RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10577
(203 letters)
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 47.1 bits (112), Expect = 2e-07
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 139
+ + GR + D+ ++ P VS++ I + + + N P
Sbjct: 27 HFPLSLSTCLFGRGI-----ECDIRIQLPV--VSKQHCKIE-IHEQEAILHNFSSTNPTQ 78
Query: 140 VDGRPIIASNKYKLNHNSIIEIAGLHFTF 168
V+G I +L H +I I F +
Sbjct: 79 VNGSVI--DEPVRLKHGDVITIIDRSFRY 105
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 45.7 bits (108), Expect = 5e-07
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 135
R + Y ++ +G D D + L GP + + +
Sbjct: 25 RDKPKLYRLQLSVTEVGTEKFD---DNSIQLFGP--GIQPHHCDLTNMDGVVTVTPRSMD 79
Query: 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVN 171
YVDG+ I S L ++ H F
Sbjct: 80 AETYVDGQRI--SETTMLQSGMRLQFGTSHV-FKFV 112
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 46.0 bits (109), Expect = 7e-07
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 74 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 131
G + L +VT+GR V L + +SR ++ G + I
Sbjct: 13 RRVGMSAGWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 69
Query: 132 NEGKRP-IYVDGRPIIASNKYKLNHNSIIEI 161
+ ++++ + Y ++ I++
Sbjct: 70 DNKSLNGVWLNRARLEPLRVYSIHQGDYIQL 100
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 45.7 bits (108), Expect = 9e-07
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 139
L +VT+GR V L + +SR ++ G + I + ++
Sbjct: 30 LLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVW 86
Query: 140 VDGRPIIASNKYKLNHNSIIEI 161
++ + Y ++ I++
Sbjct: 87 LNRARLEPLRVYSIHQGDYIQL 108
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 45.1 bits (106), Expect = 2e-06
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 9/123 (7%)
Query: 57 DHVTGSNTPELDKQTYAVLRGRAVRYLMKF---RDVTLGRSTADHSV--DIDLSLEGPAW 111
E +A L + + GR + + L
Sbjct: 15 QEPEDQEPEEPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYR 74
Query: 112 KVSRRQACIRMRNNGD----FFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFT 167
S++ I +I + +V+ + + LN+NS I ++
Sbjct: 75 TYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNK 134
Query: 168 FLV 170
V
Sbjct: 135 VFV 137
Score = 26.9 bits (59), Expect = 3.7
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 2 RNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSII 38
+N+ +I + +V+ + + LN+NS I
Sbjct: 90 KNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEI 126
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 43.7 bits (103), Expect = 4e-06
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIAS 148
T GR+ D L + ++S + I + +G+ + + +++G+ + +
Sbjct: 38 WTFGRNP-----ACDYHLGNIS-RLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKN 91
Query: 149 NKYKLNHNSIIEIAG------LHFTFLVNQSLIQSL 178
+ L+ I + L +N Q L
Sbjct: 92 SNQLLSQGDEITVGVGVESDILSLVIFINDKFKQCL 127
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 42.9 bits (100), Expect = 8e-06
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 80 VRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD----FFIANEGK 135
+ Y +K +G++ A+ DI LS + R + + +
Sbjct: 24 LLYYIKDGITRVGQADAERRQDIVLSGAH----IKEEHCIFRSERSNSGEVIVTLEPCER 79
Query: 136 RPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRADPKGTTS 187
YV+G+ + S +L + I + H + ++ R G +S
Sbjct: 80 SETYVNGKRV--SQPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKTSGPSS 129
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIAS 148
T GR+ D L + ++S + I + +G+ + + +++G+ + +
Sbjct: 66 WTFGRNP-----ACDYHLGNIS-RLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKN 119
Query: 149 NKYKLNHNSIIEIAG------LHFTFLVNQSLIQSLRA 180
+ L+ I + L +N Q L
Sbjct: 120 SNQLLSQGDEITVGVGVESDILSLVIFINDKFKQCLEQ 157
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 41.3 bits (97), Expect = 2e-05
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 75 LRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG 134
G A+ + +GR + +++++ +S + I ++G++ I + G
Sbjct: 22 REGDALD-YKPGSTIRVGRIVRGN----EIAIKDAG--ISTKHLRIE-SDSGNWVIQDLG 73
Query: 135 KR-PIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169
++ + L +I++ +
Sbjct: 74 SSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV 109
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 41.4 bits (97), Expect = 3e-05
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 74 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 131
V RG R+L+ T GR + D+ L+ VSRR A R N G+F +
Sbjct: 51 VKRGPNAGARFLLDQPTTTAGRHP-----ESDIFLDDVT--VSRRHAEFR-INEGEFEVV 102
Query: 132 NEGKR-PIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169
+ G YV+ P N + I+I FL
Sbjct: 103 DVGSLNGTYVNREPR---NAQVMQTGDEIQIGKFRLVFL 138
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 40.7 bits (95), Expect = 4e-05
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 97 DHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHN 156
+S DI L G + I + + G + + +V+G + S+ +L+H
Sbjct: 55 ANSQDIQLCGMG----ILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSV--SSPIQLHHG 108
Query: 157 SIIEIAGLHFTFLVN 171
I HF F +N
Sbjct: 109 DRILWGNNHF-FRLN 122
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 40.3 bits (94), Expect = 1e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 139
R+L+ + GR D D+ L+ VSRR A R N +F + + G Y
Sbjct: 69 RFLLDQAITSAGRHP-----DSDIFLDDVT--VSRRHAEFR-LENNEFNVVDVGSLNGTY 120
Query: 140 VDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169
V+ P+ + L + ++I FL
Sbjct: 121 VNREPV---DSAVLANGDEVQIGKFRLVFL 147
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 38.9 bits (91), Expect = 1e-04
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 74 VLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIA 131
V RG R+L+ + GR D D+ L+ VSRR A R G+F +
Sbjct: 16 VKRGPNAGSRFLLDQPTTSAGRHP-----DSDIFLDDVT--VSRRHAEFR-LEGGEFQVV 67
Query: 132 NEGKRP-IYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169
+ G YV+ P+ + L + ++I FL
Sbjct: 68 DVGSLNGTYVNREPV---DSAVLANGDEVQIGKFRLVFL 103
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 38.4 bits (90), Expect = 2e-04
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR-PIY 139
Y ++ +GR D L VSRR IR + +A+
Sbjct: 17 TYQLREGSNIIGRGQ-----DAQFRLPDTG--VSRRHLEIR-WDGQVALLADLNSTNGTT 68
Query: 140 VDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170
V+ P+ +++L +I + +
Sbjct: 69 VNNAPV---QEWQLADGDVIRLGHSEIIVRM 96
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 37.9 bits (88), Expect = 5e-04
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 77 GRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMR-NNGDFFIANEGK 135
G + + +GRS D ++L P+ +S++ A I + N + + G
Sbjct: 35 GPERDFPLYLGKNVVGRSP-----DCSVALPFPS--ISKQHAVIEISAWNKAPILQDCGS 87
Query: 136 R-PIYVDGRPII--ASNKYKLNHNSIIEIAGLHFTF 168
+ P + ++L +I A +
Sbjct: 88 LNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQY 123
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 37.1 bits (86), Expect = 7e-04
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACI-RMRNNGDFFIANEGKRPIY 139
L++ R+ T+GR DLS VS I +G + +
Sbjct: 18 HVLLRKREWTIGRRR-----GCDLSFPSNKL-VSGDHCRIVVDEKSGQVTLEDTSTSGTV 71
Query: 140 VDGRPIIASNKYKLNHNSIIEIA 162
++ ++ L +I +
Sbjct: 72 INKLKVVKKQTCPLQTGDVIYLV 94
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 39 EK-ELKKVEEEMKNWAVIVDHVTGSNTPEL 67
EK LKK++ +K +A S P L
Sbjct: 18 EKQALKKLQASLKLYA------DDS-APAL 40
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 29.3 bits (66), Expect = 0.41
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 99 SVDIDLSLEGPAW---KVSRRQACIRMRNNGDFFIANEGKRPIYV 140
S ++ L W + R + + ++GDF + + YV
Sbjct: 6 SGEVQKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQEYV 50
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 28.3 bits (63), Expect = 1.1
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGD----FFIANEGKRP------I 138
T+GRS D+ ++ VSR A + +++ D + I + + +
Sbjct: 32 YTIGRSP-----RADIRIKSQF--VSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL 84
Query: 139 YVDGRPIIASNKYKLNHNSIIEI 161
++G+ + ++ + I +
Sbjct: 85 MINGKKV---QEHIIQTGDEIVM 104
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding,
hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Length = 188
Score = 27.8 bits (62), Expect = 2.0
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 13 GKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEMKNWAVIVDHVTGSNTPEL 67
G V + +Y L++ L + N ++VDH + +
Sbjct: 31 GFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKD 85
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 27.1 bits (60), Expect = 3.9
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 119 CIRMRNNGDFFIANEGKR-PIYVDGRPII 146
+ ++ N F + G + PIY D R +
Sbjct: 38 AVFLQPNDPFTWS-SGMKSPIYCDNRLTL 65
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 26.8 bits (58), Expect = 5.6
Identities = 13/82 (15%), Positives = 26/82 (31%)
Query: 121 RMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLVNQSLIQSLRA 180
+ + FF + +S+ + + FT L +
Sbjct: 349 LLPDLESFFTHDSVSTSSRHSIGSSTSSHVTGAGSSHLGTGGKDKFTDLGEEEEDDFGGL 408
Query: 181 DPKGTTSSSSSTSTGPVASTST 202
P G + S+S S + S+S+
Sbjct: 409 QPSGFAAGSASHSKTVLTSSSS 430
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 25.7 bits (57), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 105 SLEGPAW---KVSRRQACIRMRNNGDFFI 130
L G W K+SRR+A ++ NGDF +
Sbjct: 3 QLRGEPWFHGKLSRREAEALLQLNGDFLV 31
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 25.8 bits (57), Expect = 9.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 119 CIRMRNNGDFFIANEGKR-PIYVDGRPII 146
+ ++ F A G + PIY D R +
Sbjct: 18 AVYLKPEDPFTWA-SGIKSPIYTDNRVTL 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,058,162
Number of extensions: 180449
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 35
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)