Query psy10576
Match_columns 151
No_of_seqs 108 out of 404
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:56:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1860|consensus 100.0 1.2E-43 2.5E-48 317.4 14.6 147 4-151 180-328 (927)
2 COG5079 SAC3 Nuclear protein e 100.0 2.8E-36 6E-41 257.0 12.7 138 8-147 150-288 (646)
3 PF03399 SAC3_GANP: SAC3/GANP/ 100.0 4.2E-36 9E-41 231.9 11.9 126 10-151 26-155 (204)
4 KOG1861|consensus 100.0 1E-29 2.2E-34 215.3 8.3 119 13-151 321-443 (540)
5 KOG3151|consensus 92.6 0.5 1.1E-05 38.1 6.6 97 39-150 55-156 (260)
6 PF10075 PCI_Csn8: COP9 signal 89.0 0.81 1.8E-05 33.3 4.4 53 98-150 3-60 (143)
7 PF08771 Rapamycin_bind: Rapam 30.4 1E+02 0.0022 21.2 4.0 29 74-103 30-58 (100)
8 PF14938 SNAP: Soluble NSF att 30.4 1.7E+02 0.0038 23.3 5.9 35 115-149 218-253 (282)
9 PF09102 Exotox-A_target: Exot 28.3 28 0.0006 25.2 0.8 85 51-148 7-106 (143)
10 PF12399 BCA_ABC_TP_C: Branche 28.1 35 0.00076 17.4 1.0 14 122-135 7-20 (23)
11 PF14461 Prok-E2_B: Prokaryoti 26.3 89 0.0019 22.4 3.2 37 71-107 90-126 (133)
12 COG4930 Predicted ATP-dependen 25.1 1.1E+02 0.0024 27.3 4.0 24 21-44 22-46 (683)
13 PHA02620 VP3; Provisional 24.6 1.3E+02 0.0027 25.7 4.1 65 11-88 157-221 (353)
14 KOG3562|consensus 22.6 44 0.00095 26.9 1.0 19 10-28 35-53 (277)
15 PF06675 DUF1177: Protein of u 21.4 1.6E+02 0.0035 24.2 4.0 27 40-66 227-253 (276)
16 smart00188 IL10 Interleukin-10 20.4 3.6E+02 0.0078 19.9 7.3 85 20-109 23-108 (137)
No 1
>KOG1860|consensus
Probab=100.00 E-value=1.2e-43 Score=317.37 Aligned_cols=147 Identities=38% Similarity=0.692 Sum_probs=141.7
Q ss_pred cccCCC-ChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHH
Q psy10576 4 IELPDI-NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLI 82 (151)
Q Consensus 4 ~~~~~~-~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~ 82 (151)
++.... ++.++|+|||||+||||||+|+||+.+..||.++|+|+||||++.|+||++| +.||+++|++||++|+.+|.
T Consensus 180 v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~~Av~llE~i~RfhI~~~h~Lce~~-~~Fda~~nlEQL~K~l~sL~ 258 (927)
T KOG1860|consen 180 VLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQEAVELLERIARFHILFRHRLCEEP-EQFDAQQNLEQLQKCLQSLG 258 (927)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccCc-ccCChhHHHHHHHHHHHHHH
Confidence 344444 8999999999999999999999999999999999999999999999999998 79999999999999999999
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576 83 HMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ 151 (151)
Q Consensus 83 ~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk 151 (151)
++|+|+++.|++||||+||+||++|++|+++++...++.||+++++++.|++|+.++.|++ |||++|||
T Consensus 259 elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~~~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r 328 (927)
T KOG1860|consen 259 ELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQVVRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFR 328 (927)
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhcCCchHHHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999985
No 2
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-36 Score=257.04 Aligned_cols=138 Identities=30% Similarity=0.429 Sum_probs=132.9
Q ss_pred CCChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy10576 8 DINVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDD 87 (151)
Q Consensus 8 ~~~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~ 87 (151)
+.++.+.|.|+|||+||||||+|+||..+.+||+|+|++|||||++.|.|++.| .|+.++++|||.+.|.+|.++|++
T Consensus 150 ~d~l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~EriaRfhIl~lh~L~~~p--~Fs~qqeleQL~ksL~sL~elYdd 227 (646)
T COG5079 150 GDQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHP--HFSKQQELEQLKKSLASLIELYDD 227 (646)
T ss_pred CcchHHHHHHHHhhhHHHHhhceeecccCchHHHHHHHHHHHHHHHHHHHhcCc--cccHHhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999997 899999999999999999999999
Q ss_pred HhhCCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcc
Q psy10576 88 LHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLY 147 (151)
Q Consensus 88 ~~~~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~ 147 (151)
.++.+..||||+||+||.||.+|+||+....++.||.+++..+.|+.|+.+.+-.+ |||.
T Consensus 228 ~r~~~~~cpneaEFraYaiL~slgDp~yv~~iq~wp~~if~d~~vq~alkl~~laq~nn~r 288 (646)
T COG5079 228 GRAGKKECPNEAEFRAYAILASLGDPRYVAGIQGWPGGIFCDLPVQIALKLMQLAQSNNFR 288 (646)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHhCCchhhhccccCCccccccchHHHHHHHHHHhhccCee
Confidence 99988999999999999999999999999999999999999999999999999888 8764
No 3
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=100.00 E-value=4.2e-36 Score=231.94 Aligned_cols=126 Identities=34% Similarity=0.554 Sum_probs=110.8
Q ss_pred ChhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHh
Q psy10576 10 NVSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLH 89 (151)
Q Consensus 10 ~~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~ 89 (151)
++.++|+|||||+||||||+++||+.+++++.|||.+|||+|.+ .|.+|+++|+++|+++|++.+
T Consensus 26 ~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~---------------~d~~qf~~c~~~L~~lY~~~~ 90 (204)
T PF03399_consen 26 PFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES---------------GDLEQFNQCLSQLKELYDDLR 90 (204)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc---------------CCHHHHHHHHHHHHHHHHhhc
Confidence 67789999999999999999999999999999999999999998 469999999999999999974
Q ss_pred hCCCCCCCHHHHHHHHHHHhC-CC--hhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576 90 AQGLVCPNEPEFRAYEILLKL-NR--GDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ 151 (151)
Q Consensus 90 ~~g~~~~ne~EF~aY~iL~~l-~~--~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk 151 (151)
.+.+++|++||.||+||+++ ++ +++...+..+|++++++|.|++|++|.+|+. |||++||+
T Consensus 91 -~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~ 155 (204)
T PF03399_consen 91 -DLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFR 155 (204)
T ss_dssp -HT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHH
T ss_pred -cCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46678999999999999999 45 5888888899999999999999999999999 99999985
No 4
>KOG1861|consensus
Probab=99.96 E-value=1e-29 Score=215.30 Aligned_cols=119 Identities=26% Similarity=0.383 Sum_probs=109.3
Q ss_pred hhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy10576 13 QWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQG 92 (151)
Q Consensus 13 ~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g 92 (151)
.-|.|++||++|||||||||+|.+++||+|||++||+.+.. -|.++++||+++|+.+|. .|
T Consensus 321 ~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEk---------------GD~~EfNQCQtQLk~LY~----eg 381 (540)
T KOG1861|consen 321 ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEK---------------GDLEEFNQCQTQLKALYS----EG 381 (540)
T ss_pred ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhc---------------CCHHHHHHHHHHHHHHHc----cC
Confidence 57999999999999999999999999999999999999854 478999999999999996 56
Q ss_pred CCCCCHHHHHHHHHHHhCC---ChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576 93 LVCPNEPEFRAYEILLKLN---RGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLSQ 151 (151)
Q Consensus 93 ~~~~ne~EF~aY~iL~~l~---~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk 151 (151)
+++. -.||.||+|||.+- .++++..+..+.++++++|.|.+||+|+.|+. |||++||+
T Consensus 382 ipg~-~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hAL~vR~A~~~GNY~kFFr 443 (540)
T KOG1861|consen 382 IPGA-YLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHALEVRSAVTLGNYHKFFR 443 (540)
T ss_pred CCCc-hhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHHHHHHHHHHhccHHHHHH
Confidence 6655 99999999999973 46888888899999999999999999999999 99999996
No 5
>KOG3151|consensus
Probab=92.64 E-value=0.5 Score=38.11 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhCCCh---hH
Q psy10576 39 TANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRG---DI 115 (151)
Q Consensus 39 ~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~---~~ 115 (151)
|=+|||..|=..|.. -|.+.|..=+.+|+-.|-|..+.=..++++.-+.+..+|+.+... ++
T Consensus 55 aR~ilEi~vl~SI~t---------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNRiaeF 119 (260)
T KOG3151|consen 55 ARDILEIGVLLSILT---------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNRIAEF 119 (260)
T ss_pred HHHHHHHHHHHHHHh---------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhccHHHH
Confidence 457899888666654 255677888889999998877643457888999999999988643 56
Q ss_pred HHHHHccChHhhcC-HhHHHHHHHHHHHh-cCccccc
Q psy10576 116 IWEFQQLSPHLQTA-PEILFSLRVFSAFN-NNLYSLS 150 (151)
Q Consensus 116 l~~l~~l~~~~~~~-~~v~~Al~i~~a~~-~Ny~rfF 150 (151)
-..+..+|.++..+ |.|+.++++=..++ |-|-++|
T Consensus 120 HteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~ 156 (260)
T KOG3151|consen 120 HTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVL 156 (260)
T ss_pred HHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHH
Confidence 66788899998877 99999999999999 9887664
No 6
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=88.97 E-value=0.81 Score=33.31 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCC---ChhHHHHHHccChHhhcC-HhHHHHHHHHHHHh-cCccccc
Q psy10576 98 EPEFRAYEILLKLN---RGDIIWEFQQLSPHLQTA-PEILFSLRVFSAFN-NNLYSLS 150 (151)
Q Consensus 98 e~EF~aY~iL~~l~---~~~~l~~l~~l~~~~~~~-~~v~~Al~i~~a~~-~Ny~rfF 150 (151)
.+++.+-.++..|- -.++-..+..+|+++.++ |.++....+..++. ++|..|+
T Consensus 3 ~~~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~ 60 (143)
T PF10075_consen 3 NPEIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFW 60 (143)
T ss_dssp -HHHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHH
T ss_pred chhHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence 56677766665542 246665666899999985 99999999999999 9999886
No 7
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=30.42 E-value=1e+02 Score=21.17 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Q psy10576 74 LNNCLQSLIHMYDDLHAQGLVCPNEPEFRA 103 (151)
Q Consensus 74 l~~cl~~L~~lY~~~~~~g~~~~ne~EF~a 103 (151)
....+..|..+++.+.+ |..++.|..|..
T Consensus 30 ~~~m~~~L~pLh~~l~k-~PeT~~E~~F~~ 58 (100)
T PF08771_consen 30 VEKMFKILEPLHEMLEK-GPETLREVSFAQ 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHH-S-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 45566666667777775 667888988876
No 8
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=30.36 E-value=1.7e+02 Score=23.29 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHccChHhhcCHhHHHHHHHHHHHh-cCcccc
Q psy10576 115 IIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSL 149 (151)
Q Consensus 115 ~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rf 149 (151)
.+......-|.+..+...+++-++..|+. ||--.|
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 34445566677888999999999999999 886543
No 9
>PF09102 Exotox-A_target: Exotoxin A, targeting; InterPro: IPR015186 This domain, found in Pseudomonas aeruginosa exotoxin A, is responsible for transmembrane targeting of the toxin, as well as transmembrane translocation of the catalytic domain into the cytoplasmic compartment. A furin cleavage site is present within the domain: cleavage generates a 37 kDa carboxy-terminal fragment, which includes the enzymatic domain, which is then is translocated into the cytoplasm. It adopts a helical structure, with six alpha-helices forming a bundle []. ; PDB: 1IKP_A 1IKQ_A 2Q5T_A 3Q9O_A.
Probab=28.32 E-value=28 Score=25.19 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHhhhhhcCCCCcccc---hhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh---------CC--ChhHH
Q psy10576 51 ILCFDRLCGEDASIFD---EKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILLK---------LN--RGDII 116 (151)
Q Consensus 51 i~s~~~l~~~~~~~fd---~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~---------l~--~~~~l 116 (151)
.++.|+.|+.|-+.|- ..-+++++.+|-.....+- +-|.+-+|+.+ ++ .+++.
T Consensus 7 AL~AH~~C~~PLET~~R~RkPR~~~~~~~C~Y~~Q~iV-------------sL~~A~Ri~~~~~D~V~~~~L~~~~~~va 73 (143)
T PF09102_consen 7 ALAAHRVCGVPLETLARSRKPRDWTDDLSCAYQAQNIV-------------SLFVATRILFSHLDSVFTLNLDEQEPEVA 73 (143)
T ss_dssp HHHHHHHHT--HHHHC-SSS-SS-HHHHHCHHHHHHHH-------------HHHHHCT--GGGHHHHHHCHHHCTTCCHH
T ss_pred HHHHhhhhCCcHHHHhhccCCCCCchhhhccchHHHHH-------------HHHHHHHHHHHHHHHHHHHhccCCCcchh
Confidence 5677888888755443 2246788888843333221 12333333333 22 23566
Q ss_pred HHHHccChHhhcCHh-HHHHHHHHHHHhcCccc
Q psy10576 117 WEFQQLSPHLQTAPE-ILFSLRVFSAFNNNLYS 148 (151)
Q Consensus 117 ~~l~~l~~~~~~~~~-v~~Al~i~~a~~~Ny~r 148 (151)
.++..+...+.++|. ++.++.+.++..+.||+
T Consensus 74 erl~DL~~~~~~~P~~~~~~LT~A~~~~~~~V~ 106 (143)
T PF09102_consen 74 ERLSDLRRINENNPGMVTQVLTVARQIYNDYVT 106 (143)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 666666666776665 47788887777666665
No 10
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=28.09 E-value=35 Score=17.35 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=10.9
Q ss_pred cChHhhcCHhHHHH
Q psy10576 122 LSPHLQTAPEILFS 135 (151)
Q Consensus 122 l~~~~~~~~~v~~A 135 (151)
-|.+++.+|.|+-|
T Consensus 7 ~p~~i~~n~~V~~a 20 (23)
T PF12399_consen 7 TPEEIRANPEVREA 20 (23)
T ss_pred CHHHHhcCHHHHHh
Confidence 36778899998766
No 11
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=26.30 E-value=89 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy10576 71 TENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEIL 107 (151)
Q Consensus 71 ~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL 107 (151)
.+.+.+|+.+...+-++.-+.....+...||.||+-.
T Consensus 90 ~~~~~~~l~~a~~lL~~~~~~~~~~d~~~Ef~sYW~~ 126 (133)
T PF14461_consen 90 EGIIADCLERAIRLLEDGLSGDNEDDFADEFQSYWNR 126 (133)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Confidence 4566777776666555322111133456899999864
No 12
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=1.1e+02 Score=27.29 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhccCCc-chHHHHH
Q psy10576 21 RLRGIRKDIVQQQLCSV-NTANILE 44 (151)
Q Consensus 21 R~RaIRqDl~iQ~~~~~-~~i~vlE 44 (151)
+-|+||+|+|-|=-.+. -.+.++|
T Consensus 22 ~grvVrKdLtk~Lk~g~nvPvYVlE 46 (683)
T COG4930 22 GGRVVRKDLTKELKLGKNVPVYVLE 46 (683)
T ss_pred CCceehhHHHHHHhhccCCcHHHHH
Confidence 34899999998855554 5688888
No 13
>PHA02620 VP3; Provisional
Probab=24.57 E-value=1.3e+02 Score=25.74 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred hhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHH
Q psy10576 11 VSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDL 88 (151)
Q Consensus 11 ~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~ 88 (151)
|..+=.++||.+|.-|-.++.|.+.-..+-.+++..+||.=-+..-+.+.|. +....|.+-|.++
T Consensus 157 f~~VGq~~W~~lr~~~~~i~~~~l~~rt~~~~~D~LAR~~EnaRW~V~~~p~-------------~~Y~~L~~YY~~L 221 (353)
T PHA02620 157 FSAISQAFWHLVRDDLPRLTSQEIERRTQRFFRDSLARFLEETTWTIVNAPI-------------NLYNSIQDYYSAL 221 (353)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhceEEEecCcH-------------HHHHHHHHHHHhC
Confidence 5566689999998888888888877777777889999997555555555553 2356666677755
No 14
>KOG3562|consensus
Probab=22.60 E-value=44 Score=26.94 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=15.5
Q ss_pred ChhhhhHHHHhhhhhhhhh
Q psy10576 10 NVSQWYDFLWDRLRGIRKD 28 (151)
Q Consensus 10 ~~~~~y~Fi~DR~RaIRqD 28 (151)
.++++|.||-||+==-|+.
T Consensus 35 PLseIYkfImDrFPfYRkN 53 (277)
T KOG3562|consen 35 PLSEIYKFIMDRFPFYRKN 53 (277)
T ss_pred cHHHHHHHHHhhCchhhhc
Confidence 3899999999999766654
No 15
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=21.36 E-value=1.6e+02 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCcccc
Q psy10576 40 ANILEQCARFHILCFDRLCGEDASIFD 66 (151)
Q Consensus 40 i~vlE~~~Rf~i~s~~~l~~~~~~~fd 66 (151)
..-+|..+||.|..+-......+.-||
T Consensus 227 ~~di~~A~RF~iEvAK~fg~g~c~Fyd 253 (276)
T PF06675_consen 227 EVDIEHAVRFCIEVAKEFGRGKCSFYD 253 (276)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceeeC
Confidence 355799999999998888777665565
No 16
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.41 E-value=3.6e+02 Score=19.87 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=45.6
Q ss_pred hhhhhhhhhh-hhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCH
Q psy10576 20 DRLRGIRKDI-VQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNE 98 (151)
Q Consensus 20 DR~RaIRqDl-~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne 98 (151)
|.+-.|+=+= .++++.+.....++..++|||+.-----..++ +-+.+-....|++.+.+ ++.+++.-.-..+-|
T Consensus 23 D~~~~vll~~~ll~~~k~~~gC~~l~ell~FYLd~V~p~a~~~--~~~~k~~i~Sl~~~f~~---lk~~l~~C~~~~~Ce 97 (137)
T smart00188 23 DQLDNILLTESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENH--GPDIKEHVNSLGEKLKT---LRLRLRRCHRFLPCE 97 (137)
T ss_pred chHhhHhhhHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHHH---HHHHHHHCccccCcc
Confidence 4444443222 35667788888999999999986533222221 12223344455555544 566666532112235
Q ss_pred HHHHHHHHHHh
Q psy10576 99 PEFRAYEILLK 109 (151)
Q Consensus 99 ~EF~aY~iL~~ 109 (151)
..+.++.-+.+
T Consensus 98 ~~~~a~~qi~~ 108 (137)
T smart00188 98 NKSKAVEQVKN 108 (137)
T ss_pred chhHHHHHHHH
Confidence 66666644433
Done!