Query psy10576
Match_columns 151
No_of_seqs 108 out of 404
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 21:57:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10576.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10576hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 44.6 12 0.0009 20.2 3.2 25 79-105 20-44 (48)
2 d1rz4a2 a.118.1.18 (A:2-131) E 39.3 13 0.00092 24.6 3.3 97 31-150 14-117 (130)
3 d2g7oa1 a.241.1.1 (A:60-127) T 18.6 50 0.0036 18.8 2.9 21 118-138 27-47 (68)
4 d2ftxb1 d.300.1.2 (B:155-213) 16.5 22 0.0016 20.1 0.9 8 15-22 50-57 (59)
5 d2au5a1 a.244.1.1 (A:1-132) Hy 15.8 1E+02 0.0074 19.4 4.2 33 63-99 74-106 (132)
6 d2ivxa2 a.74.1.1 (A:150-262) C 14.2 52 0.0038 20.5 2.5 71 11-86 21-96 (113)
7 d3dlqi1 a.26.1.3 (I:41-179) In 12.0 1.2E+02 0.009 19.5 4.0 67 16-90 10-91 (139)
8 d1ikpa3 f.1.5.1 (A:252-394) Ex 9.2 78 0.0057 20.2 2.0 89 50-148 6-101 (143)
9 d2e1fa1 a.60.8.1 (A:1142-1235) 9.1 1.3E+02 0.0094 17.7 3.0 58 16-76 13-73 (94)
10 d1tada1 a.66.1.1 (A:57-177) Tr 8.8 1.4E+02 0.01 18.2 3.2 19 125-143 69-87 (121)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.56 E-value=12 Score=20.24 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy10576 79 QSLIHMYDDLHAQGLVCPNEPEFRAYE 105 (151)
Q Consensus 79 ~~L~~lY~~~~~~g~~~~ne~EF~aY~ 105 (151)
-.|.++|+|+--.|+.+ -.||++=+
T Consensus 20 p~L~qLYkdLVvs~Vit--seEFWan~ 44 (48)
T d2diia1 20 PVLFQLYKDLVVSQVIS--AEEFWANR 44 (48)
T ss_dssp HHHHHHHHHHHTTTSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc--HHHHHHhc
Confidence 35888999998877654 68999844
No 2
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.29 E-value=13 Score=24.56 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=65.9
Q ss_pred hhccC--CcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-
Q psy10576 31 QQQLC--SVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEPEFRAYEIL- 107 (151)
Q Consensus 31 iQ~~~--~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL- 107 (151)
++++. |++.+.++|..+..-+-. ..||--.| -.|+.+|.-- +.....+-.+ .||
T Consensus 14 L~gidRYNPe~l~~Le~YV~~Q~~~---------~~Ydl~aN--------LalLKLYQfn-----P~~~~~~vi~-~ILl 70 (130)
T d1rz4a2 14 LKGIDRYNPENLATLERYVETQAKE---------NAYDLEAN--------LAVLKLYQFN-----PAFFQTTVTA-QILL 70 (130)
T ss_dssp HHSGGGGCGGGHHHHHHHHHHHHHH---------TCCCHHHH--------HHHHHHHHHS-----GGGCCHHHHH-HHHH
T ss_pred HhCcccCCHHHHHHHHHHHHHHHHh---------ccccHHHH--------HHHHHHHhcC-----cCcCCHHHHH-HHHH
Confidence 45555 899999999998777532 13553222 2344456521 1122344444 554
Q ss_pred ---HhCCChhHHHHHHccChHhhcCHhHHHHHHHHHHHh-cCccccc
Q psy10576 108 ---LKLNRGDIIWEFQQLSPHLQTAPEILFSLRVFSAFN-NNLYSLS 150 (151)
Q Consensus 108 ---~~l~~~~~l~~l~~l~~~~~~~~~v~~Al~i~~a~~-~Ny~rfF 150 (151)
.++..+++.-.+.-+|+.+.+.+.|+..+.+..-.. .+|..|+
T Consensus 71 KALt~~P~~DF~lc~~Li~~~~q~~e~i~~l~~L~~lLE~c~F~~FW 117 (130)
T d1rz4a2 71 KALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFW 117 (130)
T ss_dssp HHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcChhcCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 445678888888889999999999999999998888 8888886
No 3
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=18.60 E-value=50 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHccChHhhcCHhHHHHHHH
Q psy10576 118 EFQQLSPHLQTAPEILFSLRV 138 (151)
Q Consensus 118 ~l~~l~~~~~~~~~v~~Al~i 138 (151)
.+..++||+..+|.+..|--|
T Consensus 27 GI~~lSPHvsgnpkfe~~~mv 47 (68)
T d2g7oa1 27 GIESLSPHVSGNSKFEYANMV 47 (68)
T ss_dssp HHHHTCGGGTTCGGGCHHHHH
T ss_pred cccccCcccCCCcchhHHHHH
Confidence 345789999999998887543
No 4
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.46 E-value=22 Score=20.15 Aligned_cols=8 Identities=38% Similarity=1.336 Sum_probs=6.8
Q ss_pred hHHHHhhh
Q psy10576 15 YDFLWDRL 22 (151)
Q Consensus 15 y~Fi~DR~ 22 (151)
-+|+|||+
T Consensus 50 tnYiWd~L 57 (59)
T d2ftxb1 50 TKYIWERL 57 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 48999997
No 5
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=15.78 E-value=1e+02 Score=19.41 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=25.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCHH
Q psy10576 63 SIFDEKINTENLNNCLQSLIHMYDDLHAQGLVCPNEP 99 (151)
Q Consensus 63 ~~fd~~~n~~ql~~cl~~L~~lY~~~~~~g~~~~ne~ 99 (151)
++|+ +.+||..-+..|.++|...++... +.||.
T Consensus 74 ~N~~---~~~~L~~E~~~Li~LY~~~~~~~L-T~N~~ 106 (132)
T d2au5a1 74 ENFS---SVEQLKGELARLIRLYFALAKDNL-TENQE 106 (132)
T ss_dssp TTCS---SHHHHHHHHHHHHHHHHHHHTTCC-CHHHH
T ss_pred CCcC---cHHHHHHHHHHHHHHHHHHHHhhc-cccch
Confidence 4676 679999999999999999987665 34443
No 6
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.21 E-value=52 Score=20.50 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=43.9
Q ss_pred hhhhhHHHHhhhhhhhhhhhhhccCCcchHHHHHHHHHHHHHhhhhhcCCC-----CcccchhhhHHHHHHHHHHHHHHH
Q psy10576 11 VSQWYDFLWDRLRGIRKDIVQQQLCSVNTANILEQCARFHILCFDRLCGED-----ASIFDEKINTENLNNCLQSLIHMY 85 (151)
Q Consensus 11 ~~~~y~Fi~DR~RaIRqDl~iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~-----~~~fd~~~n~~ql~~cl~~L~~lY 85 (151)
....++|+.|=+|+ -|+.+|.--..-|+.++.-.+|++= ..+...+ -+.||...+.+++.+....++.+|
T Consensus 21 ~q~AW~~lnDs~r~--T~lcL~~~P~~IA~a~I~LA~~~~~---~~~p~~~~~~~Ww~~fd~~vt~e~i~~i~~~il~lY 95 (113)
T d2ivxa2 21 AQTSYFMATNSLHL--TTFCLQYKPTVIACVCIHLACKWSN---WEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQIL 95 (113)
T ss_dssp HHHHHHHHHHHHHH--CCGGGTSCHHHHHHHHHHHHHHHHT---CCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCeeeecCcHHHHHHHHHHHHHHhC---CCCCCCCCCCcHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34567888874441 2455554444445666666665541 1221111 246777788999999999999999
Q ss_pred H
Q psy10576 86 D 86 (151)
Q Consensus 86 ~ 86 (151)
+
T Consensus 96 e 96 (113)
T d2ivxa2 96 E 96 (113)
T ss_dssp H
T ss_pred H
Confidence 8
No 7
>d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=1.2e+02 Score=19.47 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=41.0
Q ss_pred HHHHhhhhhhhhhhh---------------hhccCCcchHHHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHHHHHH
Q psy10576 16 DFLWDRLRGIRKDIV---------------QQQLCSVNTANILEQCARFHILCFDRLCGEDASIFDEKINTENLNNCLQS 80 (151)
Q Consensus 16 ~Fi~DR~RaIRqDl~---------------iQ~~~~~~~i~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~cl~~ 80 (151)
.|||+|+=+|++-.. .|++.+...-.++=.+++||+----. .. ...+.+ ....+++.+.+
T Consensus 10 ~~i~n~~~~~~~~a~~~D~~~dvrLL~~~ll~~vk~~~~C~~~~~lL~FYL~~Vl~--~~-~~~~~~--~i~sl~n~l~~ 84 (139)
T d3dlqi1 10 PYITNRTFMLAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLF--PQ-SDRFQP--YMQEVVPFLAR 84 (139)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTCCCSSGGGGTTCCGGGHHHHHHHHHHHHHHHTTT--TT-TTSSTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchhhcCHHHHhhcccccccHHHHHHHHHHHHHhcc--cc-cccccc--hHHHHHHHHHH
Confidence 689999999987544 44555667778888999999865321 11 112322 34455555555
Q ss_pred HHHHHHHHhh
Q psy10576 81 LIHMYDDLHA 90 (151)
Q Consensus 81 L~~lY~~~~~ 90 (151)
+.++++.
T Consensus 85 ---l~~~L~~ 91 (139)
T d3dlqi1 85 ---LSNRLST 91 (139)
T ss_dssp ---HHHHHC-
T ss_pred ---HHHHHHh
Confidence 4555654
No 8
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.22 E-value=78 Score=20.23 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHhhhhhcCCCCcccch---hhhHHHHHHHHHH---HHHHHHHHhhCCCCCCCHHHHHHHHHHHhCCChhHHHHHHccC
Q psy10576 50 HILCFDRLCGEDASIFDE---KINTENLNNCLQS---LIHMYDDLHAQGLVCPNEPEFRAYEILLKLNRGDIIWEFQQLS 123 (151)
Q Consensus 50 ~i~s~~~l~~~~~~~fd~---~~n~~ql~~cl~~---L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~l~~l~~l~ 123 (151)
..++.|+.|+.|-+.|-. .-+.+++.+|--. |..+|-.-+ +...+-.. -|-.++..|+....+.
T Consensus 6 sAL~AH~~C~~PLET~~R~R~PR~~~~~~~C~Y~~Q~iVsL~~A~R---i~~~~~D~----V~~~~L~~P~~~~DL~--- 75 (143)
T d1ikpa3 6 AALTAHQACHLPLETFTRHRQPRGAEQLEQCGYPVQRLVALYLAAR---LSWNQVDQ----VIRNALASPGSGGDLG--- 75 (143)
T ss_dssp HHHHHHHHHTCCGGGGGCSSCCCSCHHHHHTHHHHHHHHHHHHHTT---CCGGGHHH----HHHHHHHSTTTTHHHH---
T ss_pred HHHHHHHhhCCcHHHHhhccCCCCchhhHhcccHHHHHHHHHHHHH---HHHHHHHH----HHHHHhcCCcccchHH---
Confidence 356789999988776652 2467888888433 333443221 11110000 0111222333222222
Q ss_pred hHhhcCHh-HHHHHHHHHHHhcCccc
Q psy10576 124 PHLQTAPE-ILFSLRVFSAFNNNLYS 148 (151)
Q Consensus 124 ~~~~~~~~-v~~Al~i~~a~~~Ny~r 148 (151)
..++++|. ++.|+.+.++..+.||+
T Consensus 76 ~~~~~~P~~~~~~LT~A~~~~~~~V~ 101 (143)
T d1ikpa3 76 EAIREQPEQARLALTLAAAESERFVR 101 (143)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 22455554 47788887776666664
No 9
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.14 E-value=1.3e+02 Score=17.70 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=35.3
Q ss_pred HHHHhhhhhhhhhhhhhccCCcchH---HHHHHHHHHHHHhhhhhcCCCCcccchhhhHHHHHH
Q psy10576 16 DFLWDRLRGIRKDIVQQQLCSVNTA---NILEQCARFHILCFDRLCGEDASIFDEKINTENLNN 76 (151)
Q Consensus 16 ~Fi~DR~RaIRqDl~iQ~~~~~~~i---~vlE~~~Rf~i~s~~~l~~~~~~~fd~~~n~~ql~~ 76 (151)
.=|+++||+.|.++.-.+=..+..| ..+..+++..=-+.-.|..- .++.. .-.+.+++
T Consensus 13 ~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~t~~eL~~I--~G~g~-~k~~kyG~ 73 (94)
T d2e1fa1 13 IVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRI--DGVSE-GKAAMLAP 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTS--TTCCH-HHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHheeeCHHHHHHHHHcCCCCHHHHcCC--CCCCH-HHHHHHHH
Confidence 3478999999999986654444433 66777777655444445432 34433 24555665
No 10
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.77 E-value=1.4e+02 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=12.6
Q ss_pred HhhcCHhHHHHHHHHHHHh
Q psy10576 125 HLQTAPEILFSLRVFSAFN 143 (151)
Q Consensus 125 ~~~~~~~v~~Al~i~~a~~ 143 (151)
.++++|.||.+++=..-++
T Consensus 69 ~LW~D~~iq~~~~r~~ef~ 87 (121)
T d1tada1 69 RLWKDSGIQACFDRASEYQ 87 (121)
T ss_dssp HHHHCHHHHHHHHTGGGSC
T ss_pred HHhCCHHHHHHHHhhhccc
Confidence 3678899998877333343
Done!