RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10589
(66 letters)
>gnl|CDD|114410 pfam05684, DUF819, Protein of unknown function (DUF819). This
family contains proteins of unknown function from
archaeal, bacterial and plant species.
Length = 379
Score = 28.1 bits (63), Expect = 0.22
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 2 LPPMFELVQSEEDQAVIMLTPMFELLQSEEDVTIIIKAP 40
FEL+ E+ ++L F ++ S D+ I+ AP
Sbjct: 256 FTRFFELLPGSEEIGTVLLYVFFAVIGSTADLWSILTAP 294
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain
include p23 and its Saccharomyces cerevisiae (Sc)
homolog Sba1. Both are co-chaperones for the heat shock
protein (Hsp) 90. p23 binds Hsp90 and participates in
the folding of a number of Hsp90 clients, including the
progesterone receptor. p23 also has a passive
chaperoning activity and in addition may participate in
prostaglandin synthesis. Both p23 and Sba1p can
regulate telomerase activity. This group includes
domains similar to the C-terminal CHORD-SGT1 (CS)
domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1
interacts with multiple protein complexes and has the
features of a co-chaperone. Human (h) Sgt1 interacts
with both Hsp70 and Hsp90, and has been shown to bind
Hsp90 through its CS domain. Saccharomyces cerevisiae
(Sc) Sgt1 is a subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 27.3 bits (61), Expect = 0.25
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 28 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59
Q+ ++VTI I D +V S
Sbjct: 3 QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVS 34
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.
Length = 304
Score = 26.8 bits (60), Expect = 0.78
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 25 ELLQSEEDVTIIIKAPYANIA 45
L+ + E VT++ P NIA
Sbjct: 110 ALMNAPEPVTLVAIGPLTNIA 130
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 24.7 bits (54), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 29 SEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP-YY 64
+D + K P++ + VY+E +DFR S YY
Sbjct: 606 QNDDPSAFYKVPFSRV----VYIERSDFRLKDSKDYY 638
>gnl|CDD|179139 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosphate
dehydrogenase; Reviewed.
Length = 350
Score = 24.1 bits (53), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 38 KAPYANIADTEVYVEDTDFRFSSSPYYL 65
K P A IADTE+ + +PY L
Sbjct: 145 KPPLAVIADTEI--------IAKAPYRL 164
>gnl|CDD|218154 pfam04571, Lipin_N, lipin, N-terminal conserved region.
Mutations in the lipin gene lead to fatty liver
dystrophy in mice. The protein has been shown to be
phosphorylated by the TOR Ser/Thr protein kinases in
response to insulin stimulation. The conserved region
is found at the N-terminus of the member proteins.
Length = 111
Score = 23.9 bits (52), Expect = 6.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 51 VEDTDFRFSSSPYYLR 66
VE D SP+++R
Sbjct: 33 VEQPDGSLRCSPFHVR 48
>gnl|CDD|227836 COG5549, COG5549, Predicted Zn-dependent protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 24.1 bits (52), Expect = 6.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 21 TPMFELLQSEEDVTIIIKAP 40
+P+ L+ SE V + I+ P
Sbjct: 74 SPVGYLIWSEFPVDVRIRWP 93
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA:
inosine-uridine preferring,
xanthosine-inosine-uridine-adenosine-preferring and,
uridine-cytidine preferring nucleoside hydrolases.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
These enzymes vary in their substrate specificity. This
group contains proteins similar to nucleoside hydrolases
which hydrolyze both pyrimidine and purine
ribonucleosides: the inosine-uridine preferring
nucleoside hydrolase from Crithidia fasciculata, the
inosine-uridine-xanthosine preferring nucleoside
hydrolase RihC from Escherichia coli and the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium. This group also contains proteins
similar to the pyrimidine-specific uridine-cytidine
preferring nucleoside hydrolases URH1 from Saccharomyces
cerevisiae, E. coli RihA and E. coli RihB. E. coli
RihA is equally efficient with uridine and cytidine, E.
coli RihB prefers cytidine over uridine. S. cerevisiae
URH1 prefers uridine over cytidine. .
Length = 302
Score = 24.0 bits (53), Expect = 6.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 25 ELLQSEEDVTIIIKAPYANIA 45
L S E +T++ P NIA
Sbjct: 108 TLRASPEPITLVATGPLTNIA 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.374
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,326,898
Number of extensions: 238840
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 11
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)