Query psy10577
Match_columns 203
No_of_seqs 170 out of 479
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 21:58:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2293|consensus 100.0 2E-39 4.4E-44 300.7 11.7 182 3-186 348-547 (547)
2 PF00498 FHA: FHA domain; Int 99.7 1.8E-16 3.8E-21 110.4 7.8 67 89-162 1-68 (68)
3 cd00060 FHA Forkhead associate 99.6 1.8E-14 3.8E-19 105.5 11.9 92 71-168 3-100 (102)
4 TIGR03354 VI_FHA type VI secre 99.5 3E-13 6.6E-18 124.6 9.9 89 77-171 14-104 (396)
5 COG3456 Predicted component of 99.3 1E-11 2.2E-16 114.3 7.3 90 77-172 16-106 (430)
6 COG1716 FOG: FHA domain [Signa 99.2 1.2E-10 2.5E-15 95.3 10.6 83 81-173 83-167 (191)
7 PLN02927 antheraxanthin epoxid 99.2 5.6E-11 1.2E-15 115.9 9.2 86 81-169 548-645 (668)
8 smart00240 FHA Forkhead associ 99.0 4.9E-10 1.1E-14 73.6 5.9 51 89-145 1-52 (52)
9 COG5025 Transcription factor o 98.0 3.2E-06 7E-11 81.9 1.9 105 68-175 70-193 (610)
10 KOG1882|consensus 97.9 1.5E-05 3.3E-10 69.5 5.4 70 87-162 194-276 (293)
11 KOG0245|consensus 97.9 6.5E-05 1.4E-09 76.0 10.1 82 81-169 471-555 (1221)
12 KOG1881|consensus 97.7 2.9E-05 6.2E-10 76.1 3.4 92 72-170 159-264 (793)
13 TIGR01663 PNK-3'Pase polynucle 97.6 0.0001 2.2E-09 70.7 6.4 84 77-169 22-110 (526)
14 PF13325 MCRS_N: N-terminal re 97.3 0.00014 3E-09 61.8 2.4 36 3-38 140-175 (199)
15 KOG1880|consensus 96.9 0.00082 1.8E-08 60.3 3.6 87 71-163 19-110 (337)
16 TIGR02500 type_III_yscD type I 96.8 0.0086 1.9E-07 55.6 9.2 91 71-170 2-95 (410)
17 KOG0615|consensus 96.6 0.0031 6.8E-08 59.1 5.3 82 82-163 59-147 (475)
18 KOG2293|consensus 96.4 0.0013 2.8E-08 62.8 1.5 38 1-38 483-520 (547)
19 KOG0241|consensus 95.9 0.022 4.8E-07 58.2 7.2 92 69-171 445-541 (1714)
20 KOG1892|consensus 94.7 0.13 2.9E-06 52.8 8.3 113 58-178 345-463 (1629)
21 PRK11507 ribosome-associated p 86.0 1.8 3.8E-05 31.1 4.6 32 136-168 37-68 (70)
22 COG2501 S4-like RNA binding pr 83.2 2.7 5.8E-05 30.5 4.4 34 136-170 37-70 (73)
23 PRK06488 sulfur carrier protei 81.1 1.4 3E-05 30.2 2.4 24 138-161 33-58 (65)
24 PRK06437 hypothetical protein; 80.3 2.4 5.2E-05 29.6 3.3 23 137-161 38-60 (67)
25 cd00565 ThiS ThiaminS ubiquiti 80.2 2.1 4.5E-05 29.3 3.0 25 137-161 32-58 (65)
26 TIGR01683 thiS thiamine biosyn 79.7 1.9 4.1E-05 29.5 2.6 25 137-161 31-57 (64)
27 PRK05659 sulfur carrier protei 79.4 1.7 3.7E-05 29.7 2.3 24 138-161 34-59 (66)
28 PRK07696 sulfur carrier protei 78.8 2.1 4.7E-05 29.8 2.7 25 137-161 34-60 (67)
29 TIGR02988 YaaA_near_RecF S4 do 77.8 2.9 6.2E-05 28.1 3.0 25 136-161 34-58 (59)
30 PRK06944 sulfur carrier protei 77.7 2.6 5.6E-05 28.6 2.8 25 137-161 32-58 (65)
31 PRK01777 hypothetical protein; 76.4 2.7 5.9E-05 31.6 2.8 44 133-181 47-90 (95)
32 PRK15367 type III secretion sy 76.2 11 0.00023 35.5 7.2 85 75-175 14-98 (395)
33 PRK07440 hypothetical protein; 75.9 2.8 6.1E-05 29.6 2.6 25 137-161 37-63 (70)
34 smart00363 S4 S4 RNA-binding d 75.7 5 0.00011 25.1 3.6 26 136-163 26-52 (60)
35 PF02824 TGS: TGS domain; Int 75.5 2.4 5.1E-05 28.9 2.1 23 137-161 36-58 (60)
36 cd00754 MoaD Ubiquitin domain 75.4 3.3 7.1E-05 28.8 2.9 23 137-161 51-73 (80)
37 PF13275 S4_2: S4 domain; PDB: 75.2 3.5 7.5E-05 29.1 2.9 32 136-168 33-64 (65)
38 PRK06083 sulfur carrier protei 74.4 2.4 5.1E-05 31.2 2.0 25 137-161 51-77 (84)
39 PF14478 DUF4430: Domain of un 72.7 3.7 7.9E-05 28.5 2.6 24 138-161 43-67 (68)
40 PRK08053 sulfur carrier protei 72.6 4.2 9E-05 28.0 2.8 25 137-161 33-59 (66)
41 PF02597 ThiS: ThiS family; I 71.9 3.1 6.7E-05 28.7 2.0 26 136-161 44-70 (77)
42 TIGR01687 moaD_arch MoaD famil 71.0 4.9 0.00011 28.8 3.0 25 137-161 57-81 (88)
43 smart00797 AHS2 Allophanate hy 70.4 12 0.00025 33.5 5.8 44 118-163 38-82 (280)
44 PF14451 Ub-Mut7C: Mut7-C ubiq 70.2 5.3 0.00012 29.2 3.0 32 130-163 39-75 (81)
45 PF02626 AHS2: Allophanate hyd 70.0 7.1 0.00015 34.7 4.3 44 118-163 38-82 (271)
46 cd01764 Urm1 Urm1-like ubuitin 68.9 4.7 0.0001 30.1 2.6 25 137-161 61-87 (94)
47 PF01479 S4: S4 domain; Inter 68.8 4.3 9.4E-05 25.8 2.1 22 136-159 26-48 (48)
48 COG2104 ThiS Sulfur transfer p 65.2 6.7 0.00014 27.8 2.6 25 137-161 35-61 (68)
49 PRK05863 sulfur carrier protei 64.8 4.3 9.3E-05 28.0 1.6 25 137-161 33-58 (65)
50 COG1984 DUR1 Allophanate hydro 63.3 20 0.00044 32.7 5.9 45 117-163 58-103 (314)
51 PF03166 MH2: MH2 domain; Int 61.9 9.3 0.0002 31.6 3.3 29 118-146 68-96 (181)
52 TIGR00724 urea_amlyse_rel biot 61.4 19 0.00042 32.7 5.5 44 118-163 60-105 (314)
53 cd00050 MH2 MH2 domain; C term 60.5 22 0.00048 29.8 5.3 43 118-161 69-117 (176)
54 cd00165 S4 S4/Hsp/ tRNA synthe 59.5 15 0.00032 23.6 3.4 26 136-163 26-52 (70)
55 PRK11092 bifunctional (p)ppGpp 59.4 7.9 0.00017 38.9 2.9 30 131-162 415-446 (702)
56 PRK08364 sulfur carrier protei 59.0 11 0.00024 26.2 2.9 23 137-161 41-63 (70)
57 smart00524 DWB Domain B in dwa 56.9 27 0.00058 29.2 5.2 43 118-161 64-112 (171)
58 PLN02799 Molybdopterin synthas 53.9 16 0.00035 25.8 3.0 23 137-161 53-75 (82)
59 cd01666 TGS_DRG_C TGS_DRG_C: 52.3 13 0.00027 26.8 2.2 21 139-161 53-73 (75)
60 KOG2294|consensus 50.9 34 0.00074 31.5 5.4 105 79-183 59-185 (454)
61 TIGR01682 moaD molybdopterin c 48.7 20 0.00044 25.2 2.9 23 137-161 51-73 (80)
62 PF09269 DUF1967: Domain of un 47.3 18 0.0004 25.4 2.4 18 151-168 52-69 (69)
63 TIGR00691 spoT_relA (p)ppGpp s 47.0 16 0.00035 36.5 2.8 48 132-181 390-447 (683)
64 COG0317 SpoT Guanosine polypho 45.4 20 0.00043 36.1 3.1 51 131-183 416-476 (701)
65 PRK10872 relA (p)ppGpp synthet 45.3 18 0.00038 36.7 2.8 50 132-183 434-497 (743)
66 TIGR03595 Obg_CgtA_exten Obg f 43.9 21 0.00045 25.1 2.3 19 150-168 51-69 (69)
67 KOG3159|consensus 40.5 45 0.00097 30.6 4.3 53 81-140 43-97 (336)
68 PF09036 Bcr-Abl_Oligo: Bcr-Ab 39.2 22 0.00047 25.9 1.7 20 32-51 31-51 (79)
69 PRK11840 bifunctional sulfur c 38.7 25 0.00053 32.3 2.4 25 137-161 33-59 (326)
70 PF11012 DUF2850: Protein of u 37.5 59 0.0013 23.8 3.8 46 133-181 21-68 (79)
71 TIGR02712 urea_carbox urea car 36.7 64 0.0014 34.5 5.4 46 118-165 509-555 (1201)
72 cd01669 TGS_Ygr210_C TGS_Ygr21 36.2 36 0.00078 24.4 2.5 19 141-161 56-74 (76)
73 cd01668 TGS_RelA_SpoT TGS_RelA 36.1 44 0.00095 21.4 2.8 22 138-161 37-58 (60)
74 cd00210 PTS_IIA_glc PTS_IIA, P 35.3 1.2E+02 0.0026 23.8 5.5 51 115-169 52-102 (124)
75 PF04508 Pox_A_type_inc: Viral 33.8 47 0.001 18.8 2.2 18 35-52 2-20 (23)
76 PF01436 NHL: NHL repeat; Int 33.3 74 0.0016 18.0 3.1 20 120-139 7-26 (28)
77 PF04710 Pellino: Pellino; In 33.0 36 0.00079 32.1 2.6 34 150-183 233-274 (416)
78 TIGR03069 PS_II_S4 photosystem 32.8 67 0.0014 28.2 4.2 33 136-169 208-241 (257)
79 PRK09507 cspE cold shock prote 31.8 1.1E+02 0.0025 21.2 4.5 50 113-162 1-53 (69)
80 TIGR00830 PTBA PTS system, glu 31.7 1.5E+02 0.0033 23.2 5.6 53 114-170 51-103 (121)
81 PRK11130 moaD molybdopterin sy 31.6 56 0.0012 23.1 2.9 22 138-161 53-74 (81)
82 KOG3063|consensus 29.0 72 0.0016 28.5 3.6 54 111-170 20-73 (301)
83 PRK10348 ribosome-associated h 28.7 97 0.0021 24.8 4.1 33 136-170 34-68 (133)
84 PTZ00329 eukaryotic translatio 28.1 3.3E+02 0.0072 22.4 7.2 59 120-181 39-106 (155)
85 PRK05327 rpsD 30S ribosomal pr 28.0 66 0.0014 27.2 3.2 39 113-164 106-145 (203)
86 cd01616 TGS The TGS domain, na 27.7 79 0.0017 19.3 2.9 22 138-161 37-58 (60)
87 KOG3842|consensus 27.4 40 0.00087 31.2 1.9 34 150-183 246-287 (429)
88 PRK09439 PTS system glucose-sp 27.0 1.8E+02 0.004 24.0 5.6 52 115-170 74-125 (169)
89 PF11142 DUF2917: Protein of u 26.0 2.2E+02 0.0047 19.5 5.0 43 115-162 15-57 (63)
90 PRK10700 23S rRNA pseudouridyl 25.6 1.1E+02 0.0023 27.2 4.3 43 112-165 14-56 (289)
91 PF08130 Antimicrobial18: Type 25.3 38 0.00082 23.4 1.0 32 107-138 28-59 (60)
92 PF11976 Rad60-SLD: Ubiquitin- 25.3 55 0.0012 22.1 1.9 24 138-161 44-70 (72)
93 PLN00208 translation initiatio 25.3 3.8E+02 0.0081 21.9 7.0 59 120-181 39-106 (145)
94 COG0564 RluA Pseudouridylate s 24.5 77 0.0017 28.2 3.1 26 137-164 38-63 (289)
95 PLN00051 RNA-binding S4 domain 23.0 1.2E+02 0.0025 26.9 4.0 33 136-169 216-249 (267)
96 PF07833 Cu_amine_oxidN1: Copp 22.9 1.4E+02 0.0031 20.6 3.8 30 126-155 35-64 (93)
97 COG2190 NagE Phosphotransferas 22.8 3E+02 0.0065 22.7 6.0 51 116-170 60-110 (156)
98 PRK06789 flagellar motor switc 22.6 72 0.0016 23.0 2.1 25 137-161 45-69 (74)
99 PF03658 Ub-RnfH: RnfH family 22.5 47 0.001 24.6 1.1 30 132-163 43-72 (84)
100 PF07273 DUF1439: Protein of u 22.2 1.2E+02 0.0026 24.3 3.5 55 79-133 27-90 (152)
101 TIGR01017 rpsD_bact ribosomal 22.0 87 0.0019 26.4 2.8 43 112-166 102-144 (200)
102 PRK10475 23S rRNA pseudouridin 21.4 1.4E+02 0.003 26.7 4.1 26 137-164 32-57 (290)
103 KOG3121|consensus 21.3 1.1E+02 0.0023 25.4 3.1 47 110-161 19-71 (184)
104 CHL00113 rps4 ribosomal protei 21.0 1E+02 0.0022 26.2 3.1 41 112-164 101-141 (201)
105 COG2914 Uncharacterized protei 20.9 79 0.0017 24.2 2.1 31 133-165 47-77 (99)
106 COG1188 Ribosome-associated he 20.9 1.6E+02 0.0035 22.5 3.8 32 137-170 35-68 (100)
107 TIGR00531 BCCP acetyl-CoA carb 20.6 1.5E+02 0.0032 24.0 3.8 17 152-168 139-155 (156)
108 PF10949 DUF2777: Protein of u 20.2 1.7E+02 0.0036 24.8 4.1 30 136-165 59-89 (185)
No 1
>KOG2293|consensus
Probab=100.00 E-value=2e-39 Score=300.71 Aligned_cols=182 Identities=35% Similarity=0.518 Sum_probs=170.3
Q ss_pred CCCceeecccCCccccccCCCCCCCcccccc--cchhH-----H---HHHHHHHHHhhhcceeeecccCC-CCCCCCCc-
Q psy10577 3 NNGDFFIANEGKRPIYVDGRPIIASNKYKLN--HNSII-----E---KELKKVEEEMKNWAVIVDHVTGS-NTPELDKQ- 70 (203)
Q Consensus 3 ~~~~~~i~nfsd~e~~I~d~~L~~~~de~L~--~El~~-----~---~~i~~Le~~~~~~~~~v~~v~~~-~~~~~~~~- 70 (203)
+-+|+ ++|.++|+.+++..+.+..||+|+ +|..+ + +.++.||+++.+|+++++++++. .+++++.+
T Consensus 348 ~~sd~--l~~~~ae~q~~~~~~~~e~DE~Le~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqr 425 (547)
T KOG2293|consen 348 NESDH--LRRIDAEDQIQGENYNEESDEELESDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQR 425 (547)
T ss_pred cCCcc--cccccchhccchhhhcccccccccchHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhh
Confidence 45677 899999999999999999999999 77766 4 99999999999999999999884 45555554
Q ss_pred ------eEEEEEeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEE
Q psy10577 71 ------TYAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRP 144 (203)
Q Consensus 71 ------~lavL~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~ 144 (203)
|+|||+|+..+|+|++++|++||++.+..|||||+++|++++|||+||.|++..+|.|+|+|+||..|+|||.+
T Consensus 426 ai~~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~ 505 (547)
T KOG2293|consen 426 AIAFHGAIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGE 505 (547)
T ss_pred hhhhcceeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceecCCCCEEEECCEEEEEEeChHHHHHHHcCCCCCc
Q psy10577 145 IIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTT 186 (203)
Q Consensus 145 i~~g~~~~L~~gd~Ieig~~~f~F~~n~~~v~~ir~~~~~~~ 186 (203)
|.+|+++.|+++|+|||.+++|+|++|+++|..++++.+|++
T Consensus 506 l~~gq~~~L~~nclveIrg~~FiF~~N~~~v~~~l~~~~K~~ 547 (547)
T KOG2293|consen 506 LDRGQKVILKNNCLVEIRGLRFIFEINQEAVGQYLKENAKRK 547 (547)
T ss_pred ccCCceEEeccCcEEEEccceEEEeecHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999863
No 2
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.67 E-value=1.8e-16 Score=110.39 Aligned_cols=67 Identities=33% Similarity=0.557 Sum_probs=56.2
Q ss_pred eEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcC-CCCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 89 i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlG-sng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
++|||+.. .|+.|. .+.|||+||.|.++.++.|+|+|++ +|||||||+++.++++++|++||+|+||
T Consensus 1 ~~iGR~~~---~di~l~----~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD---CDIVLP----DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT---SSEEET----STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC---CCEEEC----CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 58999943 355553 4789999999999876589999997 5999999999999999999999999997
No 3
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.60 E-value=1.8e-14 Score=105.55 Aligned_cols=92 Identities=27% Similarity=0.511 Sum_probs=74.0
Q ss_pred eEEEEEe--eceEEEeec-CceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEE-cCCCCeEECCEEec
Q psy10577 71 TYAVLRG--RAVRYLMKF-RDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIAN-EGKRPIYVDGRPII 146 (203)
Q Consensus 71 ~lavL~G--~~~~~~m~~-~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~d-lGsng~~VNG~~i~ 146 (203)
.|.++.| ....|.|.. .+++|||+... +|+.+. .+.|||.||+|.++.++.|++.+ .++||++|||+++.
T Consensus 3 ~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~--~~i~l~----~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~ 76 (102)
T cd00060 3 RLVVLSGDASGRRYYLDPGGTYTIGRDSDN--CDIVLD----DPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVS 76 (102)
T ss_pred EEEEecCCCceeEEEECCCCeEEECcCCCc--CCEEcC----CCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECC
Confidence 4556666 567899999 99999999876 455553 58999999999999734555555 55699999999999
Q ss_pred CCCceecCCCCEEEEC--CEEEEE
Q psy10577 147 ASNKYKLNHNSIIEIA--GLHFTF 168 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig--~~~f~F 168 (203)
++.+++|++||.|.|| ...|.|
T Consensus 77 ~~~~~~l~~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 77 PGEPVRLRDGDVIRLGNTSISFRF 100 (102)
T ss_pred CCCcEECCCCCEEEECCeEEEEEE
Confidence 9899999999999999 455554
No 4
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.45 E-value=3e-13 Score=124.64 Aligned_cols=89 Identities=24% Similarity=0.409 Sum_probs=75.4
Q ss_pred eeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEEC--CEEecCCCceecC
Q psy10577 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVD--GRPIIASNKYKLN 154 (203)
Q Consensus 77 G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VN--G~~i~~g~~~~L~ 154 (203)
|....|.+....++|||+..+ |+-| .++...|||+||+|.++ +|.|+|+|+++|||||| |+++.+|.+++|+
T Consensus 14 g~~~~~~f~~~~~~IGR~~~~---d~~l--~d~~~~VS~~Ha~I~~~-~g~~~l~DlStNGT~VN~sg~~l~~~~~~~L~ 87 (396)
T TIGR03354 14 GIAAQKTFGTNGGTIGRSEDC---DWVL--PDPERHVSGRHARIRYR-DGAYLLTDLSTNGVFLNGSGSPLGRGNPVRLE 87 (396)
T ss_pred CcceEEEECCCCEEEecCCCC---CEEe--CCCCCCcchhhcEEEEE-CCEEEEEECCCCCeEECCCCCCCCCCCceEcC
Confidence 344578888999999998743 3323 34455699999999998 57899999977999999 9999999999999
Q ss_pred CCCEEEECCEEEEEEeC
Q psy10577 155 HNSIIEIAGLHFTFLVN 171 (203)
Q Consensus 155 ~gd~Ieig~~~f~F~~n 171 (203)
+||+|.||.+.|.|.++
T Consensus 88 ~GD~I~iG~~~lrv~~~ 104 (396)
T TIGR03354 88 QGDRLRLGDYEIRVSLG 104 (396)
T ss_pred CCCEEEECCEEEEEEeC
Confidence 99999999999999995
No 5
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.26 E-value=1e-11 Score=114.27 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=77.6
Q ss_pred eeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCc-eecCC
Q psy10577 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNK-YKLNH 155 (203)
Q Consensus 77 G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~-~~L~~ 155 (203)
|+-.++.......+|||+.++ |..+.++...||++||+|.++ +|.|||.|.+.+|++|||..+..|.. ++|++
T Consensus 16 G~~aq~~f~~~~g~IGrs~dc-----dW~i~D~~~~VS~~Hc~I~~~-dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqq 89 (430)
T COG3456 16 GKAAQKLFDRGGGVIGRSPDC-----DWQIDDPERFVSKQHCTISYR-DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQ 89 (430)
T ss_pred chhhhhhhhcCCcccccCCCC-----CccccCcccccchhheEEEec-CCeEEEEecCCCceeecccccCCCCCcccccc
Confidence 344567788889999997642 333346679999999999998 67899999999999999999999987 99999
Q ss_pred CCEEEECCEEEEEEeCh
Q psy10577 156 NSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 156 gd~Ieig~~~f~F~~n~ 172 (203)
||.|.||++.|..+++.
T Consensus 90 Gd~i~iG~y~i~V~l~~ 106 (430)
T COG3456 90 GDEILIGRYIIRVHLSR 106 (430)
T ss_pred CCEEeeccEEEEEEecc
Confidence 99999999999999976
No 6
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-10 Score=95.26 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=65.3
Q ss_pred EEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEE
Q psy10577 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSII 159 (203)
Q Consensus 81 ~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~I 159 (203)
.+......++|||+..+ |+-+ +...|||+||.|+++++ .|+++|+|+ ||+||||.++.+ .+.|++||.|
T Consensus 83 ~~~~~~~~~tigr~~~~---~i~~----~~~~vSR~Ha~l~~~~~-~~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i 152 (191)
T COG1716 83 VIVLGEPVTTIGRDPDN---DIVL----DDDVVSRRHAELRREGN-EVFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVI 152 (191)
T ss_pred ccccccceEEeccCCCC---CEEc----CCCccccceEEEEEeCC-ceEEEECCCCcceEECCeEccC--cEEcCCCCEE
Confidence 45455568999994332 3333 24899999999999865 689999997 999999999985 7999999999
Q ss_pred EECCEEE-EEEeChH
Q psy10577 160 EIAGLHF-TFLVNQS 173 (203)
Q Consensus 160 eig~~~f-~F~~n~~ 173 (203)
+||.... .+.+...
T Consensus 153 ~i~~~~~~~~~~~~~ 167 (191)
T COG1716 153 RLGGTLAERLRIILT 167 (191)
T ss_pred EECccceeeEeeccc
Confidence 9999887 5555433
No 7
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.19 E-value=5.6e-11 Score=115.94 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=67.4
Q ss_pred EEEe---ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEE-----ecCCCce
Q psy10577 81 RYLM---KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRP-----IIASNKY 151 (203)
Q Consensus 81 ~~~m---~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~-----i~~g~~~ 151 (203)
.+++ .+.-.+|||.+....+..-+.+ +.+.||+.||+|.++ ++.|||+|++| |||||||.. +.|+.++
T Consensus 548 ~~~l~~~~~~p~~iG~~~~~~~~~~~i~i--~~~~vS~~Ha~i~~~-~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~ 624 (668)
T PLN02927 548 TLCLTKDEDQPCIVGSEPDQDFPGMRIVI--PSSQVSKMHARVIYK-DGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPA 624 (668)
T ss_pred eeeeecCCCCCeEecCCCCcCCCCceEEe--cCCccChhHeEEEEE-CCEEEEEECCCCCccEEeCCCCceEecCCCCce
Confidence 3666 6778999999865432221111 248999999999998 57899999998 999998777 5689999
Q ss_pred ecCCCCEEEECC---EEEEEE
Q psy10577 152 KLNHNSIIEIAG---LHFTFL 169 (203)
Q Consensus 152 ~L~~gd~Ieig~---~~f~F~ 169 (203)
+|++||+|+||. ..|...
T Consensus 625 ~l~~~d~I~~g~~~~~~fr~~ 645 (668)
T PLN02927 625 RFRSSDIIEFGSDKKAAFRVK 645 (668)
T ss_pred EeCCCCEEEeCCCcceeEEEE
Confidence 999999999998 455544
No 8
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.05 E-value=4.9e-10 Score=73.56 Aligned_cols=51 Identities=39% Similarity=0.667 Sum_probs=40.8
Q ss_pred eEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcC-CCCeEECCEEe
Q psy10577 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPI 145 (203)
Q Consensus 89 i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlG-sng~~VNG~~i 145 (203)
++|||....+ |+-+. .+.|||.||+|.++.++.|+|+|++ ++|+||||+++
T Consensus 1 ~~iGr~~~~~--~i~~~----~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDC--DIQLP----GPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCC--CEEeC----CCCcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 4799988533 44442 2469999999999987779999999 69999999975
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=97.95 E-value=3.2e-06 Score=81.93 Aligned_cols=105 Identities=26% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCceEEEEEeeceEEEeecCceEECCCCCC---------------CCeeeecCCCCCCccccccceEEEEc-cCCcEEEE
Q psy10577 68 DKQTYAVLRGRAVRYLMKFRDVTLGRSTAD---------------HSVDIDLSLEGPAWKVSRRQACIRMR-NNGDFFIA 131 (203)
Q Consensus 68 ~~~~lavL~G~~~~~~m~~~~i~IGR~s~~---------------~~vDIDLs~eg~~~~ISR~HA~I~~~-~dg~f~l~ 131 (203)
.-+++|-+.|-.+.|+...-++.+||...- |..++++ |+.+.++|+|+.|+++ ..+.|++.
T Consensus 70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~ 146 (610)
T COG5025 70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIK 146 (610)
T ss_pred HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEE
Confidence 346899999999999999999999995431 3455555 7789999999999997 45789999
Q ss_pred EcCCCCeEECCEEecCCC---ceecCCCCEEEECCEEEEEEeChHHH
Q psy10577 132 NEGKRPIYVDGRPIIASN---KYKLNHNSIIEIAGLHFTFLVNQSLI 175 (203)
Q Consensus 132 dlGsng~~VNG~~i~~g~---~~~L~~gd~Ieig~~~f~F~~n~~~v 175 (203)
..|++|..|+|++..-|. +..|+-|+.++.++....|.++...-
T Consensus 147 i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~~~~ 193 (610)
T COG5025 147 IEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPSSTE 193 (610)
T ss_pred EeccCCccccceeeccCCCccceeeccccccccccccccccCccccc
Confidence 999999999999987444 78999999999999999998874433
No 10
>KOG1882|consensus
Probab=97.93 E-value=1.5e-05 Score=69.53 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=53.5
Q ss_pred CceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc------CC------cEEEEEcCC-CCeEECCEEecCCCceec
Q psy10577 87 RDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN------NG------DFFIANEGK-RPIYVDGRPIIASNKYKL 153 (203)
Q Consensus 87 ~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~------dg------~f~l~dlGs-ng~~VNG~~i~~g~~~~L 153 (203)
.-.++||.- ...||-+ +.+.-|++||+|.+.. || .-||.|+|+ ||||+|.++|.|..=+.|
T Consensus 194 s~yL~gRer--kIaDi~i----dhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL 267 (293)
T KOG1882|consen 194 SCYLDGRER--KIADIPI----DHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYEL 267 (293)
T ss_pred eeeecCcee--eeeccCC----CCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeee
Confidence 345677722 1223322 3578899999999973 32 368999998 999999999998777899
Q ss_pred CCCCEEEEC
Q psy10577 154 NHNSIIEIA 162 (203)
Q Consensus 154 ~~gd~Ieig 162 (203)
..+|+|.||
T Consensus 268 ~ekDvlkfg 276 (293)
T KOG1882|consen 268 REKDVLKFG 276 (293)
T ss_pred ecCceeeec
Confidence 999999999
No 11
>KOG0245|consensus
Probab=97.91 E-value=6.5e-05 Score=76.04 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=69.8
Q ss_pred EEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCc--EEEEEcCCCCeEECCEEecCCCceecCCCCE
Q psy10577 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD--FFIANEGKRPIYVDGRPIIASNKYKLNHNSI 158 (203)
Q Consensus 81 ~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~--f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~ 158 (203)
-|+|+...+.|||.+.+...||-|+. ..|=-.||.|+..+ |. +.|...+.--|||||+.|. ++.+|++||+
T Consensus 471 lY~ikeG~TrVG~~~a~~~~DI~LsG----~~I~~qHC~i~~~~-g~~~vtl~p~e~aetyVNGk~v~--ep~qL~~GdR 543 (1221)
T KOG0245|consen 471 LYYIKEGETRVGREDASSRQDIVLSG----QLIREQHCSIRNEG-GNDVVTLEPCEDAETYVNGKLVT--EPTQLRSGDR 543 (1221)
T ss_pred EEEeccCceecCCCCcccCCceEecc----hhhhhhceEEEecC-CCceEEeccCCccceeEccEEcC--CcceeccCCE
Confidence 58899999999999999999999975 58889999999874 45 6777777778999999998 5899999999
Q ss_pred EEECCE-EEEEE
Q psy10577 159 IEIAGL-HFTFL 169 (203)
Q Consensus 159 Ieig~~-~f~F~ 169 (203)
|-+|+- .|+|.
T Consensus 544 iilG~~H~frfn 555 (1221)
T KOG0245|consen 544 IILGGNHVFRFN 555 (1221)
T ss_pred EEEcCceeEEec
Confidence 999974 34443
No 12
>KOG1881|consensus
Probab=97.68 E-value=2.9e-05 Score=76.12 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=67.5
Q ss_pred EEEEE-eece-EEEee-cCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCC-c---------EEEEEcCC-CC
Q psy10577 72 YAVLR-GRAV-RYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG-D---------FFIANEGK-RP 137 (203)
Q Consensus 72 lavL~-G~~~-~~~m~-~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg-~---------f~l~dlGs-ng 137 (203)
|=+|. |+-. .+-+. ....+|||-+.+ |+-| + .+.|||.||.|.+...| . |||.|+|+ +|
T Consensus 159 lEvlKeg~iiet~~l~~~~~~~fgr~~~c---D~~~--e--HpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThg 231 (793)
T KOG1881|consen 159 LEVLKEGAIIETEDLKGAAACLFGRLGGC---DVAL--E--HPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHG 231 (793)
T ss_pred hhhhccCceeeeeecccceeEEecccCCC---cccc--c--cCcccccceeeeccCCCCCccccCCCCceEEeecccccc
Confidence 33555 4432 23233 335899998743 3322 2 47899999999997432 3 99999998 99
Q ss_pred eEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
+|+|-.++.|-.=++++=|++++||+-.++|..
T Consensus 232 t~~NK~rvppk~yir~~Vg~v~~fggsTrl~i~ 264 (793)
T KOG1881|consen 232 TFLNKDRVPPKVYIRDRVGHVARFGGSTRLYIF 264 (793)
T ss_pred ceeccccCCCcchhhhhHHHHHHhcCceEEEEe
Confidence 999999999866678999999999987666654
No 13
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.63 E-value=0.0001 Score=70.69 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=68.5
Q ss_pred eeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcE-EEEEcCCCCeEECCEEecCCCceecCC
Q psy10577 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDF-FIANEGKRPIYVDGRPIIASNKYKLNH 155 (203)
Q Consensus 77 G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f-~l~dlGsng~~VNG~~i~~g~~~~L~~ 155 (203)
++.....+....++|||+++...-| ++-||+|..+.-+.+..| .++.+|.|++-|||+.+.+|..+.|++
T Consensus 22 ~~~~~~~~~~~~~~~gr~pet~i~d---------~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~ 92 (526)
T TIGR01663 22 AEHHFIHLDAGALFLGRGPETGIRD---------RKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGH 92 (526)
T ss_pred CCCCeeccCCCceEEccCcccccch---------hhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecC
Confidence 4445666778899999998764444 799999999988855444 478899999999999999999999999
Q ss_pred CCEEEECC----EEEEEE
Q psy10577 156 NSIIEIAG----LHFTFL 169 (203)
Q Consensus 156 gd~Ieig~----~~f~F~ 169 (203)
||+++|=. +.+.|.
T Consensus 93 g~~l~~v~~~~~~~~~f~ 110 (526)
T TIGR01663 93 GDLLEIVNGLHPLTLQFE 110 (526)
T ss_pred CCEEEEeccccceeEEee
Confidence 99999973 445665
No 14
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.30 E-value=0.00014 Score=61.83 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCCceeecccCCccccccCCCCCCCcccccccchhH
Q psy10577 3 NNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSII 38 (203)
Q Consensus 3 ~~~~~~i~nfsd~e~~I~d~~L~~~~de~L~~El~~ 38 (203)
+.||.++++|||+|++|+|.+|.+++||+|++|+++
T Consensus 140 ~~~~~~~~sfsDaEd~i~d~~l~~~~de~l~~el~~ 175 (199)
T PF13325_consen 140 PKQDDQVLSFSDAEDLIDDSELKDPRDEALEHELEL 175 (199)
T ss_pred CCCCccccccccHHHHhhccccccCcccccchhhhH
Confidence 346778999999999999999999999999999998
No 15
>KOG1880|consensus
Probab=96.92 E-value=0.00082 Score=60.34 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=72.3
Q ss_pred eEEEEEeece---EEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCc-EEEEEcCC-CCeEECCEEe
Q psy10577 71 TYAVLRGRAV---RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD-FFIANEGK-RPIYVDGRPI 145 (203)
Q Consensus 71 ~lavL~G~~~---~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~-f~l~dlGs-ng~~VNG~~i 145 (203)
.|-++.|... ...+.++..++||+.+.+..+||- ...||.||-+.+...+. ++|.|+|+ +|||+-...+
T Consensus 19 hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh------~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL 92 (337)
T KOG1880|consen 19 HLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDH------ASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERL 92 (337)
T ss_pred ceeeeecchhHHHHHhhhhhhhhhccCCCccceEeec------chhhhhHhhhhhhhccceEEEEEccCCcceeeeeeee
Confidence 4556666542 344677789999999877667765 68999999999987766 99999998 8999999999
Q ss_pred cCCCceecCCCCEEEECC
Q psy10577 146 IASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 146 ~~g~~~~L~~gd~Ieig~ 163 (203)
.+..+++|.-|....||-
T Consensus 93 ~~~~p~~l~i~~~~~fga 110 (337)
T KOG1880|consen 93 EPHKPVQLEIGSTFHFGA 110 (337)
T ss_pred ccCCCccccCCceEEEec
Confidence 999999999999999994
No 16
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=96.76 E-value=0.0086 Score=55.65 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=66.9
Q ss_pred eEEEEEeec--eEEEeecCceEEC-CCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEecC
Q psy10577 71 TYAVLRGRA--VRYLMKFRDVTLG-RSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIA 147 (203)
Q Consensus 71 ~lavL~G~~--~~~~m~~~~i~IG-R~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~ 147 (203)
.+.+|.|.. ..+.+...+.+|| ++. ..||-|. ...|||+|++|....++ +.+.+. ..++.+||.++.-
T Consensus 2 ~lrvl~G~~~G~~~~L~~g~~~iG~~~~---~~di~L~----d~~~~~~h~~l~v~~~~-~~l~~~-~~~~~~~g~~~~~ 72 (410)
T TIGR02500 2 KLRVLSGPHRGAELPLPEGNLVLGTDAA---DCDIVLS----DGGIAAVHVSLHVRLEG-VTLAGA-VEPAWEEGGVLPD 72 (410)
T ss_pred EEEEecCCCCCcEEECCCCceEeccCCC---CcEEEeC----CCCccchheEEEEcCce-EEEecC-CcceeECCccccc
Confidence 466788876 4788999999999 763 2344443 47999999999998664 566643 3468999944443
Q ss_pred CCceecCCCCEEEECCEEEEEEe
Q psy10577 148 SNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 148 g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
..-.+|.-+..|++|+..|.|--
T Consensus 73 ~~g~~l~~~~~l~~g~~~~~~g~ 95 (410)
T TIGR02500 73 EEGTPLPSGTPLLVAGVAFALGE 95 (410)
T ss_pred CCCCccCCCCceecceeEEeccC
Confidence 34456889999999999999943
No 17
>KOG0615|consensus
Probab=96.63 E-value=0.0031 Score=59.13 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=56.1
Q ss_pred EEeecCceEECCCCCCCCe--ee---ecCCCCC-CccccccceEEEEcc-CCcEEEEEcCCCCeEECCEEecCCCceecC
Q psy10577 82 YLMKFRDVTLGRSTADHSV--DI---DLSLEGP-AWKVSRRQACIRMRN-NGDFFIANEGKRPIYVDGRPIIASNKYKLN 154 (203)
Q Consensus 82 ~~m~~~~i~IGR~s~~~~v--DI---DLs~eg~-~~~ISR~HA~I~~~~-dg~f~l~dlGsng~~VNG~~i~~g~~~~L~ 154 (203)
.-.-..+.++||...+..+ ++ |....+. -.++|..|-.+...+ ...+|+.|.++||||||...+..|....|+
T Consensus 59 ~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~~r~lk 138 (475)
T KOG0615|consen 59 IDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGLSRILK 138 (475)
T ss_pred ceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhcccccccc
Confidence 3456778999999654211 11 1111111 124555554443332 246999999999999999999999999999
Q ss_pred CCCEEEECC
Q psy10577 155 HNSIIEIAG 163 (203)
Q Consensus 155 ~gd~Ieig~ 163 (203)
+||.|.|+-
T Consensus 139 N~dei~is~ 147 (475)
T KOG0615|consen 139 NGDEISISI 147 (475)
T ss_pred CCCEEEecc
Confidence 999999994
No 18
>KOG2293|consensus
Probab=96.43 E-value=0.0013 Score=62.78 Aligned_cols=38 Identities=39% Similarity=0.720 Sum_probs=35.0
Q ss_pred CCCCCceeecccCCccccccCCCCCCCcccccccchhH
Q psy10577 1 MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSII 38 (203)
Q Consensus 1 ~~~~~~~~i~nfsd~e~~I~d~~L~~~~de~L~~El~~ 38 (203)
|+|||+|||.|.|++.++|||.+|..+....|-++|.+
T Consensus 483 L~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~nclv 520 (547)
T KOG2293|consen 483 LKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNNCLV 520 (547)
T ss_pred eccCCcEEeccCcceeEEeCCccccCCceEEeccCcEE
Confidence 68999999999999999999999999999998876655
No 19
>KOG0241|consensus
Probab=95.91 E-value=0.022 Score=58.24 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=68.3
Q ss_pred CceEEEEEeec-----eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCE
Q psy10577 69 KQTYAVLRGRA-----VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGR 143 (203)
Q Consensus 69 ~~~lavL~G~~-----~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~ 143 (203)
+.++.-+.|.. ..||++. ..+||- ....||-|+. -.|=++||+|..+.+|..++.-+-..-++|||.
T Consensus 445 K~ylvnlnadP~lnellvyyl~~-~tlig~---~~~~~i~l~g----lgi~p~h~vidI~~dg~l~~~p~~~~R~~VNGs 516 (1714)
T KOG0241|consen 445 KCYLVNLNADPALNELLVYYLKD-HTLIGL---FKSQDIQLSG----LGIQPKHCVIDIESDGELRLTPLLNARSCVNGS 516 (1714)
T ss_pred ceEEEeccCCccHHHHHHHhhcC-ceeecc---ccCcceeeec----CcccCccceeeeccCCcEEecccccceeeecCc
Confidence 44555666765 2566654 566773 2345666653 478899999999999988888776667999999
Q ss_pred EecCCCceecCCCCEEEECCEEEEEEeC
Q psy10577 144 PIIASNKYKLNHNSIIEIAGLHFTFLVN 171 (203)
Q Consensus 144 ~i~~g~~~~L~~gd~Ieig~~~f~F~~n 171 (203)
.+. ++++|.|||.|-.|.-.| |.+|
T Consensus 517 ~v~--~~t~L~~GdRiLwGnnHF-FrvN 541 (1714)
T KOG0241|consen 517 LVC--STTQLWHGDRILWGNNHF-FRVN 541 (1714)
T ss_pred eec--cccccccCceEEecccce-EEec
Confidence 987 589999999999998764 4444
No 20
>KOG1892|consensus
Probab=94.74 E-value=0.13 Score=52.83 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=80.1
Q ss_pred cccCCCCCCCCCceEEEEE--eec--eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEc
Q psy10577 58 HVTGSNTPELDKQTYAVLR--GRA--VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANE 133 (203)
Q Consensus 58 ~v~~~~~~~~~~~~lavL~--G~~--~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dl 133 (203)
+++|.+.+.-.-+.|..+. |.. .+|.+....+-+|-...+ |-.+-++| +.|=-+||-|.+- +|-..+.-.
T Consensus 345 ~v~g~~~~~~~lPvLve~s~dG~~s~~ri~L~~~vtEVGs~~~~---~~~iqLfG--P~IqprHc~it~m-eGVvTvTP~ 418 (1629)
T KOG1892|consen 345 SVYGSTLPPEKLPVLVELSPDGSDSRKRIRLQLSVTEVGSEKLD---DNSIQLFG--PGIQPRHCDITNM-EGVVTVTPR 418 (1629)
T ss_pred cccCCCCCcccCcEEEEEcCCCCCcceeEEeccCceeccccccC---CcceeeeC--CCCCccccchhhc-cceEEeccc
Confidence 4556555555567888886 433 467777777778865543 22333444 4677899999987 577777777
Q ss_pred CC-CCeEECCEEecCCCceecCCCCEEEECC-EEEEEEeChHHHHHH
Q psy10577 134 GK-RPIYVDGRPIIASNKYKLNHNSIIEIAG-LHFTFLVNQSLIQSL 178 (203)
Q Consensus 134 Gs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~-~~f~F~~n~~~v~~i 178 (203)
.. --+||||..|. ++..|++|+.|+||. -.|.|.....--+.+
T Consensus 419 ~~DA~t~VnGh~is--qttiL~~G~~v~fGa~hsfkF~dss~d~~~~ 463 (1629)
T KOG1892|consen 419 SMDAETYVNGHRIS--QTTILQSGMKVQFGASHSFKFVDSSQDHALA 463 (1629)
T ss_pred ccchhhhccceecc--hhhhhccCCEEEeccceeEEecCCchhhhhh
Confidence 66 68999999998 588999999999995 579998764444333
No 21
>PRK11507 ribosome-associated protein; Provisional
Probab=86.02 E-value=1.8 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCEEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F 168 (203)
+.+.|||+.-. -....|++||+|+|.+..+.+
T Consensus 37 g~V~VNGeve~-rRgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVET-RKRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEec-ccCCCCCCCCEEEECCEEEEE
Confidence 57999999654 455789999999999987654
No 22
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=83.16 E-value=2.7 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.3
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
+.++|||+.-. -....|.+||+|+|.+..+....
T Consensus 37 g~V~vNGe~Et-RRgkKlr~gd~V~i~~~~~~v~~ 70 (73)
T COG2501 37 GEVKVNGEVET-RRGKKLRDGDVVEIPGQRYQVVA 70 (73)
T ss_pred CeEEECCeeee-ccCCEeecCCEEEECCEEEEEEe
Confidence 47999999865 24578999999999998876554
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=81.12 E-value=1.4 Score=30.19 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEECCEEecCCC--ceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
+-||++.+++.+ ..+|++||.|+|
T Consensus 33 vavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 33 TAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred EEECCEEcCHHHcCccccCCCCEEEE
Confidence 789999998654 789999999997
No 24
>PRK06437 hypothetical protein; Provisional
Probab=80.27 E-value=2.4 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=19.9
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
.+.+||+.+. ....|++||.|+|
T Consensus 38 aV~vNg~iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 38 VVIVNGSPVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEEECCEECC--CceEcCCCCEEEE
Confidence 5679999997 5789999999997
No 25
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=80.21 E-value=2.1 Score=29.34 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.7
Q ss_pred CeEECCEEecCC--CceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
.+.|||+.+.+. ...+|++||.|+|
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEE
Confidence 477999999854 3589999999987
No 26
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=79.74 E-value=1.9 Score=29.52 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.4
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
-+.|||+.+.+.+ .+.|++||.|+|
T Consensus 31 ~v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 31 AVAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEE
Confidence 4678999997553 578999999987
No 27
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=79.35 E-value=1.7 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEECCEEecCC--CceecCCCCEEEE
Q psy10577 138 IYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
+.+||+.+.+. ....|++||.|+|
T Consensus 34 v~vNg~iv~r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 34 VEVNGEIVPRSQHASTALREGDVVEI 59 (66)
T ss_pred EEECCeEeCHHHcCcccCCCCCEEEE
Confidence 77899888855 3679999999998
No 28
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=78.80 E-value=2.1 Score=29.81 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.4
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
.+-+||+.+++.+ ...|++||.|+|
T Consensus 34 av~vN~~iv~r~~w~~~~L~~gD~iEI 60 (67)
T PRK07696 34 VVERNKDILQKDDHTDTSVFDGDQIEI 60 (67)
T ss_pred EEEECCEEeCHHHcCceecCCCCEEEE
Confidence 4789999998664 689999999997
No 29
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=77.77 E-value=2.9 Score=28.10 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=19.8
Q ss_pred CCeEECCEEecCCCceecCCCCEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
..++|||+++. ...+.|..||.|+|
T Consensus 34 G~V~VNg~~~~-~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELEN-RRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEcc-CCCCCCCCCCEEEe
Confidence 35999999984 12578999999987
No 30
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=77.74 E-value=2.6 Score=28.58 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.6
Q ss_pred CeEECCEEecCC--CceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
.+.|||+.+.+. ....|++||.|+|
T Consensus 32 ~v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 32 AVAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred EEEECCEEcCchhcccccCCCCCEEEE
Confidence 468999998743 4778999999997
No 31
>PRK01777 hypothetical protein; Validated
Probab=76.40 E-value=2.7 Score=31.63 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=30.4
Q ss_pred cCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEEeChHHHHHHHcC
Q psy10577 133 EGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRAD 181 (203)
Q Consensus 133 lGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~n~~~v~~ir~~ 181 (203)
+..+.+.|||+.+.. ..+|++||.|+|-.-. .+++.-.+..|.+
T Consensus 47 ~~~~~vgI~Gk~v~~--d~~L~dGDRVeIyrPL---~~DPk~~Rr~ra~ 90 (95)
T PRK01777 47 LAKNKVGIYSRPAKL--TDVLRDGDRVEIYRPL---LADPKELRRKRAE 90 (95)
T ss_pred cccceEEEeCeECCC--CCcCCCCCEEEEecCC---CCCHHHHHHHHHH
Confidence 344678899999875 5689999999996532 2445555555543
No 32
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=76.19 E-value=11 Score=35.50 Aligned_cols=85 Identities=22% Similarity=0.441 Sum_probs=56.6
Q ss_pred EEeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecC
Q psy10577 75 LRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLN 154 (203)
Q Consensus 75 L~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~ 154 (203)
|.||+ ..+...+.++|=.. .||-+.++ ......+..+++|-| + +.+.-.++|||.+-..+++ |+
T Consensus 14 L~GrE--l~Lp~G~~tlG~~g----cDi~lpL~------~~~~~~L~i~e~gi~-l-~~~~~~vwVnG~~~~~~~~--LP 77 (395)
T PRK15367 14 LQGRE--VWLNEGNLSLGEKG----CDICIPLT------INEKIILREQADSLF-V-DAGKARVRVNGRRFNPNKP--LP 77 (395)
T ss_pred ccCcE--EecCCCceeecCCC----ceEEEECC------CCCEEEEEEcCCcEE-E-ecCCceEEECCEEcCCCCC--CC
Confidence 34544 45666789999854 36666553 244455666666533 3 2344579999999887666 77
Q ss_pred CCCEEEECCEEEEEEeChHHH
Q psy10577 155 HNSIIEIAGLHFTFLVNQSLI 175 (203)
Q Consensus 155 ~gd~Ieig~~~f~F~~n~~~v 175 (203)
=+-.|+++|.-|+|=-..+.+
T Consensus 78 l~q~Ie~aG~~~vlG~~d~~L 98 (395)
T PRK15367 78 SSGVLQVAGVAIAFGKQDCEL 98 (395)
T ss_pred CcchhhhcceEEEecCccccc
Confidence 789999999999985443333
No 33
>PRK07440 hypothetical protein; Provisional
Probab=75.89 E-value=2.8 Score=29.56 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.1
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
-+-+||+.|++.+ ...|++||.|+|
T Consensus 37 av~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 37 AVEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred EEEECCEEeCHHHcCceecCCCCEEEE
Confidence 4778999998553 689999999997
No 34
>smart00363 S4 S4 RNA-binding domain.
Probab=75.66 E-value=5 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=20.7
Q ss_pred CCeEECCEEe-cCCCceecCCCCEEEECC
Q psy10577 136 RPIYVDGRPI-IASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 136 ng~~VNG~~i-~~g~~~~L~~gd~Ieig~ 163 (203)
+.++|||+++ .+ ..+|..||.|.+..
T Consensus 26 g~i~vng~~~~~~--~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKP--SYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCC--CeEeCCCCEEEEcc
Confidence 3699999998 54 56789999998865
No 35
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=75.50 E-value=2.4 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.8
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
+..|||+.+.. ..+|.+||.|+|
T Consensus 36 ~A~Vng~~vdl--~~~L~~~d~v~i 58 (60)
T PF02824_consen 36 AAKVNGQLVDL--DHPLEDGDVVEI 58 (60)
T ss_dssp EEEETTEEEET--TSBB-SSEEEEE
T ss_pred EEEEcCEECCC--CCCcCCCCEEEE
Confidence 67899998874 679999999997
No 36
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=75.37 E-value=3.3 Score=28.84 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.9
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-++|||+.+. ...+|++||.|.|
T Consensus 51 ~v~vNg~~v~--~~~~l~~gD~v~i 73 (80)
T cd00754 51 RIAVNGEYVR--LDTPLKDGDEVAI 73 (80)
T ss_pred EEEECCeEcC--CCcccCCCCEEEE
Confidence 5899999997 5678999999986
No 37
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=75.21 E-value=3.5 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=20.0
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCEEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F 168 (203)
+.++|||+.-. .....|++||+|+|++..+..
T Consensus 33 g~V~VNGe~e~-rrg~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVET-RRGKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB-----SS----SSEEEEETTEEEEE
T ss_pred CceEECCEEcc-ccCCcCCCCCEEEECCEEEEE
Confidence 46899999764 345789999999999987754
No 38
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=74.42 E-value=2.4 Score=31.24 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.1
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
-+-|||+.|++.+ .+.|++||.|+|
T Consensus 51 AVevNg~iVpr~~w~~t~L~egD~IEI 77 (84)
T PRK06083 51 VFAINNQVVPRSEWQSTVLSSGDAISL 77 (84)
T ss_pred EEEECCEEeCHHHcCcccCCCCCEEEE
Confidence 4679999998654 689999999997
No 39
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=72.74 E-value=3.7 Score=28.48 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=16.5
Q ss_pred eEECCEEecCCC-ceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASN-KYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~-~~~L~~gd~Iei 161 (203)
.+|||+....|- .+.|++||.|.+
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 579999999885 689999999986
No 40
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=72.62 E-value=4.2 Score=28.02 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=20.8
Q ss_pred CeEECCEEecCC--CceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
.+-||++.|++. ..+.|++||.|+|
T Consensus 33 aVavN~~iv~r~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 33 ALAINQQIIPREQWAQHIVQDGDQILL 59 (66)
T ss_pred EEEECCEEeChHHcCccccCCCCEEEE
Confidence 367999999855 5678999999997
No 41
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=71.88 E-value=3.1 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCeEECCEEecC-CCceecCCCCEEEE
Q psy10577 136 RPIYVDGRPIIA-SNKYKLNHNSIIEI 161 (203)
Q Consensus 136 ng~~VNG~~i~~-g~~~~L~~gd~Iei 161 (203)
--+.|||+.+.. +...+|++||.|.|
T Consensus 44 ~~v~vN~~~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 44 VAVAVNGEIVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEEETTEEEGGGTTTSBEETTEEEEE
T ss_pred EEEEECCEEcCCccCCcCcCCCCEEEE
Confidence 458999999987 45689999999986
No 42
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=71.04 E-value=4.9 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.2
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+...+..+|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~l~dgdev~i 81 (88)
T TIGR01687 57 IILVNGRNVDWGLGTELKDGDVVAI 81 (88)
T ss_pred EEEECCEecCccCCCCCCCCCEEEE
Confidence 4789999987654468999999875
No 43
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=70.38 E-value=12 Score=33.50 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=35.2
Q ss_pred eEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 118 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
.++++..+ -+|.-.|. -.+.|||+++.+++.+.++.||+|+|+.
T Consensus 38 ~~l~f~~~--~~iAitGA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~ 82 (280)
T smart00797 38 PTLRFTAD--AVIALTGADFPATLDGQPVPPWKPFLVRAGQVLSLGA 82 (280)
T ss_pred EEEEECCC--cEEEEeCCCCeeeECCEEcCCCeEEEECCCCEEEeCC
Confidence 45666533 45666775 5899999999999999999999999994
No 44
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=70.21 E-value=5.3 Score=29.18 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=25.1
Q ss_pred EEEcCC-----CCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 130 IANEGK-----RPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 130 l~dlGs-----ng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
|+-+|= .-++|||+.+.. .+.|++||.|.+-.
T Consensus 39 IEsLGVP~tEV~~i~vNG~~v~~--~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 39 IESLGVPHTEVGLILVNGRPVDF--DYRLKDGDRVAVYP 75 (81)
T ss_pred HHHcCCChHHeEEEEECCEECCC--cccCCCCCEEEEEe
Confidence 555662 468999999986 58999999998753
No 45
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=69.99 E-value=7.1 Score=34.67 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=31.3
Q ss_pred eEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 118 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
.++.+.. .-.|.-.|. -...|||+++..++.+.++.||+|+|+.
T Consensus 38 ~~l~f~~--~~~ialtGa~~~~~lng~~~~~~~~~~v~~Gd~L~~~~ 82 (271)
T PF02626_consen 38 PELRFEE--DTVIALTGADFEATLNGKPVPMWQPFLVKAGDVLKFGP 82 (271)
T ss_dssp -EEEESS---EEEEEEESCEEEEETTEEE-TTSEEEE-TT-EEEEEE
T ss_pred eEEEECC--CeEEEEECCCCceEECCEEccCCEEEEECCCCEEEecC
Confidence 3455543 345666776 4789999999999999999999999994
No 46
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=68.92 E-value=4.7 Score=30.09 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=21.4
Q ss_pred CeEECCEEec--CCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPII--ASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~--~g~~~~L~~gd~Iei 161 (203)
-++|||+.+. .|..++|++||.|.|
T Consensus 61 ~VlvN~~di~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 61 IVLINDTDWELLGEEDYILEDGDHVVF 87 (94)
T ss_pred EEEECCccccccCCcccCCCCcCEEEE
Confidence 3899999985 577899999999976
No 47
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=68.84 E-value=4.3 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCeEECCEEec-CCCceecCCCCEE
Q psy10577 136 RPIYVDGRPII-ASNKYKLNHNSII 159 (203)
Q Consensus 136 ng~~VNG~~i~-~g~~~~L~~gd~I 159 (203)
++++|||+.+. |+ ..++.||+|
T Consensus 26 g~V~VNg~~v~~~~--~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDPS--YIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESSTT--SBESTTEEE
T ss_pred CEEEECCEEEcCCC--CCCCCcCCC
Confidence 46999999998 54 456677765
No 48
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=65.18 E-value=6.7 Score=27.78 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.6
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
-+-|||.+++..+ ...|++||.|+|
T Consensus 35 av~vNg~iVpr~~~~~~~l~~gD~iev 61 (68)
T COG2104 35 AVAVNGEIVPRSQWADTILKEGDRIEV 61 (68)
T ss_pred EEEECCEEccchhhhhccccCCCEEEE
Confidence 4679999998554 578999999997
No 49
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=64.81 E-value=4.3 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=19.3
Q ss_pred CeEECCEEecCCC-ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN-KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~-~~~L~~gd~Iei 161 (203)
.+.+|+..+++.+ ...|++||.|+|
T Consensus 33 av~~N~~iv~r~~~~~~L~~gD~ieI 58 (65)
T PRK05863 33 AVAVDWSVLPRSDWATKLRDGARLEV 58 (65)
T ss_pred EEEECCcCcChhHhhhhcCCCCEEEE
Confidence 5778999887554 235999999997
No 50
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=63.33 E-value=20 Score=32.72 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=37.5
Q ss_pred ceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 117 QACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 117 HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
..++.+..+. +|.-.|. -..++||+++.++.++.++.|++|+|+.
T Consensus 58 g~t~~f~~~~--~ialTGad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~ 103 (314)
T COG1984 58 GPTLEFTSDA--LIALTGADCEATLDGQEVPPWSPYLVKAGQTLKLGR 103 (314)
T ss_pred CeEEEEecCc--EEEEeCCcccceECCEEcCCCceEEccCCCEEEecC
Confidence 3477887664 5666674 6899999999999999999999999994
No 51
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=61.88 E-value=9.3 Score=31.63 Aligned_cols=29 Identities=14% Similarity=0.461 Sum_probs=21.5
Q ss_pred eEEEEccCCcEEEEEcCCCCeEECCEEec
Q psy10577 118 ACIRMRNNGDFFIANEGKRPIYVDGRPII 146 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGsng~~VNG~~i~ 146 (203)
.+|+++.+|+.||+|++.+++||+...+.
T Consensus 68 i~l~~~~~G~V~l~n~s~~pVFVqS~~~n 96 (181)
T PF03166_consen 68 IKLSYEEDGNVWLYNRSDSPVFVQSPTLN 96 (181)
T ss_dssp EEEEEETTTEEEEEE-SSS-EEEE-HHHH
T ss_pred EEEEEecCCeEEEEECCCCCEEEccCCCC
Confidence 56777778999999999999999865554
No 52
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=61.44 E-value=19 Score=32.68 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=34.7
Q ss_pred eEEEEccCCcEEEEEcCC-CCeEECCEEecC-CCceecCCCCEEEECC
Q psy10577 118 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIA-SNKYKLNHNSIIEIAG 163 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~-g~~~~L~~gd~Ieig~ 163 (203)
.++++.. .-+|.-.|. -...+||+++.+ .+.+.++.||+|+|+.
T Consensus 60 ~~l~f~~--~~~iAltGA~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~ 105 (314)
T TIGR00724 60 PTIRFHC--DVIFAVTGADTDLCLNDGQVIPQWRPYEVKRGQILSLGR 105 (314)
T ss_pred EEEEEcC--CeEEEEeCCCCcceeCCcccCCCceEEEECCCCEEEeCC
Confidence 4555553 346666775 689999999976 7889999999999994
No 53
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=60.47 E-value=22 Score=29.78 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=29.7
Q ss_pred eEEEEccCCcEEEEEcCCCCeEECCEEecCC------CceecCCCCEEEE
Q psy10577 118 ACIRMRNNGDFFIANEGKRPIYVDGRPIIAS------NKYKLNHNSIIEI 161 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGsng~~VNG~~i~~g------~~~~L~~gd~Iei 161 (203)
.+|.++. |.-|++|++..++||+.-.+..- ..+.+..|+-|.+
T Consensus 69 v~L~~~~-g~Vw~~~~S~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKv 117 (176)
T cd00050 69 VQLSYEN-GEVWAYNLSDHPIFVQSPTLDYPLGRPLLTVHKVPPGYSLKV 117 (176)
T ss_pred EEEEEeC-CeEEEEEcCCCCEEEcCCCCCcccCCCCcceEEeCCCCEEEE
Confidence 4667765 78999999999999997665421 2245566555543
No 54
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=59.53 E-value=15 Score=23.58 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=20.2
Q ss_pred CCeEECCEEe-cCCCceecCCCCEEEECC
Q psy10577 136 RPIYVDGRPI-IASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 136 ng~~VNG~~i-~~g~~~~L~~gd~Ieig~ 163 (203)
++++|||+.+ .+ ..++..||.|.+..
T Consensus 26 g~V~vn~~~~~~~--~~~v~~~d~i~i~~ 52 (70)
T cd00165 26 GHVLVNGKVVTKP--SYKVKPGDVIEVDG 52 (70)
T ss_pred CCEEECCEEccCC--ccCcCCCCEEEEcC
Confidence 4799999998 44 45677889998875
No 55
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=59.36 E-value=7.9 Score=38.86 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.4
Q ss_pred EEcCC--CCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 131 ANEGK--RPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 131 ~dlGs--ng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
.++|. .|..|||+.++. .++|++||+|+|=
T Consensus 415 t~iG~~c~gAkVNg~~vpL--~~~L~~Gd~VeIi 446 (702)
T PRK11092 415 TDIGHACVGARVDRQPYPL--SQPLTSGQTVEII 446 (702)
T ss_pred chhhceeEEEEECCEECCC--CccCCCCCEEEEE
Confidence 34675 599999999985 7899999999996
No 56
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=59.05 E-value=11 Score=26.23 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.5
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.+||+.+. ....|++||.|+|
T Consensus 41 ~v~vNg~iv~--~~~~l~~gD~Vei 63 (70)
T PRK08364 41 IAKVNGKVAL--EDDPVKDGDYVEV 63 (70)
T ss_pred EEEECCEECC--CCcCcCCCCEEEE
Confidence 3568999885 3677999999987
No 57
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=56.94 E-value=27 Score=29.16 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEEccCCcEEEEEcCCCCeEECCEEecC------CCceecCCCCEEEE
Q psy10577 118 ACIRMRNNGDFFIANEGKRPIYVDGRPIIA------SNKYKLNHNSIIEI 161 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGsng~~VNG~~i~~------g~~~~L~~gd~Iei 161 (203)
.+|.++ +|.-|++|++..++||+-..+.. ...++|..|+-|.+
T Consensus 64 v~L~~~-~g~Vw~~~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lKv 112 (171)
T smart00524 64 VQLSYE-NGDVWLYNRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIKV 112 (171)
T ss_pred eEEEEe-CCeEEEEEcCCCCeEEcCCCcccccCCCCcceEEECCCCeEEE
Confidence 466776 47899999999999999666552 12345666666543
No 58
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=53.86 E-value=16 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=18.7
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+. ...+|++||.|.|
T Consensus 53 ~vavN~~~v~--~~~~l~dgDeVai 75 (82)
T PLN02799 53 VLALNEEYTT--ESAALKDGDELAI 75 (82)
T ss_pred EEEECCEEcC--CCcCcCCCCEEEE
Confidence 3788988874 5678999999987
No 59
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=52.31 E-value=13 Score=26.79 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.0
Q ss_pred EECCEEecCCCceecCCCCEEEE
Q psy10577 139 YVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 139 ~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-++|+.+.. ..+|+|||+|+|
T Consensus 53 ~~~gq~Vgl--~~~L~d~DvVeI 73 (75)
T cd01666 53 KHSPQRVGL--DHVLEDEDVVQI 73 (75)
T ss_pred cCCCeECCC--CCEecCCCEEEE
Confidence 358888764 678999999998
No 60
>KOG2294|consensus
Probab=50.87 E-value=34 Score=31.48 Aligned_cols=105 Identities=23% Similarity=0.294 Sum_probs=73.2
Q ss_pred ceEEEeecCceEECCCCCCC------Ceeeec--CCCCCCccccccceEEEEccC-CcEEEEEcCCCCeEECCEEecCC-
Q psy10577 79 AVRYLMKFRDVTLGRSTADH------SVDIDL--SLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIAS- 148 (203)
Q Consensus 79 ~~~~~m~~~~i~IGR~s~~~------~vDIDL--s~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGsng~~VNG~~i~~g- 148 (203)
.+.+++....+.+||..... ..+++. ...++...+++.|+.+..... ..|-....++++..+.+..--.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~SY~~L 138 (454)
T KOG2294|consen 59 DFTYYVQKLHVILGRPGSSSNSSPSASSGVDVNVQDLGPTKAISRKHAKIFYDLGRQRFSLPVPGKNGAGVKPPYSYSGL 138 (454)
T ss_pred cceeeccchhhccccccccccccccccccccccccccCCcccccccccccccccccCCccccccccCCCCcCCccccccc
Confidence 35677888899999953321 111111 123667899999999998743 46778888888778887766555
Q ss_pred --CceecCCCCEEEECCEEEEEEe---------C-hHHHHHHHcCCC
Q psy10577 149 --NKYKLNHNSIIEIAGLHFTFLV---------N-QSLIQSLRADPK 183 (203)
Q Consensus 149 --~~~~L~~gd~Ieig~~~f~F~~---------n-~~~v~~ir~~~~ 183 (203)
..+.+..+..|.++++-..|.. + ..-.+.||+++.
T Consensus 139 I~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLS 185 (454)
T KOG2294|consen 139 IAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLS 185 (454)
T ss_pred cccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccc
Confidence 4678999999999998666654 2 445567777754
No 61
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=48.67 E-value=20 Score=25.19 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.3
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+.. ..+|++||.|.|
T Consensus 51 ~v~vn~~~v~~--~~~l~dgDevai 73 (80)
T TIGR01682 51 MVAVNEEYVTD--DALLNEGDEVAF 73 (80)
T ss_pred EEEECCEEcCC--CcCcCCCCEEEE
Confidence 48899998873 689999999976
No 62
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=47.27 E-value=18 Score=25.38 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=12.2
Q ss_pred eecCCCCEEEECCEEEEE
Q psy10577 151 YKLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 151 ~~L~~gd~Ieig~~~f~F 168 (203)
.-.++||+|.||++.|.|
T Consensus 52 ~G~~~GD~V~Ig~~eFe~ 69 (69)
T PF09269_consen 52 AGAKEGDTVRIGDYEFEY 69 (69)
T ss_dssp TT--TT-EEEETTEEEE-
T ss_pred cCCCCCCEEEEcCEEEEC
Confidence 346899999999999976
No 63
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=46.96 E-value=16 Score=36.50 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=31.8
Q ss_pred EcCC--CCeEECCEEecCCCceecCCCCEEEECCEE--------EEEEeChHHHHHHHcC
Q psy10577 132 NEGK--RPIYVDGRPIIASNKYKLNHNSIIEIAGLH--------FTFLVNQSLIQSLRAD 181 (203)
Q Consensus 132 dlGs--ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~--------f~F~~n~~~v~~ir~~ 181 (203)
++|. -|..|||+.++ -..+|++||+|+|-.-. |-|.....+-.+||++
T Consensus 390 ~~g~~~~~a~vng~~v~--l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T~rAR~kIr~~ 447 (683)
T TIGR00691 390 DVGNKCTGAKVNGKIVP--LDKELENGDVVEIITGKNSNPSVIWLNFVVTSKARNKIRQW 447 (683)
T ss_pred HhHhceeEEEECCEECC--CCccCCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 4565 37799999887 46899999999996221 3344444455555544
No 64
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=45.40 E-value=20 Score=36.15 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=36.8
Q ss_pred EEcCC--CCeEECCEEecCCCceecCCCCEEEECCEE--------EEEEeChHHHHHHHcCCC
Q psy10577 131 ANEGK--RPIYVDGRPIIASNKYKLNHNSIIEIAGLH--------FTFLVNQSLIQSLRADPK 183 (203)
Q Consensus 131 ~dlGs--ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~--------f~F~~n~~~v~~ir~~~~ 183 (203)
.+.|- -|..|||+.++- .++|++||+|||-... +-|..+..+-.+||++..
T Consensus 416 t~iG~~c~gAkVnG~ivpl--~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k 476 (701)
T COG0317 416 TDIGHRCIGAKVNGRIVPL--TTKLQTGDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFK 476 (701)
T ss_pred chhcceeeEEEECCEEecc--ceecCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 34664 499999998873 6899999999996321 346666677777776654
No 65
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=45.34 E-value=18 Score=36.75 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=37.1
Q ss_pred EcCC--CCeEECCEEecCCCceecCCCCEEEECCE-----E---EE----EEeChHHHHHHHcCCC
Q psy10577 132 NEGK--RPIYVDGRPIIASNKYKLNHNSIIEIAGL-----H---FT----FLVNQSLIQSLRADPK 183 (203)
Q Consensus 132 dlGs--ng~~VNG~~i~~g~~~~L~~gd~Ieig~~-----~---f~----F~~n~~~v~~ir~~~~ 183 (203)
++|. .|..|||+.++. .++|++||+|+|=.- . |- |.....+-.+||++..
T Consensus 434 ~iG~~~~gAkvng~~v~l--~~~L~~GD~VeIits~~~~Ps~dWL~~~lg~v~T~rAR~kIr~~~k 497 (743)
T PRK10872 434 DVGHRCIGAKIGGRIVPF--TYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFR 497 (743)
T ss_pred HHHhhceEEEECCEECCC--CcCCCCCCEEEEEeCCCCCCChhHhccccCeeeCHHHHHHHHHHHH
Confidence 4564 478999999874 689999999999621 0 44 7888777778777644
No 66
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=43.94 E-value=21 Score=25.13 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.9
Q ss_pred ceecCCCCEEEECCEEEEE
Q psy10577 150 KYKLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 150 ~~~L~~gd~Ieig~~~f~F 168 (203)
+.=.++||+|.||++.|.|
T Consensus 51 ~~G~~~GD~V~Ig~~eFe~ 69 (69)
T TIGR03595 51 KAGAKDGDTVRIGDFEFEW 69 (69)
T ss_pred HcCCCCCCEEEEccEEEeC
Confidence 3557899999999998875
No 67
>KOG3159|consensus
Probab=40.52 E-value=45 Score=30.60 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=37.7
Q ss_pred EEEeecCceEECCCCCCC-CeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEE
Q psy10577 81 RYLMKFRDVTLGRSTADH-SVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYV 140 (203)
Q Consensus 81 ~~~m~~~~i~IGR~s~~~-~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~V 140 (203)
=++..++.|+|||.-.-| .+++.+ -+.+.=-.|+...+|.-++.|+|. |-.++
T Consensus 43 l~w~N~p~vVIGRhQNpw~E~nv~~-------~~e~~I~liRR~SGGGTVyHDlGNLN~S~l 97 (336)
T KOG3159|consen 43 LLWINDPCVVIGRHQNPWQEANVAL-------LRENNIPLIRRFSGGGTVYHDLGNLNYSLL 97 (336)
T ss_pred EEEeCCceEEEccCCCcceeccHHH-------HHhcCCeEEEEecCCceEEEecCceeEEEE
Confidence 367899999999997655 344433 556666677777667788899997 65554
No 68
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=39.17 E-value=22 Score=25.95 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=16.4
Q ss_pred cccchhH-HHHHHHHHHHhhh
Q psy10577 32 LNHNSII-EKELKKVEEEMKN 51 (203)
Q Consensus 32 L~~El~~-~~~i~~Le~~~~~ 51 (203)
+++|++. |-.|++||+++.+
T Consensus 31 ~e~eLerCK~sirrLeqevnk 51 (79)
T PF09036_consen 31 IEQELERCKASIRRLEQEVNK 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 9999999999875
No 69
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=38.72 E-value=25 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.5
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
.+.|||+.+.+.+ .+.|++||.|+|
T Consensus 33 AVeVNgeIVpr~~w~~t~LkeGD~IEI 59 (326)
T PRK11840 33 AVERNLEIVPRSEYGQVALEEGDELEI 59 (326)
T ss_pred EEEECCEECCHHHcCccccCCCCEEEE
Confidence 5679999998554 678999999987
No 70
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=37.49 E-value=59 Score=23.80 Aligned_cols=46 Identities=7% Similarity=0.116 Sum_probs=29.6
Q ss_pred cCCCCeEECCEEecCCCceecCCCCEEEE--CCEEEEEEeChHHHHHHHcC
Q psy10577 133 EGKRPIYVDGRPIIASNKYKLNHNSIIEI--AGLHFTFLVNQSLIQSLRAD 181 (203)
Q Consensus 133 lGsng~~VNG~~i~~g~~~~L~~gd~Iei--g~~~f~F~~n~~~v~~ir~~ 181 (203)
++..|+++||..|.+ --=-||..+++ |+..-+|.+-.+--.++|+.
T Consensus 21 l~~~GV~~ngrlV~T---~F~fDG~~l~~~~G~~~~~y~~~~~~~s~mkr~ 68 (79)
T PF11012_consen 21 LNESGVFRNGRLVAT---SFEFDGKTLEYRTGSGTYRYQISGENNSEMKRI 68 (79)
T ss_pred ECCCcEEECCCEEee---EEEECCCEEEEEECCeEEEEEEcCCCchheEEc
Confidence 578899999999983 34457777665 45566666544433344443
No 71
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=36.71 E-value=64 Score=34.50 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=36.0
Q ss_pred eEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECCEE
Q psy10577 118 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAGLH 165 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~ 165 (203)
.++++.. .-+|.-.|. -...+||+++.+++++.++.||+++||...
T Consensus 509 ~~l~f~~--~~~ialtGa~~~~~l~g~~v~~~~~~~v~~G~~L~~g~~~ 555 (1201)
T TIGR02712 509 PTLRFHS--DAVIAITGAPAPATLDGQPVPQWKPITVKAGSTLSIGKIA 555 (1201)
T ss_pred EEEEECC--CcEEEEeCCCCcceECCEEcCCCeEEEECCCCEEEecCCC
Confidence 4455543 345666775 689999999999999999999999999544
No 72
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=36.19 E-value=36 Score=24.40 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=15.4
Q ss_pred CCEEecCCCceecCCCCEEEE
Q psy10577 141 DGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 141 NG~~i~~g~~~~L~~gd~Iei 161 (203)
||+.+. ..+.|+|||+|+|
T Consensus 56 ~~~~vg--~~~~L~dgDvV~I 74 (76)
T cd01669 56 TGRRVG--EDYELKHRDVIKI 74 (76)
T ss_pred CCEEeC--CCcEecCCCEEEE
Confidence 677655 4789999999997
No 73
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=36.11 E-value=44 Score=21.43 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.2
Q ss_pred eEECCEEecCCCceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
..+||+.+.. ..+|.+||.|++
T Consensus 37 ~~vng~~vdl--~~~l~~~~~ve~ 58 (60)
T cd01668 37 AKVNGKLVPL--STVLKDGDIVEI 58 (60)
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 5688888763 478999999885
No 74
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=35.26 E-value=1.2e+02 Score=23.84 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=39.6
Q ss_pred ccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEE
Q psy10577 115 RRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169 (203)
Q Consensus 115 R~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~ 169 (203)
-.||......+|-=.|--+|-+.+.+||+... +..+.||.+.-|...+.|.
T Consensus 52 T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~----~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 52 TKHAIGIESDSGVEILIHIGIDTVKLNGEGFT----SHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred CCCEEEEEeCCCcEEEEEeeeeeeecCCCceE----EEecCCCEEcCCCEEEEEc
Confidence 45888555556766777789999999988654 7789999999999866664
No 75
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.82 E-value=47 Score=18.85 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=14.3
Q ss_pred chhH-HHHHHHHHHHhhhc
Q psy10577 35 NSII-EKELKKVEEEMKNW 52 (203)
Q Consensus 35 El~~-~~~i~~Le~~~~~~ 52 (203)
|+.. |++|+-||++|...
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555 89999999998753
No 76
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.29 E-value=74 Score=18.03 Aligned_cols=20 Identities=15% Similarity=0.637 Sum_probs=14.5
Q ss_pred EEEccCCcEEEEEcCCCCeE
Q psy10577 120 IRMRNNGDFFIANEGKRPIY 139 (203)
Q Consensus 120 I~~~~dg~f~l~dlGsng~~ 139 (203)
|....+|+.|+.|.+.+-+.
T Consensus 7 vav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEETTSEEEEEECCCTEEE
T ss_pred EEEeCCCCEEEEECCCCEEE
Confidence 34457889999998876554
No 77
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.96 E-value=36 Score=32.13 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=22.9
Q ss_pred ceecCCCCEEEECCEEEEEEeC--------hHHHHHHHcCCC
Q psy10577 150 KYKLNHNSIIEIAGLHFTFLVN--------QSLIQSLRADPK 183 (203)
Q Consensus 150 ~~~L~~gd~Ieig~~~f~F~~n--------~~~v~~ir~~~~ 183 (203)
.=.|.||++|+++|..|.|... ..-+++++++.+
T Consensus 233 ~NiL~DGtLIDLCGaTLlWRsa~gL~~~Pt~~~Le~~~~~lN 274 (416)
T PF04710_consen 233 SNILQDGTLIDLCGATLLWRSAEGLAHSPTKKHLEALRQELN 274 (416)
T ss_dssp ESB--TT-EEE-SSSEEEEEEHHHHHHS-CCHHHHHHCHHSS
T ss_pred CcccccccChhhceeeeEecchhhhhcCCcHHHHHHHHHHHh
Confidence 3479999999999999999975 444566666655
No 78
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=32.83 E-value=67 Score=28.19 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCE-EEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGL-HFTFL 169 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~-~f~F~ 169 (203)
.-+.|||+.+.. ....++.||+|.+.|. +|.|.
T Consensus 208 G~V~VNg~~v~~-~s~~v~~gD~IsvrG~Gr~~i~ 241 (257)
T TIGR03069 208 GRLRLNWKTVTQ-PSRELKVGDRLQLRGKGRLEIL 241 (257)
T ss_pred CeEEECCEEcCC-CCCcCCCCCEEEEcCCceEEEE
Confidence 459999999842 2357899999999975 66655
No 79
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=31.78 E-value=1.1e+02 Score=21.22 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=32.8
Q ss_pred ccccceEEEEc-cC-CcEEEE-EcCCCCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 113 VSRRQACIRMR-NN-GDFFIA-NEGKRPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 113 ISR~HA~I~~~-~d-g~f~l~-dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
+||.+++|++= .+ |.=+|. +-|..=+||.-.-+....-..|..|+.|++.
T Consensus 1 ~~~~~G~Vk~f~~~kGyGFI~~~~g~~dvfvH~s~l~~~g~~~l~~G~~V~f~ 53 (69)
T PRK09507 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFE 53 (69)
T ss_pred CCccceEEEEEeCCCCcEEEecCCCCeeEEEEeecccccCCCCCCCCCEEEEE
Confidence 68999999983 22 321444 4455568888777664334578888888764
No 80
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=31.68 E-value=1.5e+02 Score=23.17 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=41.5
Q ss_pred cccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 114 SRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 114 SR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
.-+||......+|-=.|--.|-..+.+||+... ...+.||.+.-|...+.|..
T Consensus 51 ~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~----~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 51 PTKHAFGIESDSGVEILIHIGIDTVKLNGEGFT----SHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred cCCCEEEEEeCCCcEEEEEeeeceeecCCCceE----EEecCCCEEcCCCEEEEEcH
Confidence 357888655556766777799999999988654 77899999999988777754
No 81
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=31.60 E-value=56 Score=23.14 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=17.5
Q ss_pred eEECCEEecCCCceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
+.||+..+. ...+|++||.|-|
T Consensus 53 ~aVN~~~~~--~~~~l~dgDeVai 74 (81)
T PRK11130 53 AAVNQTLVS--FDHPLTDGDEVAF 74 (81)
T ss_pred EEECCEEcC--CCCCCCCCCEEEE
Confidence 788987764 4568999999876
No 82
>KOG3063|consensus
Probab=29.00 E-value=72 Score=28.48 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=41.5
Q ss_pred ccccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 111 WKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 111 ~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
..=||+|+.++.+ +|. .-++++|-+|+-+..--.+.|++|-.++-.|+...|.-
T Consensus 20 ~~e~Rk~v~~k~e-~g~-----~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiG 73 (301)
T KOG3063|consen 20 NEESRKQVDMKTE-DGK-----KEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIG 73 (301)
T ss_pred Cchhheecccccc-CCc-----eeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEE
Confidence 4568999999876 564 45688999999886434578999999888887777664
No 83
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=28.68 E-value=97 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCeEECCEEecCCCceecCCCCEEEEC--CEEEEEEe
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIA--GLHFTFLV 170 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig--~~~f~F~~ 170 (203)
.-+.|||++..|+..+ +.||.|.|. ...+.+.+
T Consensus 34 G~V~vnG~~~Kps~~V--~~gd~l~v~~~~~~~~v~V 68 (133)
T PRK10348 34 GKVHYNGQRSKPSKIV--ELNATLTLRQGNDERTVIV 68 (133)
T ss_pred CCEEECCEECCCCCcc--CCCCEEEEEECCEEEEEEE
Confidence 3488999998787665 578888775 45555554
No 84
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=28.14 E-value=3.3e+02 Score=22.41 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=42.0
Q ss_pred EEEccCCcEEEEEcC-C-CCeEECCEEecCCCceecCCCCEEEEC-------CEEEEEEeChHHHHHHHcC
Q psy10577 120 IRMRNNGDFFIANEG-K-RPIYVDGRPIIASNKYKLNHNSIIEIA-------GLHFTFLVNQSLIQSLRAD 181 (203)
Q Consensus 120 I~~~~dg~f~l~dlG-s-ng~~VNG~~i~~g~~~~L~~gd~Ieig-------~~~f~F~~n~~~v~~ir~~ 181 (203)
+...+++.|.+.|.. . .=..|-|+.-. .+.+..||+|.+. ...++|....+-+++|++.
T Consensus 39 ~~~LGn~~f~V~c~dG~~rLa~I~GKmRK---~IWI~~GD~VlVel~~yd~~KgdIi~Ry~~devr~Lk~~ 106 (155)
T PTZ00329 39 LRMLGNGRLEAYCFDGVKRLCHIRGKMRK---RVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQH 106 (155)
T ss_pred EEEcCCCEEEEEECCCCEEEEEeecccee---eEEecCCCEEEEeccCCCCCEEEEEEEcCHHHHHHHHHc
Confidence 334466777777652 2 34455555443 5888899988886 3578999999999999987
No 85
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=27.95 E-value=66 Score=27.19 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=28.1
Q ss_pred ccccceEEEEccCCcEEEEEcCCCCeEECCEEec-CCCceecCCCCEEEECCE
Q psy10577 113 VSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 113 ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~-~g~~~~L~~gd~Ieig~~ 164 (203)
.||.+|.-... .| -++|||+.+. | ...++.||+|++.+.
T Consensus 106 ~SR~~arqlI~-~G----------~V~VNgk~v~~p--s~~v~~GD~I~v~~~ 145 (203)
T PRK05327 106 PTRRQARQLVS-HG----------HILVNGKKVNIP--SYRVKPGDVIEVREK 145 (203)
T ss_pred CCHHHHHHHHH-CC----------cEEECCEEECCC--CcCCCCCCEEEECCc
Confidence 56666655443 22 4899999986 4 457889999999875
No 86
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=27.72 E-value=79 Score=19.34 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=16.4
Q ss_pred eEECCEEecCCCceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
..+||+.+. -..+|.+||.|+|
T Consensus 37 ~~vn~~~~~--l~~~l~~~~~i~~ 58 (60)
T cd01616 37 ALVNGQLVD--LSYTLQDGDTVSI 58 (60)
T ss_pred EEECCEECC--CCcCcCCCCEEEE
Confidence 358888765 3578899998876
No 87
>KOG3842|consensus
Probab=27.39 E-value=40 Score=31.20 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=25.7
Q ss_pred ceecCCCCEEEECCEEEEEEeC--------hHHHHHHHcCCC
Q psy10577 150 KYKLNHNSIIEIAGLHFTFLVN--------QSLIQSLRADPK 183 (203)
Q Consensus 150 ~~~L~~gd~Ieig~~~f~F~~n--------~~~v~~ir~~~~ 183 (203)
.-.|+||++|+++|..|.+... ..-++++|++.+
T Consensus 246 tN~LQDGsLIDLCGATlLWRta~GL~~sPt~k~lE~~~~~iN 287 (429)
T KOG3842|consen 246 TNVLQDGSLIDLCGATLLWRTADGLEHSPTMKHLEALRQEIN 287 (429)
T ss_pred cccccccchhhhccceeEEecccccccCccHHHHHHHHHHHh
Confidence 4479999999999999999875 344566666544
No 88
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=26.96 E-value=1.8e+02 Score=24.03 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=41.2
Q ss_pred ccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 115 RRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 115 R~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
=.||......+|-=.|--.|-..+.+||+... +..+.||.+.-|...+.|..
T Consensus 74 T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~----~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 74 TNHAFSIESDSGVELFVHFGIDTVELKGEGFK----RIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred CCCEEEEEeCCCcEEEEEEeecccccCCCceE----EEecCCCEEeCCCEEEEEcH
Confidence 36998655567766777799999999998654 77899999999998777754
No 89
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=25.98 E-value=2.2e+02 Score=19.54 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=30.7
Q ss_pred ccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 115 RRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 115 R~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
++...|++. .|.-+|...|. .....+.+|+...|..|..|-+.
T Consensus 15 ~~~~~l~v~-~G~vWlT~~g~----~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 15 AAGQRLRVE-SGRVWLTREGD----PDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred CCCcEEEEc-cccEEEECCCC----CCCEEECCCCEEEeCCCCEEEEE
Confidence 445567776 57888887773 45677778888888888777654
No 90
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional
Probab=25.62 E-value=1.1e+02 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=30.1
Q ss_pred cccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEE
Q psy10577 112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLH 165 (203)
Q Consensus 112 ~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~ 165 (203)
..||+.|.-.+. .| .+.|||+.+.+|..+...+.|.|.+.+..
T Consensus 14 ~~SRr~a~~lI~-~G----------~V~VNG~~~~~g~~V~~~~~d~I~v~g~~ 56 (289)
T PRK10700 14 HGSRREIESIIE-AG----------RVSVDGKIATLGDRVEVTPGLKIRIDGHL 56 (289)
T ss_pred CCCHHHHHHHHH-cC----------CEEECCEeccCCCEeCCCCCeEEEECCEE
Confidence 356666655443 23 48999998888887776777889888743
No 91
>PF08130 Antimicrobial18: Type A lantibiotic family; InterPro: IPR012519 This family consists of the type A lantibiotic peptides. Both Pep5 and epicidin-280 are ribosomally-synthesised antimicrobial peptides produced by Gram-positive bacteria that are characterised by the presence of lanthionine and/or methyllanthionine residues. The lantibiotics family has a highly specific activity against multi- drug resistant bacteria and has potential to be utilised in a wide range of medical applications [,].
Probab=25.34 E-value=38 Score=23.35 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=24.8
Q ss_pred CCCCccccccceEEEEccCCcEEEEEcCCCCe
Q psy10577 107 EGPAWKVSRRQACIRMRNNGDFFIANEGKRPI 138 (203)
Q Consensus 107 eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~ 138 (203)
.|++-++||.+|.-.+...--|.|.+.|+++.
T Consensus 28 ~g~ai~~s~~~C~~t~k~T~~~TvSC~~k~~C 59 (60)
T PF08130_consen 28 AGPAIKASRKVCKKTLKATRIFTVSCKGKNNC 59 (60)
T ss_pred cCceeeehhhhcccccceeEEEEEEecccCCC
Confidence 46778999999997666555678999998753
No 92
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=25.33 E-value=55 Score=22.12 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=16.9
Q ss_pred eEECCEEecCCCc---eecCCCCEEEE
Q psy10577 138 IYVDGRPIIASNK---YKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~~---~~L~~gd~Iei 161 (203)
.+.||+++.+.+. +-|.+||+|++
T Consensus 44 l~fdG~~L~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 44 LIFDGKRLDPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEETTEEE-TTSCHHHHT-STTEEEEE
T ss_pred EEECCEEcCCCCCHHHCCCCCCCEEEE
Confidence 5678888887763 57999999985
No 93
>PLN00208 translation initiation factor (eIF); Provisional
Probab=25.31 E-value=3.8e+02 Score=21.86 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=42.5
Q ss_pred EEEccCCcEEEEEcC-C-CCeEECCEEecCCCceecCCCCEEEEC-------CEEEEEEeChHHHHHHHcC
Q psy10577 120 IRMRNNGDFFIANEG-K-RPIYVDGRPIIASNKYKLNHNSIIEIA-------GLHFTFLVNQSLIQSLRAD 181 (203)
Q Consensus 120 I~~~~dg~f~l~dlG-s-ng~~VNG~~i~~g~~~~L~~gd~Ieig-------~~~f~F~~n~~~v~~ir~~ 181 (203)
+...+++.|.++|.. . .=..|-|+.-. .+.+..||.|.+. ...++|....+-+++||+.
T Consensus 39 ~~~lGn~~~~V~c~dG~~rLa~IpGKmRK---rIWI~~GD~VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~ 106 (145)
T PLN00208 39 LRMLGNGRCEALCIDGTKRLCHIRGKMRK---KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY 106 (145)
T ss_pred EEEcCCCEEEEEECCCCEEEEEEecccee---eEEecCCCEEEEEccCCCCCEEEEEEEcCHHHHHHHHHc
Confidence 344466777777763 2 34555555543 6889999998885 3578999999999999987
No 94
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=77 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.5
Q ss_pred CeEECCEEecCCCceecCCCCEEEECCE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig~~ 164 (203)
-++|||+.+. ....|+.||+|++.-.
T Consensus 38 ~v~vNg~~v~--~~~~l~~gd~i~~~~~ 63 (289)
T COG0564 38 RVRVNGKKVK--PSYKLKPGDVVRIPLP 63 (289)
T ss_pred CEEECCEEcc--CCeeeCCCCEEEEecc
Confidence 4999999998 5789999999999853
No 95
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=23.04 E-value=1.2e+02 Score=26.94 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCE-EEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGL-HFTFL 169 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~-~f~F~ 169 (203)
.-++|||+.+.. -...++.||+|.+-|. +|.|.
T Consensus 216 g~V~vN~~~v~~-~s~~v~~gD~isiRG~GR~~i~ 249 (267)
T PLN00051 216 GDVRVNWREVTK-NGTTLKTGDVVSVSGKGRLEVG 249 (267)
T ss_pred CcEEECCEEcCC-CCCCCCCCCEEEEeeCCEEEEE
Confidence 358999999853 2468999999999975 66665
No 96
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=22.94 E-value=1.4e+02 Score=20.62 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=17.3
Q ss_pred CcEEEEEcCCCCeEECCEEecCCCceecCC
Q psy10577 126 GDFFIANEGKRPIYVDGRPIIASNKYKLNH 155 (203)
Q Consensus 126 g~f~l~dlGsng~~VNG~~i~~g~~~~L~~ 155 (203)
+..+.-..|++-+++||+.+.-..+..+.+
T Consensus 35 ~~~i~~~~~~~~~~~ng~~~~l~~~~~~~~ 64 (93)
T PF07833_consen 35 KKSIKLKVGSNEATVNGKKITLSAPPVIIN 64 (93)
T ss_dssp TEEEEE-TT-SEEEETTEEEE-SS-BEEET
T ss_pred eceeeecCCCceeeeeccccccccCCEEeC
Confidence 344445578888999998887555444444
No 97
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=22.81 E-value=3e+02 Score=22.66 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=41.7
Q ss_pred cceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 116 RQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 116 ~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
+||......+|-=.|--.|=..+-+||+.. ....+.||.+..|+..+.|-+
T Consensus 60 kHAigi~t~~GvEiLiHiGiDTV~L~GegF----~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 60 KHAIGIETDEGVEILIHIGIDTVKLNGEGF----ESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred CcEEEEEcCCCcEEEEEeceeeEEECCcce----EEEeeCCCEEccCCEEEEECH
Confidence 688887666676667778988899999855 488999999999999888864
No 98
>PRK06789 flagellar motor switch protein; Validated
Probab=22.55 E-value=72 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=18.6
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
=++|||+.+..|+-+...+.-=|+|
T Consensus 45 dI~vNg~lia~GEvVvv~~~fGVRI 69 (74)
T PRK06789 45 RLMLENEEIGTGKILTKNGKMYVEI 69 (74)
T ss_pred EEEECCEEEeEEeEEEECCEEEEEE
Confidence 4899999999998777766444433
No 99
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=22.55 E-value=47 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=14.1
Q ss_pred EcCCCCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 132 NEGKRPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 132 dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
|+..+.+=|=|+.+.. ...|++||.|||-.
T Consensus 43 dl~~~~vGIfGk~~~~--d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 43 DLEKNKVGIFGKLVKL--DTVLRDGDRVEIYR 72 (84)
T ss_dssp -TTTSEEEEEE-S--T--T-B--TT-EEEEE-
T ss_pred CcccceeeeeeeEcCC--CCcCCCCCEEEEec
Confidence 3444444444777663 57899999999964
No 100
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3L6I_B.
Probab=22.16 E-value=1.2e+02 Score=24.29 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=30.0
Q ss_pred ceEEEeecCceEECCCCCCC---CeeeecC--CC-CC--CccccccceEEEEc-cCCcEEEEEc
Q psy10577 79 AVRYLMKFRDVTLGRSTADH---SVDIDLS--LE-GP--AWKVSRRQACIRMR-NNGDFFIANE 133 (203)
Q Consensus 79 ~~~~~m~~~~i~IGR~s~~~---~vDIDLs--~e-g~--~~~ISR~HA~I~~~-~dg~f~l~dl 133 (203)
...+.+....+.|||...+- ..|.++. .. ++ +..--.--+...|+ .+|.+||.++
T Consensus 27 ~~~v~l~~~~v~ig~~~~~~i~l~~~~~~~i~~~~~~~~~~~~l~~s~~p~YD~~~~avyL~~l 90 (152)
T PF07273_consen 27 PADVTLSNPKVQIGRDDPDRIALSADADVSINSPLGPYPASGKLTLSGQPRYDAEKGAVYLKDL 90 (152)
T ss_dssp EEEEEEEEEEEEESSSSTT-EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCceEecCCCCCCEEEEEEEEEEEEeccCCCcceEEEEEEEEEEEEecCCCeEEEccc
Confidence 35788999999999887662 2233322 11 11 22222334455555 3466777664
No 101
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=21.99 E-value=87 Score=26.41 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=30.1
Q ss_pred cccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCEEE
Q psy10577 112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHF 166 (203)
Q Consensus 112 ~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f 166 (203)
..||.+|.-.... | -++|||+.+.. -...+..||+|.+.+...
T Consensus 102 ~~SR~~ArqlI~~-G----------~V~VNgk~v~~-ps~~V~~GD~I~V~~~~~ 144 (200)
T TIGR01017 102 APTRFAARQLVSH-G----------HILVNGKKVDI-PSYQVRPGDIISIKEKSK 144 (200)
T ss_pred CCCHHHHHHHHHC-C----------CEEECCEEeCC-CCCCCCCCCEEEEeeCcc
Confidence 4577777665542 3 38899999852 145788999999987654
No 102
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=21.42 E-value=1.4e+02 Score=26.68 Aligned_cols=26 Identities=8% Similarity=0.524 Sum_probs=20.4
Q ss_pred CeEECCEEecCCCceecCCCCEEEECCE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig~~ 164 (203)
.++|||+.+.++.+ +..||.|.+.+.
T Consensus 32 ~V~VNGk~v~~~~~--V~~gD~V~v~g~ 57 (290)
T PRK10475 32 NVFINGKRATIGDQ--VKAGDVVKVNGQ 57 (290)
T ss_pred cEEECCEEccCCCC--cCCCCEEEECCE
Confidence 48999998876554 578899999864
No 103
>KOG3121|consensus
Probab=21.29 E-value=1.1e+02 Score=25.44 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=24.2
Q ss_pred CccccccceEEEEccCCcEEEEEcCC----CCeEECCEE--ecCCCceecCCCCEEEE
Q psy10577 110 AWKVSRRQACIRMRNNGDFFIANEGK----RPIYVDGRP--IIASNKYKLNHNSIIEI 161 (203)
Q Consensus 110 ~~~ISR~HA~I~~~~dg~f~l~dlGs----ng~~VNG~~--i~~g~~~~L~~gd~Iei 161 (203)
..+|||+|+.- +..+..| .|| +|+.+-|-. +..|.-+.|+..+.|+=
T Consensus 19 GNKVsr~~vlc---GsQNI~l--nGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRP 71 (184)
T KOG3121|consen 19 GNKVSRKHVLC---GSQNILL--NGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRP 71 (184)
T ss_pred CCcccceeEee---ccceEEE--cCcEEEeeCcEEecccccceEcceEEeccccccCC
Confidence 36999999852 1111111 111 344443322 33555677777777753
No 104
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=21.04 E-value=1e+02 Score=26.17 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=27.8
Q ss_pred cccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCE
Q psy10577 112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 112 ~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~ 164 (203)
..||.+|.-... .| -++|||+.+.. -.+.+..||.|++.+.
T Consensus 101 ~~SR~~ArqlI~-~G----------~V~VNGk~v~~-ps~~Vk~GD~I~V~~~ 141 (201)
T CHL00113 101 APTIPAARQLVN-HG----------HILVNGRIVDI-PSYRCKPKDIITVKDK 141 (201)
T ss_pred CCCHHHHHHHHH-CC----------cEEECCEEecC-ccccCCCCCEEEEccc
Confidence 346666665444 23 38899999852 2467889999999764
No 105
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.93 E-value=79 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=19.1
Q ss_pred cCCCCeEECCEEecCCCceecCCCCEEEECCEE
Q psy10577 133 EGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLH 165 (203)
Q Consensus 133 lGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~~ 165 (203)
+-+|.+=|=|+++.. ...|+|||.|||-.-.
T Consensus 47 l~~n~~GI~~k~~kl--~~~l~dgDRVEIyRPL 77 (99)
T COG2914 47 LHENKVGIYSKPVKL--DDELHDGDRVEIYRPL 77 (99)
T ss_pred ccccceeEEccccCc--cccccCCCEEEEeccc
Confidence 334433333556554 3459999999997654
No 106
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=1.6e+02 Score=22.52 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.1
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC--CEEEEEEe
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA--GLHFTFLV 170 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig--~~~f~F~~ 170 (203)
-+.|||+...|+ ..++.||+|+|. ...+.+.+
T Consensus 35 rV~vNG~~aKpS--~~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 35 RVKVNGQRAKPS--KEVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred eEEECCEEcccc--cccCCCCEEEEEeCCcEEEEEE
Confidence 488999999874 467888888876 44555544
No 107
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=20.56 E-value=1.5e+02 Score=24.00 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=11.1
Q ss_pred ecCCCCEEEECCEEEEE
Q psy10577 152 KLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 152 ~L~~gd~Ieig~~~f~F 168 (203)
..++|+.++.|...|.+
T Consensus 139 ~v~~g~~V~~Gq~L~~i 155 (156)
T TIGR00531 139 LVENGQPVEYGQPLIVI 155 (156)
T ss_pred EeCCCCEECCCCEEEEE
Confidence 45677777777766654
No 108
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=20.22 E-value=1.7e+02 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=21.7
Q ss_pred CCeEECCEEe-cCCCceecCCCCEEEECCEE
Q psy10577 136 RPIYVDGRPI-IASNKYKLNHNSIIEIAGLH 165 (203)
Q Consensus 136 ng~~VNG~~i-~~g~~~~L~~gd~Ieig~~~ 165 (203)
.|.+..+..+ ..|+.++|++|+.|+|-...
T Consensus 59 ~g~l~~~~~v~~~~e~~~L~~ge~IRi~K~l 89 (185)
T PF10949_consen 59 KGILFDQGIVSIDGEQIPLSNGESIRIRKKL 89 (185)
T ss_pred EEEEecCceEEeCCeEEecCCCCEEEEeecc
Confidence 4566665455 45678899999999998643
Done!