEecccCcCCcEEEEEccCCCCCEEEC
Confidence 355555443 34566666699999964 234544 233 2 4777666 22 589999999 588 5999
Q ss_pred CEEecCCCceeCC-CCCeEEECCCCc
Q psy10574 205 GRPIIASNKYKLN-HNSIIERFDRGN 229 (232)
Q Consensus 205 G~~l~~g~~~~L~-~gdiIeig~~~~ 229 (232)
|+.+.. +..|+ .||.|.||++.+
T Consensus 141 g~~i~~--~~~L~~~GD~I~ig~~~~ 164 (238)
T 1wv3_A 141 YELQEQ--LTNKAYIGDHIYVEGIWL 164 (238)
T ss_dssp TEECCS--SEEEEETTCEEEETTEEE
T ss_pred CEEecc--ceeccCCcCEEEECCEEE
Confidence 999953 45899 999999999754
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=91.40 E-value=0.28 Score=38.03 Aligned_cols=57 Identities=19% Similarity=0.415 Sum_probs=43.2
Q ss_pred hhHHHHHHhc-ccchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHhh
Q psy10574 3 NEIRELNLNR-TNDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLG 81 (232)
Q Consensus 3 ~~~~i~av~~-~~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L~ 81 (232)
.+.|+.+|++ +.+-..|+..++ .-|-+.+.+||+..| +|.+ .+.|||.+|++.|.
T Consensus 19 D~~L~~~v~~~G~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~WT~eEd~~L~ 74 (126)
T 3osg_A 19 DEMLKRAVAQHGSDWKMIAATFP---NRNARQCRDRWKNYL-APSI--------------------SHTPWTAEEDALLV 74 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTCT---TCCHHHHHHHHHHHT-STTS--------------------CCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHcC---CCCHHHHHHHHhhhc-cccc--------------------ccccCCHHHHHHHH
Confidence 3578888876 668888877654 358999999999877 3433 36799999999987
Q ss_pred hc
Q psy10574 82 SI 83 (232)
Q Consensus 82 ~~ 83 (232)
..
T Consensus 75 ~~ 76 (126)
T 3osg_A 75 QK 76 (126)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=89.40 E-value=0.42 Score=35.92 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.9
Q ss_pred hhHHHHHHhc-c-cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHh
Q psy10574 3 NEIRELNLNR-T-NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELL 80 (232)
Q Consensus 3 ~~~~i~av~~-~-~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L 80 (232)
.+.|+.+|.. + .+-..|+..++ .-|-..+.+||...| ||.+ .+-|||.+|+++|
T Consensus 9 D~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L-~p~i--------------------~~~~WT~eEd~~L 64 (107)
T 2k9n_A 9 DLKLQQLVMRYGAKDWIRISQLMI---TRNPRQCRERWNNYI-NPAL--------------------RTDPWSPEEDMLL 64 (107)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHTT---TSCHHHHHHHHHHHS-SSCC--------------------TTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhhhcC---CCCHHHHHHHHHHHH-cccc--------------------cccccCHHHHHHH
Confidence 3578888865 3 37788887665 468999999999876 4432 3679999999998
Q ss_pred hhc
Q psy10574 81 GSI 83 (232)
Q Consensus 81 ~~~ 83 (232)
...
T Consensus 65 ~~~ 67 (107)
T 2k9n_A 65 DQK 67 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=89.27 E-value=0.45 Score=35.41 Aligned_cols=57 Identities=16% Similarity=0.350 Sum_probs=42.6
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHh
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELL 80 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L 80 (232)
.+.|+.+|+.- .+-..|+..++ .-|-+.+.+||...| ||.+ .+.|||.+|++.|
T Consensus 12 D~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~Wt~eEd~~L 67 (105)
T 1gv2_A 12 DQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHL-NPEV--------------------KKTSWTEEEDRII 67 (105)
T ss_dssp HHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTT-CCCC--------------------CCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHhhhhc---CCCHHHHHHHHHhcc-CCcc--------------------cccCCCHHHHHHH
Confidence 35788888753 35777877653 568999999999875 3432 3789999999998
Q ss_pred hhc
Q psy10574 81 GSI 83 (232)
Q Consensus 81 ~~~ 83 (232)
...
T Consensus 68 ~~~ 70 (105)
T 1gv2_A 68 YQA 70 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 42
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=88.23 E-value=0.6 Score=36.05 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=42.1
Q ss_pred hHHHHHHhccc--chHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHhh
Q psy10574 4 EIRELNLNRTN--DIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLG 81 (232)
Q Consensus 4 ~~~i~av~~~~--~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L~ 81 (232)
+.|+.+|+.-. +-..|+..++ .-|-..+.+||+..| +|.+ .+.|||.+|+++|.
T Consensus 36 ~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~WT~eEd~~L~ 91 (128)
T 1h8a_C 36 QRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHL-NPEV--------------------KKTSWTEEEDRIIY 91 (128)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHSS---SCCHHHHHHHHHHTT-CSSS--------------------CCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHhc---CCcHHHHHHHHHHhc-cccc--------------------ccccCCHHHHHHHH
Confidence 56788887543 5778877654 568999999999876 4432 37899999999988
Q ss_pred hc
Q psy10574 82 SI 83 (232)
Q Consensus 82 ~~ 83 (232)
..
T Consensus 92 ~~ 93 (128)
T 1h8a_C 92 QA 93 (128)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 43
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.08 E-value=0.35 Score=33.71 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=38.4
Q ss_pred hHHHHHHhc-c-cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHH
Q psy10574 4 EIRELNLNR-T-NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEE 77 (232)
Q Consensus 4 ~~~i~av~~-~-~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee 77 (232)
++|+.+|.+ + ++-..|+.-+. .-|-.++.+||+..| +|.+. +-|||.+|+
T Consensus 18 ~~L~~~v~~~G~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~L-~p~i~--------------------~~~wt~eEd 69 (70)
T 2dim_A 18 EILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWL-DPSIK--------------------KTEWSGPSS 69 (70)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHST---TCCHHHHHHHHHHTS-CSSSC--------------------CCCSCCSCC
T ss_pred HHHHHHHHHHCcCCHHHHHHHhc---CCCHHHHHHHHHHHc-CCccc--------------------CCCCChHhc
Confidence 577888875 3 57888887765 569999999999976 66443 678998886
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=84.71 E-value=1 Score=35.04 Aligned_cols=57 Identities=19% Similarity=0.400 Sum_probs=41.4
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHh
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELL 80 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L 80 (232)
.+.|+.+|.+- .+-..|+..++ .-|-..+.+||+..| ||.+ .+-+||.+|++.|
T Consensus 10 D~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~Wt~eEd~~L 65 (131)
T 3zqc_A 10 DDLIREYVKENGPQNWPRITSFLP---NRSPKQCRERWFNHL-DPAV--------------------VKHAWTPEEDETI 65 (131)
T ss_dssp HHHHHHHHHHHCSCCGGGGTTSCT---TSCHHHHHHHHHHHT-STTC--------------------CCSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHC---CCCHHHHHHHHhhcc-Cccc--------------------cCCCCCHHHHHHH
Confidence 35677777664 46777766553 468999999999876 4433 2679999999988
Q ss_pred hhc
Q psy10574 81 GSI 83 (232)
Q Consensus 81 ~~~ 83 (232)
...
T Consensus 66 ~~~ 68 (131)
T 3zqc_A 66 FRN 68 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=80.96 E-value=2.1 Score=34.13 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=40.8
Q ss_pred hHHHHHHhc-c-cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHhh
Q psy10574 4 EIRELNLNR-T-NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLG 81 (232)
Q Consensus 4 ~~~i~av~~-~-~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L~ 81 (232)
+.|+.+|.. + .+-..|+.-++ .-|-.++.+||+..| +|.+ .+.|||.+|+++|.
T Consensus 67 ~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~WT~eEd~~L~ 122 (159)
T 1h89_C 67 QRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHL-NPEV--------------------KKTSWTEEEDRIIY 122 (159)
T ss_dssp HHHHHHHHHHCSCCHHHHHHTST---TCCHHHHHHHHHHTT-CTTS--------------------CCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHcC---CCCHHHHHHHHHHHh-Cccc--------------------cccCCChHHHHHHH
Confidence 567778864 3 25777766553 568899999999876 3432 37899999999987
Q ss_pred hc
Q psy10574 82 SI 83 (232)
Q Consensus 82 ~~ 83 (232)
..
T Consensus 123 ~~ 124 (159)
T 1h89_C 123 QA 124 (159)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 46
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.74 E-value=1.5 Score=29.83 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEECCEEecCC--CceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIAS--NKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g--~~~~L~~gdiIei 224 (232)
.+.|||+.+++. ...+|++||.|+|
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEE
Confidence 488999999865 4579999999987
No 47
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=76.29 E-value=2.5 Score=36.75 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=50.7
Q ss_pred EEEe--ecCeeEe-CCCCCCCCcceecCCCCC---C--cccchhc----eeEEEccCCcEEEEEcCcCceEECCEEe---
Q psy10574 144 RYLM--KFRDVTL-GRSTADHSVDIDLSLEGP---A--WKVSRRQ----ACIRMRNNGDFFIANEGKRPIYVDGRPI--- 208 (232)
Q Consensus 144 ~y~m--~~~ei~I-GR~s~~~~VDIDLs~eG~---~--~~ISR~H----A~I~~~~d~~f~L~nlGkngi~VNG~~l--- 208 (232)
.|.. ....|+| |--.+...-=+-|+.... + ..-.|+| -+|+++.+|+.|++|++.++|||+.--+
T Consensus 20 ~f~~~~~~~~v~IDG~~dps~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~Vw~~n~S~~~IFVqS~~ln~~ 99 (234)
T 1ygs_A 20 TFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDRE 99 (234)
T ss_dssp EEEEETTCSEEEEESSCCTTCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEEEEEECSSSCEEEECHHHHHT
T ss_pred eEEecCCCCEEEEecCcCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcEEEEecCCCCEEEcCCCcccc
Confidence 4565 5677777 543322222233432211 1 2333444 3577777789999999999999975543
Q ss_pred ---cCC-CceeCCCCCeEEECCC
Q psy10574 209 ---IAS-NKYKLNHNSIIERFDR 227 (232)
Q Consensus 209 ---~~g-~~~~L~~gdiIeig~~ 227 (232)
.|+ ..+++.+|.-|.|=|.
T Consensus 100 ~~~~p~~~V~Ki~pg~~lKvFd~ 122 (234)
T 1ygs_A 100 AGRAPGDAVHKIYPSAYIKVFDL 122 (234)
T ss_dssp TTCCTTCCCEEECTTCEEEEECH
T ss_pred ccCCCCCcEEEeCCCCeEEEeCc
Confidence 223 3468888888877553
No 48
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=74.50 E-value=1 Score=31.96 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=22.3
Q ss_pred CceEECCEEecCCC--ceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASN--KYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~--~~~L~~gdiIei 224 (232)
-.+.|||+.+++.+ ...|++||.|+|
T Consensus 31 vAV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 31 FAVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp CEEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEE
Confidence 46899999998764 579999999998
No 49
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=73.74 E-value=1.5 Score=31.52 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=22.5
Q ss_pred CceEECCEEecCCC--ceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASN--KYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~--~~~L~~gdiIei 224 (232)
-.+.|||+.+++.+ ...|++||.|+|
T Consensus 35 vAVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 35 VTVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CCEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEE
Confidence 46899999998875 379999999998
No 50
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=72.93 E-value=3.2 Score=28.71 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred ceEECCEEecCCCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
-+.|||+.+++.. +|++||.|+|
T Consensus 41 ~vavN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 41 VVKKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EEEETTEECCTTS--BCCTTCEEEE
T ss_pred EEEECCEECCCcc--cCCCCCEEEE
Confidence 4889999998766 8999999987
No 51
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=71.60 E-value=3 Score=29.98 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.2
Q ss_pred CceEECCEEecCCCceeCCCCCeEEECC
Q psy10574 199 RPIYVDGRPIIASNKYKLNHNSIIERFD 226 (232)
Q Consensus 199 ngi~VNG~~l~~g~~~~L~~gdiIeig~ 226 (232)
-+.+|||+.+.. ..+|++||.|+|=-
T Consensus 42 v~AkVNG~~v~L--~~~L~~gd~VeIit 67 (78)
T 3hvz_A 42 IGAKVDGRIVPI--DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEETTEEECT--TCBCCTTCBEEEEE
T ss_pred EEEEECCEEcCC--CcccCCCCEEEEEc
Confidence 457899999886 46799999999843
No 52
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=71.33 E-value=3.7 Score=36.38 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=35.3
Q ss_pred eeEEEccCCcEEEEEcCcCceEECCEEe------cCC-CceeCCCCCeEEECCC
Q psy10574 181 ACIRMRNNGDFFIANEGKRPIYVDGRPI------IAS-NKYKLNHNSIIERFDR 227 (232)
Q Consensus 181 A~I~~~~d~~f~L~nlGkngi~VNG~~l------~~g-~~~~L~~gdiIeig~~ 227 (232)
-+|+++.+|+.|++|++.++|||+.--+ .|+ ..+++.+|.-|.|=|.
T Consensus 103 V~L~~~~~G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~ 156 (268)
T 1dd1_A 103 VQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 156 (268)
T ss_dssp EEEEEETTTEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECH
T ss_pred eEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEecc
Confidence 3577776789999999999999986553 233 4468888888877553
No 53
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=71.04 E-value=1.6 Score=34.84 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred hHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhcChHhhHHHHHhhhcCChHHHHhhhhccCCChHHHHHhh
Q psy10574 4 EIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLG 81 (232)
Q Consensus 4 ~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~~is~~a~~~m~~l~~~~~~~v~~~~~~s~~Ee~~L~ 81 (232)
+.|+.+|++- .+-..|+..++ .-|-..+.+||...| +|.+ .+-|||.+|++.|.
T Consensus 15 ~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l-~p~~--------------------~~~~Wt~eEd~~L~ 70 (159)
T 1h89_C 15 EKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVL-NPEL--------------------IKGPWTKEEDQRVI 70 (159)
T ss_dssp -------------------------------CHHHHHHTTT-CTTC--------------------CCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHcc-CCCc--------------------CCCCCChHHHHHHH
Confidence 4677777653 35667766554 457889999999876 4432 37899999999887
Q ss_pred h
Q psy10574 82 S 82 (232)
Q Consensus 82 ~ 82 (232)
.
T Consensus 71 ~ 71 (159)
T 1h89_C 71 K 71 (159)
T ss_dssp H
T ss_pred H
Confidence 6
No 54
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=70.83 E-value=3.4 Score=28.47 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.1
Q ss_pred ceEECCEEecCCCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
-+.|||+.++.. .+|++||.|+|
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEE
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 589999999863 78999999987
No 55
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=70.83 E-value=3.3 Score=30.39 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=21.8
Q ss_pred CceEECCEEecCCC--ceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASN--KYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~--~~~L~~gdiIei 224 (232)
-.+.|||+.+++.+ ..+|++||.|+|
T Consensus 53 vaVavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 53 VIVERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp CEEEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEEEECCEECChhhcCCcCCCCCCEEEE
Confidence 35899999998743 579999999997
No 56
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=70.52 E-value=2 Score=31.81 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=22.6
Q ss_pred CcCceEECCEEecC--CCceeCCCCCeEEE
Q psy10574 197 GKRPIYVDGRPIIA--SNKYKLNHNSIIER 224 (232)
Q Consensus 197 Gkngi~VNG~~l~~--g~~~~L~~gdiIei 224 (232)
|+.-+.|||+.+.. +...+|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 34468999998864 56789999999987
No 57
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=69.77 E-value=1.8 Score=32.60 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.6
Q ss_pred cCceEECCEEecCCCceeCCCCCeEEEC
Q psy10574 198 KRPIYVDGRPIIASNKYKLNHNSIIERF 225 (232)
Q Consensus 198 kngi~VNG~~l~~g~~~~L~~gdiIeig 225 (232)
...+.|||+.++ ....|++||.|+|-
T Consensus 58 ~~~V~Vng~~v~--~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 58 TNKIGIFSRPIK--LTDVLKEGDRIEIY 83 (97)
T ss_dssp TSEEEEEECSCC--TTCBCCTTCEEEEC
T ss_pred ccEEEEcCEECC--CCccCCCCCEEEEE
Confidence 456899999987 45679999999985
No 58
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=68.04 E-value=1.9 Score=29.38 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=20.9
Q ss_pred ceEECCEEecCC--CceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIAS--NKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g--~~~~L~~gdiIei 224 (232)
.+.|||+.+++. ...+|++||.|+|
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEE
Confidence 489999999863 3578999999987
No 59
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=67.82 E-value=5.7 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=32.7
Q ss_pred hhHHHHHHhcc-----cchHHHHhccccCccccHHHHHHhhHHhhcCh
Q psy10574 3 NEIRELNLNRT-----NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDP 45 (232)
Q Consensus 3 ~~~~i~av~~~-----~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~ 45 (232)
+.+|+.||..- +.-..|+..++ .-|-.++.+||..|+.|+
T Consensus 26 d~~L~~al~~~g~~~~~rW~~IA~~vp---GRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 26 QKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHGGGCS---SSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHHcc
Confidence 45788888775 36788888886 579999999999999886
No 60
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=67.70 E-value=2.4 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=20.6
Q ss_pred CceEECCEEecCCCceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
-.+.|||+.++.. .+|++||.|+|
T Consensus 47 v~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 47 AIAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp SCEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEEECCEECCCC--CCcCCCCEEEE
Confidence 4699999999864 78999999987
No 61
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=64.51 E-value=7.4 Score=35.20 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.8
Q ss_pred eeEEEccCCcEEEEEcC-cCceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 181 ACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 181 A~I~~~~d~~f~L~nlG-kngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
.+++++.+. -.|...| .-...|||++++.+.++.++.||+|+|+...
T Consensus 63 ~~l~f~~~~-~~iAvtGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~ 110 (318)
T 3mml_A 63 FSARVCGGD-VAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGAPH 110 (318)
T ss_dssp CEEEEESSC-EEEEEEESCCCCEETTEECCTTSCEEECTTCEEECCCCS
T ss_pred eEEEECcCC-EEEEEECCCCcceECCEEcCCCeEEEECCCCEEEeCCCC
Confidence 345555431 4677777 4689999999999999999999999998754
No 62
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=64.34 E-value=4.9 Score=27.80 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=21.0
Q ss_pred cCceEECCEEecCCCceeCCCCCeEEE
Q psy10574 198 KRPIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 198 kngi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
.--+.|||+.+. +...+|++||.|.|
T Consensus 42 ~~~vavN~~~v~-~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 42 VCAIALNDHLID-NLNTPLKDGDVISL 67 (74)
T ss_dssp TCEEEESSSEEC-CTTCCCCTTCEEEE
T ss_pred ccEEEECCEEcC-CCCcCCCCCCEEEE
Confidence 346889999874 56689999999986
No 63
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=64.30 E-value=3.8 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.2
Q ss_pred ceEECCEEecC--CCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIA--SNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~--g~~~~L~~gdiIei 224 (232)
-+.|||+.+.. +...+|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 49999998874 56789999999987
No 64
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=62.91 E-value=4.7 Score=29.38 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEEEEcCcCceEECCEEecCCCceeCCCCCeEEE
Q psy10574 191 FFIANEGKRPIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 191 f~L~nlGkngi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
|++++..|..++-.+..+. -+++.+||+|+|
T Consensus 50 ~~irv~NK~~~L~~~~~L~---d~~ItnGD~Lei 80 (81)
T 2bps_A 50 HWIRVVNKDKVFSGECKLS---DCGITNGDRLEI 80 (81)
T ss_dssp CEEEEGGGTEEEETTSBTG---GGTCCTTCEEEE
T ss_pred CEEEEecCCEEEcCCCEEe---eCCcCCCCEEEE
Confidence 8999999977777777776 688999999987
No 65
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=62.67 E-value=7 Score=33.75 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=50.9
Q ss_pred EEEeecCeeEe-CCCCCCCCcceecCCCC---CCc--ccchhc----eeEEEccCCcEEEEEcCcCceEECCEEe-----
Q psy10574 144 RYLMKFRDVTL-GRSTADHSVDIDLSLEG---PAW--KVSRRQ----ACIRMRNNGDFFIANEGKRPIYVDGRPI----- 208 (232)
Q Consensus 144 ~y~m~~~ei~I-GR~s~~~~VDIDLs~eG---~~~--~ISR~H----A~I~~~~d~~f~L~nlGkngi~VNG~~l----- 208 (232)
.|..++..++| |-..+...-=+-|+... .+. .--|+| -+|+++. |+.|++|+++.+|||+..-+
T Consensus 49 ~f~~~~~~v~IDGf~dps~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~~-G~V~~~nlS~~~IFVqS~~~n~~~~ 127 (227)
T 1khx_A 49 TFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG 127 (227)
T ss_dssp CEEECSSEEEEESSCCSSCTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEET-TEEEEEECSSSCEEEECHHHHHHTT
T ss_pred eEEecCCEEEEeCccCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEEC-CEEEEEEcCCCCEEEeCCCcccccC
Confidence 47778888999 33222222223343211 122 234555 4677775 89999999999999976543
Q ss_pred -cCCCceeCCCCCeEEECCC
Q psy10574 209 -IASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 209 -~~g~~~~L~~gdiIeig~~ 227 (232)
.+...+++.+|.-+.|=+.
T Consensus 128 ~~~~tV~Ki~pg~~lKvFd~ 147 (227)
T 1khx_A 128 WHPATVCKIPPGCNLKIFNN 147 (227)
T ss_dssp CCTTCCEEECTTCEEEEEEH
T ss_pred CCcCceEEeCCCCeEEEeCH
Confidence 2345578888888877543
No 66
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=59.09 E-value=8 Score=27.70 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=19.8
Q ss_pred ceEECCEEecCCCceeCCCCCeEEECC
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIERFD 226 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIeig~ 226 (232)
.|.|||+++.+ ...|..||.|.|..
T Consensus 27 ~V~VNg~~~~~--~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 27 AVWLNGSCAKA--SKEVKAGDTISLHY 51 (92)
T ss_dssp CCEETTEECCT--TCBCCTTCEEEECC
T ss_pred cEEECCEEcCC--CCCcCCCCEEEEEe
Confidence 49999998755 45688999999854
No 67
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=57.83 E-value=8 Score=27.38 Aligned_cols=24 Identities=4% Similarity=-0.043 Sum_probs=20.2
Q ss_pred CceEECCEEecCCCceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
--+.|||+.+.. ..+|++||.|.|
T Consensus 59 ~~v~VN~~~v~~--~~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAAAL--GEATAAGDELAL 82 (89)
T ss_dssp SEEEETTEECCT--TSBCCTTCEEEE
T ss_pred EEEEECCEECCC--CcccCCCCEEEE
Confidence 358999999975 568999999987
No 68
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=57.54 E-value=3.6 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.2
Q ss_pred ceEECCEEe-cCCCceeCCCCCeEEECCCC
Q psy10574 200 PIYVDGRPI-IASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 200 gi~VNG~~l-~~g~~~~L~~gdiIeig~~~ 228 (232)
.++|||+.+ .++. .+..||.|++.|..
T Consensus 47 ~V~VNG~~v~~~~~--~v~~gd~I~v~~~~ 74 (79)
T 1p9k_A 47 QVKVDGAVETRKRC--KIVAGQTVSFAGHS 74 (79)
T ss_dssp HHEETTBCCCCSSC--CCCSSEEEEETTEE
T ss_pred EEEECCEEecCCCC--CCCCCCEEEECCEE
Confidence 489999987 4544 46789999998865
No 69
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=55.78 E-value=7.2 Score=28.43 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.8
Q ss_pred ceEECCEEecCCCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
-+.|||+.+.. ..+|++||.|.|
T Consensus 69 ~v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEEECCEECCC--CCCCCCCCEEEE
Confidence 48999999874 578999999987
No 70
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=55.36 E-value=10 Score=26.20 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=19.8
Q ss_pred CceEECCEEecCCCceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
--+.|||+.+.. ..+|++||.|.|
T Consensus 51 ~~v~vN~~~v~~--~~~l~~gD~V~i 74 (81)
T 1fm0_D 51 LLAAVNQTLVSF--DHPLTDGDEVAF 74 (81)
T ss_dssp CEEEETTEECCT--TCBCCTTCEEEE
T ss_pred EEEEECCEECCC--CCCCCCCCEEEE
Confidence 359999998863 568999999987
No 71
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=55.16 E-value=8 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=20.6
Q ss_pred ceEECCEEecC--CCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIA--SNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~--g~~~~L~~gdiIei 224 (232)
-+.|||+.+.. |...+|++||.|.|
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 48999999874 45689999999986
No 72
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=54.26 E-value=16 Score=24.97 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=32.8
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhc
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLY 43 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~lly 43 (232)
.+.|+.+|++- ++-..|+.-++|+ .-|-..+.+||+.+|-
T Consensus 18 D~~L~~~v~~~G~~~W~~Ia~~~~~~-~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 18 DKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKK 59 (69)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHSCCS-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHcCcC-CCCHHHHHHHHHHHcC
Confidence 35788888873 5899999988885 5699999999999873
No 73
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.53 E-value=10 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=19.8
Q ss_pred ceEECCEEecCCCceeCCCCCeEEECC
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIERFD 226 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIeig~ 226 (232)
++.|||+.+.. ..+|.+||.|+|=.
T Consensus 38 aa~vNg~lvdl--~~~L~~~~~Veivt 62 (73)
T 2kmm_A 38 GAKVNHKLVPL--SYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEETTEECCT--TCBCCSSSBEEEEE
T ss_pred EEEECCEEeCC--CcCcCCCCEEEEEE
Confidence 45789998876 47899999998743
No 74
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=53.48 E-value=6.4 Score=27.79 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.5
Q ss_pred ceEECCEEecCCCceeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIei 224 (232)
-+.|||+.+++.+ .+ .||.|+|
T Consensus 38 vV~vNG~~v~~d~--~l-~GD~VeI 59 (74)
T 2l32_A 38 TVLVDGRPVPEDQ--SV-EVDRVKV 59 (74)
T ss_dssp CEECCCCCCCTTS--SS-CCCCEEE
T ss_pred EEEECCEECCHHH--CC-CCCEEEE
Confidence 5899999999887 34 4999997
No 75
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=53.19 E-value=11 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.9
Q ss_pred eEECCEEecCCC-ceeCCCCCeEEEC
Q psy10574 201 IYVDGRPIIASN-KYKLNHNSIIERF 225 (232)
Q Consensus 201 i~VNG~~l~~g~-~~~L~~gdiIeig 225 (232)
..|||+++..|. .++|++||.|+|-
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEEE
Confidence 468999999997 5899999999984
No 76
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=50.52 E-value=13 Score=35.53 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=36.1
Q ss_pred eeEEEccCCcEEEEEcCc-CceEECCEEecCCCceeCCCCCeEEECCCC
Q psy10574 181 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIERFDRG 228 (232)
Q Consensus 181 A~I~~~~d~~f~L~nlGk-ngi~VNG~~l~~g~~~~L~~gdiIeig~~~ 228 (232)
.+++++. .-.|...|- -...|||++++.+.++.++.||+++|+...
T Consensus 281 ~~l~f~~--~~~iAvtGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~ 327 (494)
T 3oep_A 281 PVLTALR--DLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRG 327 (494)
T ss_dssp CEEEESS--CEEEEEEESSEEEEETTEEECSSEEEEECTTCEEEEEECS
T ss_pred eEEEEcC--CeEEEEECCCCcceECCEEccCCeEEEECCCCEEEeCCCC
Confidence 3444443 346777774 688999999999999999999999998643
No 77
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=49.42 E-value=14 Score=32.20 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=51.9
Q ss_pred eEEEeecCeeEe--CCCCCCCCcceecCCCC---CCc--ccchhc----eeEEEccCCcEEEEEcCcCceEECCEEe---
Q psy10574 143 VRYLMKFRDVTL--GRSTADHSVDIDLSLEG---PAW--KVSRRQ----ACIRMRNNGDFFIANEGKRPIYVDGRPI--- 208 (232)
Q Consensus 143 ~~y~m~~~ei~I--GR~s~~~~VDIDLs~eG---~~~--~ISR~H----A~I~~~~d~~f~L~nlGkngi~VNG~~l--- 208 (232)
..|..+...++| +....+..-=+-|+... ... .-.|+| -+|++. +|+.|++|++..+|||+..-+
T Consensus 65 e~F~a~~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~-~G~V~~~nlS~~~IFVqS~~~n~~ 143 (245)
T 3gmj_D 65 EVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYV-TGEVYAECLSDSAIFVQSRNCNYQ 143 (245)
T ss_dssp EEEEECSSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEE-TTEEEEEECSSSCEEEEEHHHHHH
T ss_pred cceeecCCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEE-CCEEEEEecCCCcEEECCCccccc
Confidence 346678888888 34433221233343221 122 223344 356776 489999999999999984442
Q ss_pred ---cCCCceeCCCCCeEEECCC
Q psy10574 209 ---IASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 209 ---~~g~~~~L~~gdiIeig~~ 227 (232)
.++..+++.+|.-+.|=+.
T Consensus 144 ~g~~~~tV~KI~pg~slKiFd~ 165 (245)
T 3gmj_D 144 HGFHPSTVCKIPPGCSLKIFNN 165 (245)
T ss_dssp TTCCTTCCEEECTTCEEEEECH
T ss_pred CCCCccceEEeCCCCeEEEeCH
Confidence 2445678889988887654
No 78
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=48.24 E-value=8.3 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred eEECCEEec--CCCceeCCCCCeEEE
Q psy10574 201 IYVDGRPII--ASNKYKLNHNSIIER 224 (232)
Q Consensus 201 i~VNG~~l~--~g~~~~L~~gdiIei 224 (232)
++|||+.+. .|-.++|++||.|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 899999865 578899999999987
No 79
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=48.19 E-value=22 Score=22.95 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=32.0
Q ss_pred hhHHHHHHhc-c-cchHHHHhccccCccccHHHHHHhhHHhh
Q psy10574 3 NEIRELNLNR-T-NDIKAVHRGLKFSCKFTFNECLQRWFTLL 42 (232)
Q Consensus 3 ~~~~i~av~~-~-~~l~~v~~~~~Fs~~fT~~ei~~Rw~~ll 42 (232)
.+.|+.+|+. + ++-..|+.-++|. .-|-..+.+||..++
T Consensus 10 d~~L~~~v~~~G~~~W~~Ia~~~~~~-~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 10 DKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHcCCC-CCCHHHHHHHHHHHH
Confidence 3578888886 3 5899999988875 569999999999886
No 80
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=46.93 E-value=14 Score=28.71 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.0
Q ss_pred ceEECCEEecCCCceeCCCCCeEEEC
Q psy10574 200 PIYVDGRPIIASNKYKLNHNSIIERF 225 (232)
Q Consensus 200 gi~VNG~~l~~g~~~~L~~gdiIeig 225 (232)
.|.|||+.+.++ ..|..||.|.|.
T Consensus 35 ~V~VNG~~vk~s--~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRSKPS--KIVELNATLTLR 58 (133)
T ss_dssp CEEETTEECCTT--CBCCTTCEEEEE
T ss_pred cEEECCEEcCCC--CEeCCCCEEEEE
Confidence 499999998664 457889999884
No 81
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.01 E-value=9.5 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.9
Q ss_pred eEECCEEec--CCCceeCCCCCeEEE
Q psy10574 201 IYVDGRPII--ASNKYKLNHNSIIER 224 (232)
Q Consensus 201 i~VNG~~l~--~g~~~~L~~gdiIei 224 (232)
++|||+.+. .|-.++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 999999754 677899999999987
No 82
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=41.65 E-value=35 Score=21.66 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred hhHHHHHHhc-cc-chHHHHhccccCccccHHHHHHhhHHhh
Q psy10574 3 NEIRELNLNR-TN-DIKAVHRGLKFSCKFTFNECLQRWFTLL 42 (232)
Q Consensus 3 ~~~~i~av~~-~~-~l~~v~~~~~Fs~~fT~~ei~~Rw~~ll 42 (232)
.+.|+.+|.+ +. +-..|+.-++ .-|-.++.+||+.+|
T Consensus 11 D~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 11 DEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVL 49 (52)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHTST---TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHHc
Confidence 3567788876 33 6777776653 569999999999887
No 83
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=40.74 E-value=15 Score=29.75 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=21.5
Q ss_pred CceEECCEEecC--CCceeCCCCCeEEE
Q psy10574 199 RPIYVDGRPIIA--SNKYKLNHNSIIER 224 (232)
Q Consensus 199 ngi~VNG~~l~~--g~~~~L~~gdiIei 224 (232)
--+.|||+.+.. +...+|++||.|.|
T Consensus 53 v~VaVNg~~v~~~~~~dt~L~dGDeVai 80 (168)
T 1v8c_A 53 VSVFLEGRDVRYLQGLSTPLSPGATLDL 80 (168)
T ss_dssp CEEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEEECCEECCCcCCCccCCCCCCEEEE
Confidence 359999999876 34678999999987
No 84
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=40.66 E-value=35 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhh
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLL 42 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~ll 42 (232)
.+.|+.+|++- .+=..|+.-++|.. -|-..+.+||+.|+
T Consensus 19 D~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 19 SEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMK 59 (64)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHh
Confidence 46788898863 47888988777753 59999999999876
No 85
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=40.33 E-value=19 Score=26.24 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.0
Q ss_pred eEECCEEec--CCCceeCCCCCeEEE
Q psy10574 201 IYVDGRPII--ASNKYKLNHNSIIER 224 (232)
Q Consensus 201 i~VNG~~l~--~g~~~~L~~gdiIei 224 (232)
+.|||+.+. .+...+|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 999999865 355789999999876
No 86
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=39.84 E-value=12 Score=23.99 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.8
Q ss_pred ccCCChHHHHHhhhc
Q psy10574 69 KALFSNDEEELLGSI 83 (232)
Q Consensus 69 ~~~~s~~Ee~~L~~~ 83 (232)
+.+||.+|++.|...
T Consensus 3 k~~Wt~eED~~L~~~ 17 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKL 17 (52)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999999998773
No 87
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=36.11 E-value=12 Score=26.54 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.2
Q ss_pred ccCCChHHHHHhhhc
Q psy10574 69 KALFSNDEEELLGSI 83 (232)
Q Consensus 69 ~~~~s~~Ee~~L~~~ 83 (232)
+.|||.+|+++|..+
T Consensus 23 k~~wT~EED~~L~~l 37 (73)
T 2llk_A 23 VGKYTPEEIEKLKEL 37 (73)
T ss_dssp CCSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999998874
No 88
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=34.60 E-value=29 Score=27.76 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=27.0
Q ss_pred ccchhceeEEEccCCcEEEEEcCcCceEECCEEe-cCCCceeCCCCCeEEECC
Q psy10574 175 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPI-IASNKYKLNHNSIIERFD 226 (232)
Q Consensus 175 ~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l-~~g~~~~L~~gdiIeig~ 226 (232)
..||.+|.=-... | .|.|||+.+ .|+. .+..||.|++.+
T Consensus 63 ~~SR~~ar~lI~~-G----------~V~VNG~~v~~ps~--~V~~gD~I~V~~ 102 (159)
T 1c05_A 63 ARTRRQARQLVTH-G----------HILVDGSRVNIPSY--RVKPGQTIAVRE 102 (159)
T ss_dssp CSSHHHHHHHHHT-T----------CEEETTEECCCSSC--BCCTTCEEEECG
T ss_pred cCCHHHHHHHHHC-C----------CEEECCEEeCcCCc--EeCCCCEEEEeC
Confidence 3578877543332 3 389999998 4644 567899999865
No 89
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.50 E-value=9.7 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=28.3
Q ss_pred chhceeEEEccCCcEEEEEcCcCceEECCEEe-cCCCceeCCCCCeEEECCC
Q psy10574 177 SRRQACIRMRNNGDFFIANEGKRPIYVDGRPI-IASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 177 SR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l-~~g~~~~L~~gdiIeig~~ 227 (232)
||.||.=.... | -++|||+.+ .||..+...++|.|++.+.
T Consensus 22 SR~~A~~lI~~-G----------~V~Vng~~v~kps~~V~~~~~d~I~~~~~ 62 (71)
T 2cqj_A 22 HLQAAVAFVEQ-G----------HVRVGPDVVTDPAFLVTRSMEDFVTWVDS 62 (71)
T ss_dssp SHHHHHHHHHT-T----------CEEETTBCCCCTTCEEEHHHHTTEEESCC
T ss_pred CHHHHHHHHHC-C----------cEEECCEEECCCCCCCCCCCCcEEEEECC
Confidence 67777554443 3 388999987 5888888777888886543
No 90
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=34.17 E-value=31 Score=36.40 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=35.7
Q ss_pred eeEEEccCCcEEEEEcCc-CceEECCEEecCCCceeCCCCCeEEECCC
Q psy10574 181 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 181 A~I~~~~d~~f~L~nlGk-ngi~VNG~~l~~g~~~~L~~gdiIeig~~ 227 (232)
.++++.. .-.|...|- -...|||++++.+.++.++.||+|.||..
T Consensus 537 ~~l~f~~--~~~ia~tGa~~~~~l~g~~~~~~~~~~v~~G~~L~~g~~ 582 (1236)
T 3va7_A 537 PKLLFHT--ETVIAVSGGTVSCTLNDAQIAQNEPIEVKRGDILSVGKV 582 (1236)
T ss_dssp CEEEESS--CEEEEEEEEEEEEEETTEECCTTSCEEECSSCEEEEEEE
T ss_pred eEEEECC--ceEEEEECCCCcceECCEEccCCeEEEeCCCCEEEeCCC
Confidence 3444443 356777784 68899999999999999999999999864
No 91
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=33.71 E-value=17 Score=24.50 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=12.9
Q ss_pred ccCCChHHHHHhhh
Q psy10574 69 KALFSNDEEELLGS 82 (232)
Q Consensus 69 ~~~~s~~Ee~~L~~ 82 (232)
|+|||.+|+++|..
T Consensus 2 R~~FT~edD~~L~~ 15 (59)
T 1fex_A 2 RIAFTDADDVAILT 15 (59)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 68999999999987
No 92
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.82 E-value=16 Score=24.64 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.7
Q ss_pred hccCCChHHHHHhhhc
Q psy10574 68 AKALFSNDEEELLGSI 83 (232)
Q Consensus 68 ~~~~~s~~Ee~~L~~~ 83 (232)
.+.+||.+|++.|..+
T Consensus 8 ~k~~WT~eED~~L~~~ 23 (66)
T 2din_A 8 KKTEWSREEEEKLLHL 23 (66)
T ss_dssp SCCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4679999999999875
No 93
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=32.82 E-value=49 Score=21.63 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=28.7
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhc
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLY 43 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~lly 43 (232)
.+.|+.+|.+- ++-..|+.-++ .-|-.++.+||+.+|-
T Consensus 16 D~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 16 DEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHCS---SSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHcc---CCCHHHHHHHHHHHcC
Confidence 35788888763 37888877653 4699999999998763
No 94
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=30.43 E-value=34 Score=25.27 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=30.9
Q ss_pred hhHHHHHHhcc-----cchHHHHhccccCccccHHHHHHhhHHhhcC
Q psy10574 3 NEIRELNLNRT-----NDIKAVHRGLKFSCKFTFNECLQRWFTLLYD 44 (232)
Q Consensus 3 ~~~~i~av~~~-----~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd 44 (232)
+.+|+.|+.+- +.-..|+..++ .-|-.||.+||..|+-|
T Consensus 16 d~~L~~al~~~~~~~~~rW~~IA~~vp---GRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 16 NKAFERALAVYDKDTPDRWANVARAVE---GRTPEEVKKHYEILVED 59 (93)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHST---TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 45778888754 55788888885 46999999999999865
No 95
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.97 E-value=64 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=31.1
Q ss_pred hhHHHHHHhcc--cchHHHHhccccCccccHHHHHHhhHHhhcCh
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGLKFSCKFTFNECLQRWFTLLYDP 45 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~~Fs~~fT~~ei~~Rw~~llyd~ 45 (232)
.+.|+.+|+.- ++-..|+.-++ .-|-.++.+||...|.+.
T Consensus 16 D~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 16 EMALLEAVMDCGFGNWQDVANQMC---TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHHT---TSCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCcCcHHHHHHHhC---CCCHHHHHHHHHHHccCC
Confidence 35688888763 47888888774 469999999999988753
No 96
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=28.47 E-value=38 Score=28.35 Aligned_cols=40 Identities=38% Similarity=0.510 Sum_probs=27.9
Q ss_pred ccchhceeEEEccCCcEEEEEcCcCceEECCEEec-CCCceeCCCCCeEEECCC
Q psy10574 175 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 175 ~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~-~g~~~~L~~gdiIeig~~ 227 (232)
..||.+|.=-... | .|.|||+.+. |+ ..+..||+|++.+.
T Consensus 111 ~~SR~~arqLI~~-G----------~V~VNG~~v~~ps--~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 111 AVSRRQARQLVRH-G----------HITVNGRRVDLPS--YRVRPGDEIAVAEK 151 (209)
T ss_dssp SSSHHHHHHHHHT-T----------CEEETTEECCCTT--CBCCTTCEEEECGG
T ss_pred cCCHHHHHHHHHC-C----------CEEECCEEeCcCC--cCcCCCCEEEEcCc
Confidence 3688887644332 3 3899999984 54 45678999999653
No 97
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=26.94 E-value=1e+02 Score=23.25 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=41.4
Q ss_pred hhHHHHHHhc--ccchHHHHhcc--ccCccccHHHHHHhhHHhh----cChHhhHHHHHhhhcCChHHHHhh
Q psy10574 3 NEIRELNLNR--TNDIKAVHRGL--KFSCKFTFNECLQRWFTLL----YDPNLSRLAVQGMQNLHPEVVHNI 66 (232)
Q Consensus 3 ~~~~i~av~~--~~~l~~v~~~~--~Fs~~fT~~ei~~Rw~~ll----yd~~is~~a~~~m~~l~~~~~~~v 66 (232)
.+.|+.+|+. ...=..|.+.. .| ..-|-.+|.+||+.|+ ++|.+. +-..+|+++...|
T Consensus 21 d~~L~~gV~k~G~g~W~~I~~~~~~~f-~~RT~v~lKdrWrnllk~~~~~p~~~-----rg~~~P~~~l~rv 86 (105)
T 2aje_A 21 VEALVQAVEKLGTGRWRDVKLCAFEDA-DHRTYVDLKDKWKTLVHTAKISPQQR-----RGEPVPQELLNRV 86 (105)
T ss_dssp HHHHHHHHHHHCSSSHHHHHSSSSSST-TCCCHHHHHHHHHHHHHTTTCCTTTT-----TCCSCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhccCCcccc-----cCCCCCHHHHHHH
Confidence 3678888886 23677787755 23 6789999999999999 467653 3356677766644
No 98
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.54 E-value=26 Score=24.09 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.9
Q ss_pred hccCCChHHHHHhhh
Q psy10574 68 AKALFSNDEEELLGS 82 (232)
Q Consensus 68 ~~~~~s~~Ee~~L~~ 82 (232)
.+.+||.+|+++|..
T Consensus 8 ~~~~WT~eEd~~l~~ 22 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQ 22 (72)
T ss_dssp CCCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 477999999999876
No 99
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=25.33 E-value=1e+02 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=29.7
Q ss_pred hhHHHHHHhcc--cchHHHHhcc--ccCccccHHHHHHhhHHhhc
Q psy10574 3 NEIRELNLNRT--NDIKAVHRGL--KFSCKFTFNECLQRWFTLLY 43 (232)
Q Consensus 3 ~~~~i~av~~~--~~l~~v~~~~--~Fs~~fT~~ei~~Rw~~lly 43 (232)
.+.|+.+|++- ..-..|.+.. .| ..-|-.+|.+||+.++-
T Consensus 39 d~~L~~gV~k~G~g~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 39 VELLVEAVEHLGTGRWRDVKFRAFENV-HHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHSSS-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChHHHHHHhcccc-CCCCHHHHHHHHHHHHh
Confidence 36788888763 3667776643 34 57899999999999984
No 100
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=25.33 E-value=71 Score=23.00 Aligned_cols=43 Identities=12% Similarity=0.354 Sum_probs=31.7
Q ss_pred hceeEEEccCCcEEEEEcCcCceEECCEEecCCCceeCCC--CCeEEEC
Q psy10574 179 RQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNH--NSIIERF 225 (232)
Q Consensus 179 ~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~~g~~~~L~~--gdiIeig 225 (232)
.++.++-..++.|++...+ +||-..+.||.++.|.. ..++++-
T Consensus 31 ~~~iVkss~g~~~~V~v~~----~Vd~~~LkpG~rVaLn~~s~~Iv~vL 75 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSH----FVNPDDLAPGKRVCLNQQTLTVVDVL 75 (85)
T ss_dssp TEEEEEETTSSEEEEEBCT----TSCGGGCCTTCEEEECTTTCCEEEEC
T ss_pred CEEEEEeCCCCeEEEEecC----ccCHHHCCCCCEEEECCcccCHhhhh
Confidence 3677776666788888776 37777889999999886 5555553
No 101
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.96 E-value=43 Score=22.25 Aligned_cols=18 Identities=39% Similarity=0.276 Sum_probs=14.8
Q ss_pred HHHHhhHHHHHHHHHhhh
Q psy10574 97 LLILEKKELKKVEEEMKN 114 (232)
Q Consensus 97 d~r~~~~~i~~le~e~~~ 114 (232)
|+|+.+++|+.||.+.|=
T Consensus 22 ~lrk~kk~iKklEdeNPW 39 (50)
T 1a92_A 22 DLRKLKKKIKKLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhhccCCc
Confidence 447889999999999873
No 102
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=24.71 E-value=31 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=12.0
Q ss_pred ccCCChHHHHHhhh
Q psy10574 69 KALFSNDEEELLGS 82 (232)
Q Consensus 69 ~~~~s~~Ee~~L~~ 82 (232)
+-+||.+|++.|..
T Consensus 9 ~~~WT~eED~~L~~ 22 (58)
T 2elk_A 9 DENWGADEELLLID 22 (58)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 56899999999876
No 103
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=23.20 E-value=1.5e+02 Score=21.16 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=38.1
Q ss_pred hhHHHHHHhcc-c-chHHHHhccc-cCccccHHHHHHhhHHhh----cChHhhHHHHHhhhcCChHHHHh
Q psy10574 3 NEIRELNLNRT-N-DIKAVHRGLK-FSCKFTFNECLQRWFTLL----YDPNLSRLAVQGMQNLHPEVVHN 65 (232)
Q Consensus 3 ~~~~i~av~~~-~-~l~~v~~~~~-Fs~~fT~~ei~~Rw~~ll----yd~~is~~a~~~m~~l~~~~~~~ 65 (232)
.+.|+.+|+.- . .=..|.+... +-..-|-.+|.+||+.+| .+|.+. +-+.+|+++...
T Consensus 8 d~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~-----~~~~~p~~~~~r 72 (83)
T 2ckx_A 8 VEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR-----RGEPVPQDLLDR 72 (83)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGC-----CSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccc-----cCCCCCHHHHHH
Confidence 35788888763 2 5777776432 125679999999999998 466543 235566665443
No 104
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.83 E-value=35 Score=23.46 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=12.2
Q ss_pred ccCCChHHHHHhhh
Q psy10574 69 KALFSNDEEELLGS 82 (232)
Q Consensus 69 ~~~~s~~Ee~~L~~ 82 (232)
+.+||.+|+++|..
T Consensus 8 ~~~WT~eEd~~L~~ 21 (75)
T 2yum_A 8 NQLWTVEEQKKLEQ 21 (75)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 57999999998876
No 105
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.69 E-value=58 Score=27.30 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=27.8
Q ss_pred cchhceeEEEccCCcEEEEEcCcCceEECCEEec-CCCceeCCCCCeEEECCC
Q psy10574 176 VSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 176 ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~-~g~~~~L~~gdiIeig~~ 227 (232)
.||.+|.=-... | -|.|||+.+. |+ ..+..||+|++.+.
T Consensus 102 ~SR~~ArqLI~~-G----------~V~VNG~~V~~pS--~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 102 PTIPGARQLVNH-R----------HILVNGRIVDIPS--YRCKPQDTIMARDE 141 (201)
T ss_dssp SSSHHHHHHHHT-T----------CEEETTEECCCTT--CBCCTTEEEEECSS
T ss_pred CCHHHHHHHHhC-C----------cEEeCCEEEeecc--eecCCCCEEEEccc
Confidence 588888665543 4 3889999874 43 45678999999764
No 106
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=22.52 E-value=25 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=21.0
Q ss_pred EEcCcCceEECCEEecCCCceeCCCCCeEEEC
Q psy10574 194 ANEGKRPIYVDGRPIIASNKYKLNHNSIIERF 225 (232)
Q Consensus 194 ~nlGkngi~VNG~~l~~g~~~~L~~gdiIeig 225 (232)
..-|+ .+.+||+.+. ..+.|.+||+|+|-
T Consensus 57 ~VwG~-saK~~~qrVg--ldh~L~d~DVV~Iv 85 (93)
T 2eki_A 57 LVWGL-SVKHNPQKVG--KDHTLEDEDVIQIV 85 (93)
T ss_dssp EEBST-TSSSSSEEEC--SSCCCCSSEEECEE
T ss_pred EEecc-cccCCCEECC--CCcEecCCCEEEEE
Confidence 34465 4667887775 46789999999984
No 107
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=22.09 E-value=67 Score=22.26 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=20.1
Q ss_pred ceEECCEEecCCCc---eeCCCCCeEEEC
Q psy10574 200 PIYVDGRPIIASNK---YKLNHNSIIERF 225 (232)
Q Consensus 200 gi~VNG~~l~~g~~---~~L~~gdiIeig 225 (232)
-+..+|++|.+.+. .-|.+||+|++-
T Consensus 50 rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 50 SFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35568999988764 469999999874
No 108
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=21.23 E-value=61 Score=26.84 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=25.8
Q ss_pred ccchhceeEEEccCCcEEEEEcCcCceEECCEEec-CCCceeCCCCCeEEECC
Q psy10574 175 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIERFD 226 (232)
Q Consensus 175 ~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~-~g~~~~L~~gdiIeig~ 226 (232)
.+||..+.=.+. .| .++|||+++. ++ .+++.||.|.+.+
T Consensus 15 ~~SR~~~~~li~-~G----------~V~VNG~~v~~~~--~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 15 GVSRAIAGREIR-GN----------RVTVDGEIVRNAA--FKLLPEHDVAYDG 54 (234)
T ss_dssp TCCHHHHHHHHH-TT----------CEEETTEECCCTT--CEECTTCCEEETT
T ss_pred CCCHHHHHHHHH-cC----------eEEECCEEeCCCC--CCCCCCCEEEEeC
Confidence 467766654333 23 3889999885 53 4578899998864
No 109
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.90 E-value=62 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=19.0
Q ss_pred ceEECCEEecCCCc---eeCCCCCeEEE
Q psy10574 200 PIYVDGRPIIASNK---YKLNHNSIIER 224 (232)
Q Consensus 200 gi~VNG~~l~~g~~---~~L~~gdiIei 224 (232)
-+..+|++|.+.+. .-+.+||+|++
T Consensus 43 rf~fdG~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 43 RFRFDGQPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 35568888887753 46889999986
No 110
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=20.54 E-value=63 Score=28.26 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=29.1
Q ss_pred cccchhceeEEEccCCcEEEEEcCcCceEECCEEecCCCceeCCCCCeEEECCC
Q psy10574 174 WKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIERFDR 227 (232)
Q Consensus 174 ~~ISR~HA~I~~~~d~~f~L~nlGkngi~VNG~~l~~g~~~~L~~gdiIeig~~ 227 (232)
...||+.+.-.+.. | .|+|||+.+.++. .+..||.|.+.+.
T Consensus 17 g~~SR~~a~~lI~~-G----------~V~VNG~~v~~~~--~V~~gD~I~v~~~ 57 (290)
T 3dh3_A 17 GICSRREADRYIEQ-G----------NVFLNGKRATIGD--QVKPGDVVKVNGQ 57 (290)
T ss_dssp TSSCHHHHHHHHHT-T----------CEEETTEECCTTC--EECTTCCEEETTE
T ss_pred CCCCHHHHHHHHHC-C----------CEEECCEEccCCc--CcCCCCEEEeccc
Confidence 35688887665543 3 3889999986554 5778999998763
Done!