Query psy10581
Match_columns 90
No_of_seqs 89 out of 91
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 22:05:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3681|consensus 99.8 1.3E-19 2.9E-24 156.1 4.2 85 2-86 424-511 (835)
2 PF01044 Vinculin: Vinculin fa 99.6 6.4E-16 1.4E-20 134.7 7.1 67 3-69 543-610 (968)
3 KOG3681|consensus 94.4 0.068 1.5E-06 47.8 4.8 86 2-87 490-603 (835)
4 PF05482 Serendipity_A: Serend 76.4 6.6 0.00014 34.1 5.4 49 17-69 324-372 (552)
5 PF01044 Vinculin: Vinculin fa 67.1 19 0.00041 32.6 6.4 50 12-68 190-244 (968)
6 COG1728 Uncharacterized protei 66.9 34 0.00074 25.3 6.6 69 10-89 41-110 (151)
7 COG3747 Phage terminase, small 62.9 42 0.0009 25.0 6.4 46 14-65 48-93 (160)
8 PF14134 DUF4301: Domain of un 59.8 5.8 0.00013 34.1 1.7 48 40-90 207-274 (513)
9 COG2825 HlpA Outer membrane pr 53.5 38 0.00083 24.6 4.9 45 24-68 28-72 (170)
10 smart00150 SPEC Spectrin repea 50.9 51 0.0011 19.5 5.2 49 12-60 41-94 (101)
11 PF00435 Spectrin: Spectrin re 46.3 57 0.0012 19.3 4.2 50 12-61 44-98 (105)
12 PF01608 I_LWEQ: I/LWEQ domain 46.0 53 0.0012 23.9 4.7 56 5-66 41-96 (152)
13 PF15466 DUF4635: Domain of un 44.2 47 0.001 24.0 4.1 27 41-67 92-118 (135)
14 TIGR01982 UbiB 2-polyprenylphe 40.3 31 0.00067 28.1 3.0 27 11-37 50-76 (437)
15 TIGR02751 PEPCase_arch phospho 39.4 61 0.0013 27.9 4.7 42 43-84 321-375 (506)
16 PTZ00328 eukaryotic initiation 37.7 17 0.00038 27.0 1.1 17 73-89 40-56 (166)
17 cd07038 TPP_PYR_PDC_IPDC_like 37.5 36 0.00077 23.8 2.6 27 57-83 136-162 (162)
18 PF03885 DUF327: Protein of un 36.5 1.4E+02 0.003 21.0 5.5 47 11-61 38-84 (147)
19 PF13498 DUF4122: Domain of un 36.2 1.2E+02 0.0027 23.6 5.5 42 24-71 158-201 (220)
20 PF14818 DUF4482: Domain of un 36.0 69 0.0015 23.2 3.9 27 42-68 22-48 (141)
21 PF08336 P4Ha_N: Prolyl 4-Hydr 33.0 66 0.0014 21.8 3.3 42 41-82 16-59 (134)
22 smart00307 ILWEQ I/LWEQ domain 32.0 2.3E+02 0.0049 21.5 8.0 59 4-68 87-145 (200)
23 PF12486 DUF3702: ImpA domain 30.4 1.9E+02 0.0041 20.9 5.4 53 21-81 19-88 (148)
24 KOG2296|consensus 30.0 1.5E+02 0.0033 26.6 5.7 46 40-86 300-345 (673)
25 COG1647 Esterase/lipase [Gener 29.9 79 0.0017 25.0 3.6 34 35-68 142-175 (243)
26 PLN03107 eukaryotic translatio 29.5 28 0.0006 25.3 1.0 11 79-89 44-54 (159)
27 TIGR02492 flgK_ends flagellar 29.4 2.7E+02 0.0058 21.7 6.5 25 23-47 110-134 (322)
28 PF14010 PEPcase_2: Phosphoeno 28.9 1.3E+02 0.0027 26.0 4.9 36 41-76 317-354 (491)
29 cd04755 Commd7 COMM_Domain con 28.7 97 0.0021 23.0 3.8 24 42-65 85-108 (180)
30 PF03993 DUF349: Domain of Unk 27.4 1.3E+02 0.0028 17.9 3.6 32 22-53 36-67 (77)
31 PF10280 Med11: Mediator compl 27.2 2E+02 0.0044 19.4 7.2 45 39-83 44-90 (117)
32 cd04752 Commd4 COMM_Domain con 26.0 1.2E+02 0.0026 21.8 3.8 28 40-67 74-101 (174)
33 PF01152 Bac_globin: Bacterial 25.9 1.2E+02 0.0027 19.6 3.6 46 22-67 55-107 (120)
34 PF11819 DUF3338: Domain of un 25.3 59 0.0013 23.5 2.1 17 21-37 117-133 (138)
35 KOG0412|consensus 25.3 2E+02 0.0044 26.3 5.7 82 4-87 143-225 (773)
36 PRK04750 ubiB putative ubiquin 24.9 84 0.0018 26.8 3.2 27 11-37 52-78 (537)
37 PF12754 Blt1: Cell-cycle cont 24.1 56 0.0012 26.6 1.9 18 37-54 291-308 (309)
38 PF13711 DUF4160: Domain of un 24.1 61 0.0013 19.6 1.7 15 39-53 52-66 (66)
39 TIGR01558 sm_term_P27 phage te 23.9 2.2E+02 0.0048 18.8 4.8 38 13-56 9-46 (116)
40 KOG2520|consensus 23.4 81 0.0018 28.8 2.9 24 26-53 571-594 (815)
41 cd01119 Chemokine_CC_DCCL Chem 22.9 24 0.00053 21.3 -0.3 21 28-48 40-60 (61)
42 KOG4545|consensus 22.9 2.1E+02 0.0046 21.9 4.7 40 42-81 24-65 (197)
43 PF15543 Toxin_65: Putative to 22.6 4.9 0.00011 28.8 -3.9 51 18-68 46-96 (135)
44 KOG1959|consensus 22.2 95 0.0021 29.0 3.1 42 30-71 80-121 (996)
45 PF00804 Syntaxin: Syntaxin; 22.1 1.6E+02 0.0035 17.9 3.4 21 48-68 1-21 (103)
46 smart00199 SCY Intercrine alph 21.7 24 0.00052 21.0 -0.5 20 28-47 39-58 (59)
47 PF09375 Peptidase_M75: Imelys 21.4 2.3E+02 0.005 21.2 4.7 34 22-59 12-45 (288)
48 TIGR00037 eIF_5A translation i 21.2 50 0.0011 23.0 1.0 11 79-89 30-40 (130)
49 PHA00360 II replication initia 21.2 66 0.0014 27.1 1.8 27 41-67 274-300 (421)
50 PF07034 ORC3_N: Origin recogn 20.7 1.6E+02 0.0034 23.1 3.8 29 40-68 27-55 (330)
51 PF02183 HALZ: Homeobox associ 20.7 1.9E+02 0.0041 16.8 4.1 28 41-68 10-37 (45)
52 COG5621 Predicted secreted hyd 20.4 30 0.00066 28.6 -0.3 14 77-90 196-209 (354)
53 COG2147 RPL19A Ribosomal prote 20.4 52 0.0011 24.3 1.0 39 49-88 92-130 (150)
54 PF06855 DUF1250: Protein of u 20.3 70 0.0015 18.4 1.3 13 43-55 33-45 (46)
No 1
>KOG3681|consensus
Probab=99.77 E-value=1.3e-19 Score=156.06 Aligned_cols=85 Identities=29% Similarity=0.497 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCcee
Q psy10581 2 AGTETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDKE---RIPDKHTY 78 (90)
Q Consensus 2 s~tE~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g---~~~~k~~y 78 (90)
|..|..-.-.++++.|+++||||||+||++|+.+|.||+|+||||+||++|+++|+.||++||+||+.. ...|.|.+
T Consensus 424 s~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~P~sk~A~enme~~k~~w~~~V~~lt~avd~~t~~~dfl~vSE~hi~ 503 (835)
T KOG3681|consen 424 SNNEEGVKIVQHSAAQLESLCPQVINAARILAARPGSKAAQENMETYKNQWEDQVRVLTTAVDDITDIDDFLAVSEEHIL 503 (835)
T ss_pred ccccchhHHHHHHHHHHHhcchHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHH
Confidence 444555556677888899999999999999999999999999999999999999999999999999822 27888888
Q ss_pred eeCCCCCC
Q psy10581 79 MSLPRPGI 86 (90)
Q Consensus 79 ~slprp~k 86 (90)
..++++++
T Consensus 504 ed~~kc~~ 511 (835)
T KOG3681|consen 504 EDVNKCGV 511 (835)
T ss_pred Hhhhhhhh
Confidence 88888764
No 2
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=99.62 E-value=6.4e-16 Score=134.70 Aligned_cols=67 Identities=45% Similarity=0.624 Sum_probs=60.2
Q ss_pred chhHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10581 3 GTETLQVAT-YHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDK 69 (90)
Q Consensus 3 ~tE~L~vta-~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~ 69 (90)
.++...+.. ++++.+|+.|+||||+||++|+.||+||+|+||||+||++|++.+++|+.+||+|+|.
T Consensus 543 ~~d~~~v~~I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~~L~~~vd~i~d~ 610 (968)
T PF01044_consen 543 CTDEETVKEIRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFREAWEDAVEDLTEAVDEITDV 610 (968)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 356666775 6889999999999999999999999999999999999999999999999999999883
No 3
>KOG3681|consensus
Probab=94.40 E-value=0.068 Score=47.75 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=72.1
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHH------------------------HHHHHhhCCC--CHHHHHHHHHHHHHHHHH
Q psy10581 2 AGTETLQVATYHAEYHLKIYAPQLVT------------------------AARTLADHPS--SKIAKENLEVFADMWQAL 55 (90)
Q Consensus 2 s~tE~L~vta~~ae~~l~~l~PQVi~------------------------Aar~L~~~P~--Sk~A~En~d~f~~~W~~~ 55 (90)
+..+.|.++..|+...++.-.-++.+ ++......|. .+.++++.+.|++.|..+
T Consensus 490 ~~~dfl~vSE~hi~ed~~kc~~ai~~~~~~~l~~~a~~i~~ra~rv~~v~~aE~dn~e~~~yte~v~~a~~~l~~~v~~~ 569 (835)
T KOG3681|consen 490 DIDDFLAVSEEHILEDVNKCGVAIQSIDPQMLDRTAGAIRGRANRVLHVVKAEMDNYEPPVYTERVKEAVDVLSETVMPQ 569 (835)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhhhhhhhhHHHHHHHHHHhccCCchhhHHHHHHHHHHHhccchh
Confidence 45678999999999888776666555 5556666677 899999999999999999
Q ss_pred HHHHHHHHHHHHh--cccCCCCceeeeCCCCCCC
Q psy10581 56 VSDITTLCKEIMD--KERIPDKHTYMSLPRPGIC 87 (90)
Q Consensus 56 v~~Lt~lvdei~d--~g~~~~k~~y~slprp~kh 87 (90)
|.+...+.-++.| .++..++..|+..+|+-.-
T Consensus 570 ~~d~~~~a~e~~d~~~~~~~~~n~~i~a~~~V~d 603 (835)
T KOG3681|consen 570 FGDAVSVAVEILDPDKAFRGEENRFLDASRLVYD 603 (835)
T ss_pred HHHHHHHHHHhcCchhcccchhhHHhhhhHHHHh
Confidence 9999999999999 6678899999999887543
No 4
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=76.40 E-value=6.6 Score=34.10 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=44.2
Q ss_pred HHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10581 17 HLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDK 69 (90)
Q Consensus 17 ~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~ 69 (90)
.||+|.+-+|-|=. | |.|+-+.-|.+-+-+.|...+..++.++.+|+|+
T Consensus 324 SlEsLDt~LIPalq-l---~~s~~~~~hs~iLe~Hf~eE~~~fr~~I~eIIDS 372 (552)
T PF05482_consen 324 SLESLDTCLIPALQ-L---PDSKSSDHHSEILEQHFNEEMNKFRNAIHEIIDS 372 (552)
T ss_pred HHHHHHHHHHHHHH-h---hccccchhhHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 47888888888766 3 8999999999999999999999999999999994
No 5
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=67.15 E-value=19 Score=32.61 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhC---C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 12 YHAEYHLKIYAPQLVTAARTLADH---P--SSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 12 ~~ae~~l~~l~PQVi~Aar~L~~~---P--~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
..|-..|+...|-++++.++.+.| | ++.-|++|-|-.. ..|+.++++|+.
T Consensus 190 ~~a~~~Lk~~~p~L~ts~k~~l~h~~~p~~~~~~a~~nRd~v~-------~~m~~al~~Ii~ 244 (968)
T PF01044_consen 190 AAARAVLKKCSPMLLTSSKTYLRHPNDPGKEVEEARENRDYVF-------KQMRDALNEIIR 244 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTSSTHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence 345568999999999999999999 8 7889999999666 455666666665
No 6
>COG1728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.94 E-value=34 Score=25.25 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceeeeC-CCCCCCC
Q psy10581 10 ATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDKERIPDKHTYMSL-PRPGICG 88 (90)
Q Consensus 10 ta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g~~~~k~~y~sl-prp~kh~ 88 (90)
+-+|.+..|..+--+|..-|..|..-|+ .||+-.|| +.+.+.|..|++.+=.-+++.-|-| ||...|+
T Consensus 41 ~~~~~~~~L~~l~d~I~~~G~rL~~trt----~~~l~~YK-------~lIkEFv~~ai~~~y~le~~~sfn~~g~t~~~~ 109 (151)
T COG1728 41 SDKHHEDRLKYLQDRICDTGNRLSNTRT----LENLKAYK-------NLIKEFVKYAIKSGYSLEESKSFNLDGRTRIFT 109 (151)
T ss_pred hcHHHHHHHHHHHHHHHHHhhHhhcCCC----HHHHHHHH-------HHHHHHHHHHHHhccccccccccccCCCceeee
Confidence 4467899999999999999999997765 68999999 6788889999996666666666666 7777665
Q ss_pred C
Q psy10581 89 K 89 (90)
Q Consensus 89 ~ 89 (90)
.
T Consensus 110 i 110 (151)
T COG1728 110 I 110 (151)
T ss_pred h
Confidence 3
No 7
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=62.87 E-value=42 Score=25.01 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 14 AEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKE 65 (90)
Q Consensus 14 ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvde 65 (90)
|....+...|++.. ..|=-++=.-|++.||.+|+..++-.+.+-+.
T Consensus 48 A~~~Wrrvvp~L~e------~~ll~~~D~~~Le~YC~~ysiY~~av~~lkk~ 93 (160)
T COG3747 48 AKKEWRRVVPFLEE------LKLLKPADLTLLELYCVAYSIYRNAVAHLKKH 93 (160)
T ss_pred HHHHHHHHHHHHHH------hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44567777777653 34555666889999999999999999888877
No 8
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=59.79 E-value=5.8 Score=34.14 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHh---------cccCCCCceeeeCCCCCCCCCC
Q psy10581 40 IAKENLEVFADMWQALVSDITTLCK-----------EIMD---------KERIPDKHTYMSLPRPGICGKL 90 (90)
Q Consensus 40 ~A~En~d~f~~~W~~~v~~Lt~lvd-----------ei~d---------~g~~~~k~~y~slprp~kh~~~ 90 (90)
+..||.+.|++........+..... ..|| .=|..++.. |=|||-||||
T Consensus 207 VS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~L---lFRPgGHGAL 274 (513)
T PF14134_consen 207 VSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPSTDTIAVDPDNTPFRNEDGSL---LFRPGGHGAL 274 (513)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCCCCeeEECCCCCccCCCCCCE---EeCCCcchHH
Confidence 4589999999998888877776321 1122 333344443 3499999986
No 9
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=53.49 E-value=38 Score=24.65 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 24 QLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 24 QVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
-+||.++++...|.-+.+..++|.........+..+..-+....+
T Consensus 28 a~vn~~~i~~~~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~ 72 (170)
T COG2825 28 AIVNLGRIFQESPQAKKVSADLESEFKKRQKELQKMQKELKAKEA 72 (170)
T ss_pred eeecHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999998888877766665
No 10
>smart00150 SPEC Spectrin repeats.
Probab=50.87 E-value=51 Score=19.49 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhHHHH---HHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 12 YHAEYHLKIYAPQLV---TAARTLA--DHPSSKIAKENLEVFADMWQALVSDIT 60 (90)
Q Consensus 12 ~~ae~~l~~l~PQVi---~Aar~L~--~~P~Sk~A~En~d~f~~~W~~~v~~Lt 60 (90)
+.-...+....|+|- ..|.-|. .+|.+...++.++.+...|......+.
T Consensus 41 ~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 94 (101)
T smart00150 41 EALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAE 94 (101)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555433 3333333 257777889999999999987665543
No 11
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=46.29 E-value=57 Score=19.27 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhHH---HHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 12 YHAEYHLKIYAPQ---LVTAARTLAD--HPSSKIAKENLEVFADMWQALVSDITT 61 (90)
Q Consensus 12 ~~ae~~l~~l~PQ---Vi~Aar~L~~--~P~Sk~A~En~d~f~~~W~~~v~~Lt~ 61 (90)
+..+..+....++ |...|..|.. .+.+...++-++.+...|......+..
T Consensus 44 ~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 44 KELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443 3344555533 368889999999999999877666544
No 12
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=45.99 E-value=53 Score=23.93 Aligned_cols=56 Identities=29% Similarity=0.344 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 5 ETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEI 66 (90)
Q Consensus 5 E~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei 66 (90)
|.|-+.++. +-.-+-|++-|.|.-+ +|+|+ ..+.++.--..=......|-..+..+
T Consensus 41 E~LIvaa~e----VAasTAQLv~AsrVKa-~~~S~-~~~~L~~As~~V~~At~~LV~av~~~ 96 (152)
T PF01608_consen 41 EELIVAAKE----VAASTAQLVAASRVKA-DPNSK-TQDRLEQASKAVKKATENLVAAVKAA 96 (152)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHCTTS--TTSC-CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 8899999999999877 77886 45555544433333333333333333
No 13
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=44.20 E-value=47 Score=24.01 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIM 67 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~ 67 (90)
-+||+.+|-+--+..|+.|-.+|.|.-
T Consensus 92 LkenLhvflEkLE~EvreLEQlV~DLE 118 (135)
T PF15466_consen 92 LKENLHVFLEKLEKEVRELEQLVRDLE 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998864
No 14
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=40.34 E-value=31 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCC
Q psy10581 11 TYHAEYHLKIYAPQLVTAARTLADHPS 37 (90)
Q Consensus 11 a~~ae~~l~~l~PQVi~Aar~L~~~P~ 37 (90)
+......++.|||--|..|++|+.+|+
T Consensus 50 ~~~l~~~l~~lGp~fiKlGQ~lS~r~d 76 (437)
T TIGR01982 50 GERLRLALEELGPTFIKFGQTLSTRAD 76 (437)
T ss_pred HHHHHHHHHHcCchhHHHhHHHHhCcc
Confidence 556677899999999999999999984
No 15
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=39.39 E-value=61 Score=27.90 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCc-----ee------eeCCCC
Q psy10581 43 ENLEVFADMWQALVSDITTLCKEIMD--KERIPDKH-----TY------MSLPRP 84 (90)
Q Consensus 43 En~d~f~~~W~~~v~~Lt~lvdei~d--~g~~~~k~-----~y------~slprp 84 (90)
+=-+.+++.|...|..|...+..|.+ +.|+.+|. +| .+|||-
T Consensus 321 ~ia~~s~~~Yr~~V~~la~~in~ia~~iP~rR~RklhiGlfgYsR~~~~~~lPRA 375 (506)
T TIGR02751 321 EIIEIYAKRYQKIIEKLAPTINRIASYIPKRRDRKLHVGLFGYSRSVGGVSLPRA 375 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccCcccccCCCCCCCCch
Confidence 34467888999999999999999999 77766665 33 478884
No 16
>PTZ00328 eukaryotic initiation factor 5a; Provisional
Probab=37.67 E-value=17 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.3
Q ss_pred CCCceeeeCCCCCCCCC
Q psy10581 73 PDKHTYMSLPRPGICGK 89 (90)
Q Consensus 73 ~~k~~y~slprp~kh~~ 89 (90)
+=|=+-||.+.|||||.
T Consensus 40 PCKIveistSKtGKHGh 56 (166)
T PTZ00328 40 PCKVIDLSVSKTGKHGH 56 (166)
T ss_pred eeEEEEEecCCCCcCCc
Confidence 55667899999999994
No 17
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=37.48 E-value=36 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcccCCCCceeeeCCC
Q psy10581 57 SDITTLCKEIMDKERIPDKHTYMSLPR 83 (90)
Q Consensus 57 ~~Lt~lvdei~d~g~~~~k~~y~slpr 83 (90)
.++...++.+....+.+.+-+|++|||
T Consensus 136 ~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 136 ENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 455666666666333233589999998
No 18
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=36.48 E-value=1.4e+02 Score=20.96 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 11 TYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITT 61 (90)
Q Consensus 11 a~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~ 61 (90)
....+..|+.|=-+|-.+|.-|+..|+ .+|+..||+.=.+-++....
T Consensus 38 ~~~~~e~L~~Ll~~I~~~G~~L~~~~t----~~~l~~YK~~Vk~Fl~~~v~ 84 (147)
T PF03885_consen 38 EEKSEEELQELLDEIDEQGERLAESPT----LENLKRYKELVKQFLKEVVK 84 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHHHHHHHH
Confidence 345568899999999999999999985 79999999665554444333
No 19
>PF13498 DUF4122: Domain of unknown function (DUF4122)
Probab=36.22 E-value=1.2e+02 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy10581 24 QLVTAARTLADHPSSKIAK-ENLEVFADMWQALVSDITTLCKEIMD-KER 71 (90)
Q Consensus 24 QVi~Aar~L~~~P~Sk~A~-En~d~f~~~W~~~v~~Lt~lvdei~d-~g~ 71 (90)
+.+.||+||.. +.+ +=|+.|-++-+++ ..+-+|+++-.| .|+
T Consensus 158 Ks~rAA~TL~~-----ir~T~lf~~f~sqveN~-~~V~~Ll~~~LDe~Gn 201 (220)
T PF13498_consen 158 KSIRAARTLHK-----IRDTDLFDFFTSQVENK-KKVEELLGEYLDENGN 201 (220)
T ss_pred HHHHHHHHHHH-----HhhhhHHHHHHHhhccH-HHHHHHHHHhcCccCC
Confidence 67888888873 222 3467777766655 566778888888 776
No 20
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=36.01 E-value=69 Score=23.25 Aligned_cols=27 Identities=4% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 42 KENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 42 ~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
-|+||.=+..|+.++.+|..=+.+.-.
T Consensus 22 Ldrfd~ER~eWE~Q~kemq~kieql~~ 48 (141)
T PF14818_consen 22 LDRFDRERQEWEQQWKEMQRKIEQLQK 48 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999888877766
No 21
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=32.99 E-value=66 Score=21.85 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-CCCCceeeeCC
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIMDK-ER-IPDKHTYMSLP 82 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~d~-g~-~~~k~~y~slp 82 (90)
--+||+.|-+.=+..+..|...++++-.. .+ ..+.-.|++=|
T Consensus 16 l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nP 59 (134)
T PF08336_consen 16 LISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNP 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcH
Confidence 35789999999999999999999999872 11 34566777765
No 22
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=32.02 E-value=2.3e+02 Score=21.52 Aligned_cols=59 Identities=25% Similarity=0.257 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 4 TETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 4 tE~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
.|.|-+.++. |-.-+-|+|.|.|..+ +++|+ .++++..=...=.+....|-..++.+..
T Consensus 87 ~E~LI~aAk~----VAasTaQLVaAsrvka-~~~S~-~~~~L~~Ask~V~~At~~LVaaak~~~~ 145 (200)
T smart00307 87 EEELIVAAKE----VAASTAQLVAASRVKA-DKDSQ-AQDRLQAASKAVTNATANLVAAVKSGMI 145 (200)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhcc-CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776666 8888999999999666 67776 6777777666666666666666665543
No 23
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=30.38 E-value=1.9e+02 Score=20.88 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhcccCCCCceeeeC
Q psy10581 21 YAPQLVTAARTLADHPSSKIAKENLEVFADMWQAL-----------------VSDITTLCKEIMDKERIPDKHTYMSL 81 (90)
Q Consensus 21 l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~-----------------v~~Lt~lvdei~d~g~~~~k~~y~sl 81 (90)
+|=|++.-|+.| +|+|.-+++ |...|..+ ...|..+.|.++.- ...|..||.+
T Consensus 19 ~g~~L~~~a~~l--wP~~~~~~~----~s~~Wqq~l~~~a~~~~~l~gW~q~~~~Lq~L~~rL~~l--e~~rg~Y~Ti 88 (148)
T PF12486_consen 19 YGEQLVRQAQQL--WPDNPQQQQ----LSQQWQQQLEARALPAPQLDGWHQGMTQLQQLADRLNQL--EEQRGKYMTI 88 (148)
T ss_pred HHHHHHHHHHHH--CCCCHHHHH----HHHHHHHHHHHhCCCchhhchHHHHHHHHHHHHHHHHHH--HHhcCCceeH
Confidence 334555555444 698866553 45555554 44566666666652 2334567754
No 24
>KOG2296|consensus
Probab=30.01 E-value=1.5e+02 Score=26.55 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceeeeCCCCCC
Q psy10581 40 IAKENLEVFADMWQALVSDITTLCKEIMDKERIPDKHTYMSLPRPGI 86 (90)
Q Consensus 40 ~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g~~~~k~~y~slprp~k 86 (90)
+|..-....+-+|..+|..-..+-|....- +.+..|-|++.+||-|
T Consensus 300 ~a~qt~~~~~a~w~~~V~~~l~le~~~~~~-~Sas~~~~~~~~r~~~ 345 (673)
T KOG2296|consen 300 NALQTLYRYKAEWLVYVTEALVLEDTAKNY-RSASGRKYLESSRATK 345 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCceeeccccccc
Confidence 455666777889999998877666666554 5678889999999863
No 25
>COG1647 Esterase/lipase [General function prediction only]
Probab=29.91 E-value=79 Score=24.98 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 35 HPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 35 ~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
.++...+++-|..|+++|..++..+..+++++.+
T Consensus 142 ~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 175 (243)
T COG1647 142 GKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARR 175 (243)
T ss_pred CCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999999988875
No 26
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
Probab=29.52 E-value=28 Score=25.33 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=9.1
Q ss_pred eeCCCCCCCCC
Q psy10581 79 MSLPRPGICGK 89 (90)
Q Consensus 79 ~slprp~kh~~ 89 (90)
++..+|||||.
T Consensus 44 ~~~~KpGKHG~ 54 (159)
T PLN03107 44 VSTSKTGKHGH 54 (159)
T ss_pred EEecCCCCCCc
Confidence 47789999984
No 27
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=29.37 E-value=2.7e+02 Score=21.72 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHH
Q psy10581 23 PQLVTAARTLADHPSSKIAKENLEV 47 (90)
Q Consensus 23 PQVi~Aar~L~~~P~Sk~A~En~d~ 47 (90)
=...+|-..|+.+|+|..+++.+=.
T Consensus 110 ~~ff~a~~~ls~~P~~~~~r~~vl~ 134 (322)
T TIGR02492 110 NNFFNALQELAKNPDSEALRQAVLE 134 (322)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3677888889999999988876533
No 28
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=28.87 E-value=1.3e+02 Score=26.00 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCc
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIMD--KERIPDKH 76 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~d--~g~~~~k~ 76 (90)
+.+=.+.|...|..++..|...+.++.+ +.|+.+|.
T Consensus 317 ~~~ii~~~s~~Y~~~i~~la~~In~va~~vP~rR~Rkl 354 (491)
T PF14010_consen 317 LLEIIEKYSAEYRSQIEKLAPTINRVARYVPKRRDRKL 354 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---S-B--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHh
Confidence 4456788999999999999999999999 77777766
No 29
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=28.71 E-value=97 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 42 KENLEVFADMWQALVSDITTLCKE 65 (90)
Q Consensus 42 ~En~d~f~~~W~~~v~~Lt~lvde 65 (90)
+|+-+.||+.|.++...|++....
T Consensus 85 ~eka~~~~~~w~~~~~~L~~~~~~ 108 (180)
T cd04755 85 EEKASYFSEQWKQHYSTLSRSAVG 108 (180)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 788899999999999999886643
No 30
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=27.44 E-value=1.3e+02 Score=17.91 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy10581 22 APQLVTAARTLADHPSSKIAKENLEVFADMWQ 53 (90)
Q Consensus 22 ~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~ 53 (90)
.-++|.-++.|...++-+.+-+-|..+.+.|.
T Consensus 36 K~~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk 67 (77)
T PF03993_consen 36 KEALIEEAEALAESEDWKEAAEEIKELQQEWK 67 (77)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 34778888888887764444455555555553
No 31
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=27.17 E-value=2e+02 Score=19.42 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCceeeeCCC
Q psy10581 39 KIAKENLEVFADMWQALVSDITTLCKEIMD--KERIPDKHTYMSLPR 83 (90)
Q Consensus 39 k~A~En~d~f~~~W~~~v~~Lt~lvdei~d--~g~~~~k~~y~slpr 83 (90)
+..++|...|-..-..--..|++-++-..+ .++.-++-.|.+||-
T Consensus 44 ~~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e~~~~~~~~~s~~~~l~v 90 (117)
T PF10280_consen 44 EAFESATSEFFSTLSSVEVELRRQIKYLEEVSIIQPHEGSSYGALDV 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTT--------TBS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccch
Confidence 344445555555555444556666666666 556678889998884
No 32
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=25.98 E-value=1.2e+02 Score=21.77 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 40 IAKENLEVFADMWQALVSDITTLCKEIM 67 (90)
Q Consensus 40 ~A~En~d~f~~~W~~~v~~Lt~lvdei~ 67 (90)
..+|+.+.|++.|.++-..|+..+.+.+
T Consensus 74 lp~e~~~~l~~~~~~~~~~l~~~l~~~~ 101 (174)
T cd04752 74 LPKEHATSLCRSYEEKQSKLQESLRANS 101 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3479999999999999999998877654
No 33
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=25.93 E-value=1.2e+02 Score=19.57 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=33.1
Q ss_pred hHHHHHHHH----HHhhCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy10581 22 APQLVTAAR----TLADHPSSKIAKENLEVFADMWQALVSDIT---TLCKEIM 67 (90)
Q Consensus 22 ~PQVi~Aar----~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt---~lvdei~ 67 (90)
||..-+... ....|-.-.+-.++||.|.+.|.+.+.++- ...+++.
T Consensus 55 Gp~~Y~~~~G~p~m~~~H~~l~it~~~f~~~~~~~~~al~~~~v~~~~~~~~~ 107 (120)
T PF01152_consen 55 GPPLYTGRDGHPMMREAHAHLGITEEHFDRWLELLKQALDELGVPEELIDELL 107 (120)
T ss_dssp SSSHHHHHHSSH-HHHHHTTS-BBHHHHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred CCCCCcccCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 477776555 666777778999999999999999888773 4444443
No 34
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=25.33 E-value=59 Score=23.50 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHhhCCC
Q psy10581 21 YAPQLVTAARTLADHPS 37 (90)
Q Consensus 21 l~PQVi~Aar~L~~~P~ 37 (90)
+--||+.|||-|+..|+
T Consensus 117 lQ~qI~eAArrLa~e~~ 133 (138)
T PF11819_consen 117 LQQQIVEAARRLANEPN 133 (138)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 45799999999999885
No 35
>KOG0412|consensus
Probab=25.26 E-value=2e+02 Score=26.26 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceeeeC-C
Q psy10581 4 TETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDKERIPDKHTYMSL-P 82 (90)
Q Consensus 4 tE~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g~~~~k~~y~sl-p 82 (90)
+|-.+..|.|.- .+..+.||+|...-.-...|.|.+ .++++.++++=+..-..+.+-..++++++.-++=.-|+-+ |
T Consensus 143 seDyE~AA~~Ih-RflslD~~~i~~~~~~~~~~ts~i-~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFP 220 (773)
T KOG0412|consen 143 SEDYEKAATHIH-RFLSLDQALIESRFAKQVVPTSEI-SDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFP 220 (773)
T ss_pred hhhHHHHHHHHH-HHHhcCHHHHhhhhhhccCCchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcc
Confidence 344556666643 466779999999888888999999 9999999988777766677777777776654444434332 4
Q ss_pred CCCCC
Q psy10581 83 RPGIC 87 (90)
Q Consensus 83 rp~kh 87 (90)
--|+|
T Consensus 221 liG~~ 225 (773)
T KOG0412|consen 221 LIGEE 225 (773)
T ss_pred ccCCc
Confidence 44444
No 36
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=24.95 E-value=84 Score=26.83 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCC
Q psy10581 11 TYHAEYHLKIYAPQLVTAARTLADHPS 37 (90)
Q Consensus 11 a~~ae~~l~~l~PQVi~Aar~L~~~P~ 37 (90)
+......++.|||--|.-|++|+.+|+
T Consensus 52 ~~rlr~aLe~LGp~fIKlGQ~LStR~D 78 (537)
T PRK04750 52 GERLRLALEELGPIFVKFGQMLSTRRD 78 (537)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHcCcc
Confidence 445566799999999999999999985
No 37
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=24.11 E-value=56 Score=26.55 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10581 37 SSKIAKENLEVFADMWQA 54 (90)
Q Consensus 37 ~Sk~A~En~d~f~~~W~~ 54 (90)
+...|.++++.|+..|+.
T Consensus 291 de~~A~~l~~~fk~aW~~ 308 (309)
T PF12754_consen 291 DESPASELVGLFKMAWSS 308 (309)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhhhhhhhc
Confidence 778999999999999974
No 38
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=24.10 E-value=61 Score=19.63 Aligned_cols=15 Identities=27% Similarity=0.528 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy10581 39 KIAKENLEVFADMWQ 53 (90)
Q Consensus 39 k~A~En~d~f~~~W~ 53 (90)
..+.+|.+.+++.|+
T Consensus 52 ~~i~~~~~~l~~~W~ 66 (66)
T PF13711_consen 52 EWIEENQEELLEEWN 66 (66)
T ss_pred HHHHHHHHHHHHhhC
Confidence 467899999999994
No 39
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=23.88 E-value=2.2e+02 Score=18.77 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy10581 13 HAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALV 56 (90)
Q Consensus 13 ~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v 56 (90)
.|....+.+.|++...+. -+.+=...|+.||+.|....
T Consensus 9 ~ak~~w~ri~~~L~~~~~------l~~~D~~~l~~yc~a~~~~~ 46 (116)
T TIGR01558 9 EGKDEWKRVAPELKGSGI------LTNLDRDALLRYCEAYDRYR 46 (116)
T ss_pred HHHHHHHHHHHHHHHcCC------chHHHHHHHHHHHHHHHHHH
Confidence 455667788887765433 23344788999999998744
No 40
>KOG2520|consensus
Probab=23.38 E-value=81 Score=28.80 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy10581 26 VTAARTLADHPSSKIAKENLEVFADMWQ 53 (90)
Q Consensus 26 i~Aar~L~~~P~Sk~A~En~d~f~~~W~ 53 (90)
|+|=.+|+.+|.. |||..|+++|+
T Consensus 571 V~AlEil~Efp~~----~~l~~f~~w~~ 594 (815)
T KOG2520|consen 571 VSALEILAEFPGD----ENLLKFKKWVQ 594 (815)
T ss_pred hHHHHHHHHcCCc----chhHHHHHHHH
Confidence 6788899999988 99999999998
No 41
>cd01119 Chemokine_CC_DCCL Chemokine_CC_DCCL: subgroup of the Chemokine_CC subgroup based on the presence of a DCCL motif involving the two N-terminal cysteine residues; includes a number of small inducible cytokines capable of reversibly inhibiting normal hematopoietic progenitor proliferation by blocking progression through the cell cycle; DCCL subgroup contains Exodus-1 (also known as CCL20, MIP-3alpha, LARC, ST38 (mouse)), Exodus-2 (also known as CCL21, SLC, 6-Ckine, TCA4, CKbeta9), and Exodus-3 (also known as CCL-19, ELC, MIP-3beta, CKbeta11). Exodus-3 was shown to inhibit the growth of human breast cancer cells in vivo in a mouse model; Exodus-1, -2, and -3 were all shown to significantly inhibit chronic myelogenous leukemia progenitor cell proliferation; Exodus-2 and -3 show potent immunotherapeutic activity toward solid tumors; chemotatic for T cells, B cells, dendritic cells, macrophage progenitor cells, and NK cells; exist as monomers and dimers, but are believed to be funct
Probab=22.90 E-value=24 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q psy10581 28 AARTLADHPSSKIAKENLEVF 48 (90)
Q Consensus 28 Aar~L~~~P~Sk~A~En~d~f 48 (90)
.|+.++++|+++-+++.|..+
T Consensus 40 ~g~~iC~dP~~~WVq~~~~~l 60 (61)
T cd01119 40 RGRKVCADPKQDWVKRAIQLL 60 (61)
T ss_pred CCCEEeCCCChHHHHHHHHhc
Confidence 578899999999999887653
No 42
>KOG4545|consensus
Probab=22.86 E-value=2.1e+02 Score=21.89 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--eeeeC
Q psy10581 42 KENLEVFADMWQALVSDITTLCKEIMDKERIPDKH--TYMSL 81 (90)
Q Consensus 42 ~En~d~f~~~W~~~v~~Lt~lvdei~d~g~~~~k~--~y~sl 81 (90)
.|-|..+-+.|...+++-++.|.++..+.++.-|+ +|.++
T Consensus 24 pe~fkr~g~~~~~l~Rdy~e~c~d~~~e~~~rP~kA~vy~~g 65 (197)
T KOG4545|consen 24 PERFKRWGQYWNGLVRDYTEVCVDVVRESYTRPKKALVYGTG 65 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCcceEEEEcc
Confidence 46677777889999999999999999877644444 56553
No 43
>PF15543 Toxin_65: Putative toxin 65
Probab=22.61 E-value=4.9 Score=28.79 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=37.8
Q ss_pred HhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 18 LKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 18 l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
++.-.-||+.+|.+|+..---+.-+..+=++.+.|+++++..|.+--.++|
T Consensus 46 l~~PDrqIVQ~GH~~S~wyvk~m~~~d~~MLe~~~~N~~~~~T~~~GsV~~ 96 (135)
T PF15543_consen 46 LSDPDRQIVQAGHMLSDWYVKAMSRRDHLMLEDADLNWMSGFTEASGSVTS 96 (135)
T ss_pred hhCccHHHHHhhhhhhhhHHHhhCccceEEeccchhhhhcCcceecceecc
Confidence 334445899999999874444566677778999999999999866555555
No 44
>KOG1959|consensus
Probab=22.16 E-value=95 Score=29.00 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=37.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy10581 30 RTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDKER 71 (90)
Q Consensus 30 r~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g~ 71 (90)
--|+.+|+-+-..=-+.=|..+|..+-......|+....+||
T Consensus 80 ~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~Gr 121 (996)
T KOG1959|consen 80 EELLKDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGR 121 (996)
T ss_pred HHHhcCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 347889999888888899999999999999999999999887
No 45
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.07 E-value=1.6e+02 Score=17.87 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10581 48 FADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 48 f~~~W~~~v~~Lt~lvdei~d 68 (90)
|-+.|.+.+..+...++.|..
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~ 21 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKE 21 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776665
No 46
>smart00199 SCY Intercrine alpha family (small cytokine C-X-C) (chemokine CXC). Family of cytokines involved in cell-specific chemotaxis, mediation of cell growth, and the inflammatory response.
Probab=21.69 E-value=24 Score=20.99 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCHHHHHHHHH
Q psy10581 28 AARTLADHPSSKIAKENLEV 47 (90)
Q Consensus 28 Aar~L~~~P~Sk~A~En~d~ 47 (90)
.|+-++.+|+++-+++-|+.
T Consensus 39 ~g~~~C~dP~~~WVk~~~~~ 58 (59)
T smart00199 39 KGRKVCADPKAKWVQRYIKK 58 (59)
T ss_pred CCCEEecCCChHHHHHHHHh
Confidence 56778999999988887764
No 47
>PF09375 Peptidase_M75: Imelysin; InterPro: IPR018976 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The imelysin peptidase was first identified in Pseudomonas aeruginosa. The active site residues have not been identified. However, His201 and Glu204 are completely conserved in the family and occur in an HXXE motif that is also found in family M14. ; PDB: 4ECG_A 3OYV_A 3N8U_A 3AT7_A 3PF0_A.
Probab=21.43 E-value=2.3e+02 Score=21.24 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy10581 22 APQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDI 59 (90)
Q Consensus 22 ~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~L 59 (90)
+-++..|.+.+|..|+ .+|++..++.|......-
T Consensus 12 ~~~L~~a~~~~~~~p~----~~~L~~ar~aw~~a~~~w 45 (288)
T PF09375_consen 12 AQALQTAVQAFCAAPS----AANLAAARAAWRQARLAW 45 (288)
T ss_dssp HHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHH
Confidence 6678889999998885 499999999998876543
No 48
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=21.21 E-value=50 Score=23.03 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=8.7
Q ss_pred eeCCCCCCCCC
Q psy10581 79 MSLPRPGICGK 89 (90)
Q Consensus 79 ~slprp~kh~~ 89 (90)
++...|||||.
T Consensus 30 ~~~~kpGkhG~ 40 (130)
T TIGR00037 30 ISTSKPGKHGH 40 (130)
T ss_pred EEecCCCCCCc
Confidence 46689999984
No 49
>PHA00360 II replication initiation protein
Probab=21.19 E-value=66 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIM 67 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~ 67 (90)
..||.+.||+.|...++++.++++.++
T Consensus 274 ~~~~~~~~~~Lw~~a~~d~~~a~eg~~ 300 (421)
T PHA00360 274 ESGGFDLICDLWKFSFKDLFDAFEGDD 300 (421)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcccc
Confidence 357899999999999999999887554
No 50
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=20.75 E-value=1.6e+02 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 40 IAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 40 ~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
..+-=++.|.+.|+.+-.++.++.+++++
T Consensus 27 ~~~~R~~~y~~~W~~~~~~Iq~il~~~n~ 55 (330)
T PF07034_consen 27 AVQLRYEAYQKLWSKIESRIQEILRELNS 55 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667899999999999999888877764
No 51
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.75 E-value=1.9e+02 Score=16.80 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
-+.++|.++..|......-..+-.++..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887777777665
No 52
>COG5621 Predicted secreted hydrolase [General function prediction only]
Probab=20.37 E-value=30 Score=28.59 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=12.5
Q ss_pred eeeeCCCCCCCCCC
Q psy10581 77 TYMSLPRPGICGKL 90 (90)
Q Consensus 77 ~y~slprp~kh~~~ 90 (90)
-|.||||.+.|||+
T Consensus 196 yyyslp~~~v~Gtv 209 (354)
T COG5621 196 YYYSLPRYEVSGTV 209 (354)
T ss_pred eeeeeeeeeeeeeE
Confidence 58999999999984
No 53
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=52 Score=24.27 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCceeeeCCCCCCCC
Q psy10581 49 ADMWQALVSDITTLCKEIMDKERIPDKHTYMSLPRPGICG 88 (90)
Q Consensus 49 ~~~W~~~v~~Lt~lvdei~d~g~~~~k~~y~slprp~kh~ 88 (90)
+++|-..++.|+..+.+.-|.| .-+|++|=-|=+-.|-|
T Consensus 92 K~~Wi~~IRalR~~Lr~lrd~g-kIdk~~YR~lY~~aKGg 130 (150)
T COG2147 92 KERWIKRIRALRRELRKLRDDG-KIDKHTYRKLYRMAKGG 130 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CcCHHHHHHHHHHHcCC
Confidence 7899999999999999999999 57888876555444444
No 54
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=20.28 E-value=70 Score=18.41 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy10581 43 ENLEVFADMWQAL 55 (90)
Q Consensus 43 En~d~f~~~W~~~ 55 (90)
+.|+.|++.|+..
T Consensus 33 ~~~~~fd~aw~~Y 45 (46)
T PF06855_consen 33 ESMEIFDRAWSLY 45 (46)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5799999999864
Done!