Query psy10589
Match_columns 66
No_of_seqs 102 out of 108
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 22:14:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3247|consensus 99.4 1.8E-14 4E-19 113.7 -0.0 48 19-66 1-48 (466)
2 cd06469 p23_DYX1C1_like p23_li 97.9 2.2E-05 4.8E-10 45.6 4.2 39 27-65 2-40 (78)
3 PF04969 CS: CS domain; Inter 97.3 0.00099 2.1E-08 37.6 5.6 40 22-61 1-42 (79)
4 cd06463 p23_like Proteins cont 97.0 0.0027 5.8E-08 35.8 4.9 34 27-60 2-35 (84)
5 cd00298 ACD_sHsps_p23-like Thi 96.1 0.023 5E-07 30.7 4.7 34 27-60 2-35 (80)
6 cd06467 p23_NUDC_like p23_like 95.4 0.081 1.8E-06 30.9 5.7 38 24-61 1-39 (85)
7 cd06466 p23_CS_SGT1_like p23_l 95.4 0.037 8.1E-07 32.1 4.1 35 26-60 2-36 (84)
8 cd06465 p23_hB-ind1_like p23_l 95.3 0.079 1.7E-06 33.0 5.6 38 22-61 1-38 (108)
9 cd06468 p23_CacyBP p23_like do 94.9 0.13 2.8E-06 30.8 5.5 39 23-61 3-44 (92)
10 cd06471 ACD_LpsHSP_like Group 93.8 0.28 6.2E-06 29.5 5.4 38 22-59 1-38 (93)
11 cd06493 p23_NUDCD1_like p23_NU 93.7 0.25 5.4E-06 29.7 5.0 37 25-61 2-39 (85)
12 cd06470 ACD_IbpA-B_like Alpha- 93.1 0.29 6.2E-06 29.9 4.7 38 22-59 1-39 (90)
13 cd00237 p23 p23 binds heat sho 93.1 0.37 7.9E-06 31.0 5.3 38 22-61 2-39 (106)
14 cd06489 p23_CS_hSgt1_like p23_ 93.0 0.27 5.9E-06 29.1 4.3 34 27-60 3-36 (84)
15 cd06494 p23_NUDCD2_like p23-li 92.4 0.58 1.3E-05 29.5 5.5 41 21-61 5-46 (93)
16 PF00011 HSP20: Hsp20/alpha cr 92.4 0.86 1.9E-05 27.3 6.0 36 25-60 1-36 (102)
17 cd06488 p23_melusin_like p23_l 92.1 0.62 1.3E-05 28.2 5.1 37 23-59 2-38 (87)
18 cd06464 ACD_sHsps-like Alpha-c 91.9 0.56 1.2E-05 26.6 4.6 35 26-60 2-36 (88)
19 COG0071 IbpA Molecular chapero 91.9 0.48 1E-05 31.1 4.8 42 19-60 38-79 (146)
20 cd06495 p23_NUDCD3_like p23-li 91.6 0.77 1.7E-05 29.6 5.5 41 21-61 4-46 (102)
21 PF08190 PIH1: pre-RNA process 90.7 0.6 1.3E-05 33.2 4.7 39 28-66 258-299 (328)
22 cd06492 p23_mNUDC_like p23-lik 88.3 1.7 3.7E-05 26.8 4.8 37 25-61 2-41 (87)
23 cd06478 ACD_HspB4-5-6 Alpha-cr 87.3 2.1 4.6E-05 25.9 4.8 36 25-60 1-36 (83)
24 PRK11597 heat shock chaperone 87.1 1.7 3.6E-05 29.6 4.6 40 21-60 32-72 (142)
25 PRK10743 heat shock protein Ib 85.0 3.8 8.2E-05 27.5 5.5 39 22-60 35-74 (137)
26 cd06472 ACD_ScHsp26_like Alpha 84.4 4.3 9.3E-05 24.4 5.1 37 24-60 2-39 (92)
27 cd06475 ACD_HspB1_like Alpha c 83.4 5.3 0.00012 24.4 5.3 36 25-60 4-39 (86)
28 cd06497 ACD_alphaA-crystallin_ 81.5 6.9 0.00015 23.9 5.3 36 25-60 4-39 (86)
29 PLN03088 SGT1, suppressor of 79.2 4.6 0.0001 30.0 4.6 39 22-60 157-195 (356)
30 cd06479 ACD_HspB7_like Alpha c 77.1 7.5 0.00016 23.9 4.4 35 26-60 3-37 (81)
31 PF09294 Interfer-bind: Interf 74.4 4.8 0.0001 24.0 3.0 21 21-41 5-25 (106)
32 cd06498 ACD_alphaB-crystallin_ 73.0 15 0.00032 22.4 5.0 35 26-60 2-36 (84)
33 cd06482 ACD_HspB10 Alpha cryst 72.0 12 0.00026 23.4 4.5 34 27-60 4-37 (87)
34 cd06526 metazoan_ACD Alpha-cry 69.6 13 0.00029 21.9 4.2 32 28-59 4-35 (83)
35 cd06476 ACD_HspB2_like Alpha c 69.0 17 0.00036 22.2 4.6 34 27-60 3-36 (83)
36 cd06490 p23_NCB5OR p23_like do 67.6 9.3 0.0002 23.2 3.3 24 25-48 2-25 (87)
37 KOG3158|consensus 65.7 8.5 0.00019 28.0 3.2 45 16-62 2-46 (180)
38 cd05721 IgV_CTLA-4 Immunoglobu 63.9 9.9 0.00022 25.4 3.1 44 21-65 60-103 (115)
39 cd06477 ACD_HspB3_Like Alpha c 59.6 28 0.00061 21.4 4.4 32 29-60 5-36 (83)
40 cd06481 ACD_HspB9_like Alpha c 58.8 29 0.00063 21.1 4.3 31 30-60 6-36 (87)
41 PF06638 Strabismus: Strabismu 53.3 27 0.00058 28.9 4.4 39 23-61 461-500 (505)
42 PF08781 DP: Transcription fac 40.2 26 0.00056 24.4 2.2 28 36-63 54-90 (142)
43 PF03368 Dicer_dimer: Dicer di 39.7 28 0.00061 21.4 2.1 24 18-41 18-41 (90)
44 PF09087 Cyc-maltodext_N: Cycl 37.4 90 0.002 19.9 4.2 28 27-54 45-72 (88)
45 TIGR03000 plancto_dom_1 Planct 33.5 51 0.0011 20.8 2.6 25 34-62 4-35 (75)
46 PF10986 DUF2796: Protein of u 33.1 65 0.0014 22.4 3.3 26 23-48 10-35 (168)
47 TIGR01633 phi3626_gp14_N putat 32.9 75 0.0016 19.3 3.2 40 23-63 82-122 (124)
48 KOG1309|consensus 30.3 1.2E+02 0.0026 22.5 4.4 35 22-56 4-38 (196)
49 PF12866 DUF3823: Protein of u 30.1 1E+02 0.0023 22.3 4.0 45 21-65 58-116 (222)
50 PF08368 FAST_2: FAST kinase-l 29.9 57 0.0012 20.0 2.3 27 29-55 63-89 (93)
51 cd08759 Type_III_cohesin_like 28.5 72 0.0016 22.4 2.9 44 16-59 1-47 (160)
52 cd06263 MAM Meprin, A5 protein 27.7 1.6E+02 0.0035 18.4 4.4 40 13-52 55-94 (157)
53 COG2892 Uncharacterized protei 27.0 92 0.002 20.2 3.0 19 23-41 36-54 (82)
54 PF09441 Abp2: ARS binding pro 26.1 33 0.00071 25.0 0.8 21 44-64 9-29 (175)
55 PF14579 HHH_6: Helix-hairpin- 25.9 66 0.0014 19.5 2.1 20 35-54 2-21 (90)
56 PF12135 Sialidase_penC: Siali 25.3 65 0.0014 16.4 1.7 12 21-32 8-19 (25)
57 PF14651 Lipocalin_7: Lipocali 25.2 1.1E+02 0.0025 20.4 3.3 23 20-42 35-57 (128)
58 PHA02966 hypothetical protein; 24.9 76 0.0016 19.8 2.2 20 13-32 38-57 (67)
59 PF03718 Glyco_hydro_49: Glyco 24.2 1.3E+02 0.0028 25.6 4.0 42 18-61 126-172 (582)
60 PF03803 Scramblase: Scramblas 23.7 1.8E+02 0.0038 19.7 4.1 34 18-51 126-162 (221)
61 PF04571 Lipin_N: lipin, N-ter 23.5 36 0.00079 22.9 0.6 18 49-66 31-48 (110)
62 PRK15224 pili assembly chapero 23.4 60 0.0013 23.7 1.8 40 2-42 78-119 (237)
63 PF08308 PEGA: PEGA domain; I 23.2 54 0.0012 18.4 1.3 14 43-56 9-22 (71)
64 PF08722 Tn7_Tnp_TnsA_N: TnsA 22.6 1.8E+02 0.0039 17.2 3.7 25 16-40 29-57 (88)
65 PF12544 LAM_C: Lysine-2,3-ami 22.1 1.5E+02 0.0034 20.5 3.5 28 9-36 18-45 (127)
66 PF09732 CactinC_cactus: Cactu 21.4 1.3E+02 0.0028 20.7 3.0 32 21-52 58-98 (125)
67 PF14501 HATPase_c_5: GHKL dom 21.4 1.5E+02 0.0033 17.5 3.1 18 23-40 83-100 (100)
68 KOG4024|consensus 21.1 1.5E+02 0.0031 22.9 3.5 54 9-62 141-194 (266)
69 PF10437 Lip_prot_lig_C: Bacte 20.7 88 0.0019 18.5 1.9 30 21-50 2-35 (86)
70 smart00406 IGv Immunoglobulin 20.4 1.6E+02 0.0034 15.6 2.7 31 21-51 48-78 (81)
71 PF01483 P_proprotein: Proprot 20.4 1.3E+02 0.0029 17.6 2.6 21 31-51 2-22 (87)
72 KOG4015|consensus 20.3 69 0.0015 22.0 1.5 27 14-40 31-57 (133)
No 1
>KOG3247|consensus
Probab=99.43 E-value=1.8e-14 Score=113.67 Aligned_cols=48 Identities=40% Similarity=0.625 Sum_probs=47.5
Q ss_pred EEeeeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEecCcccC
Q psy10589 19 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLR 66 (66)
Q Consensus 19 MITP~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~PYyLR 66 (66)
||||+|++|||++|++++|++|+.+++++|+.+.++.+.|++.|||||
T Consensus 1 Mltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflr 48 (466)
T KOG3247|consen 1 MLTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLR 48 (466)
T ss_pred CCCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccchhHHh
Confidence 999999999999999999999999999999999999999999999998
No 2
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.91 E-value=2.2e-05 Score=45.61 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=37.0
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEecCccc
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYL 65 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~PYyL 65 (66)
.|+++.|+|+|.+|.++..++++.++++.++++++||.+
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~ 40 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLF 40 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEE
Confidence 699999999999999999999999999999999999875
No 3
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.35 E-value=0.00099 Score=37.57 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=35.1
Q ss_pred eeEEEeecCCeEEEEEEc-cc-ccccceEEEEeCCEEEEEec
Q psy10589 22 PMFELLQSEEDVTIIIKA-PY-ANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~-P~-ikas~~Ei~Id~~~F~F~~~ 61 (66)
|+++-.|+++.|.|.|.+ |. ++.+++.+.++++.+.+.++
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~ 42 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIK 42 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEE
Confidence 789999999999999999 44 36999999999999999875
No 4
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=96.98 E-value=0.0027 Score=35.78 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=32.0
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+|+++.|+|.|.+|.+..+++++.++++.+.+.+
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~ 35 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSV 35 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEe
Confidence 6999999999999999999999999999999887
No 5
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=96.06 E-value=0.023 Score=30.68 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.7
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
.|+++.++|.|.+|.....++++.++++.+.+..
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~ 35 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISG 35 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 6889999999999999999999999999998874
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=95.45 E-value=0.081 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=33.4
Q ss_pred EEEeecCCeEEEEEEccc-ccccceEEEEeCCEEEEEec
Q psy10589 24 FELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 24 F~itQDdefV~I~I~~P~-ikas~~Ei~Id~~~F~F~~~ 61 (66)
++-+|+++.|.|.|.+|. ++..++++.+.++.+.+..+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 356899999999999985 58999999999999999876
No 7
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=95.43 E-value=0.037 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.8
Q ss_pred EeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 26 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 26 itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
-.|+++.|+|+|.+|-+...++.+.+.++.+.+.+
T Consensus 2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~ 36 (84)
T cd06466 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSI 36 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEE
Confidence 36999999999999998889999999999998865
No 8
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=95.29 E-value=0.079 Score=32.98 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=33.9
Q ss_pred eeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEec
Q psy10589 22 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~ 61 (66)
|.+.-+|+++.|+|+|.+|.+ .++++.+..+.+.|.+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~ 38 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAK 38 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEE
Confidence 678889999999999999987 88899999999988764
No 9
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.88 E-value=0.13 Score=30.75 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=34.2
Q ss_pred eEEEeecCCeEEEEEEcccccc---cceEEEEeCCEEEEEec
Q psy10589 23 MFELLQSEEDVTIIIKAPYANI---ADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P~ika---s~~Ei~Id~~~F~F~~~ 61 (66)
++.-+|.++.|.|.|.+|.+.. .++++.++++.+.+.+.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~ 44 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVH 44 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEE
Confidence 4678999999999999998865 89999999999999873
No 10
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=93.81 E-value=0.28 Score=29.46 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=33.8
Q ss_pred eeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEE
Q psy10589 22 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~ 59 (66)
|+.++.++++.+.|.+.+|-++..++++.++|+...-.
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~ 38 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTIS 38 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEE
Confidence 46788999999999999999999999999999877653
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=93.75 E-value=0.25 Score=29.69 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=32.9
Q ss_pred EEeecCCeEEEEEEcc-cccccceEEEEeCCEEEEEec
Q psy10589 25 ELLQSEEDVTIIIKAP-YANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 25 ~itQDdefV~I~I~~P-~ikas~~Ei~Id~~~F~F~~~ 61 (66)
+-+|+++.|.|.|.+| .++.+++.+.+..+.+.++.+
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 4589999999999996 779999999999999998875
No 12
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=93.14 E-value=0.29 Score=29.86 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=32.6
Q ss_pred eeEEEeec-CCeEEEEEEcccccccceEEEEeCCEEEEE
Q psy10589 22 PMFELLQS-EEDVTIIIKAPYANIADTEVYVEDTDFRFS 59 (66)
Q Consensus 22 P~F~itQD-defV~I~I~~P~ikas~~Ei~Id~~~F~F~ 59 (66)
|...|.++ ++...|.+.+|-++-.++++.++|+..+-.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~ 39 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVT 39 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEE
Confidence 56788886 489999999999999999999999876654
No 13
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=93.11 E-value=0.37 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=33.1
Q ss_pred eeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEec
Q psy10589 22 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~ 61 (66)
|...--|.++.|+|+|.+|- ++++.+.++++.+.|.++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~ 39 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCL 39 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEE
Confidence 45566799999999999997 689999999999999973
No 14
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=93.01 E-value=0.27 Score=29.11 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=29.8
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
.|+++.|+|+|.++-+...++.+.+.++.+.|..
T Consensus 3 ~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~ 36 (84)
T cd06489 3 YQTESQVVITILIKNVKPEDVSVEFEKRELSATV 36 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEE
Confidence 5999999999999988778888888888888765
No 15
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=92.45 E-value=0.58 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=35.7
Q ss_pred eeeEEEeecCCeEEEEEEccc-ccccceEEEEeCCEEEEEec
Q psy10589 21 TPMFELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 21 TP~F~itQDdefV~I~I~~P~-ikas~~Ei~Id~~~F~F~~~ 61 (66)
|++.+-+|+++-|.|.|.+|. ++++++.+.+..+..+..++
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 678899999999999999886 59999999999888887654
No 16
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=92.43 E-value=0.86 Score=27.34 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=30.2
Q ss_pred EEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 25 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
++.++++.+.|.+.+|-++..++++.++++...-.+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g 36 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISG 36 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceec
Confidence 478999999999999999999999999999876554
No 17
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=92.10 E-value=0.62 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=30.0
Q ss_pred eEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEE
Q psy10589 23 MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~ 59 (66)
|++--|.++.|+|+|.+..+...+..+.++++...+.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~ 38 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIH 38 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEE
Confidence 5677899999999999988888888888877665443
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=91.95 E-value=0.56 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.6
Q ss_pred EeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 26 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 26 itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+.++++.++|.+.+|.++..++++.++++...-.+
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g 36 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISG 36 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 56788999999999999999999999998776653
No 19
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.48 Score=31.12 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=38.2
Q ss_pred EEeeeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 19 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 19 MITP~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
..+|...|.++++.+.|.+-+|=++-.++++.++++.++-..
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g 79 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRG 79 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEE
Confidence 579999999999999999999999999999999999866443
No 20
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=91.63 E-value=0.77 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=36.8
Q ss_pred eeeEEEeecCCeEEEEEEcccc--cccceEEEEeCCEEEEEec
Q psy10589 21 TPMFELLQSEEDVTIIIKAPYA--NIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 21 TP~F~itQDdefV~I~I~~P~i--kas~~Ei~Id~~~F~F~~~ 61 (66)
|++++-+|+.+-|.|.|.+|.- |++++.+.+..+..++..+
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~ 46 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVR 46 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEe
Confidence 6789999999999999999973 7999999999998888874
No 21
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=90.73 E-value=0.6 Score=33.19 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=35.2
Q ss_pred ecCCeEEEEEEcccc-cccceEEEEeCCEEEEEecC--cccC
Q psy10589 28 QSEEDVTIIIKAPYA-NIADTEVYVEDTDFRFSSSP--YYLR 66 (66)
Q Consensus 28 QDdefV~I~I~~P~i-kas~~Ei~Id~~~F~F~~~P--YyLR 66 (66)
...+.+.|+|.+|-+ +++++++.|.++...-.+.. |+|+
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~ 299 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLD 299 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEE
Confidence 346999999999999 99999999999999999988 8874
No 22
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=88.34 E-value=1.7 Score=26.76 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=30.9
Q ss_pred EEeecCCeEEEEEEccc---ccccceEEEEeCCEEEEEec
Q psy10589 25 ELLQSEEDVTIIIKAPY---ANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~---ikas~~Ei~Id~~~F~F~~~ 61 (66)
+-+|+.+-|.|.|.+|. ++++++.+.+..+.+++.++
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~ 41 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK 41 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC
Confidence 45899999999999865 68999999998888887764
No 23
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=87.33 E-value=2.1 Score=25.89 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=31.4
Q ss_pred EEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 25 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+++.+++...|.+-+|-++..++++.++|+..+-+.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g 36 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHG 36 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 467889999999999999999999999998876554
No 24
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=87.11 E-value=1.7 Score=29.58 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=35.5
Q ss_pred eeeEEEee-cCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 21 TPMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 21 TP~F~itQ-DdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
.|...|.+ +++...|.+-+|=++-.++++.++|+..+-..
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~g 72 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKG 72 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEE
Confidence 49999998 57899999999999999999999999877654
No 25
>PRK10743 heat shock protein IbpA; Provisional
Probab=85.05 E-value=3.8 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=34.9
Q ss_pred eeEEEee-cCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 22 PMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 22 P~F~itQ-DdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
|.+.|.. +++.+.|.+-+|=++-.++++.++++..+-..
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~g 74 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKG 74 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 8899995 89999999999999999999999998776544
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=84.42 E-value=4.3 Score=24.43 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=30.6
Q ss_pred EEEeecCCeEEEEEEcccccccceEEEEeCC-EEEEEe
Q psy10589 24 FELLQSEEDVTIIIKAPYANIADTEVYVEDT-DFRFSS 60 (66)
Q Consensus 24 F~itQDdefV~I~I~~P~ikas~~Ei~Id~~-~F~F~~ 60 (66)
..+..+++.++|.+.+|-++..++++.++++ ..+...
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g 39 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISG 39 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEE
Confidence 4678899999999999999999999999864 554443
No 27
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=83.36 E-value=5.3 Score=24.40 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.2
Q ss_pred EEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 25 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+|..+++.+.|.+-+|-++..++++.++++..+-..
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g 39 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITG 39 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEE
Confidence 467788999999999999999999999998776554
No 28
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=81.55 E-value=6.9 Score=23.92 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 25 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+|.-+++...|.+-+|-++..++++.++|+..+-..
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g 39 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHG 39 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 467789999999999999999999999998776554
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=79.21 E-value=4.6 Score=29.97 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred eeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 22 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+|++-.|++++|+|.|.+..+...++.+.+.++.+....
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~ 195 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVI 195 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEE
Confidence 688999999999999999999888888888888766543
No 30
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=77.12 E-value=7.5 Score=23.87 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=30.2
Q ss_pred EeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 26 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 26 itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+..+++.+.|.+-+|-++..++++.++|+...-+.
T Consensus 3 v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~g 37 (81)
T cd06479 3 VKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHA 37 (81)
T ss_pred ccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 45678899999999999999999999999876554
No 31
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=74.43 E-value=4.8 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.5
Q ss_pred eeeEEEeecCCeEEEEEEccc
Q psy10589 21 TPMFELLQSEEDVTIIIKAPY 41 (66)
Q Consensus 21 TP~F~itQDdefV~I~I~~P~ 41 (66)
-|.++++.+++.|.|+|+.|.
T Consensus 5 PP~v~v~~~~~~l~V~i~~P~ 25 (106)
T PF09294_consen 5 PPSVNVSSCGGSLHVTIKPPM 25 (106)
T ss_dssp SSEEEEEEETTEEEEEEEESE
T ss_pred CCEEEEEECCCEEEEEEECCC
Confidence 589999999999999999997
No 32
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=73.03 E-value=15 Score=22.41 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=29.4
Q ss_pred EeecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 26 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 26 itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
++-+++...|.+-+|-++..++++.++|+..+-+.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g 36 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHG 36 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 45568888999999999999999999999776554
No 33
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=72.01 E-value=12 Score=23.37 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=29.4
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+-|++.++|.+-+|-++..++++.++|+..+-..
T Consensus 4 ~~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~g 37 (87)
T cd06482 4 SCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSA 37 (87)
T ss_pred cccCCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 4578899999999999999999999998776554
No 34
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.57 E-value=13 Score=21.90 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=26.7
Q ss_pred ecCCeEEEEEEcccccccceEEEEeCCEEEEE
Q psy10589 28 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59 (66)
Q Consensus 28 QDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~ 59 (66)
.+++.+.|.+.+|-++..++++.++|+...-.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~ 35 (83)
T cd06526 4 DDDEKFQVTLDVKGFKPEELKVKVSDNKLVVE 35 (83)
T ss_pred ccCeeEEEEEECCCCCHHHcEEEEECCEEEEE
Confidence 44468999999999999999999999876543
No 35
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=68.96 E-value=17 Score=22.21 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=28.1
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
.-+++...|.+-+|-.+..++++.++|+..+-+.
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g 36 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSA 36 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEE
Confidence 3467778889999999999999999998776654
No 36
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=67.59 E-value=9.3 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.7
Q ss_pred EEeecCCeEEEEEEcccccccceE
Q psy10589 25 ELLQSEEDVTIIIKAPYANIADTE 48 (66)
Q Consensus 25 ~itQDdefV~I~I~~P~ikas~~E 48 (66)
+--|+++.|+|+|.+......+..
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~ 25 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADI 25 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCcc
Confidence 346899999999988764444433
No 37
>KOG3158|consensus
Probab=65.65 E-value=8.5 Score=28.02 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=38.1
Q ss_pred eeEEEeeeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEecC
Q psy10589 16 AVIMLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP 62 (66)
Q Consensus 16 ~~~MITP~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~P 62 (66)
+++|+-|...--|..+.|+++|-++-. .+.++.++.+-|.|.|+=
T Consensus 2 ~~~~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~~l~fs~k~ 46 (180)
T KOG3158|consen 2 SAGMQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPSKLTFSCKS 46 (180)
T ss_pred CccccCCcchhhhhcCeEEEEEEeccC--ccceeeccccEEEEEecc
Confidence 467889999999999999999998765 456788899999999874
No 38
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=63.92 E-value=9.9 Score=25.40 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred eeeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEecCccc
Q psy10589 21 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYL 65 (66)
Q Consensus 21 TP~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~PYyL 65 (66)
.-+|.|+-|...=.|..++...+++|..+|.-.. ..+|-.||+-
T Consensus 60 ~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~-e~myPPPy~~ 103 (115)
T cd05721 60 LDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI-ELMYPPPYYD 103 (115)
T ss_pred CCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe-eeccCCCEEe
Confidence 4688999999888889999999999999999876 6788999974
No 39
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=59.59 E-value=28 Score=21.42 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=27.2
Q ss_pred cCCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 29 SEEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 29 DdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
+++...|++-+|-++..++++.++|+..+-..
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g 36 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKG 36 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEE
Confidence 45788899999999999999999998876544
No 40
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=58.78 E-value=29 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred CCeEEEEEEcccccccceEEEEeCCEEEEEe
Q psy10589 30 EEDVTIIIKAPYANIADTEVYVEDTDFRFSS 60 (66)
Q Consensus 30 defV~I~I~~P~ikas~~Ei~Id~~~F~F~~ 60 (66)
.+.+.|.+.+|-++..++++.++++...-..
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g 36 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTG 36 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEE
Confidence 3678889999999999999999988776544
No 41
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=53.26 E-value=27 Score=28.91 Aligned_cols=39 Identities=18% Similarity=0.413 Sum_probs=32.3
Q ss_pred eEEEeecCCeEEEEEE-cccccccceEEEEeCCEEEEEec
Q psy10589 23 MFELLQSEEDVTIIIK-APYANIADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 23 ~F~itQDdefV~I~I~-~P~ikas~~Ei~Id~~~F~F~~~ 61 (66)
.|.+.|.|=.++++++ +|+++.+|--+.-..+.|.-.++
T Consensus 461 ~F~Lk~~d~sLvvtv~~iP~~~lsEe~~dpks~kFvLrl~ 500 (505)
T PF06638_consen 461 VFQLKQNDVSLVVTVHKIPFFNLSEEFVDPKSNKFVLRLN 500 (505)
T ss_pred EEEEEeccEEEEEEEecCCceEeeEEeecCCCceEEEecC
Confidence 5999999999999998 99999998877777776665544
No 42
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=40.19 E-value=26 Score=24.35 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=16.1
Q ss_pred EEEcccc-----cccceEEEEeCCE----EEEEecCc
Q psy10589 36 IIKAPYA-----NIADTEVYVEDTD----FRFSSSPY 63 (66)
Q Consensus 36 ~I~~P~i-----kas~~Ei~Id~~~----F~F~~~PY 63 (66)
.|.+|++ +-+.+|..|.+.. |.|...||
T Consensus 54 ~i~LPFIlV~T~~~a~I~ceiS~D~~~~~F~Fn~~pF 90 (142)
T PF08781_consen 54 GIQLPFILVNTSKKAVIECEISEDKSEYHFDFNSTPF 90 (142)
T ss_dssp EEESS-EEEEEESS--EEEEE-TTSSEEEEEESS--E
T ss_pred eeecCEEEEEecCCcEEEEEEcCCccEEEEEcCCCce
Confidence 5778888 5566777777775 77777776
No 43
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=39.66 E-value=28 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=14.0
Q ss_pred EEEeeeEEEeecCCeEEEEEEccc
Q psy10589 18 IMLTPMFELLQSEEDVTIIIKAPY 41 (66)
Q Consensus 18 ~MITP~F~itQDdefV~I~I~~P~ 41 (66)
..++|.|+++++++..+.+|++|-
T Consensus 18 ~~~~P~~~~~~~~~~~~c~v~LP~ 41 (90)
T PF03368_consen 18 TNLKPEFEIEKIGSGFICTVILPI 41 (90)
T ss_dssp --SS-EEEEEE--G-EEEEEE--T
T ss_pred ccCCceEEEEEcCCcEEEEEECCC
Confidence 457899999999987777999994
No 44
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=37.35 E-value=90 Score=19.90 Aligned_cols=28 Identities=4% Similarity=0.019 Sum_probs=21.1
Q ss_pred eecCCeEEEEEEcccccccceEEEEeCC
Q psy10589 27 LQSEEDVTIIIKAPYANIADTEVYVEDT 54 (66)
Q Consensus 27 tQDdefV~I~I~~P~ikas~~Ei~Id~~ 54 (66)
+.+.++++|.+.+.-++++.+.|.....
T Consensus 45 ~~npNYLFv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 45 TDNPNYLFVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp -SSTTEEEEEEEE-T--SEEEEEEEEET
T ss_pred cCCCCEEEEEEecCCCCCcEEEEEEEcC
Confidence 4567999999999988999999988766
No 45
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=33.50 E-value=51 Score=20.84 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=16.7
Q ss_pred EEEEEcccccccceEEEEeC-------CEEEEEecC
Q psy10589 34 TIIIKAPYANIADTEVYVED-------TDFRFSSSP 62 (66)
Q Consensus 34 ~I~I~~P~ikas~~Ei~Id~-------~~F~F~~~P 62 (66)
.|++++| .|+.+++|| ....|...|
T Consensus 4 ~itv~vP----adAkl~v~G~~t~~~G~~R~F~T~~ 35 (75)
T TIGR03000 4 TITVTLP----ADAKLKVDGKETNGTGTVRTFTTPP 35 (75)
T ss_pred EEEEEeC----CCCEEEECCeEcccCccEEEEECCC
Confidence 4788888 566666665 467776655
No 46
>PF10986 DUF2796: Protein of unknown function (DUF2796); InterPro: IPR021253 This bacterial family of proteins has no known function.
Probab=33.12 E-value=65 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.6
Q ss_pred eEEEeecCCeEEEEEEcccccccceE
Q psy10589 23 MFELLQSEEDVTIIIKAPYANIADTE 48 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P~ikas~~E 48 (66)
++.|-||++-|.|.+..|-.++=|.|
T Consensus 10 el~ia~dg~~l~iel~sP~~dlvGFE 35 (168)
T PF10986_consen 10 ELNIAQDGNTLLIELESPGADLVGFE 35 (168)
T ss_pred EEEEEEcCCEEEEEEECCcccccccc
Confidence 46799999999999999999877665
No 47
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=32.88 E-value=75 Score=19.31 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=25.4
Q ss_pred eEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEe-cCc
Q psy10589 23 MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-SPY 63 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~-~PY 63 (66)
+...+.+.+..+..+........+.... ..-.++|.| .||
T Consensus 82 ~L~f~dePd~yy~a~~~~~~~~~~~~~~-~~~titF~c~dP~ 122 (124)
T TIGR01633 82 PLIFSDEPDKTYYARVDEEIDLDEDTTF-GKGTLNFICPDPY 122 (124)
T ss_pred ceEeccCCCcEEEEEEcCccCHHHhhcc-cEEEEEEEecCCc
Confidence 4567777787777666554444433222 333899999 997
No 48
>KOG1309|consensus
Probab=30.32 E-value=1.2e+02 Score=22.51 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=28.7
Q ss_pred eeEEEeecCCeEEEEEEcccccccceEEEEeCCEE
Q psy10589 22 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDF 56 (66)
Q Consensus 22 P~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F 56 (66)
+|.+--|.+..|+|+|.++.+.-.++.+.+.++..
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l 38 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTL 38 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceE
Confidence 45677899999999999999988888888876554
No 49
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=30.13 E-value=1e+02 Score=22.26 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=27.4
Q ss_pred eeeEEEeecCCe---------EEEEE-Eccc---ccccceEEEEeC-CEEEEEecCccc
Q psy10589 21 TPMFELLQSEED---------VTIII-KAPY---ANIADTEVYVED-TDFRFSSSPYYL 65 (66)
Q Consensus 21 TP~F~itQDdef---------V~I~I-~~P~---ikas~~Ei~Id~-~~F~F~~~PYyL 65 (66)
..-|.+.||..| =.+.+ .=++ ......++.|.| +.-.|-..|||.
T Consensus 58 ~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dti~v~i~G~t~~d~eVtPY~~ 116 (222)
T PF12866_consen 58 PQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDTIEVDIKGNTTQDFEVTPYLR 116 (222)
T ss_dssp SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE--EEEEESSCEEEEEEE-BSEE
T ss_pred CcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCccEEEEecCceEEeEEeeeeEE
Confidence 346788888887 22333 3444 577777888886 678888888873
No 50
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=29.94 E-value=57 Score=19.95 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.0
Q ss_pred cCCeEEEEEEcccccccceEEEEeCCE
Q psy10589 29 SEEDVTIIIKAPYANIADTEVYVEDTD 55 (66)
Q Consensus 29 DdefV~I~I~~P~ikas~~Ei~Id~~~ 55 (66)
.++++-..+..||-..-|+|+.+|.+.
T Consensus 63 ~~~~~~~~v~tp~gy~iD~E~~lD~~~ 89 (93)
T PF08368_consen 63 GENYFRSNVITPYGYTIDFEIVLDKNG 89 (93)
T ss_pred CccceEEccccCCCceEEEEEEECCCC
Confidence 468899999999999999999999874
No 51
>cd08759 Type_III_cohesin_like Cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. Two specific calcium-dependent interactions between cohesin and dockerin appear to be essential for cellulosome assembly, type I and type II. This subfamily represents type III cohesins and closely related domains.
Probab=28.50 E-value=72 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=31.8
Q ss_pred eeEEEeeeEEEeecCCeEEEEEEcc---cccccceEEEEeCCEEEEE
Q psy10589 16 AVIMLTPMFELLQSEEDVTIIIKAP---YANIADTEVYVEDTDFRFS 59 (66)
Q Consensus 16 ~~~MITP~F~itQDdefV~I~I~~P---~ikas~~Ei~Id~~~F~F~ 59 (66)
|.++|+|.=.--.-++-|.|.++.. .+++-++.+..|...|.|-
T Consensus 1 G~l~l~~~k~~~~aGetvti~vkg~~l~~VnA~~~~l~yD~~~le~V 47 (160)
T cd08759 1 GTLSLVPSKTTVKAGETITIDLYGQGLKNVNALGAHIPFDNSKLELV 47 (160)
T ss_pred CceEEeccccccCCCCEEEEEEEecccceeeeeeeEEecChHHcEEE
Confidence 3466666655456678899999854 5588888888887777664
No 52
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=27.74 E-value=1.6e+02 Score=18.40 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=26.7
Q ss_pred ccceeEEEeeeEEEeecCCeEEEEEEcccccccceEEEEe
Q psy10589 13 EDQAVIMLTPMFELLQSEEDVTIIIKAPYANIADTEVYVE 52 (66)
Q Consensus 13 ~~~~~~MITP~F~itQDdefV~I~I~~P~ikas~~Ei~Id 52 (66)
+.+.+.+++|.|..++.+-.|...-+..-...+.+.+++.
T Consensus 55 ~~~~A~L~SP~~~~~~~~~Cl~F~y~~~g~~~g~L~V~v~ 94 (157)
T cd06263 55 EGQKARLLSPLLPPPRSSHCLSFWYHMYGSGVGTLNVYVR 94 (157)
T ss_pred CCCEEEEEcccCcCCCCCeEEEEEEEecCCCCCeEEEEEE
Confidence 5667899999999985444455544444444666666665
No 53
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.02 E-value=92 Score=20.17 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.0
Q ss_pred eEEEeecCCeEEEEEEccc
Q psy10589 23 MFELLQSEEDVTIIIKAPY 41 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P~ 41 (66)
+-++++|++-|.+.|++-=
T Consensus 36 rv~l~~~~~rI~l~I~A~D 54 (82)
T COG2892 36 RVKLERDGNRIVLEIRAED 54 (82)
T ss_pred eeEEEecCCEEEEEEEecc
Confidence 4678999999999999743
No 54
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=26.10 E-value=33 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=13.2
Q ss_pred ccceEEEEeCCEEEEEecCcc
Q psy10589 44 IADTEVYVEDTDFRFSSSPYY 64 (66)
Q Consensus 44 as~~Ei~Id~~~F~F~~~PYy 64 (66)
+++..|.=.=..|+|||+|.+
T Consensus 9 vt~~ti~dAYv~FilyCNP~v 29 (175)
T PF09441_consen 9 VTDETIDDAYVAFILYCNPAV 29 (175)
T ss_pred CCccchhhhhheeeeecCCCC
Confidence 333333333357999999986
No 55
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=25.86 E-value=66 Score=19.45 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=12.0
Q ss_pred EEEEcccccccceEEEEeCC
Q psy10589 35 IIIKAPYANIADTEVYVEDT 54 (66)
Q Consensus 35 I~I~~P~ikas~~Ei~Id~~ 54 (66)
|+|..|.++.|+.++.+++.
T Consensus 2 i~v~ppdIn~S~~~~~~~~~ 21 (90)
T PF14579_consen 2 IKVLPPDINKSDADFTVEDK 21 (90)
T ss_dssp -EEE---TTT-BSS-EEETT
T ss_pred CEEeCCeecccCCCeEEECC
Confidence 57889999999999999883
No 56
>PF12135 Sialidase_penC: Sialidase enzyme penultimate C terminal domain; InterPro: IPR021984 This domain is found in bacteria and eukaryotes, and is about 30 amino acids in length. The protein from which this domain is found is a sialidase enzyme which is used by virulent bacteria as a toxin. It is the penultimate C-terminal domain. ; PDB: 2VO8_A.
Probab=25.26 E-value=65 Score=16.43 Aligned_cols=12 Identities=42% Similarity=0.183 Sum_probs=8.4
Q ss_pred eeeEEEeecCCe
Q psy10589 21 TPMFELLQSEED 32 (66)
Q Consensus 21 TP~F~itQDdef 32 (66)
+|.+..+||+|-
T Consensus 8 ~~e~~~~~n~EI 19 (25)
T PF12135_consen 8 IPEQEGSQNEEI 19 (25)
T ss_dssp EEEEEEE--TTT
T ss_pred chhheeeccccc
Confidence 789999999873
No 57
>PF14651 Lipocalin_7: Lipocalin / cytosolic fatty-acid binding protein family; PDB: 2F73_A 3B2L_A 3B2J_A 3STN_A 3STK_A 3STM_X 3VG6_A 3VG4_A 3VG5_A 3B2K_A ....
Probab=25.21 E-value=1.1e+02 Score=20.44 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.0
Q ss_pred EeeeEEEeecCCeEEEEEEcccc
Q psy10589 20 LTPMFELLQSEEDVTIIIKAPYA 42 (66)
Q Consensus 20 ITP~F~itQDdefV~I~I~~P~i 42 (66)
+.|..+|+||.+...++...|-.
T Consensus 35 ~k~v~Ei~q~Gd~ft~t~~~~gg 57 (128)
T PF14651_consen 35 AKPVTEISQNGDDFTWTTTTPGG 57 (128)
T ss_dssp S-EEEEEEEETTEEEEEEEETTT
T ss_pred CCceEEEEEeCCeEEEEEEecCC
Confidence 46889999999998888766644
No 58
>PHA02966 hypothetical protein; Provisional
Probab=24.91 E-value=76 Score=19.80 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.4
Q ss_pred ccceeEEEeeeEEEeecCCe
Q psy10589 13 EDQAVIMLTPMFELLQSEED 32 (66)
Q Consensus 13 ~~~~~~MITP~F~itQDdef 32 (66)
.|-.+=.++|..++.||++.
T Consensus 38 adinikli~p~isid~d~ge 57 (67)
T PHA02966 38 ADINIKLIQPNISIDQDDGE 57 (67)
T ss_pred cceeeEEecCcceeeccCCc
Confidence 45667789999999999953
No 59
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=24.23 E-value=1.3e+02 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=23.8
Q ss_pred EEEee---eEEEee-cCCeEEEEEEcccccc-cceEEEEeCCEEEEEec
Q psy10589 18 IMLTP---MFELLQ-SEEDVTIIIKAPYANI-ADTEVYVEDTDFRFSSS 61 (66)
Q Consensus 18 ~MITP---~F~itQ-DdefV~I~I~~P~ika-s~~Ei~Id~~~F~F~~~ 61 (66)
+.|-| .|++.+ |++.|. ||+||-+. --.-+.++++.++|++.
T Consensus 126 v~IRP~~l~f~~~~~~~~tv~--I~VP~~~~G~rfSVEf~~dl~t~~~d 172 (582)
T PF03718_consen 126 VVIRPTSLNFEKKLVDDDTVV--IRVPYSPTGYRFSVEFAPDLYTYYSD 172 (582)
T ss_dssp EEEESCCC--EEEE-CTTEEE--EEE---TT-EEEEEEEGGGEEEECCT
T ss_pred eEEeeccccceEEEcCCCeEE--EEeccCCCCcEEEEEeCccceeeccc
Confidence 44555 599999 777766 88998732 23345566777777653
No 60
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=23.68 E-value=1.8e+02 Score=19.72 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=25.9
Q ss_pred EEEeeeEEEeecCCeEEEEEEccccc---ccceEEEE
Q psy10589 18 IMLTPMFELLQSEEDVTIIIKAPYAN---IADTEVYV 51 (66)
Q Consensus 18 ~MITP~F~itQDdefV~I~I~~P~ik---as~~Ei~I 51 (66)
-..+|+|+|...++..+..|+-|... -.+.++.|
T Consensus 126 ~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I 162 (221)
T PF03803_consen 126 SCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEI 162 (221)
T ss_pred cccceEEEEEECCCceEEEEeCCcceeccccceeeee
Confidence 45799999999999999999999763 23444444
No 61
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=23.48 E-value=36 Score=22.91 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=13.4
Q ss_pred EEEeCCEEEEEecCcccC
Q psy10589 49 VYVEDTDFRFSSSPYYLR 66 (66)
Q Consensus 49 i~Id~~~F~F~~~PYyLR 66 (66)
|.|...+=.|+|+|+++|
T Consensus 31 IVV~q~DGs~~sSPFhVR 48 (110)
T PF04571_consen 31 IVVEQPDGSLKSSPFHVR 48 (110)
T ss_pred EEEecCCCCEecCccEEE
Confidence 455555557999999987
No 62
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=23.43 E-value=60 Score=23.72 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=28.7
Q ss_pred CCcceeeeeccccceeEEEeeeEEEeecCCeEE-EEEE-cccc
Q psy10589 2 LPPMFELVQSEEDQAVIMLTPMFELLQSEEDVT-IIIK-APYA 42 (66)
Q Consensus 2 ~~~~~~~~~~~~~~~~~MITP~F~itQDdefV~-I~I~-~P~i 42 (66)
+||+|.|--.++.+-.|+-|-. .+-||-|.|+ +.++ +|-.
T Consensus 78 tPPlfRlep~~~~~lRI~~~~~-~LP~DRESlFwlnv~~IPp~ 119 (237)
T PRK15224 78 MPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPE 119 (237)
T ss_pred CCCeEEECCCCceEEEEEECCC-CCCCceeEEEEEEEEEcCCC
Confidence 6999999888888877888743 5677777764 5555 5653
No 63
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.22 E-value=54 Score=18.44 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.2
Q ss_pred cccceEEEEeCCEE
Q psy10589 43 NIADTEVYVEDTDF 56 (66)
Q Consensus 43 kas~~Ei~Id~~~F 56 (66)
+.++++++|||...
T Consensus 9 ~p~gA~V~vdg~~~ 22 (71)
T PF08308_consen 9 NPSGAEVYVDGKYI 22 (71)
T ss_pred ECCCCEEEECCEEe
Confidence 67899999999543
No 64
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=22.64 E-value=1.8e+02 Score=17.16 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=16.8
Q ss_pred eeEEEeeeEEEeecC----CeEEEEEEcc
Q psy10589 16 AVIMLTPMFELLQSE----EDVTIIIKAP 40 (66)
Q Consensus 16 ~~~MITP~F~itQDd----efV~I~I~~P 40 (66)
-....||.|-++-++ ..+.+.+|-+
T Consensus 29 ~~~~yTpDFlv~~~~g~~~~~~~ieVK~~ 57 (88)
T PF08722_consen 29 VPIVYTPDFLVTYRDGNGKKPVAIEVKPS 57 (88)
T ss_dssp EE---EEEEEEEESSS--SSEEEEEE--G
T ss_pred CccEEeccEEEEEccCCcceEEEEEEccH
Confidence 346789999999988 7888888854
No 65
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=22.13 E-value=1.5e+02 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=18.4
Q ss_pred eeccccceeEEEeeeEEEeecCCeEEEE
Q psy10589 9 VQSEEDQAVIMLTPMFELLQSEEDVTII 36 (66)
Q Consensus 9 ~~~~~~~~~~MITP~F~itQDdefV~I~ 36 (66)
|......|+|-|.|.+-++|+++.+++.
T Consensus 18 vD~PGGgGKvPl~P~Yli~~~~~~~vlr 45 (127)
T PF12544_consen 18 VDAPGGGGKVPLMPNYLISQSGDKVVLR 45 (127)
T ss_dssp EEETTTTEEEE-----EEEEESSEEEEE
T ss_pred EECCCCCCCcccCCceEEecCCCEEEEE
Confidence 3445568999999999999999998765
No 66
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=21.42 E-value=1.3e+02 Score=20.68 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=22.8
Q ss_pred eeeEEEeec---CCeEEEEEEc--ccc----cccceEEEEe
Q psy10589 21 TPMFELLQS---EEDVTIIIKA--PYA----NIADTEVYVE 52 (66)
Q Consensus 21 TP~F~itQD---defV~I~I~~--P~i----kas~~Ei~Id 52 (66)
||++.|..+ +++.+|.+++ ||- |+-+-|+.-+
T Consensus 58 ~P~y~i~~~~~~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s 98 (125)
T PF09732_consen 58 TPRYRIEPDEDNPDFCILRFHAGPPYEDIAFKIVNREWDYS 98 (125)
T ss_pred CCcEEEEECCCCCCEEEEEEeCCCCCcCEEEEEecCeeecC
Confidence 899999865 6899999985 886 4444444433
No 67
>PF14501 HATPase_c_5: GHKL domain
Probab=21.42 E-value=1.5e+02 Score=17.50 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.5
Q ss_pred eEEEeecCCeEEEEEEcc
Q psy10589 23 MFELLQSEEDVTIIIKAP 40 (66)
Q Consensus 23 ~F~itQDdefV~I~I~~P 40 (66)
.++++++++...++|.+|
T Consensus 83 ~~~~~~~~~~f~~~i~ip 100 (100)
T PF14501_consen 83 SLSIESEDGIFTVKIVIP 100 (100)
T ss_pred EEEEEEECCEEEEEEEEC
Confidence 356778888888888776
No 68
>KOG4024|consensus
Probab=21.07 E-value=1.5e+02 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=34.0
Q ss_pred eeccccceeEEEeeeEEEeecCCeEEEEEEcccccccceEEEEeCCEEEEEecC
Q psy10589 9 VQSEEDQAVIMLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP 62 (66)
Q Consensus 9 ~~~~~~~~~~MITP~F~itQDdefV~I~I~~P~ikas~~Ei~Id~~~F~F~~~P 62 (66)
-|.+++-+.+--+|.|.++--.+-=.+..++.|....+-|=..|...+.|+..|
T Consensus 141 sq~~~~~pe~tS~P~F~VeiiKG~~~L~f~c~~~~~e~QedEy~~~~~~~~~a~ 194 (266)
T KOG4024|consen 141 SQAVAPVPEATSMPPFTVEIIKGDQRLCFHCELVPVEDQEDEYDFRVEEFYVAP 194 (266)
T ss_pred cccCCCCcccccCCCeEEEEEeCCeeEEEEeecCCcccCcccccceeeeEEeee
Confidence 456667777778999988766666666666666644433333444555666554
No 69
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.73 E-value=88 Score=18.50 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeeEEEeecC----CeEEEEEEcccccccceEEE
Q psy10589 21 TPMFELLQSE----EDVTIIIKAPYANIADTEVY 50 (66)
Q Consensus 21 TP~F~itQDd----efV~I~I~~P~ikas~~Ei~ 50 (66)
||.|+.+.+. +.|-|.+.+-.-++.++.++
T Consensus 2 sP~f~~~~~~rf~~G~v~v~~~V~~G~I~~i~i~ 35 (86)
T PF10437_consen 2 SPEFTFSKERRFPWGTVEVHLNVKNGIIKDIKIY 35 (86)
T ss_dssp S-CESEEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCcEeeeeEcCCceEEEEEEEECCEEEEEEEE
Confidence 5777776653 56777777777777777665
No 70
>smart00406 IGv Immunoglobulin V-Type.
Probab=20.36 E-value=1.6e+02 Score=15.63 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=18.3
Q ss_pred eeeEEEeecCCeEEEEEEcccccccceEEEE
Q psy10589 21 TPMFELLQSEEDVTIIIKAPYANIADTEVYV 51 (66)
Q Consensus 21 TP~F~itQDdefV~I~I~~P~ikas~~Ei~I 51 (66)
..||.++.+...=...+++..++.+|.-.|.
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEE
Confidence 3567777664333455666667776666554
No 71
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=20.35 E-value=1.3e+02 Score=17.55 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.0
Q ss_pred CeEEEEEEcccccccceEEEE
Q psy10589 31 EDVTIIIKAPYANIADTEVYV 51 (66)
Q Consensus 31 efV~I~I~~P~ikas~~Ei~I 51 (66)
|.|.|.+.+.|-..+++.+.+
T Consensus 2 E~v~v~v~i~H~~~gdL~i~L 22 (87)
T PF01483_consen 2 EHVQVSVDITHPYRGDLRITL 22 (87)
T ss_dssp EEEEEEEEEEESSGGGEEEEE
T ss_pred cEEEEEEEEEcCCcCCEEEEE
Confidence 457777777788888888776
No 72
>KOG4015|consensus
Probab=20.32 E-value=69 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.2
Q ss_pred cceeEEEeeeEEEeecCCeEEEEEEcc
Q psy10589 14 DQAVIMLTPMFELLQSEEDVTIIIKAP 40 (66)
Q Consensus 14 ~~~~~MITP~F~itQDdefV~I~I~~P 40 (66)
.+.+-++.|..+|+||.+...++-.-.
T Consensus 31 Rk~a~~~kp~~~i~~~G~~~~~~t~St 57 (133)
T KOG4015|consen 31 RKIAKLAKPVLEITQDGDKFTIKTLST 57 (133)
T ss_pred HHHHhhcCCeEEEEEcCCEEEEEEeec
Confidence 456778899999999999998876543
Done!