BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10589
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J43|A Chain A, Alpha-Glucan Recognition By Family 41 Carbohydrate-Binding
           Modules From Streptococcal Virulence Factors
 pdb|2J43|B Chain B, Alpha-Glucan Recognition By Family 41 Carbohydrate-Binding
           Modules From Streptococcal Virulence Factors
          Length = 219

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 47  TEVYVEDTDFRFSSSPYYL 65
           T+V+V+DTD +  ++PYY+
Sbjct: 200 TQVFVKDTDPKVYNNPYYI 218


>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
           Acid Dehydrogenase From Methanosarcina Mazei Go1
 pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
           Acid Dehydrogenase From Methanosarcina Mazei Go1
          Length = 478

 Score = 25.8 bits (55), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 3   PPMFELVQSEEDQAVIMLTPMFELLQSEEDVTIIIKAPYANIADTE 48
           P + EL+           TP F  +   + VT+ I+ P+AN  D E
Sbjct: 75  PGLEELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANPKDLE 120


>pdb|2K8Q|A Chain A, Nmr Structure Of Shq1p N-Terminal Domain
          Length = 134

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 LTPMFELLQSEEDVTIIIKAPYANI----ADTEVYVEDTDFRFSSSPYYLR 66
          +TP F + Q EE   I +K   +NI       E+ +++    F  SPYYLR
Sbjct: 2  ITPRFSITQDEE--FIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLR 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,692,470
Number of Sequences: 62578
Number of extensions: 47795
Number of successful extensions: 123
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)