Query psy10576
Match_columns 151
No_of_seqs 108 out of 404
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:57:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 1.1E-46 3.7E-51 309.8 13.4 140 11-151 29-184 (316)
2 4b0z_A RPN12, 26S proteasome r 99.7 2.4E-17 8.3E-22 129.6 8.6 121 13-151 21-155 (229)
3 4b4t_T 26S proteasome regulato 99.7 3.4E-17 1.2E-21 132.0 3.5 124 13-151 18-162 (274)
4 1rz4_A Eukaryotic translation 93.1 0.55 1.9E-05 36.2 8.7 98 31-150 15-118 (226)
5 3e1k_B Lactose regulatory prot 39.7 11 0.00039 18.1 0.9 14 7-20 6-19 (22)
6 3bts_E Regulatory protein GAL4 34.4 15 0.00052 18.4 1.0 13 8-20 5-17 (26)
7 2dii_A TFIIH basal transcripti 30.5 58 0.002 19.8 3.4 24 81-106 29-52 (61)
8 1gp8_A Protein (scaffolding pr 28.5 53 0.0018 18.2 2.7 27 18-44 6-33 (40)
9 2au5_A Conserved domain protei 27.1 1.5E+02 0.0052 20.3 5.4 33 63-99 77-109 (139)
10 3ggz_E Vacuolar protein-sortin 20.9 35 0.0012 17.7 0.9 11 16-26 18-28 (29)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=309.83 Aligned_cols=140 Identities=29% Similarity=0.469 Sum_probs=134.2
Q ss_pred hhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhh
Q psy10576 11 VSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHA 90 (151)
Q Consensus 11 ~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~ 90 (151)
+.++|+||||||||||||+|+|++.+++||+|||+||||||+|.|+||+.+. +||+++|.+|+++||++|+++|++.++
T Consensus 29 ~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~-~f~~~~~~eQl~~~L~sL~~lY~d~~~ 107 (316)
T 3t5v_A 29 LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV-EFSLQQELEQLHKSLITLSEIYDDVRS 107 (316)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC-ccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999998764 899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh----------------cCcccccC
Q psy10576 91 QGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN----------------NNLYSLSQ 151 (151)
Q Consensus 91 ~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~----------------~Ny~rfFk 151 (151)
.|..+|||+||+||+||++++++++...+..||++++++|.||+|+++.+|+. |||+||||
T Consensus 108 ~~~~~~ne~EF~aY~lL~~l~~~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFr 184 (316)
T 3t5v_A 108 SGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQ 184 (316)
T ss_dssp TTCCCTTHHHHHHHHHHHSTTCTHHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhccchHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence 89899999999999999999999999999999999999999999999999985 68999996
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.71 E-value=2.4e-17 Score=129.55 Aligned_cols=121 Identities=12% Similarity=0.174 Sum_probs=101.6
Q ss_pred hhhHHHHhhhhhhhhhhhhhccCC--------cchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHH
Q psy10576 13 QWYDFLWDRLRGIRKDIVQQQLCS--------VNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHM 84 (151)
Q Consensus 13 ~~y~Fi~DR~RaIRqDl~iQ~~~~--------~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~l 84 (151)
.-|+.+.+.+..|++||+.|++.. ..|.+|||..+|..|.. -|.+++++|+++|+.+
T Consensus 21 ~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~---------------~D~~~F~~~~~qLk~~ 85 (229)
T 4b0z_A 21 KDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQT---------------CDIESFARYASQVIPF 85 (229)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHH
Confidence 357899999999999999999842 35789999999999864 4789999999999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHhCC--C-hhHHHHHHccChH--hhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576 85 YDDLHAQGLVCPNEPEFRAYEILLKLN--R-GDIIWEFQQLSPH--LQTAPEILFSLRVFSAFN-NNLYSLSQ 151 (151)
Q Consensus 85 Y~~~~~~g~~~~ne~EF~aY~iL~~l~--~-~~~l~~l~~l~~~--~~~~~~v~~Al~i~~a~~-~Ny~rfFk 151 (151)
|.+. ...++++.||.||+||+.+. + +++...+..+|++ +.++|.|++|++|.+|++ |||.+||+
T Consensus 86 Y~~~---~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~ 155 (229)
T 4b0z_A 86 YHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVAS 155 (229)
T ss_dssp HSSC---CCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcc---CCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9852 23578999999999998874 3 3555566667654 689999999999999999 99999985
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.4e-17 Score=131.98 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=81.4
Q ss_pred hhhHHHHhhhhhhhhhhhhhccCCc--------------chHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHH
Q psy10576 13 QWYDFLWDRLRGIRKDIVQQQLCSV--------------NTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCL 78 (151)
Q Consensus 13 ~~y~Fi~DR~RaIRqDl~iQ~~~~~--------------~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl 78 (151)
.-|+-+.+.+..++++++.|++-.+ .|.+|||..||+.|.. .|.+++++|+
T Consensus 18 ~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~---------------~D~~~F~~~~ 82 (274)
T 4b4t_T 18 GDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQT---------------FNFDSFENYF 82 (274)
T ss_dssp -------------------------------------------CHHHHHHCCSSC---------------SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHH
Confidence 3567888999999999999987421 2457999999998743 4789999999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhCC---ChhHHHHHHccC---hHhhcCHhHHHHHHHHHHHh-cCcccccC
Q psy10576 79 QSLIHMYDDLHAQGLVCPNEPEFRAYEILLKLN---RGDIIWEFQQLS---PHLQTAPEILFSLRVFSAFN-NNLYSLSQ 151 (151)
Q Consensus 79 ~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~---~~~~l~~l~~l~---~~~~~~~~v~~Al~i~~a~~-~Ny~rfFk 151 (151)
++|+.+|.+.+..+..++|+.||.||+||+.+. .+++-..+..+| +++.++|.|++|+++.+|+. |||.+||+
T Consensus 83 ~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~ 162 (274)
T 4b4t_T 83 NQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWD 162 (274)
T ss_dssp HHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999998765555789999999999999874 356666677777 46788999999999999999 99999985
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=93.14 E-value=0.55 Score=36.18 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=67.7
Q ss_pred hhccC--CcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy10576 31 QQQLC--SVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEILL 108 (151)
Q Consensus 31 iQ~~~--~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~ 108 (151)
++++. |++.+..+|+.+.-.+.- + .||...|+ .|+.+|.-. +.....+..+..+|.
T Consensus 15 l~~~~rYnp~~l~~le~Yv~qq~~~-------~--~YD~~anl--------alLklYq~~-----p~~~~~~ii~~iLlk 72 (226)
T 1rz4_A 15 LKGIDRYNPENLATLERYVETQAKE-------N--AYDLEANL--------AVLKLYQFN-----PAFFQTTVTAQILLK 72 (226)
T ss_dssp HHSGGGGCGGGHHHHHHHHHHHHHH-------T--CCCHHHHH--------HHHHHHHHS-----GGGCCHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHHHHHHhc-------c--cccHHHHH--------HHHHHHhcC-----CcccchhHHHHHHHH
Confidence 34444 788999999887665421 1 34422222 244556531 234567888888865
Q ss_pred hC---CChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCccccc
Q psy10576 109 KL---NRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLS 150 (151)
Q Consensus 109 ~l---~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfF 150 (151)
.| ..+++...+.-+|+.+.++|.++..+.+-..+. +||.+||
T Consensus 73 ~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW 118 (226)
T 1rz4_A 73 ALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW 118 (226)
T ss_dssp HHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHH
Confidence 54 456777666668999999999999999999999 9999987
No 5
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=39.68 E-value=11 Score=18.12 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=10.8
Q ss_pred CCCChhhhhHHHHh
Q psy10576 7 PDINVSQWYDFLWD 20 (151)
Q Consensus 7 ~~~~~~~~y~Fi~D 20 (151)
...+..++|+|++|
T Consensus 6 ntttmddvynylfd 19 (22)
T 3e1k_B 6 NTTTMDDVYNYIFD 19 (26)
T ss_pred ccccHHHHHHHhcc
Confidence 34457889999987
No 6
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=34.44 E-value=15 Score=18.35 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.1
Q ss_pred CCChhhhhHHHHh
Q psy10576 8 DINVSQWYDFLWD 20 (151)
Q Consensus 8 ~~~~~~~y~Fi~D 20 (151)
..+..++|+|++|
T Consensus 5 TTTMDDvyNylFd 17 (26)
T 3bts_E 5 TTTMDDVYNYLFD 17 (26)
T ss_pred cccHHHHHHHhcC
Confidence 3457789999987
No 7
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=30.51 E-value=58 Score=19.82 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy10576 81 LIHMYDDLHAQGLVCPNEPEFRAYEI 106 (151)
Q Consensus 81 L~~lY~~~~~~g~~~~ne~EF~aY~i 106 (151)
|..+|+++-..|+ -.|.||++=+-
T Consensus 29 L~qLyk~LV~s~v--Ise~eFW~~r~ 52 (61)
T 2dii_A 29 LFQLYKDLVVSQV--ISAEEFWANRL 52 (61)
T ss_dssp HHHHHHHHHTTTS--SCHHHHHHHHC
T ss_pred HHHHHHHHHHhCc--CCHHHHHHHHH
Confidence 6679999865554 35999998543
No 8
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.47 E-value=53 Score=18.22 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=17.3
Q ss_pred HHhhhhhhhhhhhhhccCCc-chHHHHH
Q psy10576 18 LWDRLRGIRKDIVQQQLCSV-NTANILE 44 (151)
Q Consensus 18 i~DR~RaIRqDl~iQ~~~~~-~~i~vlE 44 (151)
+.||..||+|-+-+=--++. +++..||
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56888888887766555443 3555555
No 9
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=27.07 E-value=1.5e+02 Score=20.34 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=26.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHH
Q psy10576 63 SIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEP 99 (151)
Q Consensus 63 ~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~ 99 (151)
++|+ +.+||..-+..|..+|...++... +.||.
T Consensus 77 ~N~~---~~~~L~~E~~~Li~LY~~~~~~~L-T~N~~ 109 (139)
T 2au5_A 77 ENFS---SVEQLKGELARLIRLYFALAKDNL-TENQE 109 (139)
T ss_dssp TTCS---SHHHHHHHHHHHHHHHHHHHTTCC-CHHHH
T ss_pred CCcC---cHHHHHHHHHHHHHHHHHHHHhhc-cccch
Confidence 4676 679999999999999999988665 34443
No 10
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=20.89 E-value=35 Score=17.74 Aligned_cols=11 Identities=55% Similarity=0.730 Sum_probs=8.9
Q ss_pred HHHHhhhhhhh
Q psy10576 16 DFLWDRLRGIR 26 (151)
Q Consensus 16 ~Fi~DR~RaIR 26 (151)
+=+-.||||.|
T Consensus 18 DkLAqRLRALR 28 (29)
T 3ggz_E 18 DKLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHHc
Confidence 45678999998
Done!