RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10577
(203 letters)
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 48.7 bits (115), Expect = 2e-08
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 76 RGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGK 135
L +VT+GR V L + +SR ++ G + I +
Sbjct: 13 MSAGWLLLEDGCEVTVGRG---FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKS 69
Query: 136 R-PIYVDGRPIIASNKYKLNHNSIIEI 161
++++ + Y ++ I++
Sbjct: 70 LNGVWLNRARLEPLRVYSIHQGDYIQL 96
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 45.4 bits (107), Expect = 3e-07
Identities = 8/95 (8%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 75 LRGRAVRYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEG 134
G A+ + +GR + +++++ +S + I +
Sbjct: 22 REGDALD-YKPGSTIRVGRIVRGN----EIAIKDAG--ISTKHLRIESDSGNWVIQDLGS 74
Query: 135 KRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFL 169
++ + L +I++ +
Sbjct: 75 SNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV 109
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 42.7 bits (100), Expect = 2e-06
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 69 KQTYAVLRGRAV--RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNG 126
+Q A L A Y ++ +GR D D+ L+ VSR A I
Sbjct: 3 QQAVAYLHDIASGRGYPLQAAATRIGRLH-----DNDIVLDSAN--VSRHHAVIVDTGTN 55
Query: 127 DFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170
++V I + LN I I FTF +
Sbjct: 56 YVINDLRSSNGVHVQHERI--RSAVTLNDGDHIRICDHEFTFQI 97
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 39.4 bits (91), Expect = 3e-05
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 6/92 (6%)
Query: 89 VTLGRSTADHSV--DIDLSLEGPAWKVSRRQACIRMRNN----GDFFIANEGKRPIYVDG 142
GR + + L S++ I +I + +V+
Sbjct: 22 YWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNT 81
Query: 143 RPIIASNKYKLNHNSIIEIAGLHFTFLVNQSL 174
+ + LN+NS I ++ V L
Sbjct: 82 ELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 113
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 39.0 bits (90), Expect = 7e-05
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 90 TLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKRPIYVDGRPIIASN 149
T GR+ A ++S +S + I + +G+ + + +++G+ + ++
Sbjct: 39 TFGRNPACDYHLGNISR------LSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNS 92
Query: 150 KYKLNHNSIIEIAG------LHFTFLVNQSLIQSL 178
L+ I + L +N Q L
Sbjct: 93 NQLLSQGDEITVGVGVESDILSLVIFINDKFKQCL 127
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.5 bits (73), Expect = 0.008
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 112 KVSRRQA-CIRMRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEIAGLHFTFLV 170
K SR Q + + G P + + + L + + +
Sbjct: 38 KCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGLHPLTL 97
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 31.4 bits (70), Expect = 0.023
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 81 RYLMKFRDVTLGRSTADHSVDIDLSLEGPAWKVSRRQA-CIRMRNNGDFFIANEGKRPIY 139
L++ R+ T+GR VS + +G + +
Sbjct: 18 HVLLRKREWTIGRRRGCDLSF------PSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTV 71
Query: 140 VDGRPIIASNKYKLNHNSIIEIA 162
++ ++ L +I +
Sbjct: 72 INKLKVVKKQTCPLQTGDVIYLV 94
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 30.9 bits (69), Expect = 0.047
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 89 VTLGRSTADHSVDIDLSLEGPAWKVSRRQACIRMRNNGDFFIANEGKR--PIYVDGRPI- 145
V LGR + DL+L+ VS + A I + + + V+ I
Sbjct: 32 VKLGRVS-----PSDLALKDSE--VSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHSIS 84
Query: 146 -------IASNKYKLNHNSIIEIAGLHFTFL 169
N +L + II + ++
Sbjct: 85 HPDLGSRKWGNPVELASDDIITLGTTTKVYV 115
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 28.7 bits (63), Expect = 0.47
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 23 PIIASNKYKLNHNSIIEKELKKVEEEMK----------------NWAVIVDHVTGSNTPE 66
PI Y L+ E++ K ++ + N ++ V +
Sbjct: 310 PISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQ 369
Query: 67 LDKQTYAVLRGRAVRYLMKFRD 88
L KQ + R+L + +
Sbjct: 370 LRKQ-----QESLARHLQTYGE 386
>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 26.5 bits (58), Expect = 1.0
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 105 SLEGPAW---KVSRRQACIRMRNNGDFFIANEGKRP---IYVDGRPIIASNKYKLNHNSI 158
L G W K+SRR+A ++ NGDF + P + + + ++ +
Sbjct: 3 QLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGV 62
Query: 159 IEIAGLHFTFLVNQSLIQSLRADPKGTTSSSS 190
+ F + LI + S+ S
Sbjct: 63 VRTKDHRFESV--SHLISYHMDNHLPIISAGS 92
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.3 bits (58), Expect = 1.7
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 29 KYKLNHNSIIEKELKKVEEEMKNW----AVIVDHVTGSNTPELDKQTYAVLRGRAVRYLM 84
YK H EK + E+ K + VIV+ + +LDK+ Y V V
Sbjct: 6 VYKEEHP--FEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63
Query: 85 KF 86
Sbjct: 64 FL 65
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 26.8 bits (58), Expect = 2.2
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 23 PIIASNKYKLNHNSIIEKELKKVEEEMK----------------NWAVIVDHVTGSNTPE 66
PI+ +N N +ELK+++ E++ + H+ S+ P
Sbjct: 287 PIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPF 346
Query: 67 LDKQTYAVLRGRAV 80
+ ++ ++V
Sbjct: 347 EVRGANQWIKFKSV 360
>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 89
Score = 25.4 bits (55), Expect = 2.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 57 DHVTGSNTPELDKQTYAVL------RGRAVRYLMKFRDVTLG 92
DHV G++ P LD ++ A L +G +L+ RD+ L
Sbjct: 46 DHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLA 87
>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 145
Score = 25.5 bits (56), Expect = 3.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 1 MRNNGDFFIANEGKRPIYVDGRPIIASNKYKLNHNSIIEKELKKVEEEM 49
+RN+ +G +PIY+ +A +K+LK + EE
Sbjct: 60 LRNHQVMLEIMDGNQPIYMHTEEALAELA------GGDKKKLKHIYEEA 102
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 25.4 bits (55), Expect = 3.5
Identities = 5/32 (15%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 16 PIYVDGRPIIASNKYKLNHNSIIEKELKKVEE 47
P+ + + K++ ++I++ L++V+
Sbjct: 125 PLLLQKKKFHGYFKFQ-GQDTILDYTLREVDT 155
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 24.3 bits (52), Expect = 9.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 119 CIRMRNNGDFFIANEGKRPIYVDGRPII 146
+ ++ F A+ K PIY D R +
Sbjct: 16 AVYLKPEDPFTWASGIKSPIYTDNRVTL 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,197
Number of extensions: 34190
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 20
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)