RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10581
         (90 letters)



>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo
           sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
          Length = 256

 Score = 65.6 bits (159), Expect = 1e-14
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 1   MAGTETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDIT 60
           ++  E        +   L+   PQ++ AA  LA  P SK+A+EN+++F + W+  V  +T
Sbjct: 64  ISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLT 123

Query: 61  TLCKEIMD 68
               +I  
Sbjct: 124 DAVDDITS 131


>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
           sapiens} PDB: 1st6_A
          Length = 1066

 Score = 44.9 bits (104), Expect = 5e-07
 Identities = 17/68 (25%), Positives = 32/68 (47%)

Query: 5   ETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCK 64
           ++       +    +   PQ+V+AAR L  +P ++ A E+ E   + W   V  +T L  
Sbjct: 655 KSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVD 714

Query: 65  EIMDKERI 72
           E +D + +
Sbjct: 715 EAIDTKSL 722


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.2 bits (72), Expect = 0.009
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)

Query: 15 EYHLKIYAPQLVTAARTLA 33
          +  LK+YA     +A  LA
Sbjct: 26 QASLKLYADD---SAPALA 41


>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus
           musculus} SCOP: a.24.9.1 PDB: 1dov_A
          Length = 205

 Score = 29.7 bits (66), Expect = 0.079
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18  LKIYAPQLVTAARTLADHPSSKIAKENLE-VFADMWQAL 55
           L+   P L TA++    HP     K N + ++  + QA+
Sbjct: 158 LQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAV 196


>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
           ATP-binding, aminoacyl-tRNA synthetase, ligas
           nucleotide-binding, protein biosynthesis, ligase-RNA
           comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
          Length = 466

 Score = 26.7 bits (60), Expect = 0.87
 Identities = 3/17 (17%), Positives = 10/17 (58%), Gaps = 3/17 (17%)

Query: 37  SSKIAKENLEVFADMWQ 53
           +S++AK    +  ++ +
Sbjct: 377 TSRVAK---SLLPEVLE 390


>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
           helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
           GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
           a.211.1.1 d.218.1.8
          Length = 393

 Score = 26.4 bits (59), Expect = 1.4
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)

Query: 30  RTLADHPSSK---IAKENLEVFA 49
           RTL      K   I++E +E++A
Sbjct: 150 RTLKHLRKDKQERISRETMEIYA 172


>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
           ATP-binding, hydrogen ION transport, hydrolase, ION
           transport; HET: ACP; 3.60A {Arabidopsis thaliana}
          Length = 885

 Score = 25.7 bits (57), Expect = 2.4
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 51  MWQALVSDIT--TLCKEIMDKERIPDK 75
           +  A+++D T  T+ K+ +     PD 
Sbjct: 677 LIIAILNDGTIMTISKDRVKPSPTPDS 703


>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
           resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
           megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
           1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
           2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
           2ij3_A* 2ij4_A* 3hf2_A* ...
          Length = 470

 Score = 25.3 bits (56), Expect = 3.6
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 18  LKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLC 63
           +K Y   +V  A  L        A E++EV  DM   L  D   LC
Sbjct: 112 MKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDM-TRLTLDTIGLC 156


>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
           {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
          Length = 361

 Score = 24.3 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 17  HLKIYAPQLVTAARTLADHPSSKIAK 42
           H K  AP       T  DH +  IAK
Sbjct: 281 HCKQLAPIWDKLGETYKDHENIVIAK 306


>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
           genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
           PDB: 1vh3_A 3duv_A*
          Length = 262

 Score = 24.0 bits (53), Expect = 9.1
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 57  SDITTLCKEIMDKERIPDKH 76
            ++ +L  +I D E + + +
Sbjct: 121 VNMASLAVKIHDAEELFNPN 140


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0827    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,355,587
Number of extensions: 66583
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 22
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)