RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10577
(203 letters)
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic
and prokaryotic proteins. Putative nuclear signalling
domain. FHA domains may bind phosphothreonine,
phosphoserine and sometimes phosphotyrosine. In
eukaryotes, many FHA domain-containing proteins localize
to the nucleus, where they participate in establishing
or maintaining cell cycle checkpoints, DNA repair, or
transcriptional regulation. Members of the FHA family
include: Dun1, Rad53, Cds1, Mek1,
KAPP(kinase-associated protein phosphatase),and Ki-67 (a
human nuclear protein related to cell proliferation).
Length = 102
Score = 55.5 bits (134), Expect = 2e-10
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 82 YLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIR-MRNNGDFFIANEGKRPIYV 140
YL T+GR + + + +D VSRR A IR + G I +V
Sbjct: 17 YLDPGGTYTIGRDSDNCDIVLDDP------SVSRRHAVIRYDGDGGVVLIDLGSTNGTFV 70
Query: 141 DGRPIIASNKYKLNHNSIIEIAGLHFTFLVN 171
+G+ + +L +I + +F
Sbjct: 71 NGQRVSPGEPVRLRDGDVIRLGNTSISFRFE 101
Score = 30.4 bits (69), Expect = 0.20
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 1 MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIE 39
+ G I +V+G+ + +L +I
Sbjct: 52 DGDGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDVIR 90
>gnl|CDD|215951 pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain
is a phosphopeptide binding motif.
Length = 67
Score = 48.0 bits (115), Expect = 4e-08
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG-KRPIYVDGRPIIA 147
VT+GR DI L VSRR A IR G F++ + G +V+G+ +
Sbjct: 1 VTIGR---SPDCDIVLDDPS----VSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLG- 52
Query: 148 SNKYKLNHNSIIEI 161
+L +I +
Sbjct: 53 PEPVRLRDGDVIRL 66
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain. Found in eukaryotic
and prokaryotic proteins. Putative nuclear signalling
domain.
Length = 52
Score = 41.8 bits (99), Expect = 5e-06
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIYVDGRPI 145
VT+GRS+ D + +D +SRR A I G F++ + G +V+G+ I
Sbjct: 1 VTIGRSSEDCDIQLDGP------SISRRHAVIVYDGGGRFYLIDLGSTNGTFVNGKRI 52
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 135
G A + T+GRS D D L P VS R A IR R +G + + +
Sbjct: 13 PGIAAQKTFGTNGGTIGRSE-----DCDWVLPDPERHVSGRHARIRYR-DGAYLLTDLST 66
Query: 136 RPIYVD--GRPIIASNKYKLNHNSIIEI 161
++++ G P+ N +L + +
Sbjct: 67 NGVFLNGSGSPLGRGNPVRLEQGDRLRL 94
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 30.2 bits (69), Expect = 0.33
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 38 IEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLM 84
E LK++ ++ +N +I+ TGS++ L K+ L GRA +
Sbjct: 75 WEDALKRLYDDGRNLRIIL---TGSSSLLLSKEIATSLAGRAEELEL 118
>gnl|CDD|184340 PRK13809, PRK13809, orotate phosphoribosyltransferase;
Provisional.
Length = 206
Score = 29.8 bits (67), Expect = 0.70
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 5 GDFFIANEGKRPIYVDGRPIIAS 27
G F +A+ + PIYVD R +I+S
Sbjct: 26 GKFILASGEETPIYVDMRLVISS 48
Score = 29.8 bits (67), Expect = 0.70
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 126 GDFFIANEGKRPIYVDGRPIIAS 148
G F +A+ + PIYVD R +I+S
Sbjct: 26 GKFILASGEETPIYVDMRLVISS 48
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 30.0 bits (67), Expect = 0.83
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR 136
G V YL K RD L R D+D+ PA + +R + N GD+ +
Sbjct: 126 GDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADT 185
Query: 137 PIYVDGRPIIASNKY 151
YV I ++KY
Sbjct: 186 TQYVPMLEIKEASKY 200
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].
Length = 191
Score = 29.2 bits (65), Expect = 0.99
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 113 VSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAG 163
VSRR A +R N F YV+G + + L +I + G
Sbjct: 108 VSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGG 156
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 29.8 bits (67), Expect = 1.0
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR 136
G+A + L +GRS D D ++ P VS++ I R +G F + +
Sbjct: 16 GKAAQKLFDRGGGVIGRSP-----DCDWQIDDPERFVSKQHCTISYR-DGGFCLTDTSNG 69
Query: 137 PIYVDGRPIIA-SNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTTSSSSSTS 193
+ V+G + +L I I ++++ D S+ SST
Sbjct: 70 GLLVNGSDLPLGEGSARLQQGDEILIGRYIIRVHLSRAEPDESDPDTGSPQSAVSSTD 127
>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor
protein C (SHC). SHC is involved in a wide variety of
pathways including regulating proliferation,
angiogenesis, invasion and metastasis, and bone
metabolism. An adapter protein, SHC has been implicated
in Ras activation following the stimulation of a number
of different receptors, including growth factors
[insulin, epidermal growth factor (EGF), nerve growth
factor, and platelet derived growth factor (PDGF)],
cytokines [interleukins 2, 3, and 5], erythropoietin,
and granulocyte/macrophage colony-stimulating factor,
and antigens [T-cell and B-cell receptors]. SHC has been
shown to bind to tyrosine-phosphorylated receptors, and
receptor stimulation leads to tyrosine phosphorylation
of SHC. Upon phosphorylation, SHC interacts with another
adapter protein, Grb2, which binds to the Ras GTP/GDP
exchange factor mSOS which leads to Ras activation. SHC
is composed of an N-terminal domain that interacts with
proteins containing phosphorylated tyrosines, a
(glycine/proline)-rich collagen-homology domain that
contains the phosphorylated binding site, and a
C-terminal SH2 domain. SH2 has been shown to interact
with the tyrosine-phosphorylated receptors of EGF and
PDGF and with the tyrosine-phosphorylated C chain of the
T-cell receptor, providing one of the mechanisms of
T-cell-mediated Ras activation. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 104
Score = 26.5 bits (59), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 106 LEGPAW---KVSRRQACIRMRNNGDFFI 130
L G W K+SRR A ++ +GDF +
Sbjct: 4 LRGEPWYHGKMSRRDAESLLQTDGDFLV 31
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 27.7 bits (62), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 36 SIIEKELKKVEEEMKNWAVIVDHVTGSNTPELDKQTYAVLRGRAVRYLMKFRDVTLGR 93
SI+ L++ EE ++W +VD + + + AV R R R+L DV R
Sbjct: 261 SIVRLLLREAEEAGQDWRDVVDGLRPQ-GQWIWQNLPAVERRRFERHLRPIWDVHRFR 317
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 11 NEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEM 49
+ G RP+ V+ + S K K + + I E E +K+ EE+
Sbjct: 490 SSGVRPVSVEKNTLTLSFKSKFHKDKIEEPENRKITEEL 528
>gnl|CDD|238270 cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It
catalyzes the reversible decarboxylation and
phosphorylation of oxaloacetate to yield
phosphoenolpyruvate and carbon dioxide, using a
nucleotide molecule (ATP) for the phosphoryl transfer,
and has a strict requirement for divalent metal ions
for activity. PEPCK's separate into two phylogenetic
groups based on their nucleotide substrate specificity,
this model describes the ATP-dependent groups.
Length = 508
Score = 26.8 bits (60), Expect = 8.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 61 GSNTPELDKQTYAVLRGRAVRYL 83
G + ++T+ +LR RAV YL
Sbjct: 60 GKVNQPISEETFEILRERAVDYL 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,198,073
Number of extensions: 952237
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1074
Number of HSP's successfully gapped: 24
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)