RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10581
         (90 letters)



>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 131

 Score = 77.1 bits (190), Expect = 1e-20
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 1   MAGTETLQVATYHAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDIT 60
           ++  E        +   L+   PQ++ AA  LA  P SK+A+EN+++F + W+  V  +T
Sbjct: 64  ISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLT 123

Query: 61  TLCKEI 66
               +I
Sbjct: 124 DAVDDI 129


>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 72

 Score = 73.3 bits (180), Expect = 1e-19
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 13 HAEYHLKIYAPQLVTAARTLADHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68
                +   PQ+V+AAR L  +P ++ A E+ E   + W   V  +T L  E +D
Sbjct: 17 ATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAID 72


>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 181

 Score = 30.2 bits (68), Expect = 0.022
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18  LKIYAPQLVTAARTLADHPSSKIAKENLE-VFADMWQAL 55
           L+   P L TA++    HP     K N + ++  + QA+
Sbjct: 133 LQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAV 171


>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 138

 Score = 26.4 bits (58), Expect = 0.38
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 23  PQLVTAARTLADHPSSKIAKE 43
            ++V AA+  A HP S+  ++
Sbjct: 117 AKMVEAAKGAAAHPDSEEQQQ 137


>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 137

 Score = 24.3 bits (53), Expect = 1.8
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 23 PQLVTAARTLADHPSSKIAKENL 45
            +V  A+ +A + S    +++ 
Sbjct: 77 SPMVMDAKAVAGNISDPGLQKSF 99


>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 23.8 bits (51), Expect = 3.3
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 34  DHPSSKIAKENLEVFADMWQALVSDITTLCKEIMD-KER 71
           +   +K A+E + V           +T L K+I   KE 
Sbjct: 89  ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEA 127


>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
          {Prochlorococcus marinus [TaxId: 1219]}
          Length = 122

 Score = 23.2 bits (50), Expect = 5.7
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 42 KENLEVFADMWQALVSDITTLCKEIMDKERI 72
          K   ++  ++   L      + +++M  E I
Sbjct: 35 KSEWKILVEVVMELCDQYKLVKEQLMGDEDI 65


>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
          {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 121

 Score = 22.7 bits (49), Expect = 6.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 42 KENLEVFADMWQALVSDITTLCKEIMDKERI 72
             +  F  + Q L   I  +  E+M +ER+
Sbjct: 37 AAEMADFCRLVQQLAETIAAIAPELMPEERL 67


>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
           {Escherichia coli [TaxId: 562]}
          Length = 213

 Score = 22.5 bits (48), Expect = 9.4
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 35  HPSSKIAKENLEVFADMWQALVSDITTLCKEIMD 68
            P   +  +  E F+ +     SDI       + 
Sbjct: 84  DPQFTVFHQETETFSALSCPYSSDIDQFMVNYLS 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,692
Number of extensions: 11964
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 14
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)