BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10577
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WKY|A Chain A, Crystal Structure Of Alkaline Mannanase From Bacillus Sp.
           Strain Jamb- 602: Catalytic Domain And Its Carbohydrate
           Binding Module
          Length = 464

 Score = 30.0 bits (66), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 78  RAVRYLMKFRDVTLGRSTADHSVDIDL------SLEGPAWKVSRRQACIRMRNNG 126
           RAV Y ++ R   +G+   + +V I++      S +G AW    +QA  R+RN G
Sbjct: 106 RAVDYWIEMRSALIGK---EDTVIINIANEWFGSWDGAAWADGYKQAIPRLRNAG 157


>pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
 pdb|1KOP|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
 pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
 pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
          Length = 223

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 85  KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIAN--EGKRPIYVDG 142
           +FR  + G++ +  ++   +S + PA KV+ + + + + NNG     N  EG   + V+G
Sbjct: 21  EFRLCSTGKNQSPVNITETVSGKLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTLTVNG 80

Query: 143 R 143
           R
Sbjct: 81  R 81


>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
           Type Tyrosine-Protein Phosphatase F
          Length = 103

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 58  HVTG--SNTPEL--DKQTYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEG 108
           HVTG  ++T EL  D    A   GR + Y + FRD+   +   + + D   +L G
Sbjct: 16  HVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTG 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,113,608
Number of Sequences: 62578
Number of extensions: 181447
Number of successful extensions: 388
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)