RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10589
         (66 letters)



>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 28.9 bits (64), Expect = 0.023
 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)

Query: 28 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59
             + V I       +  D  V  E +   FS
Sbjct: 10 DRRDYVFIEFCVE--DSKDVNVNFEKSKLTFS 39


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
          (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 25.3 bits (55), Expect = 0.50
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 28 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59
          Q   D+ + +  P   +   +V V  +     
Sbjct: 26 QDYTDLEVRVPVPKHVVKGKQVSVALSSSSIR 57


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 24.1 bits (52), Expect = 0.92
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 28 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS 59
          Q+E  V I +        D  V   + +    
Sbjct: 9  QTESQVVITLMIKNVQKNDVNVEFSEKELSAL 40


>d2j43a2 b.3.1.3 (A:112-223) Pullulanase PulA {Streptococcus
           pyogenes [TaxId: 1314]}
          Length = 112

 Score = 22.5 bits (48), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 45  ADTEVYVEDTDFRFSSSPYYL 65
             T+V+V+DTD +  ++PYY+
Sbjct: 91  NHTQVFVKDTDPKVYNNPYYI 111


>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
           nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
          Length = 327

 Score = 22.0 bits (46), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 26  LLQSEEDVTIIIKAPYANIA 45
           ++ SEE VTI +  P +N+A
Sbjct: 125 VMNSEEKVTICVTGPLSNVA 144


>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 181

 Score = 21.9 bits (46), Expect = 9.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 12  EEDQAVIMLTPMFELLQSEEDVTIIIK 38
             D  +  L P FE L   +DV  +++
Sbjct: 154 MSDTELHDLLPFFEQLSRVDDVYSVLR 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 236,467
Number of extensions: 7752
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 6
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)