Query psy10581
Match_columns 90
No_of_seqs 89 out of 91
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:05:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6g_A Alpha-1 catenin; adhesi 99.8 1.8E-20 6.3E-25 140.9 9.8 69 1-69 64-132 (256)
2 4igg_A Catenin alpha-1; asymme 99.8 9.9E-20 3.4E-24 155.8 9.1 69 1-69 359-427 (832)
3 1tr2_A Vinculin isoform 1; act 99.2 2.7E-11 9.2E-16 105.0 7.1 62 7-68 657-718 (1066)
4 1dow_A Alpha-catenin; four-hel 93.7 0.32 1.1E-05 35.6 7.7 49 13-68 153-201 (205)
5 2l7a_A Talin-1; vinculin, bund 90.6 1.4 4.7E-05 30.4 7.5 49 13-68 78-126 (131)
6 3rf3_A Vinculin, metavinculin; 89.4 1.1 3.9E-05 33.5 6.7 49 13-68 193-246 (258)
7 2x0c_A Talin-1; cytoskeleton, 89.1 2.6 8.8E-05 32.4 8.7 53 14-66 252-304 (309)
8 1h6g_A Alpha-1 catenin; adhesi 86.7 2 6.7E-05 31.7 6.5 51 13-63 198-253 (256)
9 4igg_A Catenin alpha-1; asymme 79.0 6.7 0.00023 33.9 7.5 48 14-68 129-176 (832)
10 2l10_A Talin-1; helical bundle 72.5 19 0.00064 25.3 7.3 39 23-61 114-152 (158)
11 1tr2_A Vinculin isoform 1; act 71.7 6.1 0.00021 34.5 5.5 58 8-65 780-837 (1066)
12 2x0c_A Talin-1; cytoskeleton, 68.0 30 0.001 26.4 8.2 47 22-68 152-198 (309)
13 1oeg_A Apolipoprotein E; siali 63.3 3.5 0.00012 21.4 1.5 20 44-63 2-21 (26)
14 2qup_A BH1478 protein; structu 49.6 33 0.0011 23.3 5.0 43 10-56 35-77 (145)
15 3rf3_A Vinculin, metavinculin; 47.0 84 0.0029 23.2 9.7 60 7-66 70-129 (258)
16 1u89_A Talin 1, talin; 4-helix 44.0 21 0.00072 24.7 3.3 23 17-39 112-134 (139)
17 1bm9_A RTP, TER, replication t 42.5 35 0.0012 23.0 4.2 26 41-66 96-121 (122)
18 4i0x_B ESAT-6-like protein MAB 36.9 59 0.002 19.9 4.4 30 39-68 52-81 (103)
19 3pe0_A Plectin; cytoskeleton, 36.8 57 0.0019 23.9 4.9 35 23-57 65-101 (283)
20 3jrt_A Integron cassette prote 34.2 5.9 0.0002 28.8 -0.8 36 48-83 24-62 (192)
21 2yfv_C SCM3, KLLA0F05115P; cel 33.8 34 0.0012 21.0 2.7 26 42-68 28-53 (63)
22 3fav_A ESAT-6-like protein ESX 32.7 81 0.0028 18.9 4.6 31 38-68 45-75 (101)
23 3v42_A Folliculin; tumor suppr 32.6 58 0.002 23.9 4.3 42 21-62 138-181 (226)
24 2iak_A Bullous pemphigoid anti 30.8 87 0.003 21.4 4.8 35 25-59 179-215 (224)
25 4f7g_B Talin-1; alpha-helix bu 30.5 1.6E+02 0.0054 21.5 9.3 52 17-68 136-188 (216)
26 3fav_B ESAT-6, 6 kDa early sec 30.5 61 0.0021 19.0 3.5 28 41-68 46-73 (94)
27 3oyv_A Imelysin; outer membran 29.0 1.2E+02 0.0041 23.4 5.8 32 22-57 249-280 (361)
28 1dow_A Alpha-catenin; four-hel 25.6 1.9E+02 0.0064 20.7 8.3 56 11-66 34-89 (205)
29 2kav_A Sodium channel protein 24.9 42 0.0014 22.7 2.2 33 37-69 34-75 (129)
30 3pf0_A Imelysin-like protein; 24.8 1E+02 0.0035 23.6 4.7 38 19-58 71-108 (364)
31 3h6p_C ESAT-6-like protein ESX 23.5 50 0.0017 19.7 2.2 29 41-69 47-75 (96)
32 2ibl_A Fibritin; foldon, trime 23.1 1.9E+02 0.0064 19.9 5.9 40 41-80 62-108 (130)
33 2g0u_A Type III secretion syst 23.1 1.6E+02 0.0054 19.0 5.8 57 15-71 26-82 (92)
34 4i0x_A ESAT-6-like protein MAB 21.3 1.4E+02 0.0048 17.8 4.6 42 26-68 27-68 (94)
35 3pdy_A Plectin; cytoskeleton, 21.2 2E+02 0.0068 19.4 7.9 25 34-58 175-199 (210)
36 3rkg_A Magnesium transporter M 20.6 2.6E+02 0.009 20.6 8.3 59 6-68 131-195 (261)
37 3zbh_A ESXA; unknown function, 20.2 1.4E+02 0.0047 17.2 4.6 38 30-68 40-77 (99)
No 1
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=99.83 E-value=1.8e-20 Score=140.87 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=66.8
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10581 1 MAGTETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDK 69 (90)
Q Consensus 1 is~tE~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~ 69 (90)
+|+.|.++..+++|+++++.|+||||+|||+|+.||+||+|+||||+||++|++.|+.|+.+||+|+|.
T Consensus 64 ~s~~~~~~~~v~~aa~~~~~l~pQvv~aar~l~~~p~s~~a~E~l~~~~~~w~~~v~~L~~~vd~~~~~ 132 (256)
T 1h6g_A 64 ISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSI 132 (256)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 578999999999999999999999999999999999999999999999999999999999999999974
No 2
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=99.80 E-value=9.9e-20 Score=155.81 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=62.8
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10581 1 MAGTETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDK 69 (90)
Q Consensus 1 is~tE~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~ 69 (90)
+|+.|.+....++++++++.||||||+|||+|+.||+||+|+||||+||++|+++|+.|+++||+|+|.
T Consensus 359 ~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~v~~L~~avDdi~di 427 (832)
T 4igg_A 359 ISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSI 427 (832)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 466777666777777779999999999999999999999999999999999999999999999999873
No 3
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=99.18 E-value=2.7e-11 Score=104.99 Aligned_cols=62 Identities=27% Similarity=0.392 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 7 LQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 7 L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
..-..+.+..+|+.+|||||+|||+++.+|+|++|++||+.|+++|.+.+.+|+++||+|.|
T Consensus 657 ~~~~i~~aa~~l~~~t~~lv~aar~~~~~p~n~~Ak~~l~~~~~~~~~~v~~L~~~V~~i~d 718 (1066)
T 1tr2_A 657 TVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAID 718 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCTHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33445577778999999999999999999999999999999999999999999999999887
No 4
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=93.69 E-value=0.32 Score=35.64 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 13 HAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 13 ~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
-|-..|+..+|-+++|-++...||++.-|++|-|-... .|+.++++|++
T Consensus 153 aAr~~Lk~~sp~L~ta~k~~lrhp~~~~a~~nRd~v~~-------qm~~al~~I~~ 201 (205)
T 1dow_A 153 AARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYK-------QLQQAVTGISN 201 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 35567999999999999999999999999999995553 45555555554
No 5
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=90.61 E-value=1.4 Score=30.38 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 13 HAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 13 ~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
.|.+.|..-.+.+|+|||-.+.||+|+.++. .|.+...+|..++.++..
T Consensus 78 ~AAk~La~At~~MVeaAK~~A~NP~d~~~q~-------~Lr~Aae~L~~at~~~~~ 126 (131)
T 2l7a_A 78 SAAKILADATAKMVEAAKGAAAHPDSEEQQQ-------RLREAAEGLRMATNAAAQ 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4555689999999999999999999966554 466677778888877764
No 6
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=89.37 E-value=1.1 Score=33.48 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 13 HAEYHLKIYAPQLVTAARTLADH-----PSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 13 ~ae~~l~~l~PQVi~Aar~L~~~-----P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
-|-..|+..+|-+++|.++...| |+...|++|=|-.. ..|+.++++|+.
T Consensus 193 ~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~a~~nRd~v~-------~~m~~al~~I~~ 246 (258)
T 3rf3_A 193 NSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTV-------EKMSAEINEIIR 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHhHHHHH-------HHHHHHHHHHHH
Confidence 35568999999999999999999 89999999977665 567777777777
No 7
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=89.13 E-value=2.6 Score=32.38 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 14 AEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEI 66 (90)
Q Consensus 14 ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei 66 (90)
+...+-.-+=++|.+||-|+.+|.+.-.+++|-..-..=.+.|++|.+.+.+.
T Consensus 252 a~r~v~~~s~~ll~taK~la~~P~dp~~~~~La~~ar~VSdsI~~Li~ai~~~ 304 (309)
T 2x0c_A 252 SAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDK 304 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34447777889999999999999999999888888888888888877776654
No 8
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=86.69 E-value=2 Score=31.70 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHhh-hhHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 13 HAEYHLKI-YAPQLVTAARTL----ADHPSSKIAKENLEVFADMWQALVSDITTLC 63 (90)
Q Consensus 13 ~ae~~l~~-l~PQVi~Aar~L----~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lv 63 (90)
.|...|+. +.|+++.+|+.. +.+|++...+.+|-.=.+.--+.++.++.+|
T Consensus 198 ~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~a~~~L~~~v~~vr~av 253 (256)
T 1h6g_A 198 EATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAV 253 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445888 599999999996 9999997777666555544445555555443
No 9
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=78.95 E-value=6.7 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=39.2
Q ss_pred HHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 14 AEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 14 ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
|-..|+...|-++.|.++...||+..-|++|=|-..+ .|+.++++|+.
T Consensus 129 Ar~~Lk~~spmLlta~Kt~lrhp~~~~A~~nRd~v~~-------qm~~al~~Ii~ 176 (832)
T 4igg_A 129 ARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYK-------QLQQAVTGISN 176 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4457999999999999999999999999999987764 45555555554
No 10
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=72.55 E-value=19 Score=25.27 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 23 PQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITT 61 (90)
Q Consensus 23 PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~ 61 (90)
=++.++|+.++.+|+++-++..|-..-+.=.+.||.|-+
T Consensus 114 ~~LL~~ak~~~~dp~~pn~~~~L~sAaR~VtesIN~Lv~ 152 (158)
T 2l10_A 114 SKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLIT 152 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999986666665555444444444433
No 11
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=71.73 E-value=6.1 Score=34.48 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 8 QVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKE 65 (90)
Q Consensus 8 ~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvde 65 (90)
+.....|...|....|++|.+++.++.+|.++.+..+|-.=...=.+.|..|...+..
T Consensus 780 q~~v~~a~k~l~~s~~~li~~aK~~a~~p~d~~~~~~l~~~~k~v~~~V~~l~~av~~ 837 (1066)
T 1tr2_A 780 REAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQP 837 (1066)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCChHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 4455667777999999999999999999999776655443333334444444444433
No 12
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=67.96 E-value=30 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 22 APQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 22 ~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
..++++++|..+.+|+++.++.+|..--..-......|-.+++++.+
T Consensus 152 t~~L~~~cr~as~~~~n~~~k~ql~~~ak~va~st~~lV~~iK~ld~ 198 (309)
T 2x0c_A 152 TSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDG 198 (309)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566888888999999999999977766666666666555555544
No 13
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=63.33 E-value=3.5 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10581 44 NLEVFADMWQALVSDITTLC 63 (90)
Q Consensus 44 n~d~f~~~W~~~v~~Lt~lv 63 (90)
+.+-++++|+..|.++.+.+
T Consensus 2 ~~e~mr~Q~~~lveKvq~a~ 21 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAAV 21 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999988765
No 14
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=49.64 E-value=33 Score=23.33 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy10581 10 ATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALV 56 (90)
Q Consensus 10 ta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v 56 (90)
...+...+|..|--+|-.+|.-|+..|+ -+||-.||+.=.+-+
T Consensus 35 ~~~~~~e~L~~ll~~I~~~G~rL~~~~t----~~~l~~YK~lVk~Fl 77 (145)
T 2qup_A 35 RDEKAYERLQALMSKIDDQGKLLSETRT----IEELRKYKELVKEFV 77 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHH
Confidence 3455568899999999999999999986 689999995544333
No 15
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=47.04 E-value=84 Score=23.19 Aligned_cols=60 Identities=23% Similarity=0.095 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 7 LQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEI 66 (90)
Q Consensus 7 L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei 66 (90)
|.-.-.-|...++.-|-.+..||+.+..+|.|..+++.|=.=-+.--..|.+|=-+.|.+
T Consensus 70 lk~eM~~A~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~vtrlLllaD~~ 129 (258)
T 3rf3_A 70 LKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEA 129 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556679999999999999999999999999988554444444444444444443
No 16
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=44.02 E-value=21 Score=24.71 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.6
Q ss_pred HHhhhhHHHHHHHHHHhhCCCCH
Q psy10581 17 HLKIYAPQLVTAARTLADHPSSK 39 (90)
Q Consensus 17 ~l~~l~PQVi~Aar~L~~~P~Sk 39 (90)
.|-.-+..+|.|||-.+.||+|+
T Consensus 112 ~lAdATa~mVeAAk~~a~nP~~~ 134 (139)
T 1u89_A 112 ILADATAKMVEAAKGAAAHPDSE 134 (139)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCch
Confidence 48888899999999999999985
No 17
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=42.50 E-value=35 Score=22.95 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEI 66 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei 66 (90)
+++..+.|+..|......|..+++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~l~d~ 121 (122)
T 1bm9_A 96 AKLYKKQLKVELDRCKKLIEKALSDN 121 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34588999999999999999999986
No 18
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=36.94 E-value=59 Score=19.89 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 39 KIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 39 k~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
--|.+-|+.....|...+.+|..++++|-.
T Consensus 52 G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 52 GAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999886
No 19
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=36.76 E-value=57 Score=23.89 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=28.2
Q ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHH
Q psy10581 23 PQLVTAARTLA--DHPSSKIAKENLEVFADMWQALVS 57 (90)
Q Consensus 23 PQVi~Aar~L~--~~P~Sk~A~En~d~f~~~W~~~v~ 57 (90)
-+|...|.-|. .||.+...++.++.+++.|.+...
T Consensus 65 ~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~ 101 (283)
T 3pe0_A 65 KELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQ 101 (283)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 35666777775 479999999999999999987544
No 20
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=34.20 E-value=5.9 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cccCCCCceeeeCCC
Q psy10581 48 FADMWQALVSDITTLCKEIMD---KERIPDKHTYMSLPR 83 (90)
Q Consensus 48 f~~~W~~~v~~Lt~lvdei~d---~g~~~~k~~y~slpr 83 (90)
+++-|++.++.|+-++-|.+- .-|.-||+.||.+|-
T Consensus 24 Mr~~~~E~~eIL~GLIgDLtiaV~vikdYE~kp~~h~p~ 62 (192)
T 3jrt_A 24 MSDKWIEIEEILSGLIGDLTIAVTVLKDYEGKAFLREPQ 62 (192)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSGG
T ss_pred hhhhHHHHHHHHHHhhccceeehhhHhhhccCccccchH
Confidence 467899999988888888775 445678888998874
No 21
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=33.81 E-value=34 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 42 KENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 42 ~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
+.|-++|+..|+.-+.+-.. +++.-|
T Consensus 28 k~adermK~~w~~Ii~KY~~-~edqgD 53 (63)
T 2yfv_C 28 KKADENMKRVWSQIIQKYES-IDNQGD 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-GGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccCCCc
Confidence 56778899999999999886 444333
No 22
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=32.71 E-value=81 Score=18.86 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 38 SKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 38 Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
.-.|.+-|+..-..|...+..|..++++|.+
T Consensus 45 ~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~ 75 (101)
T 3fav_A 45 RGAAGTAAQAAVVRFQEAANKQKQELDEIST 75 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999886
No 23
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=32.63 E-value=58 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 21 YAPQLVTAARTLAD--HPSSKIAKENLEVFADMWQALVSDITTL 62 (90)
Q Consensus 21 l~PQVi~Aar~L~~--~P~Sk~A~En~d~f~~~W~~~v~~Lt~l 62 (90)
++|.+++--+-... +.+..+-+.++-.++|+|.+.+..+-..
T Consensus 138 ~~P~il~ki~~~l~~~~l~~~Vl~~~l~~LkEEW~nKaK~l~~~ 181 (226)
T 3v42_A 138 VGPTILNKIEAALTNQNLSVDVVDQALVALKEEWMNKVKVLFKF 181 (226)
T ss_dssp CCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhHhheeeeh
Confidence 46888887776665 4777888889999999999988776443
No 24
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=30.77 E-value=87 Score=21.36 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHHHH--hhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy10581 25 LVTAARTL--ADHPSSKIAKENLEVFADMWQALVSDI 59 (90)
Q Consensus 25 Vi~Aar~L--~~~P~Sk~A~En~d~f~~~W~~~v~~L 59 (90)
|...|.-| ..||.+...++-++.+.+.|.+....+
T Consensus 179 v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~~L~~l~ 215 (224)
T 2iak_A 179 VQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLC 215 (224)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555 457998999999999999998866543
No 25
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=30.53 E-value=1.6e+02 Score=21.54 Aligned_cols=52 Identities=29% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHhhhhHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 17 HLKIYAPQLVTAARTLADHPS-SKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 17 ~l~~l~PQVi~Aar~L~~~P~-Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
+|-.=+-|++.|+|.---||+ ..-+...++.-.+.-.+.|.+|..-+.++..
T Consensus 136 tv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~l~eai~d~~~tl~~~as 188 (216)
T 4f7g_B 136 TLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAAS 188 (216)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999998 8777888888888888888887777777665
No 26
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=30.52 E-value=61 Score=19.02 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
|.+-|+.....|...+.+|..++++|..
T Consensus 46 A~~af~~~~~~w~~~~~~~~~~L~~i~~ 73 (94)
T 3fav_B 46 GSEAYQGVQQKWDATATELNNALQNLAR 73 (94)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999887
No 27
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=29.03 E-value=1.2e+02 Score=23.40 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy10581 22 APQLVTAARTLADHPSSKIAKENLEVFADMWQALVS 57 (90)
Q Consensus 22 ~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~ 57 (90)
.-.+..|...+|..|+ .+|++..|+.|.....
T Consensus 249 a~~L~~a~~a~~a~Pt----~~~L~aar~Aw~~Ar~ 280 (361)
T 3oyv_A 249 NDALYNAVIVLADNPS----NSAFETACDAWITARE 280 (361)
T ss_dssp HHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHH
Confidence 3456778888999996 6999999999987654
No 28
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=25.62 E-value=1.9e+02 Score=20.74 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10581 11 TYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEI 66 (90)
Q Consensus 11 a~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei 66 (90)
-.-|...++.-|--+..|++.+..+|.|...++.|=.=-+.--..|.+|=-+.|.+
T Consensus 34 M~~A~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlLllaD~~ 89 (205)
T 1dow_A 34 LVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMA 89 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456668888888999999999999999999887554444444444444444443
No 29
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=24.89 E-value=42 Score=22.69 Aligned_cols=33 Identities=9% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhc
Q psy10581 37 SSKIAKENLEVFADMWQAL---------VSDITTLCKEIMDK 69 (90)
Q Consensus 37 ~Sk~A~En~d~f~~~W~~~---------v~~Lt~lvdei~d~ 69 (90)
+..+-+++|+.|.+.|++. ..+|..+++++--+
T Consensus 34 ~~~l~~~dl~~F~~~W~~fDP~aTg~I~~~~L~~ll~~L~pP 75 (129)
T 2kav_A 34 AEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPP 75 (129)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTCCCEECGGGHHHHHHHSCTT
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCceEEeHHHHHHHHHhCCcc
Confidence 3447799999999999986 56777777777663
No 30
>3pf0_A Imelysin-like protein; putative metalloendopeptidase, structural genomics, joint CE structural genomics, JCSG; 2.15A {Psychrobacter arcticus}
Probab=24.83 E-value=1e+02 Score=23.59 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy10581 19 KIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSD 58 (90)
Q Consensus 19 ~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~ 58 (90)
..-+-++..|...+|..|+ .+.++++.+|+.|.....-
T Consensus 71 ~~~a~~L~~a~~a~c~~ps--~~~~~l~aar~aw~~A~~~ 108 (364)
T 3pf0_A 71 AKQSDLLHDLAQKHCQKAP--VSGDELQALRDQWLVLAQA 108 (364)
T ss_dssp HHHHHHHHHHHHHHGGGCS--BCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHHHH
Confidence 3334466778889999886 2468899999999877654
No 31
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=23.49 E-value=50 Score=19.73 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIMDK 69 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~d~ 69 (90)
|.+-|......|...+.+|..++++|-..
T Consensus 47 A~~ay~~~~~~W~~~~~~l~~~L~~i~~~ 75 (96)
T 3h6p_C 47 TGITYQGWQTQWNQALEDLVRAYQSMSGT 75 (96)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999873
No 32
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=23.13 E-value=1.9e+02 Score=19.90 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc----CCCCceeee
Q psy10581 41 AKENLEVFADMWQALVSDITTLCKEIM---DKER----IPDKHTYMS 80 (90)
Q Consensus 41 A~En~d~f~~~W~~~v~~Lt~lvdei~---d~g~----~~~k~~y~s 80 (90)
.++|.+.+-+-=......|-+++|.++ +.|. .+..|.|..
T Consensus 62 VQkNVv~Ld~N~~~~~dkvnEvid~VN~I~~a~~~~~~~r~~q~~~~ 108 (130)
T 2ibl_A 62 VLRNVEVLDKNIGILKTSLETANSDIKTIQEAGYIPEAPRDGQAYVR 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCCSSCCEEE
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHHhhhccCCcCcccchheee
Confidence 467777776665555555555555554 4222 456677764
No 33
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=23.08 E-value=1.6e+02 Score=19.04 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=48.0
Q ss_pred HHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy10581 15 EYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMDKER 71 (90)
Q Consensus 15 e~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d~g~ 71 (90)
+..+..+.-+|-.|=..|-.+|+++++--++...-..|.=.-+.=++.++-+-|..+
T Consensus 26 ~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~KD~~q 82 (92)
T 2g0u_A 26 DDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMKDIDS 82 (92)
T ss_dssp CTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777787888889999999999999999999999999988999988888443
No 34
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.35 E-value=1.4e+02 Score=17.80 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 26 VTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 26 i~Aar~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
......|... =.-.|.+-|+..-+.|......|..++++|-+
T Consensus 27 ~~~v~~l~~~-W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~ 68 (94)
T 4i0x_A 27 DRDVQSLFGV-WKGSAADAYRSGWDEMQDGATKVWNALTDIAS 68 (94)
T ss_dssp HHHHHHGGGT-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344433 23468899999999999999999999999987
No 35
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=21.16 E-value=2e+02 Score=19.44 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHH
Q psy10581 34 DHPSSKIAKENLEVFADMWQALVSD 58 (90)
Q Consensus 34 ~~P~Sk~A~En~d~f~~~W~~~v~~ 58 (90)
.||.+...++-++.+...|.+.+..
T Consensus 175 ~h~~~~~I~~~~~~l~~~W~~L~~L 199 (210)
T 3pdy_A 175 DHPARPTVESFQAALQTQWSWMLQL 199 (210)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999976543
No 36
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=20.56 E-value=2.6e+02 Score=20.64 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q psy10581 6 TLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFA------DMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 6 ~L~vta~~ae~~l~~l~PQVi~Aar~L~~~P~Sk~A~En~d~f~------~~W~~~v~~Lt~lvdei~d 68 (90)
.|+..|..-+..++.+-|.+..+=..|..+-+ .++++.+. ......+..++++++++.|
T Consensus 131 ~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~----~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLd 195 (261)
T 3rkg_A 131 IFINVMSALETDFKLHSQICIQILNDLENEVN----RLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLE 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 46788899999999999988887777765543 46777654 4455667778888888887
No 37
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.18 E-value=1.4e+02 Score=17.24 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=26.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10581 30 RTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68 (90)
Q Consensus 30 r~L~~~P~Sk~A~En~d~f~~~W~~~v~~Lt~lvdei~d 68 (90)
..|...=.- .|.+.|..--+.|...+..+..++++|..
T Consensus 40 ~~L~~~W~G-~a~~af~~~~~~~~~~~~~~~~~L~~i~~ 77 (99)
T 3zbh_A 40 HTLQGIWEG-ASSEAFIQQYQELRPSFEKMAVLLNEVGQ 77 (99)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333 35666766667899999999999998876
Done!