RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10574
(232 letters)
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 44.9 bits (106), Expect = 2e-06
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 137 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 194
G + L +VT+GR V L + +SR ++ G + I
Sbjct: 13 RRVGMSAGWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 69
Query: 195 NEGKRP-IYVDGRPIIASNKYKLNHNSIIE 223
+ ++++ + Y ++ I+
Sbjct: 70 DNKSLNGVWLNRARLEPLRVYSIHQGDYIQ 99
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 45.3 bits (107), Expect = 2e-06
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 144 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 202
L +VT+GR V L + +SR ++ G + I + ++
Sbjct: 30 LLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVW 86
Query: 203 VDGRPIIASNKYKLNHNSIIE 223
++ + Y ++ I+
Sbjct: 87 LNRARLEPLRVYSIHQGDYIQ 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 42.6 bits (99), Expect = 2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 101 EKKELKKVEEEMKNWAVIVDHVTGSNTPEL 130
EK+ LKK++ +K +A S P L
Sbjct: 18 EKQALKKLQASLKLYA------DDS-APAL 40
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 42.4 bits (99), Expect = 2e-05
Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 9/112 (8%)
Query: 120 DHVTGSNTPELDKQTYAVLRGRAVRYLMKF---RDVTLGRSTADHSV--DIDLSLEGPAW 174
E +A L + + GR + + L
Sbjct: 15 QEPEDQEPEEPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYR 74
Query: 175 KVSRRQACIRMRNNGD----FFIANEGKRPIYVDGRPIIASNKYKLNHNSII 222
S++ I +I + +V+ + + LN+NS I
Sbjct: 75 TYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEI 126
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 41.0 bits (96), Expect = 4e-05
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 139 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 198
R + Y ++ +G D D + L GP + + +
Sbjct: 25 RDKPKLYRLQLSVTEVGTEKFD---DNSIQLFGP--GIQPHHCDLTNMDGVVTVTPRSMD 79
Query: 199 RPIYVDGRPIIASNKYKLNHNSII 222
YVDG+ I S L +
Sbjct: 80 AETYVDGQRI--SETTMLQSGMRL 101
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 41.2 bits (96), Expect = 6e-05
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 152 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIAS 211
T GR+ D L + ++S + I + +G+ + + +++G+ + +
Sbjct: 66 WTFGRNP-----ACDYHLGNIS-RLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKN 119
Query: 212 NKYKLNHNSIIE 223
+ L+ I
Sbjct: 120 SNQLLSQGDEIT 131
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 39.4 bits (92), Expect = 1e-04
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 152 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIAS 211
T GR+ D L + ++S + I + +G+ + + +++G+ + +
Sbjct: 38 WTFGRNP-----ACDYHLGNIS-RLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKN 91
Query: 212 NKYKLNHNSII 222
+ L+ I
Sbjct: 92 SNQLLSQGDEI 102
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 38.2 bits (89), Expect = 3e-04
Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 138 LRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG 197
G A+ + +GR + +++++ +S + I ++G++ I + G
Sbjct: 22 REGDALD-YKPGSTIRVGRIVRGN----EIAIKDAG--ISTKHLRIE-SDSGNWVIQDLG 73
Query: 198 KR-PIYVDGRPIIASNKYKLNHNSIIE 223
++ + L +I+
Sbjct: 74 SSNGTLLNSNALDPETSVNLGDGDVIK 100
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 38.3 bits (89), Expect = 4e-04
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 137 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 194
V RG R+L+ T GR + D+ L+ VSRR A R N G+F +
Sbjct: 51 VKRGPNAGARFLLDQPTTTAGRHP-----ESDIFLDDVT--VSRRHAEFR-INEGEFEVV 102
Query: 195 NEGKR-PIYVDGRPIIASNKYKLNHNSIIE 223
+ G YV+ P N + I+
Sbjct: 103 DVGSLNGTYVNREPR---NAQVMQTGDEIQ 129
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 38.0 bits (88), Expect = 7e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 137 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 194
V RG R+L+ + GR D D+ L+ VSRR A R N +F +
Sbjct: 60 VKRGPNAGSRFLLDQAITSAGRHP-----DSDIFLDDVT--VSRRHAEFR-LENNEFNVV 111
Query: 195 NEGKR-PIYVDGRPIIASNKYKLNHNSIIE 223
+ G YV+ P+ + L + ++
Sbjct: 112 DVGSLNGTYVNREPV---DSAVLANGDEVQ 138
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 143 VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD----FFIANEGK 198
+ Y +K +G++ A+ DI LS + R + + +
Sbjct: 24 LLYYIKDGITRVGQADAERRQDIVLSGAH----IKEEHCIFRSERSNSGEVIVTLEPCER 79
Query: 199 RPIYVDGRPIIASNKYKLNHNSII 222
YV+G+ + S +L + I
Sbjct: 80 SETYVNGKRV--SQPVQLRSGNRI 101
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 35.8 bits (83), Expect = 0.002
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 137 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 194
V RG R+L+ + GR D D+ L+ VSRR A R G+F +
Sbjct: 16 VKRGPNAGSRFLLDQPTTSAGRHP-----DSDIFLDDVT--VSRRHAEFR-LEGGEFQVV 67
Query: 195 NEGKRP-IYVDGRPIIASNKYKLNHNSIIE 223
+ G YV+ P+ + L + ++
Sbjct: 68 DVGSLNGTYVNREPV---DSAVLANGDEVQ 94
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 35.5 bits (82), Expect = 0.003
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 144 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACI-RMRNNGDFFIANEGKRPIY 202
L++ R+ T+GR DLS VS I +G + +
Sbjct: 18 HVLLRKREWTIGRRR-----GCDLSFPSNKL-VSGDHCRIVVDEKSGQVTLEDTSTSGTV 71
Query: 203 VDGRPIIASNKYKLNHNSII 222
++ ++ L +I
Sbjct: 72 INKLKVVKKQTCPLQTGDVI 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.004
Identities = 41/253 (16%), Positives = 73/253 (28%), Gaps = 64/253 (25%)
Query: 3 NEIRE--LNLNRTNDIKAVH---------------RGLKFSCKFTFNECLQRWFTL--LY 43
++R+ L L ++ + K CK F W L
Sbjct: 138 LKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCN 193
Query: 44 DP-----NLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFSLL 98
P L +L Q N H+ K + + EL +KS Y LL
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLL 248
Query: 99 IL----EKKELKKVEEEMK-----NWAVIVDHVTGSNT--PELDKQTYAVLRGRAVRYLM 147
+L K K + + D ++ + T LD + + L+
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 148 KFRDVTLGRSTAD---HSVDID---LSL------EGPA-WKVSRRQACIRMRNNGDFFIA 194
K+ L D + + LS+ +G A W + C ++ + +
Sbjct: 309 KY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 195 N---EGKRPIYVD 204
R ++
Sbjct: 365 VLEPAEYRKMFDR 377
Score = 35.6 bits (81), Expect = 0.011
Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 77/249 (30%)
Query: 9 NLNRTNDIKAVHRGLKFSCKFTFNECLQRWFTLL--YDPNLSRLAVQGMQNLHPEVVHNI 66
N+ A SCK LL ++ + H + H+
Sbjct: 252 NVQNAKAWNA----FNLSCK-----------ILLTTRFKQVTD-FLSAATTTHISLDHHS 295
Query: 67 QAKALFSNDE-EELLGSIKSPGYTLRFIGFSLLILEKKELKKVE--------EEMKNWAV 117
+ DE + LL L+++ L +E+ E +++
Sbjct: 296 MT---LTPDEVKSLL---------LKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA 342
Query: 118 IVDHVTGSNTPELD---KQTYAVLRGRAVRYLMK----FRDVTLGRSTADHSVDIDLSLE 170
D+ N +L + + VL R + F S I L
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----------SAHIPTILL 392
Query: 171 GPAW-------------KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLN 217
W K+ + + I + IY++ + + N+Y L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-----IYLELKVKL-ENEYAL- 445
Query: 218 HNSIIERFD 226
H SI++ ++
Sbjct: 446 HRSIVDHYN 454
Score = 35.2 bits (80), Expect = 0.018
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 72/230 (31%)
Query: 69 KALFSNDE-EELLGSIKSPGYTLRFIGFSLLILEKKELKK--VEEEM-KNWAVIVDHV-T 123
K++ S +E + ++ S K + F L+ +++E+ + VEE + N+ ++ + T
Sbjct: 43 KSILSKEEIDHIIMS-KDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 124 GSNTPELDKQTYA-----------------VLRGRAV----RYLMKFRD---VTL----- 154
P + + Y V R + + L++ R V +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 155 -GRST------ADHSVDIDLSLEGPAW----KVSRRQACIRMRNN------GDFFIANEG 197
G++ + V + W + + + M ++ ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 198 KRPIYVDG-------RPIIASNKYK--------LNHNSIIERFDRGNWNC 232
I + R ++ S Y+ + + F+ C
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---C 266
Score = 32.5 bits (73), Expect = 0.12
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 36/144 (25%)
Query: 34 CLQRW---FTL-LYDPNLS-RLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGY 88
+++ T+ + L ++ ++ LH +V + F +D+ L Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD---LIPPYLDQY 472
Query: 89 TLRFIGFSLLILEKKEL---------------KKVEEEMKNWAVIVDHVTGSNTPEL-DK 132
IG L +E E +K+ + W + +GS L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-----NASGSILNTLQQL 527
Query: 133 QTYA-------VLRGRAVRYLMKF 149
+ Y R V ++ F
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 60/168 (35%)
Query: 40 TLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEE-----ELLGSIKSPGYTLRFIG 94
T + S+L Q + L PE F+ D+E EL+G +F+G
Sbjct: 24 TASF-FIASQLQEQFNKIL-PEPTEG------FAADDEPTTPAELVG---------KFLG 66
Query: 95 FSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTL 154
+ ++E ++ + ++ + + + Y L G D+
Sbjct: 67 YVSSLVEPSKVGQFDQVLN---LCLTEFE---------NCY--LEG---------NDI-- 101
Query: 155 GRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANE-GKRPI 201
H++ L E + + + I+ ++ A KRP
Sbjct: 102 ------HALAAKLLQENDT-TLVKTKELIK-----NYITARIMAKRPF 137
Score = 34.3 bits (78), Expect = 0.033
Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 57/224 (25%)
Query: 31 FNECLQRWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSN--DEEELL-GSIKSPG 87
F E L+ + Y + L + L + + A+ +F+ + E L +P
Sbjct: 170 FEE-LRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 88 --YTLRFIGFSL-LI---------LEKKELKKVEEEMKNW---------AVIVDHVT-GS 125
Y L I S LI + K L E++++ ++ +
Sbjct: 228 KDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 126 NT-PELDKQTYAVLR-----GRAVRYLMKFRDVTLGRSTADHSVDID-------LSLEGP 172
++ + G VR + + +L S + S++ + LS+
Sbjct: 287 DSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN- 343
Query: 173 AWKVSRRQ--ACIRMRN-----NGDFFIA--NEGKRPIYVDGRP 207
+++ Q + N I+ N G + + V G P
Sbjct: 344 ---LTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPP 383
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 34.9 bits (80), Expect = 0.005
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 160 DHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHN 219
+S DI L G + I + + G + + +V+G + S+ +L+H
Sbjct: 55 ANSQDIQLCGMG----ILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSV--SSPIQLHHG 108
Query: 220 SII 222
I
Sbjct: 109 DRI 111
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 34.2 bits (79), Expect = 0.007
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 144 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 202
Y ++ +GR D L VSRR IR + +A+
Sbjct: 17 TYQLREGSNIIGRGQ-----DAQFRLPDTG--VSRRHLEIR-WDGQVALLADLNSTNGTT 68
Query: 203 VDGRPI 208
V+ P+
Sbjct: 69 VNNAPV 74
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 33.3 bits (76), Expect = 0.022
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 140 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-NNGDFFIANEGK 198
G + + +GRS D ++L P+ +S++ A I + N + + G
Sbjct: 35 GPERDFPLYLGKNVVGRSP-----DCSVALPFPS--ISKQHAVIEISAWNKAPILQDCGS 87
Query: 199 R-PIYVDGRPII--ASNKYKLNHNSII 222
+ P + ++L +I
Sbjct: 88 LNGTQIVKPPRVLPPGVSHRLRDQELI 114
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 32.3 bits (74), Expect = 0.12
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 37 RWFTLLYDPNLSRLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGFS 96
WF + L + +V + E+ ++ +++S
Sbjct: 260 PWFNVNLPDYLRPMEEVQGSYADSRIVSKLGE--AMGFSEDYIVEALRSDENN-EVKEAY 316
Query: 97 LLILEKKELKKVEEEMKN 114
L+ E + +++ E +
Sbjct: 317 NLLHENQVIQEKLEHHHH 334
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 29.3 bits (66), Expect = 0.44
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 162 SVDIDLSLEGPAW---KVSRRQACIRMRNNGDFFIANEGKRPIYV 203
S ++ L W + R + + ++GDF + + YV
Sbjct: 6 SGEVQKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQEYV 50
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
{Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A
1ons_A 1izz_A
Length = 291
Score = 28.8 bits (64), Expect = 1.4
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 72 FSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKK--VEEEMKNWA--VIVDH--VTGS 125
F + ++ I L + +ELKK + + V D +TG
Sbjct: 209 FPDAADKQTPEIGYMPGHLTW------YFG-EELKKMGMNIINDDITGRVHKDRKLLTGD 261
Query: 126 N 126
+
Sbjct: 262 S 262
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 28.6 bits (64), Expect = 1.8
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 37 RWFTLLYDPNLS-RLAVQGMQNLHPEVVHNIQAKALFSNDEEELLGSIKSPGYTLRFIGF 95
WF L + E + + K F EEE+L + + +
Sbjct: 268 EWFKQDLPKYLFPEDPSYSSTMIDDEALKEVCEK--FECSEEEVLSCLYNRNHQDPLAVA 325
Query: 96 SLLILEKKELKKVEEEM 112
LI++ + + ++
Sbjct: 326 YHLIIDNRRIMNEAKDF 342
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein,
hydrolase, protease, stress response; 2.03A
{Saccharomyces cerevisiae} PDB: 3mii_A*
Length = 244
Score = 28.1 bits (62), Expect = 2.0
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 15/63 (23%)
Query: 72 FSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKK----VEEEMKNWA--VIVDH--VT 123
F + E LG +E + K + W I D VT
Sbjct: 165 FPLEGEIALGVDDILRSRKLT------TVE-RVANKNGAKYLAPIHPWDDYSITDGKLVT 217
Query: 124 GSN 126
G N
Sbjct: 218 GVN 220
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 152 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD----FFIANEGKRP------I 201
T+GRS D+ ++ VSR A + +++ D + I + + +
Sbjct: 32 YTIGRSP-----RADIRIKSQF--VSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL 84
Query: 202 YVDGRPIIASNKYKLNHNSIIE 223
++G+ + ++ + I
Sbjct: 85 MINGKKV---QEHIIQTGDEIV 103
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown
function; 1.80A {Saccharomyces cerevisiae} SCOP:
c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Length = 243
Score = 27.7 bits (61), Expect = 2.9
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 15/63 (23%)
Query: 72 FSNDEEELLGSIKSPGYTLRFIGFSLLILEKKELKK----VEEEMKNWA--VIVDH--VT 123
F++ E +LG +E KK + W I D VT
Sbjct: 165 FTDVGETILGVDSILKAKNLA------TVE-DVAKKYGAKYLAPVGPWDDYSITDGRLVT 217
Query: 124 GSN 126
G N
Sbjct: 218 GVN 220
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
Q HPEV H + +F N
Sbjct: 175 ATQ-FHPEVEHTQYGRDIFRN 194
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 27.4 bits (61), Expect = 3.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 182 CIRMRNNGDFFIANEGKR-PIYVDGRPII 209
+ ++ N F + G + PIY D R +
Sbjct: 38 AVFLQPNDPFTWS-SGMKSPIYCDNRLTL 65
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 27.1 bits (61), Expect = 4.2
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G Q HPEV K + N
Sbjct: 185 GAQ-FHPEVGLTENGKVILKN 204
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 27.6 bits (62), Expect = 4.5
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G Q HPEV K + N
Sbjct: 190 GAQ-FHPEVGLTENGKVILKN 209
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 27.2 bits (61), Expect = 5.0
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G+Q HPEV ++ + +F N
Sbjct: 205 GVQ-YHPEVYESLDGELMFYN 224
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 27.0 bits (61), Expect = 5.6
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G+Q HPEV H Q +
Sbjct: 177 GVQ-FHPEVTHTRQGMRMLER 196
>3bhw_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.50A
{Magnetospirillum magneticum}
Length = 209
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 82 SIKSPGYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSN-----TPELDKQTYA 136
S+ P Y G SL + E + + + E + N +P K+ +
Sbjct: 2 SLAEPRYKADIGGGSLKLPESRIIAGLLLEGVTEDQWRHAIEVENVLQRRSPGTAKRQSS 61
Query: 137 VLRGR 141
++R R
Sbjct: 62 LMRNR 66
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 27.1 bits (61), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G+Q HPEV H Q + ++
Sbjct: 180 GLQ-FHPEVTHTPQGHRILAH 199
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 26.7 bits (60), Expect = 6.9
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 54 GMQNLHPEVVHNIQAKALFSN 74
G+Q HPEV H + + N
Sbjct: 160 GVQ-FHPEVAHTPKGMQILEN 179
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 26.2 bits (58), Expect = 9.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 182 CIRMRNNGDFFIANEGKR-PIYVDGRPII 209
+ ++ F A G + PIY D R +
Sbjct: 18 AVYLKPEDPFTWA-SGIKSPIYTDNRVTL 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,674,216
Number of extensions: 216077
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 42
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)