Query psy10577
Match_columns 203
No_of_seqs 170 out of 479
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:59:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqs_A Adenylate cyclase-like 99.8 6E-18 2.1E-22 127.3 11.3 94 70-171 5-102 (106)
2 3po8_A RV0020C protein, putati 99.8 8.2E-18 2.8E-22 125.2 11.2 87 74-171 10-97 (100)
3 4h87_A Kanadaptin; FHA domain 99.7 1.6E-17 5.3E-22 130.2 12.7 94 70-170 21-128 (130)
4 3va4_A Mediator of DNA damage 99.7 6.8E-18 2.3E-22 132.7 10.5 94 70-170 25-125 (132)
5 1uht_A Expressed protein; FHA 99.7 3.5E-18 1.2E-22 130.8 8.2 92 71-169 14-109 (118)
6 2pie_A E3 ubiquitin-protein li 99.7 8.7E-18 3E-22 132.3 10.6 110 71-183 9-129 (138)
7 1g6g_A Protein kinase RAD53; b 99.7 1.3E-17 4.6E-22 129.4 10.6 83 87-175 36-124 (127)
8 2xt9_B Putative signal transdu 99.7 3.3E-17 1.1E-21 125.0 12.5 92 70-172 12-106 (115)
9 1g3g_A Protien kinase SPK1; FH 99.7 2.3E-17 8E-22 133.6 11.1 104 71-180 35-157 (164)
10 2kb3_A Oxoglutarate dehydrogen 99.7 3.7E-17 1.3E-21 130.1 12.0 92 70-172 47-141 (143)
11 2csw_A Ubiquitin ligase protei 99.7 5.3E-18 1.8E-22 134.6 6.8 109 77-188 24-142 (145)
12 1gxc_A CHK2, CDS1, serine/thre 99.7 3.3E-17 1.1E-21 130.6 10.6 92 76-170 37-140 (149)
13 1mzk_A Kinase associated prote 99.7 2.3E-17 7.8E-22 130.0 9.4 94 70-170 8-118 (139)
14 1r21_A Antigen KI-67; beta san 99.7 6.5E-17 2.2E-21 125.4 11.0 93 70-172 13-109 (128)
15 2jpe_A Nuclear inhibitor of pr 99.7 5.7E-18 1.9E-22 133.5 4.2 95 70-170 35-134 (140)
16 2kfu_A RV1827 PThr 22; FHA dom 99.7 1.5E-16 5.2E-21 129.1 12.1 92 70-172 56-150 (162)
17 3hx1_A SLR1951 protein; P74513 99.7 1.7E-16 5.9E-21 124.2 11.3 93 67-169 8-112 (131)
18 1wln_A Afadin; beta sandwich, 99.7 1.7E-16 6E-21 122.0 10.3 95 69-172 11-115 (120)
19 1lgp_A Cell cycle checkpoint p 99.7 8.7E-17 3E-21 122.5 8.4 79 80-164 17-96 (116)
20 2jqj_A DNA damage response pro 99.7 3.3E-16 1.1E-20 124.9 11.7 85 79-171 29-122 (151)
21 3els_A PRE-mRNA leakage protei 99.7 5.2E-16 1.8E-20 125.4 11.1 100 66-169 28-156 (158)
22 3oun_A Putative uncharacterize 99.7 2.9E-16 1E-20 127.1 9.7 83 76-169 74-157 (157)
23 3fm8_A Kinesin-like protein KI 99.6 8.8E-16 3E-20 119.7 11.2 95 66-170 23-123 (124)
24 4ejq_A Kinesin-like protein KI 99.6 1E-14 3.5E-19 117.1 15.6 106 68-180 37-152 (154)
25 1dmz_A Protein (protein kinase 99.6 4.4E-16 1.5E-20 125.5 6.7 83 81-170 19-122 (158)
26 3elv_A PRE-mRNA leakage protei 99.6 4.8E-15 1.6E-19 124.6 12.0 96 70-169 79-203 (205)
27 1qu5_A Protein kinase SPK1; FH 99.6 7.9E-16 2.7E-20 127.0 6.0 83 81-170 43-146 (182)
28 2ff4_A Probable regulatory pro 99.6 6.9E-15 2.4E-19 132.3 11.6 92 71-172 289-382 (388)
29 3kt9_A Aprataxin; FHA domain, 99.4 1.1E-12 3.8E-17 99.2 9.3 84 77-169 12-97 (102)
30 2brf_A Bifunctional polynucleo 99.3 3.8E-12 1.3E-16 97.4 7.8 84 77-169 17-105 (110)
31 4egx_A Kinesin-like protein KI 99.3 1.7E-11 5.7E-16 101.2 11.3 105 68-179 67-181 (184)
32 3huf_A DNA repair and telomere 99.3 1E-11 3.4E-16 110.4 8.0 79 81-164 15-105 (325)
33 1yj5_C 5' polynucleotide kinas 99.2 1.9E-11 6.4E-16 97.3 8.5 92 70-170 7-106 (143)
34 1ujx_A Polynucleotide kinase 3 99.1 3.1E-11 1.1E-15 93.5 4.0 85 76-169 23-112 (119)
35 3uv0_A Mutator 2, isoform B; F 99.1 3.1E-10 1.1E-14 85.4 8.2 85 76-172 10-101 (102)
36 3i6u_A CDS1, serine/threonine- 99.1 2E-10 7E-15 102.7 7.8 95 72-169 13-119 (419)
37 4a0e_A YSCD, type III secretio 98.8 1E-08 3.6E-13 79.7 8.8 91 71-172 6-99 (123)
38 1wv3_A Similar to DNA segregat 98.5 2.3E-07 7.9E-12 78.9 7.2 92 68-172 70-170 (238)
39 2cu3_A Unknown function protei 84.1 0.74 2.5E-05 30.5 2.9 25 137-161 31-57 (64)
40 2k5p_A THis protein, thiamine- 82.0 0.59 2E-05 32.7 1.7 27 136-162 35-63 (78)
41 2kl0_A Putative thiamin biosyn 80.6 0.5 1.7E-05 32.6 1.0 25 137-161 32-58 (73)
42 1ryj_A Unknown; beta/alpha pro 79.1 1.8 6E-05 29.2 3.4 22 138-161 42-63 (70)
43 1tyg_B YJBS; alpha beta barrel 78.5 1.6 5.6E-05 31.2 3.2 25 137-161 54-80 (87)
44 2q5w_D Molybdopterin convertin 78.3 1.8 6.1E-05 29.2 3.2 23 137-161 48-70 (77)
45 2hj1_A Hypothetical protein; s 77.1 0.81 2.8E-05 33.5 1.2 27 135-163 58-84 (97)
46 2l52_A Methanosarcina acetivor 77.0 1.1 3.6E-05 32.4 1.8 28 134-161 63-92 (99)
47 3hvz_A Uncharacterized protein 76.8 1.6 5.6E-05 30.5 2.7 25 136-162 42-66 (78)
48 1f0z_A THis protein; ubiquitin 75.4 0.96 3.3E-05 30.1 1.1 25 137-161 33-59 (66)
49 2g1e_A Hypothetical protein TA 72.0 2 6.9E-05 29.7 2.2 25 137-161 57-83 (90)
50 3rpf_C Molybdopterin convertin 71.9 2.6 8.8E-05 28.5 2.7 25 136-161 43-67 (74)
51 1rws_A Hypothetical protein PF 71.5 1.3 4.4E-05 30.5 1.0 24 136-161 47-70 (77)
52 1p9k_A ORF, hypothetical prote 67.8 4 0.00014 27.9 3.0 30 137-168 47-77 (79)
53 3po0_A Small archaeal modifier 67.5 4.2 0.00014 28.1 3.1 23 137-161 60-82 (89)
54 3dwg_C 9.5 kDa culture filtrat 66.7 3.9 0.00013 28.6 2.8 25 137-161 60-86 (93)
55 1fm0_D Molybdopterin convertin 66.3 4.9 0.00017 27.1 3.1 23 137-161 52-74 (81)
56 1vjk_A Molybdopterin convertin 63.9 3.9 0.00013 29.1 2.4 23 137-161 69-91 (98)
57 2k9x_A Tburm1, uncharacterized 63.7 2.9 0.0001 31.1 1.7 24 138-161 70-95 (110)
58 1wgk_A Riken cDNA 2900073H19 p 60.5 3.1 0.00011 31.0 1.3 24 138-161 76-101 (114)
59 3mml_A Allophanate hydrolase s 60.4 12 0.00041 32.9 5.3 45 118-163 63-108 (318)
60 2k6p_A Uncharacterized protein 59.8 7.4 0.00025 27.1 3.2 24 137-162 27-50 (92)
61 1ygs_A SMAD4; tumor suppressor 59.7 9.5 0.00033 32.1 4.3 43 118-160 69-118 (234)
62 3u7z_A Putative metal binding 58.9 7.1 0.00024 28.7 3.0 24 138-161 71-95 (101)
63 2kmm_A Guanosine-3',5'-BIS(dip 57.9 6.5 0.00022 25.8 2.5 24 137-162 38-61 (73)
64 2bps_A YUKD protein; ubiquitin 57.8 5.1 0.00017 28.3 2.0 31 128-161 50-80 (81)
65 2l32_A Small archaeal modifier 56.1 5.2 0.00018 27.4 1.8 23 137-162 38-60 (74)
66 2qjl_A URM1, ubiquitin-related 54.7 8.3 0.00028 27.4 2.8 24 138-161 67-92 (99)
67 1wv3_A Similar to DNA segregat 54.3 26 0.00089 28.9 6.2 49 72-130 4-54 (238)
68 1dd1_A SMAD4; B-sheet sandwich 54.1 13 0.00044 31.9 4.3 28 118-145 103-130 (268)
69 1v8c_A MOAD related protein; r 51.1 9 0.00031 30.3 2.7 26 137-162 54-81 (168)
70 3oep_A Putative uncharacterize 48.0 17 0.00059 33.7 4.4 44 117-162 280-324 (494)
71 1dm9_A Hypothetical 15.5 KD pr 45.9 17 0.0006 27.4 3.5 32 137-170 35-68 (133)
72 1khx_A SMAD2; TGF-beta signali 45.8 21 0.00071 29.9 4.2 78 81-160 49-143 (227)
73 3ega_A Pellino-2, protein pell 39.7 18 0.00061 30.9 2.9 27 148-174 223-249 (263)
74 3vwc_A Serine protease inhibit 36.6 64 0.0022 25.2 5.5 61 81-146 6-73 (149)
75 3gge_A PDZ domain-containing p 35.6 28 0.00097 25.0 3.1 54 128-183 20-78 (95)
76 3gmj_D Protein mothers against 33.9 37 0.0013 28.7 4.0 79 81-160 66-161 (245)
77 2lq4_p Lysophosphatidic acid r 33.8 8.4 0.00029 26.3 -0.1 19 39-57 19-37 (80)
78 1c05_A Ribosomal protein S4 de 32.6 35 0.0012 26.5 3.4 40 112-164 63-103 (159)
79 2eki_A DRG 1, developmentally- 32.2 15 0.00051 26.7 1.0 23 138-162 63-85 (93)
80 1ksk_A Ribosomal small subunit 32.1 29 0.00099 28.1 3.0 31 137-169 29-60 (234)
81 3va7_A KLLA0E08119P; carboxyla 31.8 40 0.0014 34.6 4.4 46 117-164 536-582 (1236)
82 3h43_A Proteasome-activating n 28.9 48 0.0016 23.2 3.3 44 116-163 31-76 (85)
83 1k1f_A Breakpoint cluster regi 28.2 27 0.00093 24.0 1.7 20 32-51 31-51 (72)
84 1vio_A Ribosomal small subunit 23.7 41 0.0014 27.4 2.4 28 137-166 28-56 (243)
85 2vqe_D 30S ribosomal protein S 23.2 55 0.0019 26.6 3.1 40 112-164 111-151 (209)
86 2cqj_A BRMS2, U3 small nucleol 22.3 17 0.00058 24.6 -0.2 25 138-162 35-60 (71)
87 1wwt_A Threonyl-tRNA synthetas 22.1 44 0.0015 22.7 2.0 24 137-162 48-71 (88)
No 1
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.76 E-value=6e-18 Score=127.33 Aligned_cols=94 Identities=23% Similarity=0.344 Sum_probs=75.6
Q ss_pred ceEEEEEeec--eEEEeecC-ceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEe
Q psy10577 70 QTYAVLRGRA--VRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPI 145 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~-~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i 145 (203)
..|.++.|.. ..|.+... .++|||+..++ ||-|. ...|||+||+|.++.++.|+|+|+|+ |||||||+++
T Consensus 5 ~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~--di~l~----d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i 78 (106)
T 3gqs_A 5 FLLKVLAGANIGAEFHLDSGKTYIVGSDPQVA--DIVLS----DMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKI 78 (106)
T ss_dssp EEEEECC-CCTTCEEEECTTCEEEEESCTTTC--SEECC----CTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEEC
T ss_pred EEEEEEeCCCCcEEEEECCCCEEEEeECCCcC--CEEeC----CCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEEC
Confidence 3566777654 47888875 58999987433 44442 37899999999998677899999976 9999999999
Q ss_pred cCCCceecCCCCEEEECCEEEEEEeC
Q psy10577 146 IASNKYKLNHNSIIEIAGLHFTFLVN 171 (203)
Q Consensus 146 ~~g~~~~L~~gd~Ieig~~~f~F~~n 171 (203)
.+ +++|++||+|+||...|.|...
T Consensus 79 ~~--~~~L~~Gd~i~~G~~~~~~~~~ 102 (106)
T 3gqs_A 79 EH--QSTLSANQVVALGTTLFLLVDY 102 (106)
T ss_dssp SS--EEECCTTCCEEETTEEEEEEEE
T ss_pred CC--CeECCCCCEEEECCEEEEEEcc
Confidence 85 6899999999999999999753
No 2
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.75 E-value=8.2e-18 Score=125.22 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=73.5
Q ss_pred EEEeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCcee
Q psy10577 74 VLRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYK 152 (203)
Q Consensus 74 vL~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~ 152 (203)
+..|....|.+...+++|||+..+ |+-|. ...|||+||+|.++ ++.|+|+|+|+ |||||||+++. +++
T Consensus 10 ~~~g~g~~~~l~~~~~~IGR~~~~---di~l~----d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vng~~i~---~~~ 78 (100)
T 3po8_A 10 LDDGSGRTYQLREGSNIIGRGQDA---QFRLP----DTGVSRRHLEIRWD-GQVALLADLNSTNGTTVNNAPVQ---EWQ 78 (100)
T ss_dssp ECSSSCCEEECCSEEEEEESSTTC---SEECC----CTTSCSSCEEEEEC-SSCEEEEECSCSSCCEETTEECS---EEE
T ss_pred EECCCCcEEEECCCCEEEeCCCCC---CEECC----CCCcChhhCEEEEe-CCEEEEEECCCCCCEEECCEECc---eEE
Confidence 334666789999999999998743 45442 36999999999997 56899999975 99999999997 689
Q ss_pred cCCCCEEEECCEEEEEEeC
Q psy10577 153 LNHNSIIEIAGLHFTFLVN 171 (203)
Q Consensus 153 L~~gd~Ieig~~~f~F~~n 171 (203)
|++||.|+||...|.|.+.
T Consensus 79 L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 79 LADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp CCTTCEEEETTEEEEEEEE
T ss_pred CCCCCEEEECCEEEEEEEE
Confidence 9999999999999999874
No 3
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=130.23 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=72.9
Q ss_pred ceEEEEEeec--eEEEeecCc-eEECCCCCCCCeeeecCCCCCCccccccceEEEEc----------cCCcEEEEEcCC-
Q psy10577 70 QTYAVLRGRA--VRYLMKFRD-VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR----------NNGDFFIANEGK- 135 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~~-i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~----------~dg~f~l~dlGs- 135 (203)
..|-|++|.. .++.+..+. ++|||+..+ ||-|. .+.|||+||.|.++ .++.|||+|+||
T Consensus 21 ~~L~v~k~g~~~~~~~L~~~~~~~IGR~~~~---di~l~----~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~St 93 (130)
T 4h87_A 21 YSLETLKGGTILGTRSLKGTSYCLFGRLSGC---DVCLE----HPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGST 93 (130)
T ss_dssp CEEEEEETTEEEEEEECTTCSEEEEESSTTS---SEECC----CTTSCSSCEEEEEBCCCCCC------CCEEEEECSCS
T ss_pred EEEEEEECCeeeeeEEeCCCceEEEcCCcCC---CEEeC----CCCcchhcEEEEEecccCccceeccCCcceEeeCCCC
Confidence 4788888654 367776555 799998643 44442 36899999999763 245799999986
Q ss_pred CCeEECCEEecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
|||||||++|.++.++.|++||+|+||.....|.+
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEETTCSEEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEECCceEEEEE
Confidence 99999999999999999999999999976545543
No 4
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.74 E-value=6.8e-18 Score=132.68 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=79.4
Q ss_pred ceEEEEEeec---eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc-CCcEEEEEcCC-CCeEECCEE
Q psy10577 70 QTYAVLRGRA---VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEGK-RPIYVDGRP 144 (203)
Q Consensus 70 ~~lavL~G~~---~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~-dg~f~l~dlGs-ng~~VNG~~ 144 (203)
..|.++.|.. ..|.+...+++|||+..+ ||-|. ...|||+||+|.++. ++.|+|+|+|+ |||||||++
T Consensus 25 g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~---di~l~----d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~ 97 (132)
T 3va4_A 25 GQLRLFSGTHGPERDFPLYLGKNVVGRSPDC---SVALP----FPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPP 97 (132)
T ss_dssp EEEEECCBTTBSCEEEEECSEEEEEESSTTS---SEECC----CTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTT
T ss_pred EEEEEEeCCCCCceEEEECCCCEEEccCCCC---CEEeC----CCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEE
Confidence 4666777755 689999999999998753 55442 369999999999973 56899999976 999999998
Q ss_pred --ecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 145 --IIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 145 --i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
+.++++++|++||+|+||+..|.|..
T Consensus 98 i~l~~~~~~~L~~GD~I~lG~~~l~f~~ 125 (132)
T 3va4_A 98 RVLPPGVSHRLRDQELILFADFPCQYHR 125 (132)
T ss_dssp EEECTTCCEECCTTCEEEETTEEEEEEE
T ss_pred cccCCCCEEECCCCCEEEECCEEEEEEE
Confidence 67889999999999999999999985
No 5
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.74 E-value=3.5e-18 Score=130.76 Aligned_cols=92 Identities=13% Similarity=0.260 Sum_probs=73.1
Q ss_pred eEEEEEeec--eEEEeec-CceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEec
Q psy10577 71 TYAVLRGRA--VRYLMKF-RDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 146 (203)
Q Consensus 71 ~lavL~G~~--~~~~m~~-~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~ 146 (203)
.|.++.|.. ..|.+.. ..++|||+.+.+ ||-|. ...|||+||+|.++ ++.|+|+|+|+ |||||||+++.
T Consensus 14 ~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~--di~l~----d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGT~vng~~l~ 86 (118)
T 1uht_A 14 RLVFVKGPREGDALDYKPGSTIRVGRIVRGN--EIAIK----DAGISTKHLRIESD-SGNWVIQDLGSSNGTLLNSNALD 86 (118)
T ss_dssp EEEESSSTTTTCBCCBCTTCCEEEESSSTTC--SEECC----SSSSCTTCEEEEEC-SSSEEEECCCCSSCCEESSSBCC
T ss_pred EEEEEeCCCCCcEEEECCCCEEEEcCCCCCC--CEEeC----CCCCchHHeEEEEE-CCEEEEEECCCCCCeEECCEECC
Confidence 344555543 4677875 679999985443 44442 47999999999997 46899999975 99999999999
Q ss_pred CCCceecCCCCEEEECCEEEEEE
Q psy10577 147 ASNKYKLNHNSIIEIAGLHFTFL 169 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~~~f~F~ 169 (203)
++++++|++||+|+||...|.|.
T Consensus 87 ~~~~~~L~~gd~i~lG~~~~~~~ 109 (118)
T 1uht_A 87 PETSVNLGDGDVIKLGEYTSILV 109 (118)
T ss_dssp TTCEEECCTTEEEEETTTEEEEE
T ss_pred CCCeEEcCCCCEEEECCeEEEEE
Confidence 99999999999999999776654
No 6
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.74 E-value=8.7e-18 Score=132.28 Aligned_cols=110 Identities=14% Similarity=0.252 Sum_probs=83.5
Q ss_pred eEEEEE-eec-eEEEee-cCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEec
Q psy10577 71 TYAVLR-GRA-VRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 146 (203)
Q Consensus 71 ~lavL~-G~~-~~~~m~-~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~ 146 (203)
++.+.+ |.. ..|.+. +..++|||+..+ ||.|........|||+||+|.+..+|.|+|+|+|+ |||||||++|.
T Consensus 9 ~w~l~~~G~~~~~~~l~~~~~~~IGR~~~~---di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~ 85 (138)
T 2pie_A 9 SWCLRRVGMSAGWLLLEDGCEVTVGRGFGV---TYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLE 85 (138)
T ss_dssp EEEEEETTCSSCBEEECTTCCEEEESSSSS---SEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECC
T ss_pred cEEEEEeCCCCCEEEecCCCeEEECCCCCC---CEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcC
Confidence 444443 544 367776 778999998743 55553321224599999999996678899999975 99999999999
Q ss_pred CCCceecCCCCEEEECC-------EEEEEEeChHHHHHHHcCCC
Q psy10577 147 ASNKYKLNHNSIIEIAG-------LHFTFLVNQSLIQSLRADPK 183 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~-------~~f~F~~n~~~v~~ir~~~~ 183 (203)
++++++|++||+|.||. +.|.|....+-++.++-..+
T Consensus 86 ~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 129 (138)
T 2pie_A 86 PLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLS 129 (138)
T ss_dssp TTCCEECCTTCEEEESCCCTTCSSCSEEEEEEEEEHHHHGGGBC
T ss_pred CCCcEECCCCCEEEECCCCCCCceEEEEEEecchhhhhhCcccc
Confidence 99999999999999997 56777776666676665443
No 7
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.73 E-value=1.3e-17 Score=129.40 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=70.1
Q ss_pred CceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCCCCEEEECCE--
Q psy10577 87 RDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGL-- 164 (203)
Q Consensus 87 ~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Ieig~~-- 164 (203)
..++|||+..+ ||-|. +.+.|||+||+|.++.+|.|+|+|+++|||||||+++.++++++|++||+|+||..
T Consensus 36 ~~~~IGR~~~~---di~l~---~~~~vSr~Ha~i~~~~~g~~~l~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~~ 109 (127)
T 1g6g_A 36 KVWTFGRNPAC---DYHLG---NISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVE 109 (127)
T ss_dssp EEEEEESSTTS---SEECC---SCTTSCSSCEEEEECTTSCEEEEECCSSCCEETTEECCTTCCEECCTTCEEEECTTSG
T ss_pred CCEEECCCCCC---CEEeC---CCCCCChhHeEEEECCCCcEEEEECCcCCeEECCEEcCCCCeEEcCCCCEEEECCCcc
Confidence 38999999752 55553 12369999999999657889999997799999999999999999999999999964
Q ss_pred ----EEEEEeChHHH
Q psy10577 165 ----HFTFLVNQSLI 175 (203)
Q Consensus 165 ----~f~F~~n~~~v 175 (203)
.|+|.++..+-
T Consensus 110 ~~~i~f~~~~~~~~~ 124 (127)
T 1g6g_A 110 SDILSLVIFINDKFK 124 (127)
T ss_dssp GGCEEEEEEECHHHH
T ss_pred CceEEEEEEeCchhc
Confidence 79999987653
No 8
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.73 E-value=3.3e-17 Score=125.03 Aligned_cols=92 Identities=28% Similarity=0.472 Sum_probs=76.4
Q ss_pred ceEEEEEeec--eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEec
Q psy10577 70 QTYAVLRGRA--VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 146 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~ 146 (203)
..|.++.|.. ..|.+....++|||+..+ ||-|. ...|||+||+|.++ ++.|+|+|+|+ |||||||+++.
T Consensus 12 ~~L~v~~g~~~g~~~~l~~~~~~IGR~~~~---di~l~----d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vng~~i~ 83 (115)
T 2xt9_B 12 ALLVVKRGPNAGSRFLLDQPTTSAGRHPDS---DIFLD----DVTVSRRHAEFRLE-GGEFQVVDVGSLNGTYVNREPVD 83 (115)
T ss_dssp EEEEEEESTTTTCEEEECSSEEEEESSTTS---SEECC----STTSCSSCEEEEEE-TTEEEEEECSCSSCEEETTEECS
T ss_pred EEEEEEeCCCCCeEEEECCCCEEECCCCCC---CEEeC----CcccChhheEEEEE-CCEEEEEECCCCCCeEECCEEcc
Confidence 4666777654 579999999999998743 44442 37999999999997 57899999975 99999999997
Q ss_pred CCCceecCCCCEEEECCEEEEEEeCh
Q psy10577 147 ASNKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
+++|++||+|+||...|.|....
T Consensus 84 ---~~~L~~gd~i~iG~~~l~~~~~~ 106 (115)
T 2xt9_B 84 ---SAVLANGDEVQIGKFRLVFLTGP 106 (115)
T ss_dssp ---EEEECTTCEEEETTEEEEEEC--
T ss_pred ---eEECCCCCEEEECCEEEEEEeCC
Confidence 68999999999999999998654
No 9
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.72 E-value=2.3e-17 Score=133.59 Aligned_cols=104 Identities=15% Similarity=0.264 Sum_probs=82.2
Q ss_pred eEEEEEeec--eEEEeecC-----------ceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCC
Q psy10577 71 TYAVLRGRA--VRYLMKFR-----------DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRP 137 (203)
Q Consensus 71 ~lavL~G~~--~~~~m~~~-----------~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng 137 (203)
.|.++.|.. ..|.+... .++|||+.. .||.|. +.+.|||+||+|.++.+|.|+|+|+++||
T Consensus 35 ~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~---~di~l~---d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 35 RVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPA---CDYHLG---NISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp EEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSS---SSEECC---CCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred EEEEecCCCCCeEEEeccccccccccccCCcEEECCCCC---CCEEeC---CcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 455556654 35666643 899999875 255552 22369999999999657889999996699
Q ss_pred eEECCEEecCCCceecCCCCEEEECCE------EEEEEeChHHHHHHHc
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEIAGL------HFTFLVNQSLIQSLRA 180 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Ieig~~------~f~F~~n~~~v~~ir~ 180 (203)
|||||++|.++++++|++||+|.||.. .|+|.++......+++
T Consensus 109 T~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~~~~~~le~ 157 (164)
T 1g3g_A 109 TWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDKFKQCLEQ 157 (164)
T ss_dssp EEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECHHHHHHHHH
T ss_pred eEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCchhhhHHHH
Confidence 999999999999999999999999974 8999999887665443
No 10
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.72 E-value=3.7e-17 Score=130.07 Aligned_cols=92 Identities=29% Similarity=0.458 Sum_probs=76.7
Q ss_pred ceEEEEEeec--eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEec
Q psy10577 70 QTYAVLRGRA--VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 146 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~ 146 (203)
..|.++.|.. ..|.+.+..++|||+..+ ||-|. ...|||+||+|.+. ++.|+|+|+|+ |||||||++|.
T Consensus 47 ~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VNg~~i~ 118 (143)
T 2kb3_A 47 ALLVVKRGPNAGARFLLDQPTTTAGRHPES---DIFLD----DVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVNREPRN 118 (143)
T ss_dssp EEEEEEESTTTTCEEEECSSEEEESSCTTC---SBCCC----CSSCCSSSEEEEEE-TTEEEEEESCCSSCCEETTEECS
T ss_pred EEEEEEeCCCCCeEEEeCCCCeeccCCCCC---CEEeC----CCCcChhhEEEEEE-CCEEEEEECCCcCCeEECCEEcc
Confidence 3566777654 589999999999998753 44332 37999999999996 57899999975 99999999997
Q ss_pred CCCceecCCCCEEEECCEEEEEEeCh
Q psy10577 147 ASNKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
++.|++||+|+||...|.|....
T Consensus 119 ---~~~L~~GD~I~iG~~~l~f~~~~ 141 (143)
T 2kb3_A 119 ---AQVMQTGDEIQIGKFRLVFLAGP 141 (143)
T ss_dssp ---EEECCTTEEEEETTEEEEEEECC
T ss_pred ---eEECCCCCEEEECCEEEEEEeCC
Confidence 68999999999999999998753
No 11
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.72 E-value=5.3e-18 Score=134.64 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=83.6
Q ss_pred eece-EEEe-ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceec
Q psy10577 77 GRAV-RYLM-KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKL 153 (203)
Q Consensus 77 G~~~-~~~m-~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L 153 (203)
|... .|.+ .+..++|||...+ ||.|........|||+||+|.++.+|.|+|+|+++ |||||||++|.++++++|
T Consensus 24 G~~~~~~~l~~~~~~~IGR~~~~---di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~~~~~~L 100 (145)
T 2csw_A 24 GMSAGWLLLEDGCEVTVGRGFGV---TYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSI 100 (145)
T ss_dssp TCSCCBEECCTTCCEEEESSTTS---SEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEEC
T ss_pred CCCCCeEEeCCCCcEEECCCCCC---CEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEECCEECCCCccEEC
Confidence 5432 4555 5678999998743 55553211122499999999996678899999976 999999999999999999
Q ss_pred CCCCEEEECC-------EEEEEEeChHHHHHHHcCCCCCccc
Q psy10577 154 NHNSIIEIAG-------LHFTFLVNQSLIQSLRADPKGTTSS 188 (203)
Q Consensus 154 ~~gd~Ieig~-------~~f~F~~n~~~v~~ir~~~~~~~~~ 188 (203)
++||+|+||. +.|.|.+..+-++.++...+...-+
T Consensus 101 ~~GD~I~iG~~~~~g~~~~f~~~~~~~~~~~~~~~l~~~~~~ 142 (145)
T 2csw_A 101 HQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKSGP 142 (145)
T ss_dssp CSSCCEEESCCCTTCSSCSCCCCEEEEEHHHHSTTBCCBCSC
T ss_pred CCCCEEEECCCCCCCceEEEEEEecccchhhccccccccccc
Confidence 9999999998 5788877777778887776654443
No 12
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.71 E-value=3.3e-17 Score=130.60 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=72.7
Q ss_pred EeeceEEEeecCceEECCCCCCCCeeeecCCC-----CCCccccccceEEEEccCC----cEEEEEcCCCCeEECCEEec
Q psy10577 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLE-----GPAWKVSRRQACIRMRNNG----DFFIANEGKRPIYVDGRPII 146 (203)
Q Consensus 76 ~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~e-----g~~~~ISR~HA~I~~~~dg----~f~l~dlGsng~~VNG~~i~ 146 (203)
.+....|.+.+..++|||+..+ |+-|... .....|||+||+|.+..++ .|+|+|+++|||||||++|.
T Consensus 37 ~~~~~~i~L~~~~~~IGR~~~~---di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT~VNg~~i~ 113 (149)
T 1gxc_A 37 QDGFANLECVNDNYWFGRDKSC---EYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVG 113 (149)
T ss_dssp STTCCCEEECSSEEEEESSTTC---SEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCEEETTEECC
T ss_pred CCCCceEEECCCCEEecCCCCC---CEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCeEECCEECC
Confidence 3444468899999999998742 4433211 0112599999999998653 79999988899999999999
Q ss_pred CCCceecCCCCEEEECC---EEEEEEe
Q psy10577 147 ASNKYKLNHNSIIEIAG---LHFTFLV 170 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~---~~f~F~~ 170 (203)
+|.+++|++||+|.||. ..|+|.-
T Consensus 114 ~~~~~~L~~GD~I~lG~~~~~~f~f~d 140 (149)
T 1gxc_A 114 KGKRRPLNNNSEIALSLSRNKVFVFFD 140 (149)
T ss_dssp TTCEEECCTTEEEEESSTTCEEEEEEE
T ss_pred CCCeEECCCCCEEEECCCCCeEEEEEE
Confidence 99999999999999997 5777764
No 13
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.71 E-value=2.3e-17 Score=130.03 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=77.0
Q ss_pred ceEEEEEeec--eEEEeecC-----ceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC-CcEEEEEcCC-CCeEE
Q psy10577 70 QTYAVLRGRA--VRYLMKFR-----DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGK-RPIYV 140 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~-----~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGs-ng~~V 140 (203)
..|.++.|.. ..|.+... .++|||+..+ ||-|. ...|||+||+|.++.+ +.|+|+|+|+ |||||
T Consensus 8 ~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~v 80 (139)
T 1mzk_A 8 LFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPS---DLALK----DSEVSGKHAQITWNSTKFKWELVDMGSLNGTLV 80 (139)
T ss_dssp EEEEECSSTTCSCEEEECTTCSTTCSEEEESSSSC---SEECC----CTTSSSEEEEEEEETTTTEEEEEETTCSSCCEE
T ss_pred EEEEEEeCCCCCeEEEecCCCCccceEEeeCCCCC---CEEeC----CCCCChHHcEEEEECCCCEEEEEECCCCCCEEE
Confidence 4666777754 47888774 7999999753 55553 3689999999999876 3799999975 99999
Q ss_pred CCEEecC--------CCceecCCCCEEEECCEEEEEEe
Q psy10577 141 DGRPIIA--------SNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 141 NG~~i~~--------g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
||+++.+ +.+++|++||+|+||...|.|..
T Consensus 81 Ng~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~ 118 (139)
T 1mzk_A 81 NSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVR 118 (139)
T ss_dssp TTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEE
T ss_pred CCEECcCcccccccCCceEECCCCCEEEECCEEEEEEE
Confidence 9999984 78999999999999999888753
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.71 E-value=6.5e-17 Score=125.40 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=76.7
Q ss_pred ceEEEEEe---eceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEe
Q psy10577 70 QTYAVLRG---RAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPI 145 (203)
Q Consensus 70 ~~lavL~G---~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i 145 (203)
+.|.++.+ ....|.+.+..++|||+..+ ||-|. ...|||+||+|.++ ++.|+|+|+|+ |||||||+++
T Consensus 13 ~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vNg~~i 84 (128)
T 1r21_A 13 RRLVTIKRSGVDGPHFPLSLSTCLFGRGIEC---DIRIQ----LPVVSKQHCKIEIH-EQEAILHNFSSTNPTQVNGSVI 84 (128)
T ss_dssp EEEEEEEETTEEEEEEECCSSEEEEESSTTS---SEECC----CTTSCTTCEEEEEC-SSCEEECCCCSSSCCEETTEEC
T ss_pred eEEEEEeCCCCCceEEEECCCCEEECCCCCC---CEEEC----CCCCChhHEEEEEE-CCEEEEEECCCCCCEEECCEEC
Confidence 46667764 23479999999999998753 55543 36999999999997 57899999985 9999999999
Q ss_pred cCCCceecCCCCEEEECCEEEEEEeCh
Q psy10577 146 IASNKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 146 ~~g~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
. +++.|++||+|.||...|.|....
T Consensus 85 ~--~~~~L~~Gd~i~iG~~~~~~~~~~ 109 (128)
T 1r21_A 85 D--EPVRLKHGDVITIIDRSFRYENES 109 (128)
T ss_dssp S--SCEECCTTEEEECSSCEEEEEEC-
T ss_pred C--CcEEcCCCCEEEECCEEEEEEeCC
Confidence 7 479999999999999999998763
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.70 E-value=5.7e-18 Score=133.53 Aligned_cols=95 Identities=11% Similarity=0.184 Sum_probs=77.5
Q ss_pred ceEEEEEeec--eEEEeecC-ceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc-CCcEEEEEcCC-CCeEECCEE
Q psy10577 70 QTYAVLRGRA--VRYLMKFR-DVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEGK-RPIYVDGRP 144 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~-~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~-dg~f~l~dlGs-ng~~VNG~~ 144 (203)
..|.++.|.. ..|.+... .++|||+...+ ||-|. ...|||+||+|.++. ++.|+|+|+|+ |||||||++
T Consensus 35 ~~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~--di~l~----d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~ 108 (140)
T 2jpe_A 35 LHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC--DFTID----HQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIR 108 (140)
T ss_dssp CBEEEESSSSEEEEECCSSCSBCCBSSCTTTS--SSCCC----CSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCE
T ss_pred EEEEEEcCCCcceEEEeCCCCeEEecCCCccC--CEEeC----CCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEE
Confidence 3577887765 37888875 49999987623 33332 368999999999985 47899999976 999999999
Q ss_pred ecCCCceecCCCCEEEECCEEEEEEe
Q psy10577 145 IIASNKYKLNHNSIIEIAGLHFTFLV 170 (203)
Q Consensus 145 i~~g~~~~L~~gd~Ieig~~~f~F~~ 170 (203)
|.++.+++|++||+|+||...+.|.+
T Consensus 109 l~~~~~~~L~~gd~i~~G~~~~~f~~ 134 (140)
T 2jpe_A 109 LEPHKPQQIPIDSTVSFGASTRAYTL 134 (140)
T ss_dssp ECSSSCCEECTTCCBBCSSCCCCBCC
T ss_pred CCCCccEECCCCCEEEECCceEEEEE
Confidence 99999999999999999998777754
No 16
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.69 E-value=1.5e-16 Score=129.13 Aligned_cols=92 Identities=28% Similarity=0.448 Sum_probs=77.4
Q ss_pred ceEEEEEeec--eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEec
Q psy10577 70 QTYAVLRGRA--VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPII 146 (203)
Q Consensus 70 ~~lavL~G~~--~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~ 146 (203)
..|.++.|.. ..|.+.+..++|||+..+ ||-|. ...|||+||+|.++ ++.|+|+|+|+ |||||||++|.
T Consensus 56 ~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~---di~l~----d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VNg~~i~ 127 (162)
T 2kfu_A 56 ALLVVKRGPNAGSRFLLDQAITSAGRHPDS---DIFLD----DVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVNREPVD 127 (162)
T ss_dssp CEEEEEESTTCSCEEETTSSEEEEESCSSS---SEEST----TTSSSSCSEEEEEE-TTEEEEECCCCSSCEEETTBCCS
T ss_pred EEEEEEeCCCCCeEEEECCCCEEECCCCCC---CEEEC----CCCcChhhEEEEEE-CCEEEEEECCCCCCeEECCEEcc
Confidence 3566777754 589999999999998743 55442 37999999999997 57899999985 99999999997
Q ss_pred CCCceecCCCCEEEECCEEEEEEeCh
Q psy10577 147 ASNKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 147 ~g~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
++.|++||+|+||...|.|....
T Consensus 128 ---~~~L~~GD~I~iG~~~l~f~~~~ 150 (162)
T 2kfu_A 128 ---SAVLANGDEVQIGKFRLVFLTGP 150 (162)
T ss_dssp ---EEECCSSCEEEETTEEEEEECSC
T ss_pred ---eEECCCCCEEEECCEEEEEEeCC
Confidence 68999999999999999998755
No 17
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.69 E-value=1.7e-16 Score=124.22 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCCceEEEEEee--ceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc--CC--cEEEEEc-----C-
Q psy10577 67 LDKQTYAVLRGR--AVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN--NG--DFFIANE-----G- 134 (203)
Q Consensus 67 ~~~~~lavL~G~--~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~--dg--~f~l~dl-----G- 134 (203)
....++.++.+. ...|.+.+..++|||+..+ ||-|. .+.|||+||+|.+.. +| .|+|+|+ |
T Consensus 8 p~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S 80 (131)
T 3hx1_A 8 PLQEHILIILDDAGRREVLLTETFYTIGRSPRA---DIRIK----SQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSS 80 (131)
T ss_dssp -CCEEEEEEEETTEEEEEEECSSEEEEESSTTS---SEECC----CSSSCTTCEEEEEC------CCEEEEESCTTSCCC
T ss_pred CCcceEEEEECCCCcEEEEECCCCEEECCCCCC---CEEEC----CCCcChhheEEEEEccCCCceEEEEEECCCCCCCC
Confidence 344566677654 3578899999999998753 44442 367999999999873 33 4999999 5
Q ss_pred CCCeEECCEEecCCCceecCCCCEEEECCEEEEEE
Q psy10577 135 KRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169 (203)
Q Consensus 135 sng~~VNG~~i~~g~~~~L~~gd~Ieig~~~f~F~ 169 (203)
+|||||||++|.+ +.|++||+|+||...|.|.
T Consensus 81 ~NGT~vNg~~i~~---~~L~~GD~I~iG~~~~~~~ 112 (131)
T 3hx1_A 81 VNGLMINGKKVQE---HIIQTGDEIVMGPQVSVRY 112 (131)
T ss_dssp SSCEEETTEEESE---EECCTTCEEECSTTCEEEE
T ss_pred CCceEECCEEeEe---EECCCCCEEEECCEEEEEE
Confidence 5999999999984 9999999999998655544
No 18
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.68 E-value=1.7e-16 Score=121.97 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CceEEEEEee-------ceEEEeecCceEECCC-CCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeE
Q psy10577 69 KQTYAVLRGR-------AVRYLMKFRDVTLGRS-TADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIY 139 (203)
Q Consensus 69 ~~~lavL~G~-------~~~~~m~~~~i~IGR~-s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~ 139 (203)
.+.|.+|.+. ...|.+...+++|||. +.+ .||-|. ...|||+||.|.+. ++.|+|+|+|+ ||||
T Consensus 11 ~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~--~di~l~----~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~ 83 (120)
T 1wln_A 11 LPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDD--NSIQLF----GPGIQPHHCDLTNM-DGVVTVTPRSMDAETY 83 (120)
T ss_dssp CCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCST--TCCCCC----CTTCCSSCEEEEES-SSCEEEEESCSSSCEE
T ss_pred cCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCC--CcEEEC----CCCCchhheEEEEc-CCEEEEEECCCCCCEE
Confidence 4677787753 3579999999999984 332 244442 36899999999997 57899999985 9999
Q ss_pred ECCEEecCCCceecCCCCEEEECC-EEEEEEeCh
Q psy10577 140 VDGRPIIASNKYKLNHNSIIEIAG-LHFTFLVNQ 172 (203)
Q Consensus 140 VNG~~i~~g~~~~L~~gd~Ieig~-~~f~F~~n~ 172 (203)
|||++|. ++++|++||+|.||. ..|.|..+.
T Consensus 84 vNg~~i~--~~~~L~~GD~I~iG~~~~~~f~~p~ 115 (120)
T 1wln_A 84 VDGQRIS--ETTMLQSGMRLQFGTSHVFKFVDPS 115 (120)
T ss_dssp ETSCBCS--SCEEECTTCEEEETTTEEEEEECSS
T ss_pred ECCEEcC--CCEECCCCCEEEECCceEEEEECCc
Confidence 9999997 578999999999999 889997653
No 19
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.68 E-value=8.7e-17 Score=122.46 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc-CCcEEEEEcCCCCeEECCEEecCCCceecCCCCE
Q psy10577 80 VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN-NGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSI 158 (203)
Q Consensus 80 ~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~-dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~ 158 (203)
..|.+.+..++|||+... |+-|. +...|||+||+|.++. ++.|+|+|.++|||||||++|.++++++|++||+
T Consensus 17 ~~~~l~~~~~~iGR~~~~---di~l~---~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~l~~~~~~~L~~GD~ 90 (116)
T 1lgp_A 17 PHVLLRKREWTIGRRRGC---DLSFP---SNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDV 90 (116)
T ss_dssp CCEEECSSEEEEESSTTS---SEECT---TCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSSCCCCCTTCE
T ss_pred cEEEECCCCEEECCCCCC---CEEeC---CCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEEcCCCCcEECCCCCE
Confidence 357888899999999742 55442 2358999999999973 6789999933499999999999999999999999
Q ss_pred EEECCE
Q psy10577 159 IEIAGL 164 (203)
Q Consensus 159 Ieig~~ 164 (203)
|.||..
T Consensus 91 i~~G~~ 96 (116)
T 1lgp_A 91 IYLVYR 96 (116)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999963
No 20
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.67 E-value=3.3e-16 Score=124.95 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=70.0
Q ss_pred ceEEEee-cCceEECCCCCCCCeeeecCCCCCCccccccceEEEEc-------cCCcEEEEEcCCCCeEECCEEecCCCc
Q psy10577 79 AVRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-------NNGDFFIANEGKRPIYVDGRPIIASNK 150 (203)
Q Consensus 79 ~~~~~m~-~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~-------~dg~f~l~dlGsng~~VNG~~i~~g~~ 150 (203)
...|.+. +..++|||+..+ ||-|. .+.|||+||+|.+. .++.|+|+|+++|||||||++|.++ +
T Consensus 29 g~~~~l~~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~VNg~~i~~~-~ 100 (151)
T 2jqj_A 29 EQKVEITNRNVTTIGRSRSC---DVILS----EPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKK-D 100 (151)
T ss_dssp EEEEEEECCSCEEEESSTTS---SEECC----CTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEETTEECCSS-C
T ss_pred ceEEEEcCCCeEEeCCCCCC---CEEEC----CCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEECCEEcCCC-c
Confidence 4567787 489999998742 55553 36899999999992 3578999999779999999999988 8
Q ss_pred eecCCCCEEEECC-EEEEEEeC
Q psy10577 151 YKLNHNSIIEIAG-LHFTFLVN 171 (203)
Q Consensus 151 ~~L~~gd~Ieig~-~~f~F~~n 171 (203)
+.|++||+|.||. ..|+|...
T Consensus 101 ~~L~~GD~I~lG~~~~~~f~~~ 122 (151)
T 2jqj_A 101 YILKNGDRIVFGKSCSFLFKYA 122 (151)
T ss_dssp EEECSSEEEEETTTEEEEEEEC
T ss_pred eECCCCCEEEECCCcEEEEEEc
Confidence 9999999999998 46777654
No 21
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.2e-16 Score=125.44 Aligned_cols=100 Identities=14% Similarity=0.247 Sum_probs=77.0
Q ss_pred CCCCceEEEEEeec------eEEEeec-CceEECCCCC----------C--CCeeeecCCCCCCccccccceEEEEccCC
Q psy10577 66 ELDKQTYAVLRGRA------VRYLMKF-RDVTLGRSTA----------D--HSVDIDLSLEGPAWKVSRRQACIRMRNNG 126 (203)
Q Consensus 66 ~~~~~~lavL~G~~------~~~~m~~-~~i~IGR~s~----------~--~~vDIDLs~eg~~~~ISR~HA~I~~~~dg 126 (203)
+.....|.+++|.. ..|.+.. ..++|||.+. + ...||-|. .+.|||+||+|.++.++
T Consensus 28 ~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~----~~~VSr~HA~I~~~~~~ 103 (158)
T 3els_A 28 DRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVR 103 (158)
T ss_dssp GSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCSSCEEEEEEEET
T ss_pred cCCceEEEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcC----CCCCCcccEEEEEEccC
Confidence 33445677887532 2666654 4689999852 1 12455552 46999999999998654
Q ss_pred ---cEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEEC------CEEEEEE
Q psy10577 127 ---DFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIA------GLHFTFL 169 (203)
Q Consensus 127 ---~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig------~~~f~F~ 169 (203)
.|+|.|+|+ |||||||++|.++.+++|++||+|.|| .+.|+|.
T Consensus 104 ~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 104 GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp TEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 399999976 999999999999999999999999999 6788885
No 22
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.66 E-value=2.9e-16 Score=127.09 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=70.7
Q ss_pred EeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecC
Q psy10577 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLN 154 (203)
Q Consensus 76 ~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~ 154 (203)
.|....|.+...+++|||+..+ ||-|. ...|||+||+|.++ ++.|+|+|+++ |||||||++|. +++|+
T Consensus 74 ~g~g~~~~L~~~~~~IGR~~~~---dI~L~----d~~VSr~HA~I~~~-~~~~~l~DlgStNGT~VNG~~i~---~~~L~ 142 (157)
T 3oun_A 74 DGSGRTYQLREGSNIIGRGQDA---QFRLP----DTGVSRRHLEIRWD-GQVALLADLNSTNGTTVNNAPVQ---EWQLA 142 (157)
T ss_dssp TTTCCEEECCSEEEEEESSTTC---SEECC----CTTSCTTCEEEEEC-SSCEEEEECSCSSCCEETTEECS---EEECC
T ss_pred CCCCeEEEECCCcEEEEeCCCC---CEEeC----CCCcChhHEEEEEE-CCEEEEEECCCCCCeEECCEECc---eEECC
Confidence 3666789999999999998743 44442 36999999999997 46799999975 99999999997 69999
Q ss_pred CCCEEEECCEEEEEE
Q psy10577 155 HNSIIEIAGLHFTFL 169 (203)
Q Consensus 155 ~gd~Ieig~~~f~F~ 169 (203)
+||+|+||...|+|.
T Consensus 143 ~GD~I~lG~~~l~fr 157 (157)
T 3oun_A 143 DGDVIRLGHSEIIVR 157 (157)
T ss_dssp TTCEEEETTEEEEEC
T ss_pred CCCEEEECCEEEEEC
Confidence 999999999999984
No 23
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.65 E-value=8.8e-16 Score=119.72 Aligned_cols=95 Identities=18% Similarity=0.311 Sum_probs=75.4
Q ss_pred CCCCceEEEEEeec-----eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEE
Q psy10577 66 ELDKQTYAVLRGRA-----VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYV 140 (203)
Q Consensus 66 ~~~~~~lavL~G~~-----~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~V 140 (203)
+.+.+.|..|.+.. ..|+++. .++|||++. .||-|. ...|||+||+|.+..+|.|+|+++++|||||
T Consensus 23 ~~~~PhLvnLn~Dp~~s~~l~y~L~~-~t~IGR~~~---~DI~L~----~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~V 94 (124)
T 3fm8_A 23 GDDKCFLVNLNADPALNELLVYYLKE-HTLIGSANS---QDIQLC----GMGILPEHCIIDITSEGQVMLTPQKNTRTFV 94 (124)
T ss_dssp ----CEEEETTCCTTSSCCCEEECCS-EEEEESSTT---CSEECC----STTCCSSCEEEEECTTSCEEEEECTTCCEEE
T ss_pred cCCccEEEEeCCCCccCceEEEECCC-CeEECCCCC---CCEEEC----CCCeecceEEEEECCCCeEEEEECCCCCEEE
Confidence 45667888887654 3688876 699999875 366664 3689999999998667889999999999999
Q ss_pred CCEEecCCCceecCCCCEEEECC-EEEEEEe
Q psy10577 141 DGRPIIASNKYKLNHNSIIEIAG-LHFTFLV 170 (203)
Q Consensus 141 NG~~i~~g~~~~L~~gd~Ieig~-~~f~F~~ 170 (203)
||++|. ++++|++||+|.||. ..|+|.-
T Consensus 95 NG~~V~--~~~~L~~GD~I~lG~~~~FrFn~ 123 (124)
T 3fm8_A 95 NGSSVS--SPIQLHHGDRILWGNNHFFRLNL 123 (124)
T ss_dssp TTEECC--SCEEECTTCEEEETTTEEEEEEC
T ss_pred CCEEcC--CcEECCCCCEEEECCCeEEEEEC
Confidence 999997 479999999999995 5677753
No 24
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.63 E-value=1e-14 Score=117.09 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCceEEEEEeec-----eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCC---cEEEEEcCC-CCe
Q psy10577 68 DKQTYAVLRGRA-----VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG---DFFIANEGK-RPI 138 (203)
Q Consensus 68 ~~~~lavL~G~~-----~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg---~f~l~dlGs-ng~ 138 (203)
+.|.|.-|.... ..|+++...++|||.+.+...||-|. ...|||+||.|.++.++ .|++.+.++ |||
T Consensus 37 ~~PhLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~----~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt 112 (154)
T 4ejq_A 37 KTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLS----GHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT 112 (154)
T ss_dssp SSCEEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECC----CTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE
T ss_pred CCceEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEEC----CCCcccccEEEEEecCCCceeEEEEecCCCCce
Confidence 456777666543 46999999999999876656677774 37899999999998654 377777765 999
Q ss_pred EECCEEecCCCceecCCCCEEEECCE-EEEEEeChHHHHHHHc
Q psy10577 139 YVDGRPIIASNKYKLNHNSIIEIAGL-HFTFLVNQSLIQSLRA 180 (203)
Q Consensus 139 ~VNG~~i~~g~~~~L~~gd~Ieig~~-~f~F~~n~~~v~~ir~ 180 (203)
||||++|. +++.|++||+|.||.. .|+|..|.+. ++.|.
T Consensus 113 ~VNG~~i~--~~~~L~~GD~I~~G~~~~Frf~~P~~a-~~~re 152 (154)
T 4ejq_A 113 YVNGKKVT--EPSILRSGNRIIMGKSHVFRFNHPEQA-RQERE 152 (154)
T ss_dssp EETTEECC--SCEECCTTCEEEETTTEEEEEECHHHH-HHHHT
T ss_pred EECCEEcC--CceECCCCCEEEECCcEEEEEcChHHh-hhhcc
Confidence 99999995 4789999999999964 6888766654 44443
No 25
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.62 E-value=4.4e-16 Score=125.45 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=68.6
Q ss_pred EEEeecCc--eEECCCCCCCCeeeecCCCCCCccccccceEEEEcc----C----------CcEEEEEcCCCCeEECCEE
Q psy10577 81 RYLMKFRD--VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN----N----------GDFFIANEGKRPIYVDGRP 144 (203)
Q Consensus 81 ~~~m~~~~--i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~----d----------g~f~l~dlGsng~~VNG~~ 144 (203)
.|++.... ++|||+..+ ||-|. .+.|||+||+|.+.. . +.|+|+|+++|||||||++
T Consensus 19 ~i~L~~~~~~~~IGR~~~~---di~l~----d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~r 91 (158)
T 1dmz_A 19 SLEIQQGVNPFFIGRSEDC---NCKIE----DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNR 91 (158)
T ss_dssp CEEETTSCSCEEEESSTTS---SEECC----CTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTEE
T ss_pred EEEEcCCCceEEECCCCCC---CEEeC----CCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCEE
Confidence 46677655 999998742 44442 359999999999864 1 6799999977999999999
Q ss_pred ecCCCceecCCCCEEEE-----CCEEEEEEe
Q psy10577 145 IIASNKYKLNHNSIIEI-----AGLHFTFLV 170 (203)
Q Consensus 145 i~~g~~~~L~~gd~Iei-----g~~~f~F~~ 170 (203)
|.+|.+++|++||+|+| |...|.|.+
T Consensus 92 i~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 92 MIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp CCSSEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred cCCCceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 99999999999999999 988777765
No 26
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.61 E-value=4.8e-15 Score=124.61 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=75.3
Q ss_pred ceEEEEEeec------eEEEe-ecCceEECCCCC------------CCCeeeecCCCCCCccccccceEEEEccCC---c
Q psy10577 70 QTYAVLRGRA------VRYLM-KFRDVTLGRSTA------------DHSVDIDLSLEGPAWKVSRRQACIRMRNNG---D 127 (203)
Q Consensus 70 ~~lavL~G~~------~~~~m-~~~~i~IGR~s~------------~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg---~ 127 (203)
..|.|++|.. ..|.+ .+..++|||... ....||-|. .+.|||+||+|.+..++ .
T Consensus 79 ~~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~----dp~VSR~HA~I~~~~~~~~~~ 154 (205)
T 3elv_A 79 YELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVRGILK 154 (205)
T ss_dssp EEEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCTTCEEEEEEEETTEEE
T ss_pred eEEEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeC----CCCCCcccEEEEEecCCCcee
Confidence 3577887432 26777 457899999953 122455552 36899999999987544 3
Q ss_pred EEEEEcCC-CCeEECCEEecCCCceecCCCCEEEEC------CEEEEEE
Q psy10577 128 FFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIA------GLHFTFL 169 (203)
Q Consensus 128 f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig------~~~f~F~ 169 (203)
|||.|+|| |||||||++|.++..+.|++||+|.|| .+.|+|.
T Consensus 155 ~~l~DLgStNGTfVNG~rI~~~~~~~L~~GD~I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 155 CYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFM 203 (205)
T ss_dssp EEEEECSCSSCCEETTEECCBTSCEECCTTCEEESSSSGGGCSEEEEEE
T ss_pred EEEEeCCCCCCCeECCEECCCCceeECCCCCEEEECCCCCCCCeEEEEE
Confidence 99999986 999999999999999999999999999 5778885
No 27
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.59 E-value=7.9e-16 Score=126.96 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=69.2
Q ss_pred EEEeecCc--eEECCCCCCCCeeeecCCCCCCccccccceEEEEccC--------------CcEEEEEcCCCCeEECCEE
Q psy10577 81 RYLMKFRD--VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN--------------GDFFIANEGKRPIYVDGRP 144 (203)
Q Consensus 81 ~~~m~~~~--i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d--------------g~f~l~dlGsng~~VNG~~ 144 (203)
.|++.... ++|||+..+ ||-|. ...|||+||+|.+... +.|+|+|+++|||||||++
T Consensus 43 ~i~L~~~~~~~~IGR~~~~---di~l~----d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~r 115 (182)
T 1qu5_A 43 SLEIQQGVNPFFIGRSEDC---NCKIE----DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNR 115 (182)
T ss_dssp CCCBTTCCSSEEESSSTTS---SSCCC----CTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETTEE
T ss_pred EEEEcCCCceEEECCCCCC---CEEEC----CCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECCEE
Confidence 56777666 999998743 33332 3599999999998741 6899999977999999999
Q ss_pred ecCCCceecCCCCEEEE-----CCEEEEEEe
Q psy10577 145 IIASNKYKLNHNSIIEI-----AGLHFTFLV 170 (203)
Q Consensus 145 i~~g~~~~L~~gd~Iei-----g~~~f~F~~ 170 (203)
|.+|.+++|++||+|.| |...|.|.+
T Consensus 116 i~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 116 MIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp CCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred cCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999 999888865
No 28
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.58 E-value=6.9e-15 Score=132.29 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=75.2
Q ss_pred eEEEEEe-eceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCC-CCeEECCEEecCC
Q psy10577 71 TYAVLRG-RAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK-RPIYVDGRPIIAS 148 (203)
Q Consensus 71 ~lavL~G-~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g 148 (203)
.+.++.+ ....|.+.+..++|||++.+ ||-|. ...|||+||+|.++ ++.|+|+|+|| |||||||++|.
T Consensus 289 ~~~l~~~~~g~~~~l~~~~~~iGR~~~~---di~l~----~~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vng~~i~-- 358 (388)
T 2ff4_A 289 VAYLHDIASGRGYPLQAAATRIGRLHDN---DIVLD----SANVSRHHAVIVDT-GTNYVINDLRSSNGVHVQHERIR-- 358 (388)
T ss_dssp CCEEEETTTCCEEECCSSEEEEESSTTS---SEECC----CTTSCTTCEEEEEC-SSCEEEEECSCSSCCEETTEECS--
T ss_pred eEEEEECCCCcEEEECCCCEEEecCCCC---eEEEC----CCccChhHeEEEEE-CCEEEEEECCCCCCeEECCEECC--
Confidence 3344442 34679999999999998753 45442 37999999999997 56899999985 99999999994
Q ss_pred CceecCCCCEEEECCEEEEEEeCh
Q psy10577 149 NKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 149 ~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
.+++|++||+|.||...|.|....
T Consensus 359 ~~~~L~~gd~i~~G~~~~~~~~~~ 382 (388)
T 2ff4_A 359 SAVTLNDGDHIRICDHEFTFQISA 382 (388)
T ss_dssp SEEEECTTCEEEETTEEEEEECSC
T ss_pred CceECCCCCEEEECCEEEEEEeCC
Confidence 589999999999999999998653
No 29
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.40 E-value=1.1e-12 Score=99.17 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=66.0
Q ss_pred eeceEEEe-ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC-CcEEEEEcCCCCeEECCEEecCCCceecC
Q psy10577 77 GRAVRYLM-KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYKLN 154 (203)
Q Consensus 77 G~~~~~~m-~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGsng~~VNG~~i~~g~~~~L~ 154 (203)
|....+.+ .++.|+|||++..... .+++||+|++|..+.+ |.+.|+++|.||++|||+++.+|+.+.|+
T Consensus 12 ~~~~~I~L~~g~~v~iGR~p~t~I~---------DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~ 82 (102)
T 3kt9_A 12 SRHQRIRLPHLEAVVIGRGPETKIT---------DKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQ 82 (102)
T ss_dssp STTCEEECCBTCEEEECSSTTTCCC---------CTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEEC
T ss_pred CCCCcEEcCCCCcEEeccCCccccc---------cCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeC
Confidence 44333444 4555789999854221 3899999999999864 55699999999999999999999999999
Q ss_pred CCCEEEECCEEEEEE
Q psy10577 155 HNSIIEIAGLHFTFL 169 (203)
Q Consensus 155 ~gd~Ieig~~~f~F~ 169 (203)
|||+|++-.-.+.|.
T Consensus 83 ~GD~l~Ll~~~~~~~ 97 (102)
T 3kt9_A 83 PGQVLHMVNELYPYI 97 (102)
T ss_dssp TTCCEEEETTEEEEE
T ss_pred CCCEEEEccCCceEE
Confidence 999999986544443
No 30
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.32 E-value=3.8e-12 Score=97.45 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=66.6
Q ss_pred eeceEEEe--ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC-CcEEEEEcCCCCeEECCEEecCCCceec
Q psy10577 77 GRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYKL 153 (203)
Q Consensus 77 G~~~~~~m--~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGsng~~VNG~~i~~g~~~~L 153 (203)
|......| .+.+++|||++..... .+++||+|++|..+.+ +.+.++++|.||+++||+.+.+|+.+.|
T Consensus 17 ~~~~~I~Lp~~~g~~viGR~p~t~I~---------DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k~~~~~L 87 (110)
T 2brf_A 17 GEAPPIFLPSDGQALVLGRGPLTQVT---------DRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSL 87 (110)
T ss_dssp TSSCCEECCSTTCCEEECSBTTTTBC---------CTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEE
T ss_pred CCCCcEEeccCCCCEEEcCCCCcccc---------cccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCCCCEEEe
Confidence 44446667 5789999999843222 2799999999998754 6677899999999999999999999999
Q ss_pred CCCCEEEE--CCEEEEEE
Q psy10577 154 NHNSIIEI--AGLHFTFL 169 (203)
Q Consensus 154 ~~gd~Iei--g~~~f~F~ 169 (203)
++||+|++ |.+.|.+.
T Consensus 88 ~~GD~leLl~g~y~~~v~ 105 (110)
T 2brf_A 88 GVGDTLYLVNGLHPLTLR 105 (110)
T ss_dssp ETTCEEEEETTEEEEEEE
T ss_pred cCCCEEEEccCCeEEEEE
Confidence 99999998 44444444
No 31
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.30 E-value=1.7e-11 Score=101.24 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCceEEEEEeec-----eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC----CcEEEEEcCCCCe
Q psy10577 68 DKQTYAVLRGRA-----VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN----GDFFIANEGKRPI 138 (203)
Q Consensus 68 ~~~~lavL~G~~-----~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d----g~f~l~dlGsng~ 138 (203)
..|.|.-|.... ..|+++...++|||.+.+...||-|+. ..|+++||.|..+.+ +.++|.....+.|
T Consensus 67 ~~PhLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G----~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t 142 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSG----HFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT 142 (184)
T ss_dssp SSCEEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCS----TTCCSEEEEEEEECCSSCSCEEEEEECTTCCE
T ss_pred CCceEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECc----cccccccEEEEEcCCCCceEEEEEeeCCCCeE
Confidence 346777766544 479999999999999877788988853 689999999998743 4477887777889
Q ss_pred EECCEEecCCCceecCCCCEEEECCE-EEEEEeChHHHHHHH
Q psy10577 139 YVDGRPIIASNKYKLNHNSIIEIAGL-HFTFLVNQSLIQSLR 179 (203)
Q Consensus 139 ~VNG~~i~~g~~~~L~~gd~Ieig~~-~f~F~~n~~~v~~ir 179 (203)
||||++|. +++.|+|||+|.||.. .|+|..|.+. ++.|
T Consensus 143 ~VNG~~I~--~~~~L~~GDrI~lG~~h~Frfn~P~ea-~~~r 181 (184)
T 4egx_A 143 YVNGKKVT--EPSILRSGNRIIMGKSHVFRFNHPEQA-RQER 181 (184)
T ss_dssp EETTEECC--SCEECCTTCEEEETTTEEEEEECHHHH-HHC-
T ss_pred EEcCEEcc--ccEEcCCCCEEEECCCCEEEECChHHH-HHhh
Confidence 99999996 5899999999999965 6888765543 3343
No 32
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.25 E-value=1e-11 Score=110.36 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred EEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEcc----------CCcEEEEEcCC-CCeEECCEEecCCC
Q psy10577 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRN----------NGDFFIANEGK-RPIYVDGRPIIASN 149 (203)
Q Consensus 81 ~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~----------dg~f~l~dlGs-ng~~VNG~~i~~g~ 149 (203)
+|.+...+++|||...+...+|-+ ..+.|||+||+|.++. ...++|+|+|+ |||||||+++. +.
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~i----dD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~-~~ 89 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQV----ISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVG-QN 89 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEEC----CCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECC-TT
T ss_pred EEEecCCeEEECCCCCccCceeec----CCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECC-Cc
Confidence 466666679999997653223333 3589999999999863 23699999975 99999999996 45
Q ss_pred ceec-CCCCEEEECCE
Q psy10577 150 KYKL-NHNSIIEIAGL 164 (203)
Q Consensus 150 ~~~L-~~gd~Ieig~~ 164 (203)
+..| .+||.|+||..
T Consensus 90 ~~~L~~dgd~I~fG~~ 105 (325)
T 3huf_A 90 GDSYKEKDLKIQLGKC 105 (325)
T ss_dssp CEEECSSEEEEEETTC
T ss_pred eeeecCCCCEEEecCC
Confidence 5555 58999999964
No 33
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.25 E-value=1.9e-11 Score=97.29 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=71.1
Q ss_pred ceEEEEE---eeceEEEe--ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC-CcEEEEEcCCCCeEECCE
Q psy10577 70 QTYAVLR---GRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGR 143 (203)
Q Consensus 70 ~~lavL~---G~~~~~~m--~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGsng~~VNG~ 143 (203)
+.++.|. |......| .+.+++|||+...... .+++||+|++|..+.+ +.+.+..+|.|+++|||+
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet~It---------DkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~ 77 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVT---------DRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVH 77 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBTTTTBC---------CSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTE
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCCccccc---------cccccceeEEEEEecCCCeEEEEEcccCCcEECCE
Confidence 3455553 44445667 5789999999843222 2799999999998754 566699999999999999
Q ss_pred EecCCCceecCCCCEEEEC--CEEEEEEe
Q psy10577 144 PIIASNKYKLNHNSIIEIA--GLHFTFLV 170 (203)
Q Consensus 144 ~i~~g~~~~L~~gd~Ieig--~~~f~F~~ 170 (203)
.+.++..+.|+|||+|++= .+.|.|..
T Consensus 78 ~L~k~~~~~L~~GD~LeLl~g~y~f~V~f 106 (143)
T 1yj5_C 78 ELKPGLSGSLSLGDVLYLVNGLYPLTLRW 106 (143)
T ss_dssp ECCTTCEEEECTTCEEESSSSCSEEEEEE
T ss_pred EecCCCEEEecCCCEEEEecCCceEEEEe
Confidence 9999999999999999954 45555554
No 34
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.12 E-value=3.1e-11 Score=93.52 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred EeeceEEEe--ecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccC-CcEEEEEcCCCCeEECCEEecCCCcee
Q psy10577 76 RGRAVRYLM--KFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNN-GDFFIANEGKRPIYVDGRPIIASNKYK 152 (203)
Q Consensus 76 ~G~~~~~~m--~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~d-g~f~l~dlGsng~~VNG~~i~~g~~~~ 152 (203)
.+......| ...+++|||++..... .+++||+|++++.+.+ +.+.++.+|.||++|||+++.+++.+.
T Consensus 23 ~~~~~~I~Lp~~~g~~viGRgp~t~I~---------DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~k~~~~~ 93 (119)
T 1ujx_A 23 TGGPPPIFLPSDGQALVLGRGPLTQVT---------DRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGLSGS 93 (119)
T ss_dssp SSSCCCCCCCTTSCCEEESBBTTTTBC---------CTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCTTCEEE
T ss_pred CCCCCcEEeccCCCCEEEcCCCCcccc---------cccccceeEEEEEecCCCEEEEEEcccCCcEECCEEecCCCEEE
Confidence 344445666 4789999999843222 3799999999998754 667789999999999999999999999
Q ss_pred cCCCCEEEE--CCEEEEEE
Q psy10577 153 LNHNSIIEI--AGLHFTFL 169 (203)
Q Consensus 153 L~~gd~Iei--g~~~f~F~ 169 (203)
|+|||+|++ |.+.|.|.
T Consensus 94 L~~GD~l~Ll~g~y~~~v~ 112 (119)
T 1ujx_A 94 LSLGDVLYLVNGLYPLTLR 112 (119)
T ss_dssp EETTCCCBCBTTBSCCEEE
T ss_pred ecCCCEEEEecCCeEEEEE
Confidence 999999995 34444443
No 35
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.09 E-value=3.1e-10 Score=85.41 Aligned_cols=85 Identities=11% Similarity=0.115 Sum_probs=65.3
Q ss_pred EeeceEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCC-eEECCEEecCCCceecC
Q psy10577 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRP-IYVDGRPIIASNKYKLN 154 (203)
Q Consensus 76 ~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng-~~VNG~~i~~g~~~~L~ 154 (203)
.|+....+-...-..|||.... ++-| +++.|||.||+|....+|.|.+ + +.|| +||||+++ .++.|.
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~~~---~l~L----ddpsVs~~HAti~~~~~G~~~l-~-S~nGtVFVNGqrv---~~~~I~ 77 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQKGL---EISI----ADESMELAHATACILRRGVVRL-A-ALVGKIFVNDQEE---TVVDIG 77 (102)
T ss_dssp TTSCCEECCTTCCEEEESSTTS---TEEC----CCTTSCTTCEEEEEEETTEEEE-E-ESSSCEEETTEEE---SEEEEC
T ss_pred CCcccEEeecCcEEEEcCCCCC---cEEE----CCcccccceEEEEecCCceEEE-E-eccCcEEECCEEe---eeEEcc
Confidence 4666666666777899998543 2222 3589999999999887775554 4 7799 69999999 489999
Q ss_pred CCCE------EEECCEEEEEEeCh
Q psy10577 155 HNSI------IEIAGLHFTFLVNQ 172 (203)
Q Consensus 155 ~gd~------Ieig~~~f~F~~n~ 172 (203)
+||. ++||...=.+.++.
T Consensus 78 ~gDtI~g~v~lrFGnvea~l~~~~ 101 (102)
T 3uv0_A 78 MENAVAGKVKLRFGNVEARLEFGE 101 (102)
T ss_dssp GGGCBTTEEEEEETTEEEEEEEC-
T ss_pred CCcccccEEEEEecCEEEEEEecC
Confidence 9999 99999876666653
No 36
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.07 E-value=2e-10 Score=102.74 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=68.8
Q ss_pred EEEEEeeceEEEeecCceEECCCCCCCCeeeecC-----CCCCCccccccceEEEEccC--C--cEEEEEcCCCCeEECC
Q psy10577 72 YAVLRGRAVRYLMKFRDVTLGRSTADHSVDIDLS-----LEGPAWKVSRRQACIRMRNN--G--DFFIANEGKRPIYVDG 142 (203)
Q Consensus 72 lavL~G~~~~~~m~~~~i~IGR~s~~~~vDIDLs-----~eg~~~~ISR~HA~I~~~~d--g--~f~l~dlGsng~~VNG 142 (203)
|..+.+....+.+...+++|||+.++ |+-+. .......|||+||+|....+ + .|||.|.+.|||||||
T Consensus 13 l~~~~~~~~~~~l~~~~~~iGR~~~~---~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt~vn~ 89 (419)
T 3i6u_A 13 LWALQDGFANLECVNDNYWFGRDKSC---EYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNT 89 (419)
T ss_dssp EEECSSSSCCEEECSSEEEEESSTTS---SEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCEEETT
T ss_pred eeecCCCCCceEecCCCEEecCCCcc---CEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCceECc
Confidence 33333333468899999999999653 22221 11112578999999976522 1 3999997779999999
Q ss_pred EEecCCCceecCCCCEEEECC---EEEEEE
Q psy10577 143 RPIIASNKYKLNHNSIIEIAG---LHFTFL 169 (203)
Q Consensus 143 ~~i~~g~~~~L~~gd~Ieig~---~~f~F~ 169 (203)
+.+.++.+.+|.+|+.|.||. ..|.|.
T Consensus 90 ~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~ 119 (419)
T 3i6u_A 90 ELVGKGKRRPLNNNSEIALSLSRNKVFVFF 119 (419)
T ss_dssp EECCTTCEEECCTTEEEEESSTTCEEEEEE
T ss_pred ccccCCCcccCCCCCEeeeeccccceEEEe
Confidence 999999999999999999994 345543
No 37
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.85 E-value=1e-08 Score=79.73 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=73.3
Q ss_pred eEEEEEeec--eEEEeecCceEECCCC-CCCCeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEecC
Q psy10577 71 TYAVLRGRA--VRYLMKFRDVTLGRST-ADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIA 147 (203)
Q Consensus 71 ~lavL~G~~--~~~~m~~~~i~IGR~s-~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~ 147 (203)
-|-++.|.. ....+....++||.++ .+ |+-|. .+.|||+||+|.+..+ .|+|. -+.||+|+||+.+..
T Consensus 6 klrvlsG~~~G~~l~L~~~~~~IGs~~~~~---DLvL~----D~~Vs~~H~~L~~~~~-g~~L~-~s~ngt~vdG~~v~~ 76 (123)
T 4a0e_A 6 VCRFYQGKHRGVEVELPHGRCVFGSDPLQS---DIVLS----DSEIAPVHLVLMVDEE-GIRLT-DSAEPLLQEGLPVPL 76 (123)
T ss_dssp EEEECSGGGTTCEEEECSEEEEEESCTTTC---SEECC----CTTSCSSCEEEEEETT-EEEEE-EESSCCEETTEECCT
T ss_pred EEEEecCCCCCcEEEcCCCcEEECCCCCCC---CEEEe----CCCccceeEEEEECCC-eEEEE-eccCCEEECCEEccc
Confidence 466777765 4778888899999986 43 55553 3799999999999865 58886 345999999999885
Q ss_pred CCceecCCCCEEEECCEEEEEEeCh
Q psy10577 148 SNKYKLNHNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 148 g~~~~L~~gd~Ieig~~~f~F~~n~ 172 (203)
+. .|..|+.+++|+..|.|.-..
T Consensus 77 ~~--~L~~g~~l~lG~~~l~~~~~~ 99 (123)
T 4a0e_A 77 GT--LLRAGSCLEVGFLLWTFVAVG 99 (123)
T ss_dssp TC--BCCTTSCEEETTEEEEEEETT
T ss_pred cc--ccCCCCEEEEccEEEEEEcCC
Confidence 54 899999999999999998643
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.48 E-value=2.3e-07 Score=78.94 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=65.6
Q ss_pred CCceEEEEEeec---eEEEeecCceEECCCCCCCCeeeecCCCCCCccccccceEEEEc-cC--CcEEEEEcCC-CCe-E
Q psy10577 68 DKQTYAVLRGRA---VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-NN--GDFFIANEGK-RPI-Y 139 (203)
Q Consensus 68 ~~~~lavL~G~~---~~~~m~~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~-~d--g~f~l~dlGs-ng~-~ 139 (203)
+..+++++.... ..|.+..+.++|||+..+ ||-| +++ + ||.+..+ .+ +.|+|+++|+ ||+ |
T Consensus 70 ~~~~l~l~~~~~~~~~~y~~~~~~itIG~~~~~---dI~l--~~~---~---~~~~~~~~~~~~~~~~l~~l~s~ngtvy 138 (238)
T 1wv3_A 70 DDITLQLYTEADYASFAYPSIQDTMTIGPNAYD---DMVI--QSL---M---NAIIIKDFQSIQESQYVRIVHDKNTDVY 138 (238)
T ss_dssp SEEEEEEEEGGGEEEEECCSSCSEEEEESSTTS---SEEC--TTC---S---SCEEEECGGGHHHHCEEEEECCTTCCEE
T ss_pred cCcEEEEEEcCCccEEEEecCCceEEEeCCCCC---eEEe--CCC---e---eEEEEecccCcCCcEEEEEccCCCCCEE
Confidence 344566544322 356677679999997654 4444 222 2 5877665 12 5899999994 885 9
Q ss_pred ECCEEecCCCceecC-CCCEEEECCEEEEEEeCh
Q psy10577 140 VDGRPIIASNKYKLN-HNSIIEIAGLHFTFLVNQ 172 (203)
Q Consensus 140 VNG~~i~~g~~~~L~-~gd~Ieig~~~f~F~~n~ 172 (203)
|||+++. .++.|+ .||.|.||++.|.|.-..
T Consensus 139 vNg~~i~--~~~~L~~~GD~I~ig~~~~~~~~~~ 170 (238)
T 1wv3_A 139 INYELQE--QLTNKAYIGDHIYVEGIWLEVQADG 170 (238)
T ss_dssp ETTEECC--SSEEEEETTCEEEETTEEEEECSSE
T ss_pred ECCEEec--cceeccCCcCEEEECCEEEEEECCE
Confidence 9999996 356899 999999999999987654
No 39
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=84.10 E-value=0.74 Score=30.51 Aligned_cols=25 Identities=8% Similarity=0.337 Sum_probs=21.0
Q ss_pred CeEECCEEecCC--CceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
-+.|||+.+.+. ...+|++||.|+|
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEE
Confidence 488999999865 4579999999987
No 40
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.96 E-value=0.59 Score=32.70 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCeEECCEEecCCC--ceecCCCCEEEEC
Q psy10577 136 RPIYVDGRPIIASN--KYKLNHNSIIEIA 162 (203)
Q Consensus 136 ng~~VNG~~i~~g~--~~~L~~gd~Ieig 162 (203)
-.+.|||+.|++.+ ...|++||.|+|=
T Consensus 35 vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 35 VTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 36899999998765 4799999999983
No 41
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=80.64 E-value=0.5 Score=32.61 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.6
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
.+.|||+.|++.+ ...|++||.|+|
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 6889999998654 579999999998
No 42
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=79.09 E-value=1.8 Score=29.22 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEECCEEecCCCceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
+.|||+.+.+.+ +|++||.|+|
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEE
Confidence 789999998755 8999999987
No 43
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=78.47 E-value=1.6 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.1
Q ss_pred CeEECCEEecCCC--ceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASN--KYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~--~~~L~~gd~Iei 161 (203)
-+.|||+.+.+.+ ..+|++||.|+|
T Consensus 54 aVavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 54 IVERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEEECCEECChhhcCCcCCCCCCEEEE
Confidence 4889999998643 579999999997
No 44
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=78.30 E-value=1.8 Score=29.16 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=20.0
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+.. ..+|++||.|+|
T Consensus 48 ~v~vNg~~v~~--~~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQK--SDFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECT--TSEECTTCEEEE
T ss_pred EEEECCEECCC--CCCcCCCCEEEE
Confidence 58999999875 479999999987
No 45
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=77.10 E-value=0.81 Score=33.53 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 135 KRPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 135 sng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
...+.|||+.+. ...+|++||.|+|-.
T Consensus 58 ~~~V~Vng~~v~--~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 58 TNKIGIFSRPIK--LTDVLKEGDRIEIYR 84 (97)
T ss_dssp TSEEEEEECSCC--TTCBCCTTCEEEECC
T ss_pred ccEEEEcCEECC--CCccCCCCCEEEEEe
Confidence 456899999887 467899999999964
No 46
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=76.96 E-value=1.1 Score=32.39 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCCeEECCEEecC--CCceecCCCCEEEE
Q psy10577 134 GKRPIYVDGRPIIA--SNKYKLNHNSIIEI 161 (203)
Q Consensus 134 Gsng~~VNG~~i~~--g~~~~L~~gd~Iei 161 (203)
|+.-+.|||+.+.. +...+|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 44568999998854 55789999999987
No 47
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=76.85 E-value=1.6 Score=30.52 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.7
Q ss_pred CCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
-+..|||+.+.- ..+|++||.|+|=
T Consensus 42 v~AkVNG~~v~L--~~~L~~gd~VeIi 66 (78)
T 3hvz_A 42 IGAKVDGRIVPI--DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEETTEEECT--TCBCCTTCBEEEE
T ss_pred EEEEECCEEcCC--CcccCCCCEEEEE
Confidence 367899999875 5789999999983
No 48
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=75.41 E-value=0.96 Score=30.08 Aligned_cols=25 Identities=4% Similarity=0.096 Sum_probs=20.6
Q ss_pred CeEECCEEecCC--CceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIAS--NKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g--~~~~L~~gd~Iei 161 (203)
.+.|||+.+.+. ...+|++||.|+|
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEE
Confidence 488999999853 3578999999987
No 49
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=72.04 E-value=2 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEECCEEecC--CCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIA--SNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~--g~~~~L~~gd~Iei 161 (203)
-+.|||+.+.. +...+|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 48999998864 55789999999987
No 50
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=71.94 E-value=2.6 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.2
Q ss_pred CCeEECCEEecCCCceecCCCCEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
--+.|||+.+. +...+|++||.|.|
T Consensus 43 ~~vavN~~~v~-~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 43 CAIALNDHLID-NLNTPLKDGDVISL 67 (74)
T ss_dssp CEEEESSSEEC-CTTCCCCTTCEEEE
T ss_pred cEEEECCEEcC-CCCcCCCCCCEEEE
Confidence 45789999874 55689999999986
No 51
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=71.52 E-value=1.3 Score=30.46 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCeEECCEEecCCCceecCCCCEEEE
Q psy10577 136 RPIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 136 ng~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
--+.|||+.+... .+|++||.|+|
T Consensus 47 v~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 47 AIAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp SCEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEEECCEECCCC--CCcCCCCEEEE
Confidence 3589999999863 78999999986
No 52
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=67.81 E-value=4 Score=27.89 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=23.4
Q ss_pred CeEECCEEe-cCCCceecCCCCEEEECCEEEEE
Q psy10577 137 PIYVDGRPI-IASNKYKLNHNSIIEIAGLHFTF 168 (203)
Q Consensus 137 g~~VNG~~i-~~g~~~~L~~gd~Ieig~~~f~F 168 (203)
.++|||+.+ .++. .+..||.|++.+..+..
T Consensus 47 ~V~VNG~~v~~~~~--~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 47 QVKVDGAVETRKRC--KIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HHEETTBCCCCSSC--CCCSSEEEEETTEEEEE
T ss_pred EEEECCEEecCCCC--CCCCCCEEEECCEEEEE
Confidence 489999987 4443 46789999999987754
No 53
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=67.45 E-value=4.2 Score=28.15 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=19.7
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+.. ..+|++||.|.|
T Consensus 60 ~v~VN~~~v~~--~~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAAL--GEATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCT--TSBCCTTCEEEE
T ss_pred EEEECCEECCC--CcccCCCCEEEE
Confidence 58999999875 578999999986
No 54
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=66.71 E-value=3.9 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.3
Q ss_pred CeEECCEEecC--CCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIA--SNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~--g~~~~L~~gd~Iei 161 (203)
-++|||+.+.. +...+|++||.|.|
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 48999999873 44689999999876
No 55
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=66.27 E-value=4.9 Score=27.11 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=19.4
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+. ...+|++||.|.|
T Consensus 52 ~v~vN~~~v~--~~~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVS--FDHPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECC--TTCBCCTTCEEEE
T ss_pred EEEECCEECC--CCCCCCCCCEEEE
Confidence 4899999885 3678999999987
No 56
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=63.95 E-value=3.9 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.6
Q ss_pred CeEECCEEecCCCceecCCCCEEEE
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
-+.|||+.+.. ..+|++||.|.|
T Consensus 69 ~v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEEECCEECCC--CCCCCCCCEEEE
Confidence 38999999864 678999999987
No 57
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=63.69 E-value=2.9 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.5
Q ss_pred eEECCEEec--CCCceecCCCCEEEE
Q psy10577 138 IYVDGRPII--ASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~--~g~~~~L~~gd~Iei 161 (203)
++|||+.+. .|..++|++||.|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 899999885 678899999999987
No 58
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=60.46 E-value=3.1 Score=31.05 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEECCEEec--CCCceecCCCCEEEE
Q psy10577 138 IYVDGRPII--ASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~--~g~~~~L~~gd~Iei 161 (203)
++|||+.+. .|..++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 999999765 677899999999987
No 59
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=60.39 E-value=12 Score=32.86 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=35.8
Q ss_pred eEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECC
Q psy10577 118 ACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAG 163 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~ 163 (203)
.++++..+. -.|.-.|. -...|||+++..++++.++.||+++|+.
T Consensus 63 ~~l~f~~~~-~~iAvtGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~ 108 (318)
T 3mml_A 63 FSARVCGGD-VAIAVTGADTDPAVNGIPFGTNSIHHVHDGQVISLGA 108 (318)
T ss_dssp CEEEEESSC-EEEEEEESCCCCEETTEECCTTSCEEECTTCEEECCC
T ss_pred eEEEECcCC-EEEEEECCCCcceECCEEcCCCeEEEECCCCEEEeCC
Confidence 455565431 46676775 6899999999999999999999999994
No 60
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=59.82 E-value=7.4 Score=27.10 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=19.6
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
.+.|||+.+.+ ...|+.||.|.|.
T Consensus 27 ~V~VNg~~~~~--~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKA--SKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCT--TCBCCTTCEEEEC
T ss_pred cEEECCEEcCC--CCCcCCCCEEEEE
Confidence 49999998754 4568899999986
No 61
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=59.66 E-value=9.5 Score=32.08 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=30.2
Q ss_pred eEEEEccCCcEEEEEcCCCCeEECCEEec------CC-CceecCCCCEEE
Q psy10577 118 ACIRMRNNGDFFIANEGKRPIYVDGRPII------AS-NKYKLNHNSIIE 160 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGsng~~VNG~~i~------~g-~~~~L~~gd~Ie 160 (203)
.+|.++++|..|++|++..+|||+.-.+. |+ ..+.+..|+-|.
T Consensus 69 V~L~~~~~G~Vw~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lK 118 (234)
T 1ygs_A 69 VQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIK 118 (234)
T ss_dssp EEEEEETTTEEEEEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEE
T ss_pred eEEEEecCCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEE
Confidence 46778777899999999999999865542 22 234566665544
No 62
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=58.87 E-value=7.1 Score=28.72 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEECCEEecCCC-ceecCCCCEEEE
Q psy10577 138 IYVDGRPIIASN-KYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~~g~-~~~L~~gd~Iei 161 (203)
..|||+++..|- .++|+|||.|+|
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~ 95 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFEL 95 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEE
Confidence 468999999885 689999999987
No 63
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=57.91 E-value=6.5 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=19.2
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
++.|||+.+.. ..+|.+||.|+|=
T Consensus 38 aa~vNg~lvdl--~~~L~~~~~Veiv 61 (73)
T 2kmm_A 38 GAKVNHKLVPL--SYVLNSGDQVEVL 61 (73)
T ss_dssp EEEETTEECCT--TCBCCSSSBEEEE
T ss_pred EEEECCEEeCC--CcCcCCCCEEEEE
Confidence 45789998875 5789999999873
No 64
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=57.79 E-value=5.1 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=26.8
Q ss_pred EEEEEcCCCCeEECCEEecCCCceecCCCCEEEE
Q psy10577 128 FFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEI 161 (203)
Q Consensus 128 f~l~dlGsng~~VNG~~i~~g~~~~L~~gd~Iei 161 (203)
|+++...|+-++-.+..+. -+++.+||+|+|
T Consensus 50 ~~irv~NK~~~L~~~~~L~---d~~ItnGD~Lei 80 (81)
T 2bps_A 50 HWIRVVNKDKVFSGECKLS---DCGITNGDRLEI 80 (81)
T ss_dssp CEEEEGGGTEEEETTSBTG---GGTCCTTCEEEE
T ss_pred CEEEEecCCEEEcCCCEEe---eCCcCCCCEEEE
Confidence 8999999987777777776 688999999997
No 65
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=56.08 E-value=5.2 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=18.7
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
-+.|||+.+++.+ .+ +||.|+|=
T Consensus 38 vV~vNG~~v~~d~--~l-~GD~VeIv 60 (74)
T 2l32_A 38 TVLVDGRPVPEDQ--SV-EVDRVKVL 60 (74)
T ss_dssp CEECCCCCCCTTS--SS-CCCCEEEC
T ss_pred EEEECCEECCHHH--CC-CCCEEEEE
Confidence 5899999998877 34 59999984
No 66
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=54.69 E-value=8.3 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.0
Q ss_pred eEECCEEec--CCCceecCCCCEEEE
Q psy10577 138 IYVDGRPII--ASNKYKLNHNSIIEI 161 (203)
Q Consensus 138 ~~VNG~~i~--~g~~~~L~~gd~Iei 161 (203)
++|||+.+. .+...+|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 899999865 355789999999876
No 67
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=54.27 E-value=26 Score=28.93 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=30.4
Q ss_pred EEEEEeec-eEEEee-cCceEECCCCCCCCeeeecCCCCCCccccccceEEEEccCCcEEE
Q psy10577 72 YAVLRGRA-VRYLMK-FRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFI 130 (203)
Q Consensus 72 lavL~G~~-~~~~m~-~~~i~IGR~s~~~~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l 130 (203)
|.+..+.. ..+.+. .+.++||+..++ ||-|.. . ..|++|.+++++.|.+
T Consensus 4 l~i~y~~~~~~~~L~~~~~~tiG~~~~~---~itl~~-----~--~~~i~l~~~~~~~~~v 54 (238)
T 1wv3_A 4 LIIKYNKQLKMLNLRDGKTYTISEDERA---DITLKS-----L--GEVIHLEQNNQGTWQA 54 (238)
T ss_dssp EEEEETTEEEEEECCTTCCEEEESCTTS---SEECTT-----C--CCCEEEEECTTSCEEE
T ss_pred EEEEECCEEEEEecCCCcEEEECCCccc---eEEecC-----C--CccEEEEEccCCeEEE
Confidence 44444433 356565 688999986543 444421 1 7788888875467776
No 68
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=54.14 E-value=13 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.353 Sum_probs=23.5
Q ss_pred eEEEEccCCcEEEEEcCCCCeEECCEEe
Q psy10577 118 ACIRMRNNGDFFIANEGKRPIYVDGRPI 145 (203)
Q Consensus 118 A~I~~~~dg~f~l~dlGsng~~VNG~~i 145 (203)
.+|.++++|+.|++|++..+|||+.-.+
T Consensus 103 V~L~~~~~G~Vwl~nlS~~~IFVqS~~l 130 (268)
T 1dd1_A 103 VQLECKGEGDVWVRCLSDHAVFVQSYYL 130 (268)
T ss_dssp EEEEEETTTEEEEEECSSSCEEEECHHH
T ss_pred eEEEEecCCcEEEEecCCCCEEEcCCCc
Confidence 5777776789999999999999986554
No 69
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=51.07 E-value=9 Score=30.32 Aligned_cols=26 Identities=12% Similarity=0.359 Sum_probs=21.6
Q ss_pred CeEECCEEecC--CCceecCCCCEEEEC
Q psy10577 137 PIYVDGRPIIA--SNKYKLNHNSIIEIA 162 (203)
Q Consensus 137 g~~VNG~~i~~--g~~~~L~~gd~Ieig 162 (203)
-+.|||+.+.. +...+|++||.|.|=
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 49999999975 336799999999983
No 70
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=48.04 E-value=17 Score=33.70 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=35.1
Q ss_pred ceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEEC
Q psy10577 117 QACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 117 HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
-.++++..+ -.|.-.|. -...|||+++..++.+.++.||+++||
T Consensus 280 G~~l~f~~~--~~iAvtGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g 324 (494)
T 3oep_A 280 GPVLTALRD--LVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFR 324 (494)
T ss_dssp CCEEEESSC--EEEEEEESSEEEEETTEEECSSEEEEECTTCEEEEE
T ss_pred ceEEEEcCC--eEEEEECCCCcceECCEEccCCeEEEECCCCEEEeC
Confidence 344555433 46777776 589999999999999999999999999
No 71
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=45.88 E-value=17 Score=27.43 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=22.6
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC--CEEEEEEe
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA--GLHFTFLV 170 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig--~~~f~F~~ 170 (203)
.|.|||+.+.++ ..|+.||.|.|. +..+.+.+
T Consensus 35 ~V~VNG~~vk~s--~~V~~GD~I~I~~~~~~~~~~v 68 (133)
T 1dm9_A 35 KVHYNGQRSKPS--KIVELNATLTLRQGNDERTVIV 68 (133)
T ss_dssp CEEETTEECCTT--CBCCTTCEEEEEETTEEEEEEE
T ss_pred cEEECCEEcCCC--CEeCCCCEEEEEeCCceeeEEE
Confidence 499999998653 457889998874 44444444
No 72
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=45.85 E-value=21 Score=29.88 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=44.5
Q ss_pred EEEeecCceEE--CCCCCCCCeeeecCCC---CCCc--cccccc----eEEEEccCCcEEEEEcCCCCeEECCEEec---
Q psy10577 81 RYLMKFRDVTL--GRSTADHSVDIDLSLE---GPAW--KVSRRQ----ACIRMRNNGDFFIANEGKRPIYVDGRPII--- 146 (203)
Q Consensus 81 ~~~m~~~~i~I--GR~s~~~~vDIDLs~e---g~~~--~ISR~H----A~I~~~~dg~f~l~dlGsng~~VNG~~i~--- 146 (203)
.|..+++.++| +-...+ .--+-|... .... .--|+| .+|++++ |..|++|++..++||+...+.
T Consensus 49 ~f~~~~~~v~IDGf~dps~-~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~~-G~V~~~nlS~~~IFVqS~~~n~~~ 126 (227)
T 1khx_A 49 TFHASQPSLTVDGFTDPSN-SERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRY 126 (227)
T ss_dssp CEEECSSEEEEESSCCSSC-TTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEET-TEEEEEECSSSCEEEECHHHHHHT
T ss_pred eEEecCCEEEEeCccCCCC-CCeeecccccCCCCcHHHHHHHHhhcCceEEEEEC-CEEEEEEcCCCCEEEeCCCccccc
Confidence 47778888888 333222 222333221 1111 223444 5778774 899999999999999755432
Q ss_pred ---CCCceecCCCCEEE
Q psy10577 147 ---ASNKYKLNHNSIIE 160 (203)
Q Consensus 147 ---~g~~~~L~~gd~Ie 160 (203)
+...+++..|+-+.
T Consensus 127 ~~~~~tV~Ki~pg~~lK 143 (227)
T 1khx_A 127 GWHPATVCKIPPGCNLK 143 (227)
T ss_dssp TCCTTCCEEECTTCEEE
T ss_pred CCCcCceEEeCCCCeEE
Confidence 22334556555433
No 73
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=39.68 E-value=18 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred CCceecCCCCEEEECCEEEEEEeChHH
Q psy10577 148 SNKYKLNHNSIIEIAGLHFTFLVNQSL 174 (203)
Q Consensus 148 g~~~~L~~gd~Ieig~~~f~F~~n~~~ 174 (203)
++.=.|.||++|++||..|++.....+
T Consensus 223 ~EsN~L~DGtLIDLCGaTLLWRSaegL 249 (263)
T 3ega_A 223 SETNVLQDGSLIDLCGATLLWRTADGL 249 (263)
T ss_dssp TCCSBCCTTCEEECSSCEEEEEEC---
T ss_pred CccceeccCceeeecCceeeeechhcc
Confidence 444579999999999999999876544
No 74
>3vwc_A Serine protease inhibitor 1; sulphur SAD phasing, beta trefoil, serine proteas hydrolase inhibitor; 1.50A {Coprinopsis cinerea} PDB: 3n0k_A
Probab=36.58 E-value=64 Score=25.24 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=38.4
Q ss_pred EEEeecCce--EECCCCCC-C----CeeeecCCCCCCccccccceEEEEccCCcEEEEEcCCCCeEECCEEec
Q psy10577 81 RYLMKFRDV--TLGRSTAD-H----SVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII 146 (203)
Q Consensus 81 ~~~m~~~~i--~IGR~s~~-~----~vDIDLs~eg~~~~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~ 146 (203)
+|+|+++.- .|||+-.. . +.-+-+. ....|-+.-.|.-. ++.|+|...|..-+-+||+...
T Consensus 6 ~Y~I~sk~~~~~lgR~~~EDrSL~PKrV~~~p----~~~~~~~~w~ve~~-g~~Y~L~~~G~Pta~iDg~VFa 73 (149)
T 3vwc_A 6 TYEVTSKVNGLHVGRPLAEDRSLLPKRIRVLP----EDNNSGNSWVVEKD-DDAYILYCKGAPVAPQEGKLFA 73 (149)
T ss_dssp EEEEEETTTCCBEECCSCCCSSCSCEECEECC----TTSCTTCCEEEEEE-TTEEEEEETTEEEEEETTEEEE
T ss_pred eEEEEecCCCceeeechhccCCcCcceEEEeC----CCCcccceEEEEec-CCEEEEEeCCCCceeeCCcEEE
Confidence 689999865 99999643 1 1112221 12333344555554 4569999999887888887653
No 75
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=35.63 E-value=28 Score=25.00 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=40.4
Q ss_pred EEEEEcCCCCeEECCEEecCCCce----ecCCCCEE-EECCEEEEEEeChHHHHHHHcCCC
Q psy10577 128 FFIANEGKRPIYVDGRPIIASNKY----KLNHNSII-EIAGLHFTFLVNQSLIQSLRADPK 183 (203)
Q Consensus 128 f~l~dlGsng~~VNG~~i~~g~~~----~L~~gd~I-eig~~~f~F~~n~~~v~~ir~~~~ 183 (203)
|.|.+-|...+|| +.|.+|..+ .|+-||.| +|.+..+.=..+.++++.+|....
T Consensus 20 ~tI~~~g~g~~~I--~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~ 78 (95)
T 3gge_A 20 LTITDNGVGYAFI--KRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78 (95)
T ss_dssp EEEECSSSSCCEE--EEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred EEEEcCCCCcEEE--EEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence 6676555555666 456666543 69999988 899998888888899999987644
No 76
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=33.93 E-value=37 Score=28.67 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=46.1
Q ss_pred EEEeecCceEE--CCCCCCCCeeeecCCC---CCCcc--ccccc----eEEEEccCCcEEEEEcCCCCeEECCEEe----
Q psy10577 81 RYLMKFRDVTL--GRSTADHSVDIDLSLE---GPAWK--VSRRQ----ACIRMRNNGDFFIANEGKRPIYVDGRPI---- 145 (203)
Q Consensus 81 ~~~m~~~~i~I--GR~s~~~~vDIDLs~e---g~~~~--ISR~H----A~I~~~~dg~f~l~dlGsng~~VNG~~i---- 145 (203)
.|..+.+.++| +....+..--+-|... ..... --|+| .+|.++ +|..|++|++..+|||+...+
T Consensus 66 ~F~a~~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~-~G~V~~~nlS~~~IFVqS~~~n~~~ 144 (245)
T 3gmj_D 66 VFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYV-TGEVYAECLSDSAIFVQSRNCNYQH 144 (245)
T ss_dssp EEEECSSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEE-TTEEEEEECSSSCEEEEEHHHHHHT
T ss_pred ceeecCCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEE-CCEEEEEecCCCcEEECCCcccccC
Confidence 46688888888 4444332123333221 11222 22333 567776 489999999999999984432
Q ss_pred --cCCCceecCCCCEEE
Q psy10577 146 --IASNKYKLNHNSIIE 160 (203)
Q Consensus 146 --~~g~~~~L~~gd~Ie 160 (203)
.+...+++..|+-+.
T Consensus 145 g~~~~tV~KI~pg~slK 161 (245)
T 3gmj_D 145 GFHPSTVCKIPPGCSLK 161 (245)
T ss_dssp TCCTTCCEEECTTCEEE
T ss_pred CCCccceEEeCCCCeEE
Confidence 233455666776555
No 77
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=33.78 E-value=8.4 Score=26.34 Aligned_cols=19 Identities=47% Similarity=0.917 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcceeee
Q psy10577 39 EKELKKVEEEMKNWAVIVD 57 (203)
Q Consensus 39 ~~~i~~Le~~~~~~~~~v~ 57 (203)
.+++.+||.++..|..+-|
T Consensus 19 ekelaqlekelqawncicd 37 (80)
T 2lq4_p 19 EKELAQLEKELQAWNCICD 37 (80)
T ss_dssp HTTHHHHHHHHTTTCSSCC
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 8899999999999986643
No 78
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=32.57 E-value=35 Score=26.47 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=27.0
Q ss_pred cccccceEEEEccCCcEEEEEcCCCCeEECCEEec-CCCceecCCCCEEEECCE
Q psy10577 112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 112 ~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~-~g~~~~L~~gd~Ieig~~ 164 (203)
..||.+|.=... .| .+.|||+.+. ++ ..++.||.|++.+.
T Consensus 63 ~~SR~~ar~lI~-~G----------~V~VNG~~v~~ps--~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 63 ARTRRQARQLVT-HG----------HILVDGSRVNIPS--YRVKPGQTIAVREK 103 (159)
T ss_dssp CSSHHHHHHHHH-TT----------CEEETTEECCCSS--CBCCTTCEEEECGG
T ss_pred cCCHHHHHHHHH-CC----------CEEECCEEeCcCC--cEeCCCCEEEEeCc
Confidence 357777653333 22 3899999984 54 45678999999754
No 79
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=32.15 E-value=15 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=18.4
Q ss_pred eEECCEEecCCCceecCCCCEEEEC
Q psy10577 138 IYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 138 ~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
+.+||+.+. ....|+|||+|+|=
T Consensus 63 aK~~~qrVg--ldh~L~d~DVV~Iv 85 (93)
T 2eki_A 63 VKHNPQKVG--KDHTLEDEDVIQIV 85 (93)
T ss_dssp SSSSSEEEC--SSCCCCSSEEECEE
T ss_pred ccCCCEECC--CCcEecCCCEEEEE
Confidence 556888876 46789999999983
No 80
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=32.11 E-value=29 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=23.2
Q ss_pred CeEECCEEec-CCCceecCCCCEEEECCEEEEEE
Q psy10577 137 PIYVDGRPII-ASNKYKLNHNSIIEIAGLHFTFL 169 (203)
Q Consensus 137 g~~VNG~~i~-~g~~~~L~~gd~Ieig~~~f~F~ 169 (203)
.++|||+.+. + ...++.||.|++.+..++|+
T Consensus 29 ~V~VNG~~v~~~--~~~v~~gD~I~v~~~~i~~e 60 (234)
T 1ksk_A 29 RVTVDGEIVRNA--AFKLLPEHDVAYDGNPLAQQ 60 (234)
T ss_dssp CEEETTEECCCT--TCEECTTCCEEETTEEECCC
T ss_pred eEEECCEEeCCC--CCCCCCCCEEEEeCeEeecC
Confidence 4889999985 4 35678899999987655444
No 81
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=31.80 E-value=40 Score=34.61 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=36.3
Q ss_pred ceEEEEccCCcEEEEEcCC-CCeEECCEEecCCCceecCCCCEEEECCE
Q psy10577 117 QACIRMRNNGDFFIANEGK-RPIYVDGRPIIASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 117 HA~I~~~~dg~f~l~dlGs-ng~~VNG~~i~~g~~~~L~~gd~Ieig~~ 164 (203)
-.++++..+ -.|.-.|. -...|||+++..++++.++.||++.||..
T Consensus 536 g~~l~f~~~--~~ia~tGa~~~~~l~g~~~~~~~~~~v~~G~~L~~g~~ 582 (1236)
T 3va7_A 536 GPKLLFHTE--TVIAVSGGTVSCTLNDAQIAQNEPIEVKRGDILSVGKV 582 (1236)
T ss_dssp CCEEEESSC--EEEEEEEEEEEEEETTEECCTTSCEEECSSCEEEEEEE
T ss_pred ceEEEECCc--eEEEEECCCCcceECCEEccCCeEEEeCCCCEEEeCCC
Confidence 345555533 46777775 58899999999999999999999999953
No 82
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=28.94 E-value=48 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.348 Sum_probs=30.6
Q ss_pred cceEEEEccCCcEEEEEcCCCCeEECCEEecCCCceecCC--CCEEEECC
Q psy10577 116 RQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNH--NSIIEIAG 163 (203)
Q Consensus 116 ~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~~g~~~~L~~--gd~Ieig~ 163 (203)
.+|.++-..++.||+...+ +||-..+.||.++.|.. ..++++-+
T Consensus 31 ~~~iVkss~g~~~~V~v~~----~Vd~~~LkpG~rVaLn~~s~~Iv~vLp 76 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSH----FVNPDDLAPGKRVCLNQQTLTVVDVLP 76 (85)
T ss_dssp TEEEEEETTSSEEEEEBCT----TSCGGGCCTTCEEEECTTTCCEEEECC
T ss_pred CEEEEEeCCCCeEEEEecC----ccCHHHCCCCCEEEECCcccCHhhhhh
Confidence 3677776666778877665 56767788888888886 45555543
No 83
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=28.16 E-value=27 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=15.8
Q ss_pred cccchhH-HHHHHHHHHHhhh
Q psy10577 32 LNHNSII-EKELKKVEEEMKN 51 (203)
Q Consensus 32 L~~El~~-~~~i~~Le~~~~~ 51 (203)
.+.||+. |-.|++||+++.+
T Consensus 31 iEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 31 IEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 4555555 9999999999876
No 84
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=23.74 E-value=41 Score=27.41 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=21.2
Q ss_pred CeEECCEEec-CCCceecCCCCEEEECCEEE
Q psy10577 137 PIYVDGRPII-ASNKYKLNHNSIIEIAGLHF 166 (203)
Q Consensus 137 g~~VNG~~i~-~g~~~~L~~gd~Ieig~~~f 166 (203)
.++|||+++. + ...+..||.|.+.+..+
T Consensus 28 ~V~VNG~~v~~~--~~~v~~gD~I~v~~~~i 56 (243)
T 1vio_A 28 AVKINGEIVKSG--SVQISQEDEIYFEDELL 56 (243)
T ss_dssp CEEETTEECCCT--TCEECTTSCEEETTEEC
T ss_pred cEEECCEEeCCC--CCCcCCCCEEEEecccc
Confidence 4889999984 4 34678899999976543
No 85
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=23.21 E-value=55 Score=26.59 Aligned_cols=40 Identities=40% Similarity=0.522 Sum_probs=28.1
Q ss_pred cccccceEEEEccCCcEEEEEcCCCCeEECCEEec-CCCceecCCCCEEEECCE
Q psy10577 112 KVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPII-ASNKYKLNHNSIIEIAGL 164 (203)
Q Consensus 112 ~ISR~HA~I~~~~dg~f~l~dlGsng~~VNG~~i~-~g~~~~L~~gd~Ieig~~ 164 (203)
..||.+|.=... .| .+.|||+.+. ++ ..+..||.|++.+.
T Consensus 111 ~~SR~~arqLI~-~G----------~V~VNG~~v~~ps--~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 111 AVSRRQARQLVR-HG----------HITVNGRRVDLPS--YRVRPGDEIAVAEK 151 (209)
T ss_dssp SSSHHHHHHHHH-TT----------CEEETTEECCCTT--CBCCTTCEEEECGG
T ss_pred cCCHHHHHHHHH-CC----------CEEECCEEeCcCC--cCcCCCCEEEEcCc
Confidence 468888754333 23 2899999984 54 45778999999754
No 86
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.27 E-value=17 Score=24.56 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=19.2
Q ss_pred eEECCEEec-CCCceecCCCCEEEEC
Q psy10577 138 IYVDGRPII-ASNKYKLNHNSIIEIA 162 (203)
Q Consensus 138 ~~VNG~~i~-~g~~~~L~~gd~Ieig 162 (203)
++|||+.+. |+..+...++|.|++.
T Consensus 35 V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 35 VRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp EEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred EEECCEEECCCCCCCCCCCCcEEEEE
Confidence 889999885 7777777667888754
No 87
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=22.11 E-value=44 Score=22.69 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=18.8
Q ss_pred CeEECCEEecCCCceecCCCCEEEEC
Q psy10577 137 PIYVDGRPIIASNKYKLNHNSIIEIA 162 (203)
Q Consensus 137 g~~VNG~~i~~g~~~~L~~gd~Ieig 162 (203)
+..|||+.+. -..+|.++|.|+|=
T Consensus 48 aakvNg~l~d--L~~~l~~d~~ve~v 71 (88)
T 1wwt_A 48 IAKVNNVVWD--LDRPLEEDCTLELL 71 (88)
T ss_dssp CEEESSSEEC--SSSCCCSSEEEEEC
T ss_pred EEEECCEEEC--CCcCcCCCCEEEEE
Confidence 5678988776 46789999988875
Done!