BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1059
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 237/553 (42%), Gaps = 93/553 (16%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 62
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 63 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 121
+D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 122 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 181
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 182 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 239
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 240 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 298
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 299 KQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGY 357
D VGE+L+ + + V+ F A Q MV + + W +
Sbjct: 297 LVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGIF 336
Query: 358 IDTLQNTARPDLEIHL--LYFQQNDIRNMYLAT-------------------LIRGTD-- 394
T RPDL +H + F N +R+ Y T +R D
Sbjct: 337 TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFR 396
Query: 395 --------YITRLEQTEAIRLAGGTLMSLNLEA-CSQYPW-----------RSTHSWTCY 434
Y T E + + G + + A + W ++ Y
Sbjct: 397 DKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDY 456
Query: 435 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISY 494
IR T +PVGTV MG +D + + P+L+VKG+ GLRVAD SV+P + +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 495 MIGEKCADLVKTS 507
MIGE+CADL++++
Sbjct: 517 MIGERCADLIRSA 529
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 237/553 (42%), Gaps = 93/553 (16%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 62
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 63 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 121
+D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 122 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 181
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 182 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 239
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 240 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 298
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 299 KQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGY 357
D VGE+L+ + + V+ F A Q MV + + W +
Sbjct: 297 LVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGIF 336
Query: 358 IDTLQNTARPDLEIHL--LYFQQNDIRNMYLAT-------------------LIRGTD-- 394
T RPDL +H + F N +R+ Y T +R D
Sbjct: 337 TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFR 396
Query: 395 --------YITRLEQTEAIRLAGGTLMSLNLEA-CSQYPW-----------RSTHSWTCY 434
Y T E + + G + + A + W ++ Y
Sbjct: 397 DKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDY 456
Query: 435 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISY 494
IR T +PVGTV MG +D + + P+L+VKG+ GLRVAD SV+P + +
Sbjct: 457 IRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 495 MIGEKCADLVKTS 507
MIGE+CADL++++
Sbjct: 517 MIGERCADLIRSA 529
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 236/553 (42%), Gaps = 93/553 (16%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 62
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 63 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 121
+D Y EP + +R+AR K+ +GG S+ + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGAT 122
Query: 122 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 181
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 182 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 239
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 240 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 298
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 299 KQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGY 357
D VGE+L+ + + V+ F A Q MV + + W +
Sbjct: 297 LVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGIF 336
Query: 358 IDTLQNTARPDLEIHL--LYFQQNDIRNMYLAT-------------------LIRGTD-- 394
T RPDL +H + F N +R+ Y T +R D
Sbjct: 337 TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFR 396
Query: 395 --------YITRLEQTEAIRLAGGTLMSLNLEA-CSQYPW-----------RSTHSWTCY 434
Y T E + + G + + A + W ++ Y
Sbjct: 397 DKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDY 456
Query: 435 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISY 494
IR T +PVGTV MG +D + + P+L+VKG+ GLRVAD SV+P + +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 495 MIGEKCADLVKTS 507
MIGE+CADL++++
Sbjct: 517 MIGERCADLIRSA 529
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 156/337 (46%), Gaps = 32/337 (9%)
Query: 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI--PGMSSVLSLSEFDHAYL 69
DI+IVG +AG +LA RLSE +VLLIEA G+ P I P L +D Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 128
E A G G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TE----AQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 129 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 188
L F ED+ G LP+ L ++ + + R E A LG P +
Sbjct: 134 LPVFQAIEDHPLGGDGIHG----KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEGH 188
Query: 189 NDRYVDVGFAELPGMT------RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 242
N E+ G+T R G R +AADA+LT R NL +L S+V ++ +
Sbjct: 189 NS-------GEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEG 241
Query: 243 QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 302
V + +E V +G + V A+ +++L AGA+ + LL+ SGIGP LD + D+
Sbjct: 242 NQVRS-LEVVGRQG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDM 298
Query: 303 -RVGENLKLNAQFTGPVMAFSAPL--KRTVYSQEMVF 336
+G NL+ + G + A P+ R +S+ M +
Sbjct: 299 PDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAY 335
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 434 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 483
+I T +P GT MG DP+AVV +L++K + L V D S++PN
Sbjct: 452 FIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPN 499
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 36/322 (11%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA--------GGDTPIHSRIPGMSSVLSLS 62
FD ++VGA AG V+A RL+E + VL++EA G + P+ + PG+ + S
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLA--PGL---VPNS 57
Query: 63 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYN 121
FD Y + A G I G+ LGGSS+V ++ RG++ D++ +A + G
Sbjct: 58 IFDWNY----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDE 113
Query: 122 GWGYDETLKYFVKSE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIF 173
GW +D ++ K+E D + AVHGT G + + L F ++ +
Sbjct: 114 GWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATT 173
Query: 174 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 233
+ ++E + DM + +G + G R S++ AYL P A R NL VL +
Sbjct: 174 QEQSEEFFF--NPDMGTGH-PLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINA 229
Query: 234 KVTKVI----INDQNVATGVEYVNSKG-ETVRVTANKEVILTAGAIANAQLLLLSGIGPK 288
+VTK++ N VEY +G T V A KEV+L+AG++ LL LSGIG +
Sbjct: 230 QVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDE 289
Query: 289 AHLDEVKIP-VKQDLRVGENLK 309
L V I + + VG NL
Sbjct: 290 NDLSSVGIDTIVNNPSVGRNLS 311
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 433 CYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAI 492
YIR T +PVGT M VV PDLKVKG+ GLR+ D S+LP A +
Sbjct: 491 SYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGP 550
Query: 493 SYMIGEKCADLVK 505
Y++G++ ADL+K
Sbjct: 551 IYLVGKQGADLIK 563
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 143/326 (43%), Gaps = 30/326 (9%)
Query: 3 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI---PGMSSVL 59
P +G +D II G G +A +L+E +KVL+IE G I P +
Sbjct: 17 PSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQI 76
Query: 60 SLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-L 118
+ D YL P + N I AGKGLGGS+ + + R +++ K
Sbjct: 77 FGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVF 130
Query: 119 GYNGWGYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKE--NNII 169
G GW +D +Y K+E R+ + A HGT G + G N + + I+
Sbjct: 131 GMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIM 190
Query: 170 REIFETSAQELGYPCPKDM---NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTN 226
+ + T LG P +D + R V + + + +R AA A+L P +R+N
Sbjct: 191 KALMNT-VSALGVPVQQDFLCGHPRGVSM---IMNNLDENQVRVDAARAWLLPNY-QRSN 245
Query: 227 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 283
L +L V KV+ A GV + +K V A EV+L AG+ + +L S
Sbjct: 246 LEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYS 305
Query: 284 GIGPKAHLDEVKIPVKQDLRVGENLK 309
GIG K+ LD+ + DL VG N++
Sbjct: 306 GIGLKSVLDQANVTQLLDLPVGINMQ 331
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 144/326 (44%), Gaps = 29/326 (8%)
Query: 3 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG----DTPIHSRIPGMSSV 58
P SG D II G G A RL+E ++ VL+IE+G PI + +
Sbjct: 12 PKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI 71
Query: 59 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK- 117
S DHAY + L N I +G GLGGS+ V + R +++
Sbjct: 72 FG-SSVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETV 125
Query: 118 LGYNGWGYDETLKYFVKSEDYRSVIYNE-------SKAVHGTQGYLPVGLFKNKEN-NII 169
G GW +D Y +++E R+ + + + HG G + G ++ + I
Sbjct: 126 FGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPI 185
Query: 170 REIFETSAQELGYPCPKDMN--DRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTN 226
+ ++ ++ G P KD D + G + P + +R AA +L P +R N
Sbjct: 186 VKALMSAVEDRGVPTKKDFGCGDPH---GVSMFPNTLHEDQVRSDAAREWLLPNY-QRPN 241
Query: 227 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 283
L VL V KV+++ A GVE+ KG T V A EV+L AG+ + +L S
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 301
Query: 284 GIGPKAHLDEVKIPVKQDLRVGENLK 309
GIG K+ L+ + I DL VG NL+
Sbjct: 302 GIGMKSILEPLGIDTVVDLPVGLNLQ 327
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 32/318 (10%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSL-- 61
G FD +IVG AG +A RL+E ++ VL++EAG P IP + SS + L
Sbjct: 3 DGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRN 60
Query: 62 SEFDHAY---LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 118
S++D AY + + + N R GK LGGSS++ + G ++ + +
Sbjct: 61 SKYDWAYKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEF 115
Query: 119 GYNGWGYDETLKYFVKSEDYRS--VIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFET 175
G W +D + Y KS Y +Y+ G G +P+ + E RE
Sbjct: 116 GGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTK 175
Query: 176 SAQELGYPCPKDMNDRYVDVGFAELPGMTRYG---LRFSAADAYLTPIAGKRTNLYVLKR 232
+ + +G P +++ D E+ G+T R + ++L + N+ ++
Sbjct: 176 AWKSMGQPLIENIYD-------GEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPE 226
Query: 233 SKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL 291
++IIN+ + GV V + G + A++EVIL+ G +LL+LSGIGP L
Sbjct: 227 VHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTREL 286
Query: 292 DEVKIPVKQDLR-VGENL 308
I D R VG+NL
Sbjct: 287 SRHGINTIVDSRHVGQNL 304
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 421 SQYPWR----STHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVA 476
S+YPW S + T +P GT + D VV P LKV GIK LRVA
Sbjct: 483 SEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVA 541
Query: 477 DISVLPNAIITQSDAISYMIGEKCADLVKTSY 508
D SV+P + Y +GEKCAD++K +
Sbjct: 542 DASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 124/303 (40%), Gaps = 60/303 (19%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 69
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYE--------NFAKLGYN 121
+ G+ N R G+ LGG+S + +Y R + Y + Y
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYE 139
Query: 122 GWGYDETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQE 179
W ++T+ Y S+ ++SV VH G+ L + I F+
Sbjct: 140 -W-VEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNKG-- 192
Query: 180 LGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 239
TR+ AAD L G NL V + V K+I
Sbjct: 193 ------------------------TRH-----AADELLN--KGNSNNLRVGVHASVEKII 221
Query: 240 INDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 295
++ ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L +
Sbjct: 222 FSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLN 281
Query: 296 IPV 298
IPV
Sbjct: 282 IPV 284
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 124/303 (40%), Gaps = 60/303 (19%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 69
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYE--------NFAKLGYN 121
+ G+ N R G+ LGG+S + +Y R + Y + Y
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYE 139
Query: 122 GWGYDETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQE 179
W ++T+ Y S+ ++SV VH G+ L + I F+
Sbjct: 140 -W-VEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNKG-- 192
Query: 180 LGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 239
TR+ AAD L G NL V + V K+I
Sbjct: 193 ------------------------TRH-----AADELLN--KGNSNNLRVGVHASVEKII 221
Query: 240 INDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 295
++ ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L +
Sbjct: 222 FSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLN 281
Query: 296 IPV 298
IPV
Sbjct: 282 IPV 284
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 125/534 (23%), Positives = 205/534 (38%), Gaps = 100/534 (18%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 69
+D +IVG +GC LA LSE KVL++E G T + + + +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQT 84
Query: 70 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 129
+G G+ + R G+ LGG+S + +Y R + + F+ G W D
Sbjct: 85 PVERFVSGDGIDDVR-----GRVLGGTSMINAGVYARANT---KIFSASGIE-WDMDLVN 135
Query: 130 KYFVKSEDYRSVIYNESKAVHGT---QGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 186
+ + ED +++Y K + +L G+ + G+
Sbjct: 136 QTYDWVED--TIVYKPDKQAWQSLTKTAFLEAGVLPDN----------------GFSLDH 177
Query: 187 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-- 244
+ R F TR+ A+D L G NL V + V K+I + +
Sbjct: 178 EAGTRLTGSTFDN--NGTRH-----ASDELLN--KGDPNNLRVAVHASVEKIIFSSNSSG 228
Query: 245 -VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVK-Q 300
A GV Y +S G V EVI++AG I + QLLLLSG+GP+++L + IPV
Sbjct: 229 VTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLS 288
Query: 301 DLRVGENLKLNAQ-------------FTGPVMAFSAPLKRTVYSQEMV----FKYLVNRI 343
VG+ L N + T V+ ++ + +S F + N
Sbjct: 289 HPYVGQFLHDNPRNFINILPPNPIEPSTVTVLGITSNFYQCSFSSLPFSIPPFAFFPNPT 348
Query: 344 GPLSNAGLWSFT----GYIDTLQNTARPDLEIHLLYFQQNDIRNMY-----LATLIRGTD 394
PL N+ F G + T D ++ + N N Y LA + G
Sbjct: 349 YPLPNSTFAHFVNKVPGPLSYGSITLNSDSDVRV---APNVKFNYYSNSTDLAHCVSGMK 405
Query: 395 YITRLEQTEAIR---------LAGGTLMSLNLEACSQYPWRSTH--SWTCYIRHLTTTTS 443
I L ++A++ + G ++ + L P T ++ + R +
Sbjct: 406 KIGELLSSDALKPYKVEDLPGIDGFDILGIPL------PENQTDDAAFETFCREAVASYW 459
Query: 444 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIG 497
+ G ++G V+ D +V GI LRV D S P + + M+G
Sbjct: 460 HYHGGCLVGE------VLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLG 507
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 133/339 (39%), Gaps = 52/339 (15%)
Query: 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSE 63
S +D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 64 FDHAYLAEPSQFAGLGV--RNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 120
FD L E S F I + AG +GG ++V LY D+ + +G+
Sbjct: 63 FDIPGLFE-SLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 119
Query: 121 NGW----GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 176
+ W Y L + S D+ S Q YL + N++ ++ +
Sbjct: 120 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 162
Query: 177 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 236
Q D N Y D F G R YL A R N V+
Sbjct: 163 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 220
Query: 237 KVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 293
V+ N V T + G + VT VIL+AGA +++L SGIGP +
Sbjct: 221 NVVRNGSQILGVQTNDPTLGPNG-FIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 294 VK--------IPVKQ---DLRVG----ENLKLNAQFTGP 317
V+ +P + +L VG +N +N FT P
Sbjct: 280 VQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHP 318
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 118/302 (39%), Gaps = 45/302 (14%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHA 67
+D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++FD
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 59
Query: 68 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 120
P F L + I + AG +GG ++V LY D+ + +G+
Sbjct: 60 ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 114
Query: 121 NGW----GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 176
+ W Y L + S D+ S Q YL + N++ ++ +
Sbjct: 115 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 157
Query: 177 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 236
Q D N Y D F G R YL A R N V+
Sbjct: 158 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 215
Query: 237 KVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 293
V+ N V T + G + VT VIL+AGA +++L SGIGP +
Sbjct: 216 NVVRNGSQILGVQTNDPTLGPNG-FIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 274
Query: 294 VK 295
V+
Sbjct: 275 VQ 276
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVD 59
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLSLSEFDHAY 68
+++VGA +G A L V V+L EAG G S +PG+S+ + E+ A
Sbjct: 394 VLVVGAGPSGLEAARALG-VRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV 452
Query: 69 LAE 71
LAE
Sbjct: 453 LAE 455
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+I+VGA +G A RLSE +L++EA
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEA 42
+I+VGA +G A RLSE +L++EA
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEA 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,765,251
Number of Sequences: 62578
Number of extensions: 616435
Number of successful extensions: 1830
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 48
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)