RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10574
         (232 letters)



>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 139 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 198
                  L    +VT+GR      V   L  +     +SR    ++    G + I +   
Sbjct: 13  MSAGWLLLEDGCEVTVGRG---FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKS 69

Query: 199 R-PIYVDGRPIIASNKYKLNHNSIIE 223
              ++++   +     Y ++    I+
Sbjct: 70  LNGVWLNRARLEPLRVYSIHQGDYIQ 95


>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 118

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 8/86 (9%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 138 LRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG 197
             G A+        + +GR    +    +++++     +S +   I   +          
Sbjct: 22  REGDALD-YKPGSTIRVGRIVRGN----EIAIKDAG--ISTKHLRIESDSGNWVIQDLGS 74

Query: 198 KRPIYVDGRPIIASNKYKLNHNSIIE 223
                ++   +       L    +I+
Sbjct: 75  SNGTLLNSNALDPETSVNLGDGDVIK 100


>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 122

 Score = 29.7 bits (66), Expect = 0.13
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 152 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR--PIYVDGRPII 209
           V LGR +       DL+L+     VS + A I   +    +   +        V+   I 
Sbjct: 32  VKLGRVS-----PSDLALKDSE--VSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHSIS 84

Query: 210 ASNKYKLNHNSIIE 223
             +       + +E
Sbjct: 85  HPDLGSRKWGNPVE 98


>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 89

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 120 DHVTGSNTPELDKQTYAVL------RGRAVRYLMKFRDVTLG 155
           DHV G++ P LD ++ A L      +G    +L+  RD+ L 
Sbjct: 46  DHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLA 87


>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
           GABARAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 117 VIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKF 149
           VIV+    +   +LDK+ Y V     V      
Sbjct: 33  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFL 65


>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 104

 Score = 25.3 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 168 SLEGPAW---KVSRRQACIRMRNNGDFFIANEGKRP 200
            L G  W   K+SRR+A   ++ NGDF +      P
Sbjct: 3   QLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTP 38


>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic
           flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
          Length = 399

 Score = 25.1 bits (54), Expect = 8.2
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 87  GYTLRFIGFSLLILEKKELKKVEEEMKNWAVIVDHVTGSNTP 128
              +  + F+ L     EL+ ++  +++W     H++   TP
Sbjct: 360 SNEVYSLVFARL---VGELRIIKSVLQSWKNWDSHLSSICTP 398


>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 138

 Score = 24.5 bits (52), Expect = 8.2
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 32 NECLQRWFTLLYDPNLSRLAVQGMQ--NLHPEVVHNIQAKALFSND 75
          N+  +  + L YD   + L V  ++    + +   +   +   +N 
Sbjct: 10 NQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANR 55


>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 205

 Score = 24.9 bits (53), Expect = 8.6
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)

Query: 52  VQGMQNLHPEVVHNIQAKALFSN 74
             G+Q  HPEV H  Q   +   
Sbjct: 173 FYGVQ-FHPEVTHTRQGMRMLER 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,886
Number of extensions: 42001
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 16
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)