Query psy1059
Match_columns 512
No_of_seqs 232 out of 2137
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 22:15:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 4.6E-90 1E-94 680.0 40.3 497 7-510 54-618 (623)
2 PRK02106 choline dehydrogenase 100.0 2.9E-76 6.4E-81 614.7 46.0 479 8-510 3-537 (560)
3 TIGR01810 betA choline dehydro 100.0 1.1E-75 2.3E-80 607.4 46.5 476 12-509 1-531 (532)
4 COG2303 BetA Choline dehydroge 100.0 4.9E-70 1.1E-74 559.0 34.9 481 6-507 3-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 5.2E-65 1.1E-69 524.4 39.9 447 8-508 53-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 2E-49 4.3E-54 400.1 32.5 434 11-509 1-544 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 3.7E-49 8E-54 381.1 21.6 290 11-313 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 99.9 3.2E-27 6.9E-32 202.3 10.6 129 364-500 15-144 (144)
9 PRK12835 3-ketosteroid-delta-1 99.6 1E-13 2.3E-18 144.8 19.4 64 217-282 219-283 (584)
10 PRK07121 hypothetical protein; 99.6 9.5E-14 2.1E-18 143.3 18.4 63 217-281 183-246 (492)
11 PRK12845 3-ketosteroid-delta-1 99.6 1.2E-13 2.6E-18 143.4 18.8 57 223-281 228-285 (564)
12 PRK12837 3-ketosteroid-delta-1 99.5 1.9E-13 4.2E-18 141.2 18.5 64 216-282 179-243 (513)
13 PF00890 FAD_binding_2: FAD bi 99.5 1.3E-13 2.8E-18 139.9 16.4 61 217-281 147-208 (417)
14 PRK08274 tricarballylate dehyd 99.5 1.9E-13 4.2E-18 140.4 17.8 67 217-286 137-203 (466)
15 PRK06481 fumarate reductase fl 99.5 2.1E-13 4.5E-18 140.8 18.0 58 223-282 201-259 (506)
16 PRK12844 3-ketosteroid-delta-1 99.5 1.9E-13 4.1E-18 142.3 16.4 62 217-281 214-276 (557)
17 PRK06452 sdhA succinate dehydr 99.5 9.2E-13 2E-17 137.5 17.4 51 223-275 147-198 (566)
18 PLN00128 Succinate dehydrogena 99.5 1.2E-12 2.5E-17 137.7 17.6 53 223-276 198-251 (635)
19 PRK09078 sdhA succinate dehydr 99.5 1.3E-12 2.9E-17 137.0 17.6 53 223-276 160-213 (598)
20 PRK11101 glpA sn-glycerol-3-ph 99.5 1.2E-12 2.6E-17 136.2 17.1 60 223-285 160-220 (546)
21 PRK06175 L-aspartate oxidase; 99.5 1.5E-12 3.2E-17 131.6 16.9 51 223-276 140-190 (433)
22 PRK08958 sdhA succinate dehydr 99.5 1.8E-12 3.8E-17 135.7 17.5 53 223-276 154-207 (588)
23 TIGR01813 flavo_cyto_c flavocy 99.4 2.1E-12 4.6E-17 131.7 16.7 63 216-280 135-198 (439)
24 PTZ00139 Succinate dehydrogena 99.4 1.9E-12 4.2E-17 136.1 16.5 53 223-276 177-230 (617)
25 PF01266 DAO: FAD dependent ox 99.4 4.5E-13 9.7E-18 133.1 10.9 60 217-285 153-212 (358)
26 PRK07573 sdhA succinate dehydr 99.4 4.4E-12 9.5E-17 133.8 18.3 52 223-276 181-233 (640)
27 PRK07843 3-ketosteroid-delta-1 99.4 4E-12 8.6E-17 132.6 17.2 63 217-282 214-276 (557)
28 PRK06263 sdhA succinate dehydr 99.4 4.9E-12 1.1E-16 131.9 17.8 58 217-276 140-198 (543)
29 PRK12839 hypothetical protein; 99.4 8.3E-12 1.8E-16 130.1 18.5 66 440-510 500-570 (572)
30 PRK12834 putative FAD-binding 99.4 7.7E-12 1.7E-16 130.6 17.2 56 224-281 164-234 (549)
31 PRK08641 sdhA succinate dehydr 99.4 1.3E-11 2.7E-16 129.5 18.3 50 226-276 151-201 (589)
32 PRK05945 sdhA succinate dehydr 99.4 8.5E-12 1.8E-16 130.8 16.8 57 217-276 141-198 (575)
33 PRK07804 L-aspartate oxidase; 99.4 1.3E-11 2.9E-16 128.2 17.8 59 216-276 149-211 (541)
34 PLN02815 L-aspartate oxidase 99.4 1.1E-11 2.4E-16 129.2 16.9 53 223-276 167-223 (594)
35 PRK07057 sdhA succinate dehydr 99.4 1.4E-11 3.1E-16 129.1 17.8 53 223-276 159-212 (591)
36 PRK12842 putative succinate de 99.4 2E-11 4.3E-16 128.2 18.8 56 223-280 225-280 (574)
37 COG2081 Predicted flavoprotein 99.4 1.9E-12 4E-17 122.8 9.7 91 170-279 81-171 (408)
38 COG0579 Predicted dehydrogenas 99.4 7.6E-12 1.6E-16 122.7 14.2 65 215-287 158-222 (429)
39 PRK08275 putative oxidoreducta 99.4 1.4E-11 3.1E-16 128.7 16.8 58 216-275 142-200 (554)
40 PRK06854 adenylylsulfate reduc 99.4 2.2E-11 4.8E-16 128.0 18.1 50 224-275 145-195 (608)
41 PRK07395 L-aspartate oxidase; 99.4 1.2E-11 2.6E-16 128.4 15.6 52 223-276 146-198 (553)
42 PRK12843 putative FAD-binding 99.4 2.9E-11 6.4E-16 126.7 18.7 62 217-281 227-289 (578)
43 TIGR01176 fum_red_Fp fumarate 99.4 2E-11 4.4E-16 127.4 17.2 52 223-276 144-196 (580)
44 PRK08626 fumarate reductase fl 99.4 1.7E-11 3.6E-16 129.7 16.6 52 223-276 169-221 (657)
45 PRK06134 putative FAD-binding 99.4 3.6E-11 7.7E-16 126.2 19.0 56 223-280 228-283 (581)
46 PRK09231 fumarate reductase fl 99.4 2.6E-11 5.7E-16 127.0 17.9 52 223-276 145-197 (582)
47 TIGR00551 nadB L-aspartate oxi 99.4 2.7E-11 5.8E-16 124.8 17.7 50 224-276 141-190 (488)
48 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.8E-11 3.9E-16 128.6 16.3 52 223-276 140-192 (566)
49 PTZ00306 NADH-dependent fumara 99.3 3.3E-11 7.2E-16 135.4 19.2 54 224-278 559-623 (1167)
50 PRK06069 sdhA succinate dehydr 99.3 2E-11 4.2E-16 128.2 16.2 51 223-275 149-200 (577)
51 PRK07803 sdhA succinate dehydr 99.3 2.3E-11 5E-16 128.3 16.7 48 227-276 166-214 (626)
52 PRK08071 L-aspartate oxidase; 99.3 3E-11 6.6E-16 124.7 16.5 50 225-276 142-191 (510)
53 COG0578 GlpA Glycerol-3-phosph 99.3 5.5E-12 1.2E-16 126.1 10.3 76 223-302 175-254 (532)
54 PRK09077 L-aspartate oxidase; 99.3 4.8E-11 1E-15 124.0 17.7 53 223-276 150-208 (536)
55 PRK08205 sdhA succinate dehydr 99.3 6.7E-11 1.5E-15 124.2 18.0 59 216-276 145-207 (583)
56 TIGR01811 sdhA_Bsu succinate d 99.3 4.9E-11 1.1E-15 125.2 16.8 52 224-276 145-197 (603)
57 PRK12409 D-amino acid dehydrog 99.3 6.4E-11 1.4E-15 119.9 16.7 34 11-45 2-35 (410)
58 PRK07512 L-aspartate oxidase; 99.3 7.2E-11 1.6E-15 122.0 16.0 51 223-276 148-198 (513)
59 TIGR02061 aprA adenosine phosp 99.3 1.3E-10 2.9E-15 121.2 17.9 52 223-275 137-191 (614)
60 PTZ00383 malate:quinone oxidor 99.3 1.4E-10 3.1E-15 118.0 17.4 54 225-286 228-283 (497)
61 PRK13800 putative oxidoreducta 99.3 1.4E-10 3E-15 127.6 17.7 50 224-275 155-205 (897)
62 PF03486 HI0933_like: HI0933-l 99.2 9.3E-12 2E-16 123.5 6.7 91 171-279 80-170 (409)
63 PLN02464 glycerol-3-phosphate 99.2 2.8E-10 6.1E-15 119.9 17.8 60 223-284 243-304 (627)
64 TIGR01373 soxB sarcosine oxida 99.2 1.9E-10 4.2E-15 116.3 15.3 56 223-285 194-249 (407)
65 TIGR00292 thiazole biosynthesi 99.2 1.1E-10 2.4E-15 108.6 11.9 36 9-45 20-55 (254)
66 PRK04176 ribulose-1,5-biphosph 99.2 1.3E-10 2.9E-15 108.5 12.1 36 8-44 23-58 (257)
67 TIGR03329 Phn_aa_oxid putative 99.2 1E-10 2.3E-15 119.7 12.3 38 8-45 22-60 (460)
68 PRK00711 D-amino acid dehydrog 99.2 4E-10 8.6E-15 114.4 16.4 54 223-284 212-265 (416)
69 PRK11728 hydroxyglutarate oxid 99.2 2.1E-10 4.7E-15 115.2 14.2 60 217-286 155-214 (393)
70 PLN02661 Putative thiazole syn 99.2 2.2E-10 4.9E-15 109.3 12.7 55 217-274 179-243 (357)
71 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.3E-10 2.9E-15 100.6 10.0 35 9-44 29-63 (262)
72 COG0029 NadB Aspartate oxidase 99.2 1.1E-10 2.3E-15 113.6 10.5 104 169-275 88-196 (518)
73 PRK08401 L-aspartate oxidase; 99.2 4.9E-10 1.1E-14 114.7 16.1 52 216-276 125-176 (466)
74 PF01946 Thi4: Thi4 family; PD 99.2 1.3E-10 2.9E-15 101.5 9.0 54 216-272 102-162 (230)
75 PRK05257 malate:quinone oxidor 99.2 9.9E-10 2.1E-14 112.4 16.6 38 8-45 3-41 (494)
76 COG1053 SdhA Succinate dehydro 99.2 4.3E-10 9.4E-15 115.7 13.8 101 172-275 96-202 (562)
77 TIGR01320 mal_quin_oxido malat 99.1 6.2E-10 1.3E-14 113.7 14.2 61 223-286 189-250 (483)
78 TIGR01377 soxA_mon sarcosine o 99.1 1.1E-09 2.4E-14 109.8 15.9 34 11-45 1-34 (380)
79 PRK13339 malate:quinone oxidor 99.1 3.5E-09 7.7E-14 107.5 19.3 39 7-45 3-42 (497)
80 COG3573 Predicted oxidoreducta 99.1 4.7E-10 1E-14 103.0 11.3 64 216-282 158-235 (552)
81 PRK12266 glpD glycerol-3-phosp 99.1 9.6E-10 2.1E-14 113.6 14.8 55 223-281 166-221 (508)
82 TIGR03364 HpnW_proposed FAD de 99.1 7.3E-10 1.6E-14 110.4 13.2 34 11-45 1-34 (365)
83 PF12831 FAD_oxidored: FAD dep 99.1 9.5E-11 2.1E-15 118.5 6.3 63 217-286 96-158 (428)
84 PRK11259 solA N-methyltryptoph 99.1 1.5E-09 3.2E-14 108.7 14.7 35 10-45 3-37 (376)
85 PRK13369 glycerol-3-phosphate 99.1 1.7E-09 3.6E-14 112.0 15.3 55 223-281 166-220 (502)
86 KOG4254|consensus 99.1 5.5E-09 1.2E-13 99.9 17.2 58 216-280 269-327 (561)
87 TIGR02734 crtI_fam phytoene de 99.1 6.2E-09 1.4E-13 108.2 18.4 58 217-281 225-282 (502)
88 TIGR02485 CobZ_N-term precorri 99.1 2.8E-09 6E-14 108.5 14.8 60 217-281 129-189 (432)
89 PF06039 Mqo: Malate:quinone o 99.0 1.1E-08 2.3E-13 99.6 15.9 61 223-286 193-254 (488)
90 PRK10157 putative oxidoreducta 99.0 1.7E-09 3.6E-14 109.6 10.3 36 9-45 4-39 (428)
91 PTZ00363 rab-GDP dissociation 99.0 6.6E-09 1.4E-13 104.4 14.4 40 8-48 2-41 (443)
92 KOG2820|consensus 99.0 9.2E-09 2E-13 95.0 13.6 61 216-283 158-219 (399)
93 PRK05192 tRNA uridine 5-carbox 99.0 2.9E-09 6.4E-14 109.1 11.0 46 223-275 112-157 (618)
94 KOG0042|consensus 99.0 1.5E-10 3.3E-15 112.7 1.3 82 194-281 210-292 (680)
95 PRK01747 mnmC bifunctional tRN 98.9 7.4E-09 1.6E-13 110.9 12.1 35 10-45 260-294 (662)
96 PRK10015 oxidoreductase; Provi 98.9 4.4E-09 9.5E-14 106.4 9.0 36 9-45 4-39 (429)
97 KOG1298|consensus 98.9 2.3E-09 5E-14 100.4 5.4 51 223-276 159-209 (509)
98 PRK13977 myosin-cross-reactive 98.9 6.9E-08 1.5E-12 98.2 16.2 56 219-275 234-293 (576)
99 PF01134 GIDA: Glucose inhibit 98.9 4.9E-09 1.1E-13 101.9 7.5 46 223-275 107-152 (392)
100 COG0665 DadA Glycine/D-amino a 98.9 4.6E-08 9.9E-13 98.3 14.9 38 8-46 2-39 (387)
101 COG1233 Phytoene dehydrogenase 98.9 8.8E-09 1.9E-13 105.9 9.7 39 9-48 2-40 (487)
102 KOG2404|consensus 98.9 1.8E-08 4E-13 92.2 10.4 50 225-276 158-207 (477)
103 TIGR02730 carot_isom carotene 98.8 1.1E-08 2.4E-13 105.9 9.7 58 217-281 235-292 (493)
104 COG0644 FixC Dehydrogenases (f 98.8 1.9E-08 4.1E-13 101.0 10.9 37 9-46 2-38 (396)
105 PRK06185 hypothetical protein; 98.8 8.4E-08 1.8E-12 97.1 13.9 59 223-286 120-178 (407)
106 COG3380 Predicted NAD/FAD-depe 98.8 4.3E-08 9.2E-13 88.0 9.9 33 12-45 3-35 (331)
107 PLN02172 flavin-containing mon 98.7 5.9E-08 1.3E-12 98.6 11.1 45 1-46 1-45 (461)
108 PRK07208 hypothetical protein; 98.7 6.7E-07 1.5E-11 92.5 18.7 38 9-47 3-40 (479)
109 PLN02985 squalene monooxygenas 98.7 2.4E-07 5.2E-12 95.7 15.1 53 223-278 159-211 (514)
110 PRK06183 mhpA 3-(3-hydroxyphen 98.7 2.6E-07 5.6E-12 96.8 14.9 44 1-45 1-44 (538)
111 TIGR00275 flavoprotein, HI0933 98.7 4.3E-08 9.2E-13 98.4 8.1 31 14-45 1-31 (400)
112 PRK07364 2-octaprenyl-6-methox 98.7 2.8E-07 6.1E-12 93.5 14.1 38 7-45 15-52 (415)
113 PRK06126 hypothetical protein; 98.7 3.7E-07 8E-12 95.9 14.9 36 8-44 5-40 (545)
114 KOG2844|consensus 98.7 9.5E-08 2.1E-12 95.8 9.2 59 219-286 195-253 (856)
115 KOG2415|consensus 98.6 7E-08 1.5E-12 91.5 7.7 74 211-286 183-269 (621)
116 PRK06370 mercuric reductase; V 98.6 5.1E-07 1.1E-11 92.8 14.5 36 8-44 3-38 (463)
117 PF01494 FAD_binding_3: FAD bi 98.6 1.2E-07 2.7E-12 93.9 9.7 35 10-45 1-35 (356)
118 TIGR01424 gluta_reduc_2 glutat 98.6 7.1E-08 1.5E-12 98.5 7.9 34 10-44 2-35 (446)
119 PRK08773 2-octaprenyl-3-methyl 98.6 2.2E-07 4.7E-12 93.6 11.3 37 8-45 4-40 (392)
120 PRK08244 hypothetical protein; 98.6 4.3E-07 9.3E-12 94.2 13.5 35 10-45 2-36 (493)
121 COG0492 TrxB Thioredoxin reduc 98.6 1.4E-07 3E-12 90.0 8.7 59 223-285 190-248 (305)
122 COG0445 GidA Flavin-dependent 98.6 1.2E-07 2.7E-12 93.4 8.4 51 223-279 112-162 (621)
123 PF13738 Pyr_redox_3: Pyridine 98.6 7.2E-08 1.6E-12 87.5 6.4 62 215-284 86-147 (203)
124 TIGR02733 desat_CrtD C-3',4' d 98.6 3.7E-07 8E-12 94.7 11.8 61 217-280 238-299 (492)
125 TIGR01350 lipoamide_DH dihydro 98.6 9.7E-07 2.1E-11 90.8 13.9 33 10-43 1-33 (461)
126 PRK05675 sdhA succinate dehydr 98.5 1.2E-06 2.6E-11 91.9 14.5 58 217-276 132-190 (570)
127 PRK05976 dihydrolipoamide dehy 98.5 2.5E-07 5.4E-12 95.3 9.1 36 8-44 2-37 (472)
128 COG0654 UbiH 2-polyprenyl-6-me 98.5 9.1E-07 2E-11 88.7 12.8 33 10-43 2-34 (387)
129 TIGR00136 gidA glucose-inhibit 98.5 3.9E-07 8.4E-12 93.6 10.1 52 223-280 108-159 (617)
130 PLN02507 glutathione reductase 98.5 2.2E-07 4.8E-12 95.9 8.4 34 8-42 23-56 (499)
131 PRK06847 hypothetical protein; 98.5 1.5E-06 3.2E-11 87.0 14.0 36 9-45 3-38 (375)
132 TIGR02053 MerA mercuric reduct 98.5 1.4E-06 3.1E-11 89.6 14.1 33 11-44 1-33 (463)
133 PRK06116 glutathione reductase 98.5 2.4E-07 5.2E-12 94.9 8.0 35 9-44 3-37 (450)
134 PRK06184 hypothetical protein; 98.5 1.6E-06 3.4E-11 90.2 14.2 35 10-45 3-37 (502)
135 PRK09126 hypothetical protein; 98.5 2.8E-06 6.1E-11 85.5 15.5 35 10-45 3-37 (392)
136 PRK05329 anaerobic glycerol-3- 98.5 3E-07 6.6E-12 91.8 8.3 60 215-279 263-322 (422)
137 PRK06416 dihydrolipoamide dehy 98.5 3.3E-07 7.1E-12 94.3 8.6 35 9-44 3-37 (462)
138 PRK06834 hypothetical protein; 98.5 1.7E-06 3.6E-11 89.2 13.7 35 10-45 3-37 (488)
139 PRK06467 dihydrolipoamide dehy 98.5 3.1E-07 6.8E-12 94.3 8.3 36 8-44 2-37 (471)
140 TIGR03378 glycerol3P_GlpB glyc 98.5 1.5E-06 3.2E-11 85.9 12.5 62 217-283 269-330 (419)
141 PRK08243 4-hydroxybenzoate 3-m 98.5 9.8E-07 2.1E-11 88.7 11.4 34 10-44 2-35 (392)
142 PRK07045 putative monooxygenas 98.5 1.5E-06 3.3E-11 87.3 12.6 37 8-45 3-39 (388)
143 PLN02697 lycopene epsilon cycl 98.5 1E-06 2.2E-11 90.6 11.1 35 8-43 106-140 (529)
144 KOG2665|consensus 98.5 1.2E-06 2.7E-11 80.3 10.2 213 7-287 45-268 (453)
145 PLN02463 lycopene beta cyclase 98.5 1.1E-06 2.4E-11 88.9 11.0 36 8-44 26-61 (447)
146 TIGR01988 Ubi-OHases Ubiquinon 98.5 2E-06 4.4E-11 86.3 13.0 33 12-45 1-33 (385)
147 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.6E-06 3.5E-11 87.0 11.8 36 8-44 2-37 (454)
148 TIGR01984 UbiH 2-polyprenyl-6- 98.4 2.8E-06 6E-11 85.2 13.6 33 12-45 1-34 (382)
149 PRK11445 putative oxidoreducta 98.4 4E-06 8.6E-11 82.9 14.4 34 10-45 1-34 (351)
150 PRK07333 2-octaprenyl-6-methox 98.4 1.6E-06 3.5E-11 87.6 11.8 36 10-45 1-37 (403)
151 TIGR02731 phytoene_desat phyto 98.4 2E-06 4.2E-11 88.4 12.3 56 223-279 224-280 (453)
152 PRK07233 hypothetical protein; 98.4 2.2E-06 4.7E-11 87.6 12.6 36 12-48 1-36 (434)
153 PRK06327 dihydrolipoamide dehy 98.4 5.8E-07 1.3E-11 92.6 7.8 35 8-43 2-36 (475)
154 COG2509 Uncharacterized FAD-de 98.4 8E-06 1.7E-10 79.2 14.8 52 223-280 184-235 (486)
155 PLN02612 phytoene desaturase 98.4 9.6E-06 2.1E-10 85.1 16.5 38 8-46 91-128 (567)
156 TIGR03377 glycerol3P_GlpA glyc 98.4 3.4E-06 7.3E-11 87.9 12.7 60 223-285 139-199 (516)
157 PRK08132 FAD-dependent oxidore 98.4 6.7E-06 1.5E-10 86.4 14.8 37 7-44 20-56 (547)
158 PRK07588 hypothetical protein; 98.4 6.5E-06 1.4E-10 82.8 14.2 32 12-44 2-33 (391)
159 PRK07190 hypothetical protein; 98.4 2.9E-06 6.3E-11 87.3 11.7 37 8-45 3-39 (487)
160 PF13450 NAD_binding_8: NAD(P) 98.4 4.3E-07 9.3E-12 65.8 3.9 31 15-46 1-31 (68)
161 KOG2853|consensus 98.4 1.8E-05 4E-10 73.5 15.4 38 9-46 85-125 (509)
162 PRK08163 salicylate hydroxylas 98.4 3.4E-06 7.5E-11 85.0 11.9 34 10-44 4-37 (396)
163 PRK07236 hypothetical protein; 98.4 9.3E-06 2E-10 81.5 14.8 34 10-44 6-39 (386)
164 PRK06617 2-octaprenyl-6-methox 98.3 9.7E-06 2.1E-10 81.0 14.2 34 10-44 1-34 (374)
165 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 7.9E-06 1.7E-10 82.0 13.3 34 10-44 2-35 (390)
166 KOG2852|consensus 98.3 9.4E-07 2E-11 80.1 5.7 65 216-285 153-217 (380)
167 COG2072 TrkA Predicted flavopr 98.3 2.7E-06 5.9E-11 86.2 9.8 40 6-46 4-44 (443)
168 COG3075 GlpB Anaerobic glycero 98.3 1.8E-06 3.8E-11 79.9 7.3 59 217-280 264-322 (421)
169 PRK06753 hypothetical protein; 98.3 9.3E-06 2E-10 81.2 12.2 33 12-45 2-34 (373)
170 TIGR01816 sdhA_forward succina 98.2 1.7E-05 3.6E-10 83.3 14.1 58 216-276 124-182 (565)
171 PRK05868 hypothetical protein; 98.2 2.8E-05 6E-10 77.5 14.3 33 12-45 3-35 (372)
172 PLN00093 geranylgeranyl diphos 98.2 1.5E-06 3.2E-11 88.4 5.1 37 7-44 36-72 (450)
173 TIGR02732 zeta_caro_desat caro 98.2 7.4E-06 1.6E-10 84.1 10.2 57 223-281 230-290 (474)
174 PRK15317 alkyl hydroperoxide r 98.2 1.4E-05 3.1E-10 83.2 12.3 59 223-283 398-457 (517)
175 PRK07538 hypothetical protein; 98.2 1.5E-05 3.2E-10 80.9 11.7 32 12-44 2-33 (413)
176 TIGR01316 gltA glutamate synth 98.1 8.8E-05 1.9E-09 75.8 16.8 38 8-46 131-168 (449)
177 TIGR01421 gluta_reduc_1 glutat 98.1 1.9E-06 4E-11 88.1 4.3 35 9-44 1-35 (450)
178 PLN02487 zeta-carotene desatur 98.1 2.4E-05 5.3E-10 81.3 12.5 56 223-280 306-365 (569)
179 TIGR02023 BchP-ChlP geranylger 98.1 2E-06 4.3E-11 86.4 4.2 32 11-43 1-32 (388)
180 TIGR02032 GG-red-SF geranylger 98.1 2.8E-06 6.1E-11 81.8 4.6 34 11-45 1-34 (295)
181 PF00743 FMO-like: Flavin-bind 98.1 9.9E-06 2.1E-10 83.7 8.4 35 12-47 3-37 (531)
182 PF04820 Trp_halogenase: Trypt 98.1 3E-06 6.4E-11 86.3 4.0 54 213-273 156-209 (454)
183 COG0562 Glf UDP-galactopyranos 98.1 4.6E-06 9.9E-11 77.1 4.8 37 10-47 1-37 (374)
184 PRK09897 hypothetical protein; 98.0 8.4E-05 1.8E-09 76.6 14.3 36 11-46 2-38 (534)
185 TIGR02352 thiamin_ThiO glycine 98.0 3.4E-05 7.5E-10 75.8 11.1 50 223-280 148-197 (337)
186 PTZ00058 glutathione reductase 98.0 4.4E-06 9.6E-11 86.9 4.9 36 8-44 46-81 (561)
187 PRK08020 ubiF 2-octaprenyl-3-m 98.0 4.6E-06 1E-10 83.9 4.8 35 9-44 4-38 (391)
188 PRK07608 ubiquinone biosynthes 98.0 4.6E-06 1E-10 83.8 4.7 36 9-45 4-39 (388)
189 PRK07494 2-octaprenyl-6-methox 98.0 6.4E-06 1.4E-10 82.8 5.3 36 8-44 5-40 (388)
190 KOG1335|consensus 98.0 2.5E-05 5.3E-10 73.9 8.6 36 8-44 37-72 (506)
191 PRK05714 2-octaprenyl-3-methyl 98.0 5.9E-06 1.3E-10 83.6 4.9 34 10-44 2-35 (405)
192 PRK08013 oxidoreductase; Provi 98.0 5.7E-06 1.2E-10 83.4 4.7 35 10-45 3-37 (400)
193 PRK08010 pyridine nucleotide-d 98.0 5.6E-06 1.2E-10 84.6 4.6 34 10-44 3-36 (441)
194 COG3634 AhpF Alkyl hydroperoxi 98.0 3.3E-05 7.1E-10 72.1 9.0 59 223-283 401-460 (520)
195 TIGR02028 ChlP geranylgeranyl 98.0 5.3E-06 1.1E-10 83.4 4.2 33 11-44 1-33 (398)
196 KOG0029|consensus 98.0 7.1E-06 1.5E-10 83.7 5.0 40 7-47 12-51 (501)
197 PRK06115 dihydrolipoamide dehy 98.0 6.2E-06 1.4E-10 84.7 4.4 33 10-43 3-35 (466)
198 TIGR00031 UDP-GALP_mutase UDP- 98.0 8.4E-06 1.8E-10 80.2 5.0 36 11-47 2-37 (377)
199 PRK07818 dihydrolipoamide dehy 98.0 7.6E-06 1.6E-10 84.2 4.8 34 10-44 4-37 (466)
200 KOG0405|consensus 97.9 6E-05 1.3E-09 70.4 9.9 38 6-44 16-53 (478)
201 KOG1399|consensus 97.9 3.1E-05 6.7E-10 77.6 8.6 37 10-47 6-42 (448)
202 PRK07845 flavoprotein disulfid 97.9 3E-05 6.6E-10 79.7 8.8 32 12-44 3-34 (466)
203 PRK07251 pyridine nucleotide-d 97.9 8.3E-06 1.8E-10 83.3 4.7 34 10-44 3-36 (438)
204 PRK08849 2-octaprenyl-3-methyl 97.9 9.3E-06 2E-10 81.4 4.6 34 10-44 3-36 (384)
205 KOG2311|consensus 97.9 1.8E-05 3.9E-10 76.8 6.2 36 8-44 26-61 (679)
206 PRK05249 soluble pyridine nucl 97.9 1.2E-05 2.5E-10 82.8 5.0 37 9-46 4-40 (461)
207 PRK14694 putative mercuric red 97.9 1.1E-05 2.4E-10 82.9 4.8 37 7-44 3-39 (468)
208 TIGR03143 AhpF_homolog putativ 97.9 1.1E-05 2.3E-10 84.7 4.7 37 8-45 2-38 (555)
209 PTZ00367 squalene epoxidase; P 97.9 1.3E-05 2.8E-10 83.4 5.2 37 7-44 30-66 (567)
210 PRK13748 putative mercuric red 97.9 1E-05 2.2E-10 85.4 4.5 35 9-44 97-131 (561)
211 PRK06996 hypothetical protein; 97.9 1.4E-05 3.1E-10 80.5 5.2 43 1-44 1-48 (398)
212 PLN02546 glutathione reductase 97.9 1E-05 2.3E-10 84.1 4.3 34 8-42 77-110 (558)
213 TIGR01989 COQ6 Ubiquinone bios 97.9 1.4E-05 3E-10 81.6 4.8 33 11-44 1-37 (437)
214 PF05834 Lycopene_cycl: Lycope 97.8 1.7E-05 3.6E-10 79.1 4.8 33 12-45 1-35 (374)
215 TIGR01790 carotene-cycl lycope 97.8 1.6E-05 3.4E-10 80.0 4.5 33 12-45 1-33 (388)
216 PTZ00153 lipoamide dehydrogena 97.8 1.7E-05 3.8E-10 83.7 4.6 34 9-43 115-148 (659)
217 TIGR01292 TRX_reduct thioredox 97.8 1.7E-05 3.6E-10 76.6 4.1 33 11-44 1-33 (300)
218 PRK06292 dihydrolipoamide dehy 97.8 2E-05 4.2E-10 81.2 4.6 34 9-43 2-35 (460)
219 PTZ00052 thioredoxin reductase 97.8 2E-05 4.3E-10 81.6 4.6 34 9-43 4-37 (499)
220 PRK08850 2-octaprenyl-6-methox 97.8 2.3E-05 5E-10 79.2 4.8 33 10-43 4-36 (405)
221 PLN02268 probable polyamine ox 97.8 2.4E-05 5.2E-10 79.9 4.9 36 12-48 2-37 (435)
222 TIGR01423 trypano_reduc trypan 97.7 2.8E-05 6E-10 80.0 4.6 35 9-43 2-36 (486)
223 PRK11883 protoporphyrinogen ox 97.7 2.8E-05 6.1E-10 79.8 4.4 35 12-47 2-38 (451)
224 PRK08294 phenol 2-monooxygenas 97.7 3.8E-05 8.3E-10 81.6 5.3 38 7-45 29-67 (634)
225 TIGR01789 lycopene_cycl lycope 97.7 3.3E-05 7.2E-10 76.7 4.4 33 12-44 1-34 (370)
226 COG1231 Monoamine oxidase [Ami 97.7 5.2E-05 1.1E-09 74.1 5.4 38 8-46 5-42 (450)
227 PLN02576 protoporphyrinogen ox 97.7 4.5E-05 9.7E-10 79.4 5.1 41 7-47 9-49 (496)
228 PRK05732 2-octaprenyl-6-methox 97.7 4.1E-05 8.9E-10 77.2 4.6 35 9-43 2-38 (395)
229 COG3349 Uncharacterized conser 97.7 4E-05 8.8E-10 76.2 4.3 34 13-47 3-36 (485)
230 PF13434 K_oxygenase: L-lysine 97.6 0.00036 7.9E-09 68.2 10.7 37 9-45 1-37 (341)
231 PRK10262 thioredoxin reductase 97.6 4.9E-05 1.1E-09 74.2 4.4 62 216-280 190-253 (321)
232 PRK05335 tRNA (uracil-5-)-meth 97.6 4.7E-05 1E-09 75.2 4.1 34 11-45 3-36 (436)
233 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00076 1.6E-08 67.6 12.7 54 217-280 141-194 (381)
234 COG1252 Ndh NADH dehydrogenase 97.6 0.00099 2.2E-08 65.6 12.7 59 215-284 213-271 (405)
235 TIGR00562 proto_IX_ox protopor 97.6 6.4E-05 1.4E-09 77.5 4.8 38 10-47 2-42 (462)
236 PLN02676 polyamine oxidase 97.6 7.6E-05 1.6E-09 76.9 5.1 41 7-48 23-64 (487)
237 PF07992 Pyr_redox_2: Pyridine 97.6 8.1E-05 1.8E-09 67.2 4.5 32 12-44 1-32 (201)
238 PLN02568 polyamine oxidase 97.6 8.7E-05 1.9E-09 77.1 5.2 37 10-47 5-46 (539)
239 PRK09564 coenzyme A disulfide 97.5 0.0012 2.5E-08 67.7 13.3 63 215-286 195-257 (444)
240 PRK09754 phenylpropionate diox 97.5 0.00075 1.6E-08 68.0 11.6 62 215-285 190-251 (396)
241 PRK14727 putative mercuric red 97.5 9.2E-05 2E-09 76.4 4.9 38 7-45 13-50 (479)
242 TIGR01438 TGR thioredoxin and 97.5 8.5E-05 1.8E-09 76.5 4.3 33 10-43 2-34 (484)
243 PLN02927 antheraxanthin epoxid 97.5 9.8E-05 2.1E-09 77.7 4.6 36 8-44 79-114 (668)
244 PRK12416 protoporphyrinogen ox 97.5 0.0001 2.2E-09 76.0 4.4 36 12-47 3-43 (463)
245 TIGR03315 Se_ygfK putative sel 97.5 0.00015 3.2E-09 79.6 5.6 37 9-46 536-572 (1012)
246 PF06100 Strep_67kDa_ant: Stre 97.4 0.0054 1.2E-07 61.3 15.6 38 10-47 2-42 (500)
247 TIGR03140 AhpF alkyl hydropero 97.4 0.00013 2.8E-09 75.9 4.4 57 224-282 400-457 (515)
248 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00013 2.9E-09 72.5 4.2 34 11-45 1-34 (433)
249 TIGR03452 mycothione_red mycot 97.4 0.00014 3.1E-09 74.4 4.5 50 224-280 221-270 (452)
250 PRK12831 putative oxidoreducta 97.4 0.00021 4.5E-09 73.3 5.6 38 8-46 138-175 (464)
251 TIGR01372 soxA sarcosine oxida 97.4 0.00015 3.3E-09 81.1 5.0 60 223-285 362-421 (985)
252 PLN02529 lysine-specific histo 97.4 0.00022 4.7E-09 76.1 5.3 40 7-47 157-196 (738)
253 PRK06475 salicylate hydroxylas 97.3 0.00018 3.8E-09 72.7 4.3 32 12-44 4-35 (400)
254 PRK07846 mycothione reductase; 97.3 0.0002 4.3E-09 73.3 4.6 50 224-280 218-267 (451)
255 PF00070 Pyr_redox: Pyridine n 97.3 0.00032 6.9E-09 52.8 4.5 32 13-45 2-33 (80)
256 KOG2614|consensus 97.3 0.0002 4.4E-09 69.0 4.2 34 10-44 2-35 (420)
257 COG1232 HemY Protoporphyrinoge 97.3 0.0002 4.3E-09 71.5 4.2 34 13-47 3-38 (444)
258 KOG2960|consensus 97.3 8.6E-05 1.9E-09 64.4 1.3 37 10-46 76-113 (328)
259 COG2907 Predicted NAD/FAD-bind 97.3 0.00051 1.1E-08 64.5 6.3 38 8-47 6-43 (447)
260 COG1148 HdrA Heterodisulfide r 97.3 0.00025 5.4E-09 69.4 4.4 36 11-47 125-160 (622)
261 PF13454 NAD_binding_9: FAD-NA 97.3 0.0083 1.8E-07 51.6 13.2 32 14-45 1-36 (156)
262 PLN02328 lysine-specific histo 97.3 0.00034 7.3E-09 75.1 5.4 38 9-47 237-274 (808)
263 PF00996 GDI: GDP dissociation 97.3 0.00028 6.1E-09 70.4 4.5 41 7-48 1-41 (438)
264 KOG4716|consensus 97.2 0.00031 6.8E-09 65.5 3.6 37 7-44 16-52 (503)
265 PRK12810 gltD glutamate syntha 97.2 0.00047 1E-08 71.0 5.2 60 223-284 340-410 (471)
266 TIGR03219 salicylate_mono sali 97.2 0.00036 7.8E-09 70.8 4.3 33 12-45 2-35 (414)
267 PRK06912 acoL dihydrolipoamide 97.2 0.00036 7.7E-09 71.7 4.2 33 12-45 2-34 (458)
268 PRK12775 putative trifunctiona 97.1 0.00055 1.2E-08 76.4 5.6 37 9-46 429-465 (1006)
269 PRK12779 putative bifunctional 97.1 0.0005 1.1E-08 76.0 5.1 38 9-47 305-342 (944)
270 PRK11749 dihydropyrimidine deh 97.1 0.00058 1.3E-08 70.1 5.3 38 8-46 138-175 (457)
271 PRK12778 putative bifunctional 97.1 0.00059 1.3E-08 74.5 5.6 38 8-46 429-466 (752)
272 PRK12769 putative oxidoreducta 97.0 0.00068 1.5E-08 72.8 5.1 37 9-46 326-362 (654)
273 PRK04965 NADH:flavorubredoxin 97.0 0.0084 1.8E-07 60.0 12.5 57 223-286 194-250 (377)
274 PRK09853 putative selenate red 97.0 0.00074 1.6E-08 74.0 5.1 37 9-46 538-574 (1019)
275 PLN02852 ferredoxin-NADP+ redu 97.0 0.001 2.2E-08 68.0 5.7 39 9-47 25-64 (491)
276 KOG0685|consensus 97.0 0.0009 1.9E-08 65.7 4.7 41 7-47 18-58 (498)
277 PRK06567 putative bifunctional 96.9 0.001 2.2E-08 72.1 5.2 35 9-44 382-416 (1028)
278 PRK12814 putative NADPH-depend 96.9 0.0011 2.4E-08 70.9 5.5 37 9-46 192-228 (652)
279 KOG1276|consensus 96.9 0.0015 3.3E-08 63.2 5.3 40 8-47 9-49 (491)
280 PLN03000 amine oxidase 96.9 0.0013 2.7E-08 71.0 5.1 39 8-47 182-220 (881)
281 PRK08255 salicylyl-CoA 5-hydro 96.8 0.001 2.2E-08 72.7 4.2 34 12-45 2-36 (765)
282 TIGR01318 gltD_gamma_fam gluta 96.7 0.0018 3.9E-08 66.6 4.8 37 9-46 140-176 (467)
283 PRK14989 nitrite reductase sub 96.7 0.0097 2.1E-07 65.4 10.6 58 223-285 198-255 (847)
284 KOG0404|consensus 96.7 0.0078 1.7E-07 53.1 7.9 64 215-281 197-261 (322)
285 PRK12770 putative glutamate sy 96.7 0.0022 4.8E-08 63.4 5.2 38 9-47 17-54 (352)
286 TIGR03140 AhpF alkyl hydropero 96.7 0.024 5.2E-07 59.2 13.1 32 12-44 354-385 (515)
287 PTZ00318 NADH dehydrogenase-li 96.7 0.0026 5.6E-08 64.6 5.6 45 1-46 1-45 (424)
288 KOG3855|consensus 96.6 0.0019 4.1E-08 62.3 4.0 37 9-45 35-74 (481)
289 TIGR02374 nitri_red_nirB nitri 96.6 0.011 2.4E-07 64.7 10.4 56 223-285 193-248 (785)
290 TIGR01317 GOGAT_sm_gam glutama 96.6 0.0024 5.1E-08 66.0 4.9 36 10-46 143-178 (485)
291 PRK07818 dihydrolipoamide dehy 96.6 0.025 5.3E-07 58.3 12.3 60 223-285 224-285 (466)
292 PLN02976 amine oxidase 96.6 0.0025 5.3E-08 71.5 4.9 37 9-46 692-728 (1713)
293 PRK12809 putative oxidoreducta 96.5 0.0032 7E-08 67.4 5.5 37 9-46 309-345 (639)
294 PTZ00188 adrenodoxin reductase 96.5 0.0026 5.6E-08 64.2 4.3 37 10-47 39-76 (506)
295 PRK12771 putative glutamate sy 96.4 0.0049 1.1E-07 65.1 5.6 37 9-46 136-172 (564)
296 PRK06327 dihydrolipoamide dehy 96.4 0.033 7.2E-07 57.5 11.6 54 223-279 235-288 (475)
297 PRK13984 putative oxidoreducta 96.3 0.0049 1.1E-07 65.7 5.1 38 8-46 281-318 (604)
298 PRK10262 thioredoxin reductase 96.2 0.081 1.8E-06 51.6 12.9 32 12-44 148-179 (321)
299 COG4529 Uncharacterized protei 96.2 0.029 6.4E-07 55.8 9.5 36 11-46 2-39 (474)
300 TIGR01292 TRX_reduct thioredox 96.1 0.074 1.6E-06 51.1 12.0 56 225-283 190-246 (300)
301 PRK12831 putative oxidoreducta 96.1 0.031 6.8E-07 57.4 9.4 32 12-44 283-314 (464)
302 KOG1439|consensus 95.9 0.0053 1.1E-07 59.0 2.7 40 8-48 2-41 (440)
303 KOG2403|consensus 95.9 0.012 2.6E-07 58.9 5.1 51 458-508 415-470 (642)
304 PRK13512 coenzyme A disulfide 95.9 0.0078 1.7E-07 61.5 4.1 58 216-285 194-251 (438)
305 KOG4405|consensus 95.8 0.011 2.5E-07 56.8 4.3 40 7-47 5-44 (547)
306 KOG1800|consensus 95.6 0.015 3.3E-07 55.6 4.4 38 9-46 19-57 (468)
307 COG5044 MRS6 RAB proteins gera 95.5 0.022 4.7E-07 54.3 5.2 37 10-47 6-42 (434)
308 TIGR03169 Nterm_to_SelD pyridi 95.4 0.02 4.3E-07 57.0 4.9 35 12-46 1-37 (364)
309 COG1206 Gid NAD(FAD)-utilizing 95.3 0.012 2.7E-07 55.1 2.9 33 12-45 5-37 (439)
310 COG0493 GltD NADPH-dependent g 95.3 0.018 3.8E-07 58.4 4.2 36 11-47 124-159 (457)
311 PRK04965 NADH:flavorubredoxin 95.3 0.019 4.1E-07 57.4 4.2 34 11-44 3-37 (377)
312 KOG1336|consensus 95.2 0.12 2.7E-06 51.2 9.3 55 223-282 266-320 (478)
313 KOG3851|consensus 94.9 0.025 5.4E-07 52.8 3.4 38 8-45 37-75 (446)
314 PF13434 K_oxygenase: L-lysine 94.7 0.58 1.3E-05 45.9 12.8 49 223-273 290-339 (341)
315 PF02558 ApbA: Ketopantoate re 94.7 0.035 7.7E-07 47.3 3.8 31 13-44 1-31 (151)
316 KOG2755|consensus 94.6 0.024 5.3E-07 51.4 2.5 33 13-45 2-35 (334)
317 TIGR03862 flavo_PP4765 unchara 94.3 0.11 2.3E-06 51.4 6.6 90 170-279 56-145 (376)
318 COG0446 HcaD Uncharacterized N 94.3 0.045 9.7E-07 55.3 4.2 35 11-46 137-171 (415)
319 KOG0399|consensus 94.1 0.069 1.5E-06 58.0 5.0 39 9-48 1784-1822(2142)
320 PF01210 NAD_Gly3P_dh_N: NAD-d 94.0 0.066 1.4E-06 46.1 3.9 31 13-44 2-32 (157)
321 PRK09754 phenylpropionate diox 93.7 0.08 1.7E-06 53.3 4.5 34 12-46 146-179 (396)
322 PF02737 3HCDH_N: 3-hydroxyacy 93.6 0.076 1.7E-06 46.8 3.7 31 13-44 2-32 (180)
323 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 0.095 2.1E-06 46.3 3.7 32 13-45 3-34 (185)
324 PRK05976 dihydrolipoamide dehy 93.1 0.099 2.2E-06 54.0 4.3 33 12-45 182-214 (472)
325 COG0569 TrkA K+ transport syst 93.0 0.11 2.3E-06 47.7 3.8 33 12-45 2-34 (225)
326 PRK05708 2-dehydropantoate 2-r 92.9 0.11 2.3E-06 50.3 3.9 32 12-44 4-35 (305)
327 PRK07251 pyridine nucleotide-d 92.8 0.12 2.7E-06 52.7 4.4 33 12-45 159-191 (438)
328 TIGR01421 gluta_reduc_1 glutat 92.5 0.14 3E-06 52.5 4.3 33 12-45 168-200 (450)
329 PRK06467 dihydrolipoamide dehy 92.5 0.14 3.1E-06 52.8 4.3 33 12-45 176-208 (471)
330 PRK07846 mycothione reductase; 92.5 0.15 3.3E-06 52.2 4.5 35 11-46 167-201 (451)
331 TIGR01350 lipoamide_DH dihydro 92.4 0.13 2.8E-06 53.0 4.0 33 11-44 171-203 (461)
332 TIGR02374 nitri_red_nirB nitri 92.3 0.14 3.1E-06 56.2 4.3 34 13-46 1-36 (785)
333 TIGR02053 MerA mercuric reduct 92.3 0.15 3.2E-06 52.6 4.3 34 11-45 167-200 (463)
334 PRK06912 acoL dihydrolipoamide 92.3 0.16 3.5E-06 52.2 4.5 33 12-45 172-204 (458)
335 COG1249 Lpd Pyruvate/2-oxoglut 92.1 0.17 3.7E-06 51.3 4.4 33 12-45 175-207 (454)
336 PRK06129 3-hydroxyacyl-CoA deh 92.1 0.15 3.3E-06 49.3 3.8 32 12-44 4-35 (308)
337 PRK06249 2-dehydropantoate 2-r 92.1 0.17 3.7E-06 49.1 4.1 32 12-44 7-38 (313)
338 PRK06115 dihydrolipoamide dehy 91.9 0.19 4.1E-06 51.8 4.5 33 12-45 176-208 (466)
339 PRK06370 mercuric reductase; V 91.9 0.18 3.9E-06 51.9 4.4 34 11-45 172-205 (463)
340 PRK01438 murD UDP-N-acetylmura 91.8 0.19 4E-06 52.1 4.4 32 12-44 18-49 (480)
341 PRK13512 coenzyme A disulfide 91.8 0.19 4E-06 51.4 4.2 34 12-46 150-183 (438)
342 PRK06416 dihydrolipoamide dehy 91.6 0.21 4.6E-06 51.4 4.4 33 12-45 174-206 (462)
343 PRK02705 murD UDP-N-acetylmura 91.6 0.21 4.5E-06 51.4 4.3 32 13-45 3-34 (459)
344 TIGR03385 CoA_CoA_reduc CoA-di 91.5 0.21 4.5E-06 50.9 4.2 33 11-44 138-170 (427)
345 PF01593 Amino_oxidase: Flavin 91.4 0.15 3.3E-06 51.6 3.2 44 224-274 221-264 (450)
346 KOG3923|consensus 91.3 0.21 4.6E-06 46.4 3.6 35 10-44 3-43 (342)
347 PRK05249 soluble pyridine nucl 91.3 0.23 5E-06 51.1 4.4 33 12-45 177-209 (461)
348 PRK12921 2-dehydropantoate 2-r 91.1 0.23 4.9E-06 48.0 3.9 29 13-42 3-31 (305)
349 TIGR03452 mycothione_red mycot 91.0 0.25 5.3E-06 50.7 4.2 33 12-45 171-203 (452)
350 PRK06718 precorrin-2 dehydroge 91.0 0.31 6.7E-06 43.8 4.3 34 9-43 9-42 (202)
351 PRK14989 nitrite reductase sub 91.0 0.26 5.6E-06 54.4 4.6 35 12-46 5-42 (847)
352 PRK06522 2-dehydropantoate 2-r 91.0 0.26 5.5E-06 47.6 4.1 31 13-44 3-33 (304)
353 PRK06292 dihydrolipoamide dehy 90.9 0.26 5.5E-06 50.8 4.2 33 12-45 171-203 (460)
354 PRK08293 3-hydroxybutyryl-CoA 90.7 0.28 6.1E-06 46.9 4.0 32 12-44 5-36 (287)
355 PRK09260 3-hydroxybutyryl-CoA 90.7 0.25 5.5E-06 47.2 3.7 31 13-44 4-34 (288)
356 TIGR01424 gluta_reduc_2 glutat 90.6 0.3 6.5E-06 50.0 4.3 33 12-45 168-200 (446)
357 PTZ00153 lipoamide dehydrogena 90.5 0.31 6.7E-06 52.1 4.5 33 12-45 314-346 (659)
358 PF13241 NAD_binding_7: Putati 90.5 0.31 6.6E-06 38.5 3.4 33 10-43 7-39 (103)
359 PRK07066 3-hydroxybutyryl-CoA 90.4 0.32 6.9E-06 47.0 4.0 32 12-44 9-40 (321)
360 PRK07819 3-hydroxybutyryl-CoA 90.2 0.31 6.8E-06 46.5 3.8 33 12-45 7-39 (286)
361 PRK06116 glutathione reductase 90.1 0.35 7.7E-06 49.6 4.5 34 11-45 168-201 (450)
362 PRK07845 flavoprotein disulfid 90.1 0.36 7.8E-06 49.7 4.5 33 12-45 179-211 (466)
363 COG1252 Ndh NADH dehydrogenase 90.1 0.2 4.4E-06 49.7 2.5 36 11-46 156-203 (405)
364 TIGR03143 AhpF_homolog putativ 90.0 0.33 7.2E-06 51.2 4.2 33 12-45 145-177 (555)
365 PLN02507 glutathione reductase 89.9 0.36 7.8E-06 50.2 4.3 33 12-45 205-237 (499)
366 PRK09564 coenzyme A disulfide 89.8 0.36 7.8E-06 49.4 4.2 34 11-45 150-183 (444)
367 TIGR02354 thiF_fam2 thiamine b 89.7 0.45 9.7E-06 42.7 4.2 34 10-44 21-55 (200)
368 PF01488 Shikimate_DH: Shikima 89.7 0.42 9.1E-06 39.8 3.8 34 10-44 12-46 (135)
369 PTZ00058 glutathione reductase 89.7 0.35 7.5E-06 50.8 4.0 32 12-44 239-270 (561)
370 PRK04148 hypothetical protein; 89.6 0.31 6.6E-06 40.2 2.8 33 11-45 18-50 (134)
371 PF02254 TrkA_N: TrkA-N domain 89.6 0.41 8.8E-06 38.6 3.6 31 13-44 1-31 (116)
372 COG3486 IucD Lysine/ornithine 89.6 0.57 1.2E-05 45.8 5.0 40 7-46 2-41 (436)
373 PRK06567 putative bifunctional 89.5 1 2.3E-05 49.7 7.5 55 224-279 652-732 (1028)
374 PRK06719 precorrin-2 dehydroge 89.5 0.63 1.4E-05 39.9 4.8 31 10-41 13-43 (157)
375 PRK14106 murD UDP-N-acetylmura 89.5 0.42 9E-06 49.1 4.4 33 11-44 6-38 (450)
376 COG1748 LYS9 Saccharopine dehy 89.5 0.42 9.2E-06 47.1 4.1 33 12-45 3-36 (389)
377 cd01080 NAD_bind_m-THF_DH_Cycl 89.4 0.56 1.2E-05 40.6 4.4 35 9-44 43-78 (168)
378 PRK08229 2-dehydropantoate 2-r 89.3 0.41 8.9E-06 47.1 4.0 32 12-44 4-35 (341)
379 PLN02546 glutathione reductase 89.2 0.42 9.1E-06 50.2 4.2 33 12-45 254-286 (558)
380 PRK08010 pyridine nucleotide-d 89.2 0.48 1E-05 48.5 4.6 33 12-45 160-192 (441)
381 PRK15116 sulfur acceptor prote 89.1 0.51 1.1E-05 44.2 4.3 35 10-45 30-65 (268)
382 PRK15317 alkyl hydroperoxide r 89.1 0.42 9E-06 50.0 4.1 33 12-45 353-385 (517)
383 PRK13748 putative mercuric red 89.0 0.45 9.7E-06 50.4 4.3 32 12-44 272-303 (561)
384 PRK14694 putative mercuric red 88.8 0.48 1.1E-05 48.8 4.3 32 12-44 180-211 (468)
385 PRK07530 3-hydroxybutyryl-CoA 88.8 0.5 1.1E-05 45.3 4.1 32 12-44 6-37 (292)
386 TIGR01470 cysG_Nterm siroheme 88.7 0.57 1.2E-05 42.2 4.2 31 12-43 11-41 (205)
387 PRK06035 3-hydroxyacyl-CoA deh 88.7 0.52 1.1E-05 45.2 4.2 32 12-44 5-36 (291)
388 COG1004 Ugd Predicted UDP-gluc 88.7 0.47 1E-05 46.3 3.8 31 13-44 3-33 (414)
389 TIGR01316 gltA glutamate synth 88.5 0.49 1.1E-05 48.5 4.1 32 12-44 274-305 (449)
390 PRK14727 putative mercuric red 88.5 0.5 1.1E-05 48.9 4.1 32 12-44 190-221 (479)
391 PRK12475 thiamine/molybdopteri 88.3 0.57 1.2E-05 45.7 4.2 35 10-45 24-59 (338)
392 PRK14620 NAD(P)H-dependent gly 88.1 0.57 1.2E-05 45.8 4.1 31 13-44 3-33 (326)
393 PRK12770 putative glutamate sy 88.1 0.52 1.1E-05 46.6 3.8 32 12-44 174-206 (352)
394 PRK05808 3-hydroxybutyryl-CoA 88.0 0.51 1.1E-05 45.0 3.6 32 12-44 5-36 (282)
395 PRK07688 thiamine/molybdopteri 88.0 0.66 1.4E-05 45.3 4.4 34 10-44 24-58 (339)
396 COG1893 ApbA Ketopantoate redu 87.9 0.55 1.2E-05 45.2 3.7 32 13-45 3-34 (307)
397 PTZ00052 thioredoxin reductase 87.8 0.55 1.2E-05 48.8 3.9 31 12-43 184-214 (499)
398 TIGR01763 MalateDH_bact malate 87.6 0.66 1.4E-05 44.7 4.1 32 12-44 3-35 (305)
399 PF00899 ThiF: ThiF family; I 87.6 0.63 1.4E-05 38.8 3.5 34 11-45 3-37 (135)
400 cd01075 NAD_bind_Leu_Phe_Val_D 87.5 0.77 1.7E-05 41.2 4.3 32 12-44 30-61 (200)
401 cd01483 E1_enzyme_family Super 87.5 0.79 1.7E-05 38.5 4.1 32 13-45 2-34 (143)
402 cd01487 E1_ThiF_like E1_ThiF_l 87.5 0.72 1.6E-05 40.3 3.9 32 13-45 2-34 (174)
403 KOG2304|consensus 87.5 0.67 1.4E-05 41.3 3.6 42 3-45 4-45 (298)
404 TIGR01438 TGR thioredoxin and 87.5 0.56 1.2E-05 48.6 3.7 31 12-43 182-212 (484)
405 PTZ00318 NADH dehydrogenase-li 87.3 0.69 1.5E-05 47.0 4.2 51 223-285 239-289 (424)
406 TIGR01423 trypano_reduc trypan 87.0 0.75 1.6E-05 47.5 4.4 33 12-45 189-224 (486)
407 TIGR00518 alaDH alanine dehydr 86.8 0.98 2.1E-05 44.8 4.9 34 10-44 167-200 (370)
408 cd05292 LDH_2 A subgroup of L- 86.6 0.84 1.8E-05 44.1 4.2 33 12-45 2-36 (308)
409 PRK11064 wecC UDP-N-acetyl-D-m 86.6 0.71 1.5E-05 46.6 3.9 33 12-45 5-37 (415)
410 PRK14618 NAD(P)H-dependent gly 86.5 0.97 2.1E-05 44.2 4.6 32 12-44 6-37 (328)
411 PLN02545 3-hydroxybutyryl-CoA 86.2 0.83 1.8E-05 43.9 4.0 31 13-44 7-37 (295)
412 PRK00094 gpsA NAD(P)H-dependen 86.1 0.82 1.8E-05 44.6 3.9 32 12-44 3-34 (325)
413 PRK06130 3-hydroxybutyryl-CoA 85.9 1 2.2E-05 43.6 4.4 32 12-44 6-37 (311)
414 TIGR02356 adenyl_thiF thiazole 85.9 1.2 2.5E-05 40.1 4.5 35 10-45 21-56 (202)
415 TIGR03026 NDP-sugDHase nucleot 85.7 0.81 1.7E-05 46.3 3.7 32 13-45 3-34 (411)
416 PRK12549 shikimate 5-dehydroge 85.6 1 2.3E-05 42.8 4.2 33 11-44 128-161 (284)
417 PF01262 AlaDh_PNT_C: Alanine 85.3 1.1 2.4E-05 38.9 3.9 33 11-44 21-53 (168)
418 TIGR03736 PRTRC_ThiF PRTRC sys 85.1 1.2 2.6E-05 41.1 4.2 37 8-44 9-55 (244)
419 cd05311 NAD_bind_2_malic_enz N 85.1 0.97 2.1E-05 41.4 3.6 33 11-44 26-61 (226)
420 cd00401 AdoHcyase S-adenosyl-L 84.8 1.1 2.5E-05 44.8 4.2 33 11-44 203-235 (413)
421 TIGR01915 npdG NADPH-dependent 84.6 1.2 2.7E-05 40.6 4.1 31 13-44 3-34 (219)
422 PLN02353 probable UDP-glucose 84.3 1.2 2.5E-05 45.8 4.1 33 13-45 4-37 (473)
423 PRK02472 murD UDP-N-acetylmura 84.3 1.2 2.5E-05 45.8 4.2 32 12-44 7-38 (447)
424 TIGR02355 moeB molybdopterin s 84.2 1.4 3.1E-05 40.7 4.4 35 10-45 24-59 (240)
425 TIGR02279 PaaC-3OHAcCoADH 3-hy 84.2 1.1 2.3E-05 46.5 3.9 33 12-45 7-39 (503)
426 cd05191 NAD_bind_amino_acid_DH 83.9 2 4.2E-05 32.5 4.3 33 10-42 23-55 (86)
427 PRK14619 NAD(P)H-dependent gly 83.9 1.3 2.9E-05 42.8 4.2 32 12-44 6-37 (308)
428 COG2072 TrkA Predicted flavopr 83.8 1.2 2.5E-05 45.5 4.0 33 12-45 177-209 (443)
429 cd05291 HicDH_like L-2-hydroxy 83.8 1.4 3.1E-05 42.4 4.4 32 13-45 3-36 (306)
430 COG0686 Ald Alanine dehydrogen 83.6 1.1 2.5E-05 42.1 3.3 34 10-44 168-201 (371)
431 PRK11749 dihydropyrimidine deh 83.6 1.3 2.7E-05 45.6 4.1 33 11-44 274-307 (457)
432 PRK08644 thiamine biosynthesis 83.4 1.5 3.4E-05 39.6 4.2 34 10-44 28-62 (212)
433 cd01339 LDH-like_MDH L-lactate 83.4 1.3 2.9E-05 42.6 4.0 32 13-45 1-33 (300)
434 PRK05690 molybdopterin biosynt 83.1 1.7 3.7E-05 40.4 4.4 35 10-45 32-67 (245)
435 PRK07417 arogenate dehydrogena 83.0 1.3 2.8E-05 42.1 3.7 31 13-44 3-33 (279)
436 PRK12548 shikimate 5-dehydroge 82.9 1.4 3E-05 42.1 3.9 32 12-44 128-160 (289)
437 PRK00066 ldh L-lactate dehydro 82.7 2.1 4.5E-05 41.5 5.0 35 10-45 6-42 (315)
438 PRK08328 hypothetical protein; 82.6 1.7 3.7E-05 39.9 4.2 34 10-44 27-61 (231)
439 PRK08268 3-hydroxy-acyl-CoA de 82.4 1.4 3.1E-05 45.7 4.0 33 12-45 9-41 (507)
440 PRK11730 fadB multifunctional 82.4 1.4 3.1E-05 47.9 4.1 33 12-45 315-347 (715)
441 PF00670 AdoHcyase_NAD: S-aden 82.3 1.6 3.4E-05 37.3 3.5 32 12-44 25-56 (162)
442 PF10727 Rossmann-like: Rossma 82.3 1 2.2E-05 36.9 2.3 36 6-42 6-41 (127)
443 TIGR02437 FadB fatty oxidation 82.1 1.5 3.2E-05 47.7 4.1 32 12-44 315-346 (714)
444 PLN02172 flavin-containing mon 82.0 1.3 2.8E-05 45.4 3.5 32 12-44 206-237 (461)
445 PRK07531 bifunctional 3-hydrox 82.0 1.5 3.3E-05 45.4 4.0 32 12-44 6-37 (495)
446 TIGR02853 spore_dpaA dipicolin 81.9 1.7 3.7E-05 41.4 4.0 33 11-44 152-184 (287)
447 COG1250 FadB 3-hydroxyacyl-CoA 81.9 1.5 3.3E-05 41.8 3.6 32 12-44 5-36 (307)
448 cd00757 ThiF_MoeB_HesA_family 81.8 1.9 4.1E-05 39.6 4.1 35 10-45 21-56 (228)
449 cd01486 Apg7 Apg7 is an E1-lik 81.8 2 4.2E-05 40.8 4.2 32 13-45 2-34 (307)
450 PF03807 F420_oxidored: NADP o 81.7 1.9 4E-05 33.3 3.5 31 13-44 2-36 (96)
451 PRK08223 hypothetical protein; 81.6 1.8 3.9E-05 40.9 3.9 35 10-45 27-62 (287)
452 cd01490 Ube1_repeat2 Ubiquitin 81.6 1.7 3.8E-05 43.7 4.0 32 13-45 2-39 (435)
453 PF13478 XdhC_C: XdhC Rossmann 81.4 1.5 3.3E-05 36.4 3.1 32 13-45 1-32 (136)
454 cd01484 E1-2_like Ubiquitin ac 81.2 1.9 4.1E-05 39.6 3.9 31 13-44 2-33 (234)
455 TIGR00936 ahcY adenosylhomocys 80.9 2.1 4.5E-05 42.8 4.3 33 11-44 196-228 (406)
456 PRK06223 malate dehydrogenase; 80.9 2 4.3E-05 41.5 4.2 32 12-44 4-36 (307)
457 COG1251 NirB NAD(P)H-nitrite r 80.7 4.8 0.00011 42.7 6.9 57 223-286 198-254 (793)
458 cd01078 NAD_bind_H4MPT_DH NADP 80.6 2.4 5.3E-05 37.7 4.4 33 11-44 29-62 (194)
459 cd01485 E1-1_like Ubiquitin ac 80.5 2.1 4.7E-05 38.2 3.9 34 10-44 19-53 (198)
460 PTZ00082 L-lactate dehydrogena 80.4 2.9 6.2E-05 40.6 5.0 34 11-45 7-41 (321)
461 TIGR01381 E1_like_apg7 E1-like 80.4 2 4.4E-05 45.1 4.1 35 10-45 338-373 (664)
462 PLN02520 bifunctional 3-dehydr 80.3 2 4.4E-05 44.8 4.2 31 12-43 381-411 (529)
463 COG3634 AhpF Alkyl hydroperoxi 80.3 1.4 3E-05 42.1 2.6 35 10-45 354-388 (520)
464 cd01492 Aos1_SUMO Ubiquitin ac 80.1 2.3 4.9E-05 38.1 3.9 34 10-44 21-55 (197)
465 TIGR00507 aroE shikimate 5-deh 79.9 2.3 4.9E-05 40.2 4.1 33 11-44 118-150 (270)
466 PRK01710 murD UDP-N-acetylmura 79.9 2.2 4.8E-05 43.8 4.4 32 12-44 16-47 (458)
467 cd01488 Uba3_RUB Ubiquitin act 79.9 2.3 5E-05 40.4 4.1 31 13-44 2-33 (291)
468 TIGR02441 fa_ox_alpha_mit fatt 79.9 2 4.3E-05 46.9 4.1 33 12-45 337-369 (737)
469 TIGR01505 tartro_sem_red 2-hyd 79.8 1.9 4.2E-05 41.2 3.6 31 13-44 2-32 (291)
470 PRK05476 S-adenosyl-L-homocyst 79.7 2.5 5.3E-05 42.6 4.4 33 11-44 213-245 (425)
471 PRK12778 putative bifunctional 79.6 1.8 4E-05 47.5 3.9 32 12-44 572-604 (752)
472 PRK08306 dipicolinate synthase 79.4 2.4 5.2E-05 40.7 4.1 34 10-44 152-185 (296)
473 PRK04308 murD UDP-N-acetylmura 79.4 2.4 5.2E-05 43.4 4.4 33 12-45 7-39 (445)
474 PRK09424 pntA NAD(P) transhydr 79.3 2.1 4.5E-05 44.2 3.8 34 10-44 165-198 (509)
475 PRK09496 trkA potassium transp 79.2 2 4.3E-05 44.1 3.8 33 12-45 2-34 (453)
476 PF03446 NAD_binding_2: NAD bi 79.2 2.5 5.4E-05 36.5 3.8 32 12-44 3-34 (163)
477 KOG2495|consensus 78.8 1.1 2.3E-05 44.2 1.5 31 13-44 221-265 (491)
478 PRK05562 precorrin-2 dehydroge 78.6 3 6.4E-05 37.9 4.2 32 10-42 25-56 (223)
479 PRK00258 aroE shikimate 5-dehy 78.5 2.6 5.6E-05 40.1 4.0 33 11-44 124-157 (278)
480 PRK08017 oxidoreductase; Provi 78.4 2.7 5.9E-05 39.1 4.2 31 13-44 5-36 (256)
481 cd01489 Uba2_SUMO Ubiquitin ac 78.2 2.4 5.3E-05 40.7 3.7 32 13-45 2-34 (312)
482 TIGR03467 HpnE squalene-associ 78.2 2.5 5.3E-05 42.7 4.1 51 223-279 208-258 (419)
483 PRK06171 sorbitol-6-phosphate 78.2 3.8 8.2E-05 38.4 5.1 42 1-44 1-43 (266)
484 PRK15057 UDP-glucose 6-dehydro 77.5 2.4 5.2E-05 42.4 3.6 31 13-45 3-33 (388)
485 cd01065 NAD_bind_Shikimate_DH 77.5 3.2 6.9E-05 35.2 4.0 33 11-44 20-53 (155)
486 PF00056 Ldh_1_N: lactate/mala 77.5 3.6 7.8E-05 34.5 4.2 33 12-44 2-36 (141)
487 cd00755 YgdL_like Family of ac 77.4 3.3 7.2E-05 38.0 4.2 35 10-45 11-46 (231)
488 COG3486 IucD Lysine/ornithine 77.4 5.8 0.00013 39.1 5.9 57 223-281 289-347 (436)
489 PRK12550 shikimate 5-dehydroge 77.4 2.8 6.2E-05 39.5 3.9 32 12-44 124-156 (272)
490 PRK10669 putative cation:proto 77.3 2.8 6.2E-05 44.3 4.3 35 10-45 417-451 (558)
491 KOG2018|consensus 77.3 2.6 5.7E-05 39.5 3.4 31 13-44 77-108 (430)
492 PRK08762 molybdopterin biosynt 77.2 2.9 6.3E-05 41.7 4.2 35 10-45 135-170 (376)
493 PRK14027 quinate/shikimate deh 77.0 3.2 7E-05 39.4 4.2 33 11-44 128-161 (283)
494 PRK15461 NADH-dependent gamma- 77.0 2.9 6.3E-05 40.1 3.9 32 12-44 3-34 (296)
495 PRK12810 gltD glutamate syntha 76.9 5.3 0.00011 41.2 6.1 38 8-46 141-178 (471)
496 cd05290 LDH_3 A subgroup of L- 76.8 3.1 6.8E-05 40.0 4.1 31 13-44 2-34 (307)
497 PLN02494 adenosylhomocysteinas 76.8 3.4 7.3E-05 41.9 4.4 33 11-44 255-287 (477)
498 COG0287 TyrA Prephenate dehydr 76.8 3.3 7.1E-05 39.2 4.1 33 12-45 5-37 (279)
499 PRK07326 short chain dehydroge 76.7 3 6.5E-05 38.2 3.9 32 12-44 8-40 (237)
500 TIGR03376 glycerol3P_DH glycer 76.5 3.1 6.6E-05 40.7 4.0 30 12-42 1-38 (342)
No 1
>KOG1238|consensus
Probab=100.00 E-value=4.6e-90 Score=680.03 Aligned_cols=497 Identities=39% Similarity=0.587 Sum_probs=444.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCCCCccCCccccccCCccccceecccccCcccCCCCceee
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIK 86 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
...+||+||||||.|||++|.+|+|.+..+|||||+|+........|.....+..+.++|.|.+.|+...+....+..+.
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~ 133 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY 133 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Confidence 45689999999999999999999998899999999999887777888777778888999999999999999999999999
Q ss_pred eecCcccchhhhhcCceeecCChhhHHHHHHcCCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccCCCCCc
Q psy1059 87 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 166 (512)
Q Consensus 87 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (512)
|+||+++||+|.+|+|+|.|++..||+.|++.++++|+|+++.+||+++|....+.... .++|+..|++.+....+.
T Consensus 134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~-~~y~~~~g~~~ve~~~~~-- 210 (623)
T KOG1238|consen 134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL-TPYHGAGGPLLVEAGVYP-- 210 (623)
T ss_pred cCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc-CcccccCCcceecccccc--
Confidence 99999999999999999999999999999999999999999999999999988766554 458999999999888888
Q ss_pred chHHHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEec-CCCe
Q psy1059 167 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNV 245 (512)
Q Consensus 167 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~-~~~~ 245 (512)
.+....+.++.++.|.+.. |+++.. ..|+.....+..++.|+++..+|+.++...++|+.+..++.|++|.+| .+.+
T Consensus 211 ~~~~~~~~~ag~e~G~~~~-D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~ 288 (623)
T KOG1238|consen 211 NNLFTAFHRAGTEIGGSIF-DRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKR 288 (623)
T ss_pred CchhhHhHHhHHhcCCCcc-CCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCce
Confidence 8899999999999996555 999999 999999999999999999999999998833889999999999999998 6789
Q ss_pred EEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccc-cccccccccCCCcceEEecCC
Q psy1059 246 ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAP 324 (512)
Q Consensus 246 v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~~~~~~~~~ 324 (512)
+.||++....|++++++|+|+|||||||++||+|||+|||||.++|++.||+++.++| ||+||+||+..+ +.+.+..+
T Consensus 289 a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~ 367 (623)
T KOG1238|consen 289 AKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNP 367 (623)
T ss_pred EEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCC
Confidence 9999999823799999999999999999999999999999999999999999999999 999999999996 54444443
Q ss_pred c---ccccccHHHHHHHhhcCCCCCCCcccceEEEEEecCCCC---CCCCeEEEEecccc--------------------
Q psy1059 325 L---KRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNT---ARPDLEIHLLYFQQ-------------------- 378 (512)
Q Consensus 325 ~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~-------------------- 378 (512)
. .........+.+|+....||+...+ .+..+|++..... ++||+++++.....
T Consensus 368 ~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 446 (623)
T KOG1238|consen 368 VELSLIRLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALF 446 (623)
T ss_pred ccccccccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhh
Confidence 1 1222335678899999999998765 6788998877653 77888877644321
Q ss_pred ----------------------------------chhhHHH------HHHHHHHHHHHHHHhcchhHHHhcccccccCCc
Q psy1059 379 ----------------------------------NDIRNMY------LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLE 418 (512)
Q Consensus 379 ----------------------------------~~~~~~y------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (512)
+.++++| ++.++++++.+.++.++++|++++..++..++|
T Consensus 447 ~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~ 526 (623)
T KOG1238|consen 447 GELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVP 526 (623)
T ss_pred hhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCC
Confidence 1122335 899999999999999999999999999988999
Q ss_pred cCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHH
Q psy1059 419 ACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGE 498 (512)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~ 498 (512)
+|......++++|+||+|.+..+.||++|||+||+..|+++|||+++||||++||||+|+|+||.+|++||.+|+++|||
T Consensus 527 ~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIge 606 (623)
T KOG1238|consen 527 GCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGE 606 (623)
T ss_pred CcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q psy1059 499 KCADLVKTSYNI 510 (512)
Q Consensus 499 r~a~~i~~~~~~ 510 (512)
|+|+.|+++|..
T Consensus 607 k~ad~Ik~~~~~ 618 (623)
T KOG1238|consen 607 KAADMIKEEWLA 618 (623)
T ss_pred HHHHHHHHHhhh
Confidence 999999999854
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2.9e-76 Score=614.67 Aligned_cols=479 Identities=32% Similarity=0.512 Sum_probs=366.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC---CCCCccCCccccc-cCCccccceecccccCcccCCCCc
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVL-SLSEFDHAYLAEPSQFAGLGVRNA 83 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (512)
..+|||||||||++|+++|.+||+.+|++|||||+|+.. ......|...... ....++|.|.+.|++. ..++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence 457999999999999999999999449999999999753 1222233322111 2234678888877763 4566
Q ss_pred eeeeecCcccchhhhhcCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccC-
Q psy1059 84 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF- 161 (512)
Q Consensus 84 ~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~- 161 (512)
.+.+.+|++|||+|.+|++++.|+.+.||+.|+.. +..+|+|++++|||+++|++.... ...++..|++.+...
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~----~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGK 154 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC----ccccCCCCCEEEeCCC
Confidence 78899999999999999999999999999999886 788999999999999999887321 345778899888754
Q ss_pred CCCCcchHHHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEec
Q psy1059 162 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 241 (512)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~ 241 (512)
... .+..+.+.++++++|++...+.++.. ..|++.+...|..+.|.++..+||.++. ++.|++|++++.|++|+++
T Consensus 155 ~~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~-~~~nl~i~~~a~V~rI~~~ 230 (560)
T PRK02106 155 PGT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE 230 (560)
T ss_pred CCC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhcccc-CCCCcEEEcCCEEEEEEEe
Confidence 334 67788999999999998877788776 7788777778889999999999999888 7899999999999999999
Q ss_pred CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccc-cccccccccCCCcceEE
Q psy1059 242 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMA 320 (512)
Q Consensus 242 ~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~~~~~ 320 (512)
+++++||++.+..++...+.+ |+||||||+++||+||++|||||+++|++.||+++.++| ||+||+||+.+. +.+.
T Consensus 231 -~~~a~GV~~~~~~~~~~~~~a-k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~ 307 (560)
T PRK02106 231 -GKRAVGVEYERGGGRETARAR-REVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYE 307 (560)
T ss_pred -CCeEEEEEEEeCCcEEEEEee-eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEE
Confidence 889999999884333334455 589999999999999999999999999999999999999 999999999985 7777
Q ss_pred ecCCcc--cc--cc-cHHHHHHHhhcCCCCCCCcccceEEEEEecCCCCCCCCeEEE----------------------E
Q psy1059 321 FSAPLK--RT--VY-SQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIH----------------------L 373 (512)
Q Consensus 321 ~~~~~~--~~--~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------------------~ 373 (512)
++.... .. .. ......+|.....|++.... ....+|.........|++++. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (560)
T PRK02106 308 CKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHV 386 (560)
T ss_pred eCCCcccccccchhhhhHHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeEEEEE
Confidence 765421 10 11 11123455555555543211 111122211100001111000 0
Q ss_pred ---eccc-------------cchhhHHH------HHHHHHHHHHHHHHhcchhHHHhcccccccCCccCCCCCCCCHHHH
Q psy1059 374 ---LYFQ-------------QNDIRNMY------LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSW 431 (512)
Q Consensus 374 ---~~~~-------------~~~~~~~y------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (512)
.+.+ .+.++.+| .+.+.++++++++++++..++.+...+. .|+ ....+++++
T Consensus 387 ~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~~~~~ 460 (560)
T PRK02106 387 GPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPG---ADVQTDEEI 460 (560)
T ss_pred EecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCC---cccCCHHHH
Confidence 0000 01122334 8899999999999998777766543322 122 224678899
Q ss_pred HHHHHhhcCCCccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHHHHHHHHHhhcCC
Q psy1059 432 TCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNI 510 (512)
Q Consensus 432 ~~~~~~~~~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~r~a~~i~~~~~~ 510 (512)
++|++....+.+|++||||||.++ +||||++|||||++||||+|+||||+++++||++|+||+|+|+|++|++++++
T Consensus 461 ~~~i~~~~~~~~H~~GTcrMG~d~--~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~~ 537 (560)
T PRK02106 461 DAFVREHAETAYHPSCTCKMGTDP--MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTPL 537 (560)
T ss_pred HHHHHhccCcCcccCCCeecCCCC--CeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCCC
Confidence 999999888999999999999854 69999999999999999999999999999999999999999999999998754
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.1e-75 Score=607.39 Aligned_cols=476 Identities=33% Similarity=0.475 Sum_probs=366.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC---CCCccCCcccc-ccCCccccceecccccCcccCCCCceeee
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP---IHSRIPGMSSV-LSLSEFDHAYLAEPSQFAGLGVRNARIKI 87 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
||||||||.+|+++|.+||++++.+|||||+|+... .....|..... .....++|.|.+.|++. ..++.+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999998337999999998532 22223322211 12234678888887763 56778899
Q ss_pred ecCcccchhhhhcCceeecCChhhHHHHHH-cCCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccCCCCCc
Q psy1059 88 TAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 166 (512)
Q Consensus 88 ~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~-~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (512)
.+|++|||+|.+|++++.|+++.||+.|+. .+.++|+|++++|||+++|..+... .+.|+..|++.+...+..
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~-- 150 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPAD-- 150 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCC--
Confidence 999999999999999999999999999987 6888999999999999999887432 356888999988876655
Q ss_pred chHHHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeE
Q psy1059 167 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 246 (512)
Q Consensus 167 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v 246 (512)
.+..+.+.++++++|++..++.++.. ..+++.+...|..+.|.++..+||.++. ++.|++|+++++|++|+++ ++++
T Consensus 151 ~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~-~r~nl~i~~~~~V~rI~~~-~~ra 227 (532)
T TIGR01810 151 NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAM-KRPNLEVQTRAFVTKINFE-GNRA 227 (532)
T ss_pred CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhc-cCCCeEEEeCCEEEEEEec-CCeE
Confidence 67888999999999999887787766 6777777777888999999999998887 7899999999999999998 8999
Q ss_pred EEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccc-cccccccccCCCcceEEecCCc
Q psy1059 247 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPL 325 (512)
Q Consensus 247 ~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~~~~~~~~~~ 325 (512)
+||++.+ .++..++.+.|+||||||+++||+||++|||||+++|++.||+++.++| ||+||+||+.+. +.+.++...
T Consensus 228 ~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~ 305 (532)
T TIGR01810 228 TGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPV 305 (532)
T ss_pred EEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCc
Confidence 9999987 4444445444689999999999999999999999999999999999999 999999999985 877776541
Q ss_pred -cccc----ccHHHHHHHhhcCCCCCCCcccceEEEEEecCCCCCCCCeEEE----------------------E---ec
Q psy1059 326 -KRTV----YSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIH----------------------L---LY 375 (512)
Q Consensus 326 -~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------------------~---~~ 375 (512)
.... .......+|.....|++... .....+|.+.......|++++. . .+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 384 (532)
T TIGR01810 306 SLYPSLNWLKQPFIGAQWLFGRKGAGASN-HFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYS 384 (532)
T ss_pred ccccccchhhhhHHHHHHHhcCCCCcccc-ccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCC
Confidence 1111 01112234555555554321 1111122211100011111110 0 00
Q ss_pred ccc-------------chhhHHH------HHHHHHHHHHHHHHhcchhHHHhcccccccCCccCCCCCCCCHHHHHHHHH
Q psy1059 376 FQQ-------------NDIRNMY------LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIR 436 (512)
Q Consensus 376 ~~~-------------~~~~~~y------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
.++ +.++.+| .+.+.++++.+++++++.+++.+...+. .+.....+++++++|+|
T Consensus 385 ~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~p~~~~~~d~~~~~~ir 458 (532)
T TIGR01810 385 NSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI------SPGPEVQTDEEIDEFVR 458 (532)
T ss_pred CCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc------CCCCCCCCHHHHHHHHh
Confidence 000 1122234 8899999999999998777766532221 12233578999999999
Q ss_pred hhcCCCccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHHHHHHHHHhhcC
Q psy1059 437 HLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYN 509 (512)
Q Consensus 437 ~~~~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~r~a~~i~~~~~ 509 (512)
....+.+|++||||||++++++||||+++||||++||||||+||||+++++||++|+||+|+|+||+|+++..
T Consensus 459 ~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 531 (532)
T TIGR01810 459 RHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKKP 531 (532)
T ss_pred hhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccCC
Confidence 9989999999999999844467999999999999999999999999999999999999999999999998754
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-70 Score=559.00 Aligned_cols=481 Identities=32% Similarity=0.486 Sum_probs=374.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC-CCccCCccccccCC-ccccceecccccCcccCCCCc
Q psy1059 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HSRIPGMSSVLSLS-EFDHAYLAEPSQFAGLGVRNA 83 (512)
Q Consensus 6 ~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (512)
....+|||||||||.+|+++|.+|++. |++|+|||+|+.... ...+|..+.....+ ...|.|.+.++. ...++
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r 77 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGR 77 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCc
Confidence 346689999999999999999999965 999999999986433 44556555555555 688999998887 47788
Q ss_pred eeeeecCcccchhhhhcCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccCC
Q psy1059 84 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK 162 (512)
Q Consensus 84 ~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (512)
.+.|.++++|||+|.+|++++.|+.+.||+.|.+. |..+|.|++++|||+++|.............++..||+.+....
T Consensus 78 ~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~ 157 (542)
T COG2303 78 ELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPR 157 (542)
T ss_pred cccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCC
Confidence 89999999999999999999999999999999875 67999999999999999997654322103478889999888775
Q ss_pred CCCcchHHHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecC
Q psy1059 163 NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 242 (512)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~ 242 (512)
.. .+....+.++..++|++..+++++.. ..|++.+...+.+|.|+++..+||.++. +++|++|++++.|++|+++
T Consensus 158 ~~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~-~~~nl~v~t~a~v~ri~~~- 232 (542)
T COG2303 158 SP--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILLE- 232 (542)
T ss_pred Cc--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHh-cCCceEEecCCEEEEEEEE-
Confidence 55 78899999999999999988899888 7787777666669999999999999988 8999999999999999999
Q ss_pred CCeEEEEEEEecCC--eEEEEecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccc-cccccccccCCCcceE
Q psy1059 243 QNVATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVM 319 (512)
Q Consensus 243 ~~~v~GV~~~~~~g--~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~~~~ 319 (512)
+++++||++....+ .+..+.+ ++||||||+++||+||++||||+.+.+...++.++.++| ||+||+||.... +.+
T Consensus 233 ~~r~~gv~~~~~~~~~~~~~~a~-~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~ 310 (542)
T COG2303 233 GDRAVGVEVEIGDGGTIETAVAA-REVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAF 310 (542)
T ss_pred CCeeEEEEEEeCCCCceEEEecC-ceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hhe
Confidence 99999999987333 2344455 589999999999999999999999999999999999999 999999999985 766
Q ss_pred EecCCcccc---ccc--HHHHHHHhhcCCCCCCCcccceEEEEEecCCCCCCCCeEEEEeccc-----------------
Q psy1059 320 AFSAPLKRT---VYS--QEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQ----------------- 377 (512)
Q Consensus 320 ~~~~~~~~~---~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------------- 377 (512)
......... ... ......|...+.|+..... .. .+|.........|++++++....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~-~gf~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (542)
T COG2303 311 EATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNH-FE-GGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVG 388 (542)
T ss_pred eccCccccccccccccccccceeEEeecCCCccccc-cc-ccccccCccccCCCcccccccccccccccccCCccEEeec
Confidence 655542000 000 1111234444555544221 11 12333333323344433331100
Q ss_pred -------------------cchhhHHH------HHHHHHHHHHHHHHhcchhHHHhcccccccCCccCCCCCCCCHHHHH
Q psy1059 378 -------------------QNDIRNMY------LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWT 432 (512)
Q Consensus 378 -------------------~~~~~~~y------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (512)
.+.++.+| .+.+..+++..+++..+..+...-..+. .+.....+++++.
T Consensus 389 ~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~------~~~~~~~~~~~~~ 462 (542)
T COG2303 389 PMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL------APGPRVTTDEDIS 462 (542)
T ss_pred cCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh------cCCCccccHHHHH
Confidence 01223333 5788888999999887554443322221 2234467788999
Q ss_pred HHHHhhcCCCccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHHHHHHHHHhh
Q psy1059 433 CYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 507 (512)
Q Consensus 433 ~~~~~~~~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~r~a~~i~~~ 507 (512)
+|++....+.+|++||||||.|| .++|+|++|||||++||||+|+|+||+++++||++||+|||+|+|++|+++
T Consensus 463 ~~~~~~~~t~~H~~GT~rMG~Dp-~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 463 AAIRFLARTAYHPMGTCRMGSDP-AAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHHHhccCccccccccccCCCCc-hhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 99999999999999999999887 457777999999999999999999999999999999999999999999974
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=5.2e-65 Score=524.43 Aligned_cols=447 Identities=23% Similarity=0.309 Sum_probs=314.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCCCCccCCccccccCCccccceecccccCcccCCCCceeee
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKI 87 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
...|||||||+|.+||++|.+|++ +.+|||||+|+.......+.. ...+.....+|.|.+.++. ...++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~----~~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQA----FISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCcccccc----ccCCCceec
Confidence 457999999999999999999998 589999999985311111111 1111223457888877775 345677899
Q ss_pred ecCcccchhhhhcCceeecCChhhHHHHHHcCCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccCCCCCcc
Q psy1059 88 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENN 167 (512)
Q Consensus 88 ~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (512)
.+|++|||+|.+|+++|.|+++.+|+. .+|+|+.+.++|++.|+.... .+.. .
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-------------------~~~~--~ 178 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-------------------WPKV--A 178 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-------------------CCCc--C
Confidence 999999999999999999999999853 689999999999999875310 0112 5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCc--ccceeecccc-cCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCC-
Q psy1059 168 IIREIFETSAQELGYPCPKDMNDRYV--DVGFAELPGM-TRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ- 243 (512)
Q Consensus 168 ~~~~~~~~~~~~~G~~~~~~~~~~~~--~~g~~~~~~~-~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~- 243 (512)
++...+.+++.++|++. +++... ..|....... ...+.|.++.. ++ +.. .+.|++|++++.|++|+++++
T Consensus 179 ~~~~~~~~a~~e~G~~~---~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~-~~~nl~Vl~~a~V~rIl~~~~~ 252 (587)
T PLN02785 179 PWQAALRDSLLEVGVSP---FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAG-NPNKLRVLLHATVQKIVFDTSG 252 (587)
T ss_pred hHHHHHHHHHHHcCCCc---cCCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhc-CCCCeEEEeCCEEEEEEEcCCC
Confidence 67789999999999863 222110 1121111111 14577887764 44 455 688999999999999999821
Q ss_pred --CeEEEEEEEecCCeEEEE----ecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccc-cccccccccCCCc
Q psy1059 244 --NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTG 316 (512)
Q Consensus 244 --~~v~GV~~~~~~g~~~~v----~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~ 316 (512)
++++||++.+.+|+.+++ +++|+||||||+++||+||++|||||+++|+++||+++.++| ||+||+||+...
T Consensus 253 ~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~- 331 (587)
T PLN02785 253 KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS- 331 (587)
T ss_pred CCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-
Confidence 389999998755654443 255799999999999999999999999999999999999999 999999999985
Q ss_pred ceEEecCCcccccccHHHH---HHHhhc-------------CCCCCCC--------------------------------
Q psy1059 317 PVMAFSAPLKRTVYSQEMV---FKYLVN-------------RIGPLSN-------------------------------- 348 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~g~~~~-------------------------------- 348 (512)
+.+..+............. ..|... ..+++..
T Consensus 332 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (587)
T PLN02785 332 IFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEA 411 (587)
T ss_pred eEEEeCCCchhhhHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccc
Confidence 7666543311000000000 000000 0000000
Q ss_pred -cccceE--------EEEEec--CCCCCCCCeEEEEeccccchhhHHHHHHHHHHHHHHHHHhcchhHHHhccccccc--
Q psy1059 349 -AGLWSF--------TGYIDT--LQNTARPDLEIHLLYFQQNDIRNMYLATLIRGTDYITRLEQTEAIRLAGGTLMSL-- 415 (512)
Q Consensus 349 -~~~~~~--------~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 415 (512)
.+...+ .+.+.. ....+.|.+.+.++..+.| ++.++++++.+++++++..++.+......+
T Consensus 412 ~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~D------l~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~ 485 (587)
T PLN02785 412 FNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQD------LQRCVYGIRTIEKIVKTNHFTNFTQCDKQTME 485 (587)
T ss_pred cccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHH------HHHHHHHHHHHHHHHcChhhhhhccccccccc
Confidence 000000 000000 0011344554444433222 889999999999999988887765321110
Q ss_pred CCcc---------CCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCC
Q psy1059 416 NLEA---------CSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII 486 (512)
Q Consensus 416 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~ 486 (512)
.+.+ .+. ...++++|++|+|.+..+.+|++|||+|| +|||+++||||++||||||+|+||.+|+
T Consensus 486 ~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~ 558 (587)
T PLN02785 486 KVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPG 558 (587)
T ss_pred cccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCC
Confidence 0000 011 13577899999999999999999999999 6999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhc
Q psy1059 487 TQSDAISYMIGEKCADLVKTSY 508 (512)
Q Consensus 487 ~np~lTi~ala~r~a~~i~~~~ 508 (512)
+||++|+||+|+|+|++|++++
T Consensus 559 ~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 559 TNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2e-49 Score=400.12 Aligned_cols=434 Identities=16% Similarity=0.187 Sum_probs=257.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCCCCccCCcccccc--CCc-------------------------
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLS--LSE------------------------- 63 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~--~~~------------------------- 63 (512)
|||||||+|++|+++|+.|+++ |++|+|||++...... .........+ ..+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFL-KIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIP 78 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCC-cccccccccccccccHHHHHHHHhhhccccccccccCCcC
Confidence 7999999999999999999998 9999999999876411 0001000000 000
Q ss_pred ----cccceecccccC-cccC-----CCCce-eeeecCcccchhhhhcCceeecCChhhHHHHHHcCCCCC--ChhhHHH
Q psy1059 64 ----FDHAYLAEPSQF-AGLG-----VRNAR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW--GYDETLK 130 (512)
Q Consensus 64 ----~~~~~~~~~~~~-~~~~-----~~~~~-~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w--~~~~l~~ 130 (512)
-.|.-. |... ...+ ....+ ....+.+.+||+|.+|++.+.|+++++. .| .+ .+| +|++++|
T Consensus 79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~P 152 (544)
T TIGR02462 79 TLDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDR 152 (544)
T ss_pred CCCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHH
Confidence 001100 0000 0000 00001 1123568899999999999999999642 12 22 588 9999999
Q ss_pred HHHHhccCcCCCcCCCCCCCCCCCceeeccCCCCCcchHHHHHHHHHHHcCC-CCCCCCCCCCcccceeecccccCCCee
Q psy1059 131 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-PCPKDMNDRYVDVGFAELPGMTRYGLR 209 (512)
Q Consensus 131 ~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~g~~~~~~~~~~~~r 209 (512)
||.++|++++..... ... +.. .....+.+.+.+. |. ... .. ...+..+ .|..+.+
T Consensus 153 yY~~Ae~~~gv~g~~------------~~~-~~~-~~~~~~~~~~~~~--g~~~~~---~~---PlA~~~~--~c~~~ak 208 (544)
T TIGR02462 153 LYTKAESLIGTSTDQ------------FDE-SIR-HNLVLRKLQDEYK--GQRDFQ---PL---PLACHRR--TDPTYVE 208 (544)
T ss_pred HHHHHHHHhCCCCCc------------CCC-ccc-chhHHHHHHHHhc--cccccc---cC---chhhhcc--CCCccce
Confidence 999999998654210 000 000 0122233333332 22 111 01 1111111 3444556
Q ss_pred cchhhhhhhcccC---CCCCEEEEcCcEEEEEEec-CC-CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 210 FSAADAYLTPIAG---KRTNLYVLKRSKVTKVIIN-DQ-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 210 ~~~~~~~l~~~~~---~~~g~~v~~~~~V~~i~~~-~~-~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
+++....+..+.. ++.|++|++++.|++|+.+ ++ ++|++|++.+. +|+.++++|+ .||||||+++||+||++|
T Consensus 209 ~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 209 WHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNS 287 (544)
T ss_pred ecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhC
Confidence 6543333433330 3788999999999999997 33 58999999986 6888899998 799999999999999999
Q ss_pred CCCChhhhccCCCCcccccc-cccccccccCCCcceEEecCCc---cccc-c-----cH---HHHHHHhhc---------
Q psy1059 284 GIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPL---KRTV-Y-----SQ---EMVFKYLVN--------- 341 (512)
Q Consensus 284 gig~~~~l~~~gi~~~~~~~-vG~~l~dh~~~~~~~~~~~~~~---~~~~-~-----~~---~~~~~~~~~--------- 341 (512)
+++... .+.|+.+.+... ||+||+||+... +.+.++.+. +... . .. .....+..+
T Consensus 288 ~~~~~~--~p~gl~Nss~~g~VGRnlmdh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 364 (544)
T TIGR02462 288 GFGQLG--RPDPTNPPPLLPSLGRYITEQSMTF-CQIVLSTELVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRDP 364 (544)
T ss_pred CCCCCc--CCCCcCCCCCCCCCCcchhcCCCcc-EEEEecchhhhhccCCccccccccccchhhhccccCCccccccccc
Confidence 987422 244555543235 999999999884 766665431 1100 0 00 000000000
Q ss_pred ---CCC------CCCC--------ccc----------ceEEEEEecCCC------------C--CCCCeEEEEeccccch
Q psy1059 342 ---RIG------PLSN--------AGL----------WSFTGYIDTLQN------------T--ARPDLEIHLLYFQQND 380 (512)
Q Consensus 342 ---~~g------~~~~--------~~~----------~~~~~~~~~~~~------------~--~~p~~~~~~~~~~~~~ 380 (512)
... ||.. ++. ..+..+....+. + +.|...+.+...+.
T Consensus 365 ~~~~~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~-- 442 (544)
T TIGR02462 365 EPQVTTPFTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAA-- 442 (544)
T ss_pred CcccccccccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHH--
Confidence 000 0100 000 000001110000 0 22333333322211
Q ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHhcccccccCCccCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCc
Q psy1059 381 IRNMYLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 460 (512)
Q Consensus 381 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~Mg~~~~~~~V 460 (512)
+ .+.+..+.+.+.++++ .+|..... ..+. + .....+.|++||||||.++ .+||
T Consensus 443 -d---~~~~~~~~~~~~~i~~-----~~G~~~~~-~~~~--------------~--~~~~~~~H~~Gt~rMG~dp-~~sV 495 (544)
T TIGR02462 443 -D---SKRARRMMTDMCNVAA-----KIGGYLPG-SLPQ--------------F--MEPGLALHLAGTTRIGFDE-QTTV 495 (544)
T ss_pred -H---HHHHHHHHHHHHHHHH-----HcCCCccc-cccc--------------c--cCCCccccCCCCeecCCCC-CCce
Confidence 1 4555555555555543 45532210 0000 0 0124688999999999987 5799
Q ss_pred cCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHHHHHHHHHhhcC
Q psy1059 461 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYN 509 (512)
Q Consensus 461 vD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~r~a~~i~~~~~ 509 (512)
||+++||||++||||+|+|+||+.+++||++|+||||+|+|++|+++++
T Consensus 496 vd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 496 ANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred ECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998874
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=3.7e-49 Score=381.10 Aligned_cols=290 Identities=41% Similarity=0.624 Sum_probs=228.6
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCCCCccC-CccccccCCccccceecccccCcccCCCCceeeeec
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP-GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA 89 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (512)
|||||||||++|+++|.+||++++.+|||||+|+........+ ..........+.|.+...++. ...++.+.+.+
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence 8999999999999999999998447999999999865433211 112223344567777777766 36777888889
Q ss_pred CcccchhhhhcCceeecCChhhHHHHHHc-CCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceee-ccCCCCCcc
Q psy1059 90 GKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPV-GLFKNKENN 167 (512)
Q Consensus 90 g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 167 (512)
+++|||+|.+|++++.|+++.+|+.|... +..+|+|+++++||+++|....+. ...++..+++.+ ...... .
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~--~ 150 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYP--S 150 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCH--C
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCC--C
Confidence 99999999999999999999999999985 677899999999999999887655 456777788888 333344 5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEec-CCCeE
Q psy1059 168 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVA 246 (512)
Q Consensus 168 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~-~~~~v 246 (512)
+....+.++++++|++...+.+... ..|++.....|..+.|.++..+||.+++ ++.|++|+++|+|++|+++ +++++
T Consensus 151 ~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a 228 (296)
T PF00732_consen 151 PMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGRA 228 (296)
T ss_dssp THHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHT-TTTTEEEEESEEEEEEEEETTSTEE
T ss_pred HHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcccchhh-ccCCccEEcCcEEEEEeeeccccce
Confidence 7778899999999998655666666 6676665556899999999999999998 8889999999999999886 68899
Q ss_pred EEEEEEecCCe--EEEEecCcEEEEcCCchhcHHHHHHcCCCChhhhccCCCCcccccccccccccccC
Q psy1059 247 TGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQ 313 (512)
Q Consensus 247 ~GV~~~~~~g~--~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~~l~~~gi~~~~~~~vG~~l~dh~~ 313 (512)
+||++.+.++. ...+.+ |+||||||+++||+||++||||+.++|++.||+++.++|||+||+||+.
T Consensus 229 ~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 229 TGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp EEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--EE
T ss_pred eeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhcccC
Confidence 99999996554 344555 5899999999999999999999999999999999999999999999984
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.94 E-value=3.2e-27 Score=202.32 Aligned_cols=129 Identities=28% Similarity=0.423 Sum_probs=99.6
Q ss_pred CCCCCeEEEEeccccchhhHHHHHHHHHHHHHHHHHhcchhHHHhcccccc-cCCccCCCCCCCCHHHHHHHHHhhcCCC
Q psy1059 364 TARPDLEIHLLYFQQNDIRNMYLATLIRGTDYITRLEQTEAIRLAGGTLMS-LNLEACSQYPWRSTHSWTCYIRHLTTTT 442 (512)
Q Consensus 364 ~~~p~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (512)
.+.|.+.+.+...+.| .+.+.++++.++++++.. +++++..... ...+.+......+++++++|++....+.
T Consensus 15 ~~~p~i~~~y~~~~~D------~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (144)
T PF05199_consen 15 FGQPLIDPNYLSDPRD------LEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECYIRQNVGTS 87 (144)
T ss_dssp TSEEEEE--TTSSHHH------HHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHHHHHHGEEC
T ss_pred CCCcEEEeCCCCCHHH------HHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhheeecccee
Confidence 3567777766654433 889999999999999877 6666533222 1223334445678889999999998999
Q ss_pred ccccccccccCCCCCCCccCCCCeEeccCCcEEEeeccCCCCCCCCchHHHHHHHHHH
Q psy1059 443 SNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKC 500 (512)
Q Consensus 443 ~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~Sv~P~~~~~np~lTi~ala~r~ 500 (512)
+|++||||||.+++. +|||++|||||++||||+|+|+||+.+++||++|+||||+|+
T Consensus 88 ~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 88 WHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp SS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 999999999999865 999999999999999999999999999999999999999996
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.57 E-value=1e-13 Score=144.78 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=52.6
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL 282 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~~ 282 (512)
|.... ++.|++|+++++|++|+.+++++|+||.+.. +|+..+++|+|.||||+|+|.. +.++.+
T Consensus 219 l~~~~-~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 219 LRLAL-KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHH-HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 44455 6789999999999999997468999999876 7778889998789999999985 555543
No 10
>PRK07121 hypothetical protein; Validated
Probab=99.57 E-value=9.5e-14 Score=143.34 Aligned_cols=63 Identities=30% Similarity=0.439 Sum_probs=49.6
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~ 281 (512)
|...+ ++.|++|+++++|++|+.+++++++||++.+ +++...++|+|.||||+|++.. +.++.
T Consensus 183 L~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRA-AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 44444 5789999999999999987357999999976 6667789994489999999985 44443
No 11
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=143.43 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=48.3
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcH-HHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA-QLLL 281 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~-~lL~ 281 (512)
++.|++|+++++|++|+.+ +++|+||.+.. +|++..+.|+|.||||+|+|+.. .++.
T Consensus 228 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 228 LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 5689999999999999987 78999998876 67777888977899999999864 4443
No 12
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.55 E-value=1.9e-13 Score=141.23 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=51.8
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHHH
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL 282 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~~ 282 (512)
++..+. ++.|++|+++++|++|+.+ +++|+||++.. +|+..+++|+|.||||+|+++. +.++.+
T Consensus 179 l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 179 FLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred HHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence 344444 4569999999999999998 89999999876 6878889998789999999975 555543
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.54 E-value=1.3e-13 Score=139.94 Aligned_cols=61 Identities=33% Similarity=0.460 Sum_probs=47.5
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
|...+ ++.+++|+.+++|++|+.+ +++|+||++.+. +|+.++|+|+ .||||+|++.. .++.
T Consensus 147 l~~~~-~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 147 LAKAA-EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHH-HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHHHH-hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 33334 5678999999999999998 889999999943 7888999998 89999999998 5544
No 14
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.54 E-value=1.9e-13 Score=140.40 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=53.1
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
|...+ ++.|++++++++|++|+.+ +++++||.+.+.+++...++++ .||||+|++.+++.+++.-.+
T Consensus 137 l~~~~-~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 137 LYRSA-ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHH-HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 33334 5779999999999999998 8899999986435666788996 799999999887766665444
No 15
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.54 E-value=2.1e-13 Score=140.79 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=47.2
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL 282 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~~ 282 (512)
++.|++++++++|++|+.+ +++|+||.+...+++..+++++ .||||+|++.. +.++.+
T Consensus 201 ~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHHH
Confidence 5679999999999999987 8899999987644566789997 79999999875 444443
No 16
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.9e-13 Score=142.34 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=51.2
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~ 281 (512)
|...+ ++.|++|+++++|++|+.+ +++|+||++.. +|+.++++|+|.||||+|++.. +.++.
T Consensus 214 l~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 214 MLEAA-LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHHH
Confidence 33444 5789999999999999998 89999999976 6877889997689999999986 44443
No 17
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=9.2e-13 Score=137.49 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=44.6
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
.+.|++++.++.+++|+.+ +|+|+||.+.+. +|+...++|+ .||||+|++.
T Consensus 147 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 4569999999999999998 899999998874 5666789996 8999999987
No 18
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.47 E-value=1.2e-12 Score=137.67 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=45.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|++++.++.+++|+.+++++|.||.+.+. +|+...+.|+ .||||+|++..
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 45799999999999999864679999998763 6877889996 79999999875
No 19
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=1.3e-12 Score=137.04 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|+++++++.|++|+.+++++|+||.+.+. +|+...+.|+ .||||+|+++.
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 46799999999999999873479999998653 6777889996 79999999875
No 20
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.47 E-value=1.2e-12 Score=136.21 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=49.5
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.+.|++++++++|++|..+ +++++||++.+. +|+..+|+|+ .||+|||+| +.+|+...|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcCC
Confidence 4789999999999999988 889999999764 4556689998 699999975 6777766553
No 21
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.46 E-value=1.5e-12 Score=131.63 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=43.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
++.|++|+++++|++|+.+ +++++||.+.+ +++..+++|+ .||||+|++..
T Consensus 140 ~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEcC-eEEEccCcccc
Confidence 4569999999999999988 78999988765 5666679996 79999999764
No 22
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=1.8e-12 Score=135.70 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|+++++++.|++|+.+++++|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 46799999999999999853689999998653 6777789996 89999999874
No 23
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.45 E-value=2.1e-12 Score=131.69 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=48.4
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHH
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLL 280 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL 280 (512)
.|...+ ++.|++++++++|++|+.+++++++||++.+.+++...+.++ .||||+|++.. +.++
T Consensus 135 ~l~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 135 KLYKKA-KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHH-HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHHH
Confidence 344444 578999999999999998646799999998745555567886 79999999876 4443
No 24
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.44 E-value=1.9e-12 Score=136.06 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|++++.++.|++|+.+++++|.||.+.+. +|+...+.|+ .||||+|++..
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 46899999999999999832789999998653 6877889997 79999999864
No 25
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.44 E-value=4.5e-13 Score=133.05 Aligned_cols=60 Identities=33% Similarity=0.493 Sum_probs=45.8
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
|...+ ++.|++++++++|++|..+ +++++||++.+ | +++|+ .||+|+|+ ++++|+..+++
T Consensus 153 l~~~~-~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEA-QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHH-HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred hHHHH-HHhhhhccccccccchhhc-ccccccccccc--c---ccccc-eeEecccc-cceeeeecccc
Confidence 33444 4679999999999999999 89999998855 4 49998 69999997 57888887764
No 26
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.43 E-value=4.4e-12 Score=133.79 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=45.6
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
++.|+++++++.|++|+.+ +++|+||.+.+. +|+...+.|+ .||||+|++..
T Consensus 181 ~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 5689999999999999998 789999999864 5776789997 79999999875
No 27
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=4e-12 Score=132.61 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=51.7
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 282 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~ 282 (512)
|...+ ++.|++++++++|++|+.+ +++|+||.+.. +|+..+++|++.||||+|++.+.+-|+.
T Consensus 214 L~~~~-~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGL-QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHH-HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 33445 6789999999999999988 88999999876 6777889997679999999987555443
No 28
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=4.9e-12 Score=131.91 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=46.2
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhc
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~-~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
|...+ .+.|+++++++.|++|+.+++++|+||.+.+ .+|+...++|+ .||||+|++..
T Consensus 140 L~~~~-~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYL-IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHH-hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 33434 4689999999999999987344699998876 46777789996 79999999864
No 29
>PRK12839 hypothetical protein; Provisional
Probab=99.41 E-value=8.3e-12 Score=130.11 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=49.8
Q ss_pred CCCccccccccccCCCCCCCccCCCCeEeccCCcEEEee---ccCCC-C-CCCCchHHHHHHHHHHHHHHHhhcCC
Q psy1059 440 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPN-A-IITQSDAISYMIGEKCADLVKTSYNI 510 (512)
Q Consensus 440 ~~~~H~~Gt~~Mg~~~~~~~VvD~~~rv~g~~nl~V~D~---Sv~P~-~-~~~np~lTi~ala~r~a~~i~~~~~~ 510 (512)
....|-+|+++.-.+ .-|+|.++++ ++|||.++. +++-. . .+.+.....+..+..+++.+++.-+.
T Consensus 500 p~~~~T~GGl~in~~---~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~~ 570 (572)
T PRK12839 500 PGSFGTFAGLVADGK---SRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTGV 570 (572)
T ss_pred ccccccCCCccCCCC---ceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcccc
Confidence 456777888887654 4899999987 699999984 45532 2 24677888899999999999876654
No 30
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.40 E-value=7.7e-12 Score=130.60 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=43.8
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-C-------------CeEEEEecCcEEEEcCCchhc-HHHHH
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-------------GETVRVTANKEVILTAGAIAN-AQLLL 281 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~-------------g~~~~v~A~k~VVlaaGa~~t-~~lL~ 281 (512)
..++++++++++++|+.+ +++|+||++.+. + ++..+|.|+ .||||+|+|.. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~Ak-aVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQ-AVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecC-EEEEeCCCcccCHHHHH
Confidence 346999999999999998 899999997421 1 234678895 79999999985 55554
No 31
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=1.3e-11 Score=129.49 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=42.1
Q ss_pred CEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 226 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 226 g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+++++.++.+++|+.+++++|+||.+.+. +++...+.|+ .||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 48999999999999853689999999874 4666678896 89999999874
No 32
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=8.5e-12 Score=130.80 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=45.9
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
|...+ .+.|+++++++.|++|+.+ +++|.||.+.+. +|+...++|+ .||||+|++..
T Consensus 141 L~~~~-~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNL-RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHH-hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 33434 5679999999999999988 889999987542 5666679996 79999999864
No 33
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.38 E-value=1.3e-11 Score=128.23 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=44.3
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec----CCeEEEEecCcEEEEcCCchhc
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~----~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.|...+ ++.++++++++.|++|+.+++++|+||.+.+. .+....++|+ .||+|+|++..
T Consensus 149 ~L~~~~-~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~ 211 (541)
T PRK07804 149 ALDAAV-RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ 211 (541)
T ss_pred HHHHHH-HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence 344444 56789999999999999873479999998731 2334578996 79999999763
No 34
>PLN02815 L-aspartate oxidase
Probab=99.38 E-value=1.1e-11 Score=129.16 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=43.0
Q ss_pred CCCCEEEEcCcEEEEEEec-CCC--eEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIIN-DQN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~-~~~--~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+..|++|+.++.+++|+.+ +++ +|+||.+.+. +|+...+.|+ .||||+|+++.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 4569999999999999986 233 4899998653 6777788996 89999999863
No 35
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=1.4e-11 Score=129.13 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|++++.++.|++|+.+++++++||.+.+. +|+...+.|+ .||||+|++..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 46799999999999999863689999998653 5766788896 79999999864
No 36
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.38 E-value=2e-11 Score=128.16 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=46.2
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
++.|++|++++.|++|+.+ +++|+||.+.+ .+....+.++|.||||+|++....-+
T Consensus 225 ~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 225 LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHHH
Confidence 5789999999999999998 89999999887 34445688876899999999754443
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=1.9e-12 Score=122.80 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEE
Q psy1059 170 REIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV 249 (512)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV 249 (512)
.+.++.+++.+|++.... ..|..+|. ..+.+.....|...+ ++.|++|+++++|.+|..+ + .+.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~------~~Gr~Fp~-----sdkA~~Iv~~ll~~~-~~~gV~i~~~~~v~~v~~~-~---~~f 144 (408)
T COG2081 81 PEDFIDWVEGLGIALKEE------DLGRMFPD-----SDKASPIVDALLKEL-EALGVTIRTRSRVSSVEKD-D---SGF 144 (408)
T ss_pred HHHHHHHHHhcCCeeEEc------cCceecCC-----ccchHHHHHHHHHHH-HHcCcEEEecceEEeEEec-C---ceE
Confidence 467788888899875421 22322221 112333334444445 6899999999999999987 4 234
Q ss_pred EEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 250 EYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 250 ~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
.+...+|+ +|+++ .+|||+|+...|++
T Consensus 145 ~l~t~~g~--~i~~d-~lilAtGG~S~P~l 171 (408)
T COG2081 145 RLDTSSGE--TVKCD-SLILATGGKSWPKL 171 (408)
T ss_pred EEEcCCCC--EEEcc-EEEEecCCcCCCCC
Confidence 44443465 79998 59999998877743
No 38
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.37 E-value=7.6e-12 Score=122.69 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=47.8
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCCC
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 287 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~ 287 (512)
+++..+. ..|+++.++++|++|...++| ++-+.+. +|++. ++|+ .||.|||. .+.+|+.++|+.+
T Consensus 158 ~l~e~a~--~~g~~i~ln~eV~~i~~~~dg-~~~~~~~--~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 158 ALAEEAQ--ANGVELRLNTEVTGIEKQSDG-VFVLNTS--NGEET-LEAK-FVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHH--HcCCEEEecCeeeEEEEeCCc-eEEEEec--CCcEE-EEee-EEEECCch-hHHHHHHHhCCCc
Confidence 3443444 669999999999999987233 3333333 47655 9997 69999995 7899999999865
No 39
>PRK08275 putative oxidoreductase; Provisional
Probab=99.37 E-value=1.4e-11 Score=128.66 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=45.9
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
.|...+ ++.|++|+.++.|++|+.+++++++||.+.+. +|+...++|+ .||||+|++.
T Consensus 142 ~L~~~~-~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQL-KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHH-HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 344444 56899999999999999863578999987653 5766778996 7999999975
No 40
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.36 E-value=2.2e-11 Score=128.01 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
..|++++.++.|++|+.+ +++++||.+.+. +|+...++|+ .||||+|++.
T Consensus 145 ~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 145 ALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred cCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 346999999999999988 789999986542 5666689997 7999999986
No 41
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.36 E-value=1.2e-11 Score=128.44 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=43.5
Q ss_pred CCCCEEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~-~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
++.|++|++++.|++|+.+ ++++|+||.+.+ +|....+.|+ .||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcC-EEEEcCCCCcc
Confidence 4569999999999999987 248999998876 6777778996 79999999753
No 42
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=2.9e-11 Score=126.70 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=50.2
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc-HHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t-~~lL~ 281 (512)
|...+ ++.|+++++++.|++|+.+ +++|+||.+.. +|+.+++.|++.||||+|++.. +.++.
T Consensus 227 L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSL-RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence 33444 5789999999999999988 89999999876 6777788886689999999986 44443
No 43
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.36 E-value=2e-11 Score=127.43 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=44.4
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+..|++++.++.|++|+.+ +++|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 4468999999999999998 889999987653 6777789996 89999999864
No 44
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.35 E-value=1.7e-11 Score=129.71 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|++++.++.|++|+.+ +++|.||.+.+. +|+...+.|+ .||||+|++..
T Consensus 169 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 5689999999999999998 899999999863 6877889996 79999999864
No 45
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.35 E-value=3.6e-11 Score=126.16 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
++.|++|+++++|++|+.+ +++++||.+.+ +++..+++|+|.||||+|++....-+
T Consensus 228 ~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 228 EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 5789999999999999988 89999999876 45556789944899999999764444
No 46
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.35 E-value=2.6e-11 Score=126.96 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=43.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+..|+++++++.|++|+.+ ++++.||.+.+. +|+...++|+ .||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 4468999999999999998 899999987643 6767789996 89999999763
No 47
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.35 E-value=2.7e-11 Score=124.77 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
..|+++++++.|++|+.+ +++++||.+.+ .+....++|+ .||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE-TGRVVGVWVWN-RETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc-CCEEEEEEEEE-CCcEEEEEcC-EEEECCCcccC
Confidence 379999999999999988 78999999887 3555678997 79999999864
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.35 E-value=1.8e-11 Score=128.61 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.+.|++++.++.|++|+.+ +++|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 140 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 4569999999999999998 899999998653 5766789996 89999999863
No 49
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.35 E-value=3.3e-11 Score=135.41 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=45.2
Q ss_pred CCCEEEEcCcEEEEEEecC-----C---CeEEEEEEEec---CCeEEEEecCcEEEEcCCchhcHH
Q psy1059 224 RTNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQ 278 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~-----~---~~v~GV~~~~~---~g~~~~v~A~k~VVlaaGa~~t~~ 278 (512)
+.|++|+++++|++|+.++ + ++|+||.+.+. +|+...+.|+ .||||+|+|....
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 3699999999999999872 1 38999999874 5777889995 8999999998753
No 50
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2e-11 Score=128.25 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=43.3
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
+..|++++.++.|++|+.+ +++++||.+.+. +|+...++|+ .||||+|++.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence 3479999999999999988 889999988653 5666678997 7999999985
No 51
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2.3e-11 Score=128.31 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=41.5
Q ss_pred EEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 227 LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 227 ~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
++++.++.|++|+.+ ++++.||.+.+. +|+...+.|+ .||||+|+++.
T Consensus 166 v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 999999999999988 889999987653 5777789997 79999999764
No 52
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.33 E-value=3e-11 Score=124.65 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=43.6
Q ss_pred CCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 225 TNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 225 ~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.|++++.++.|++|+.+ ++++.||.+.+.+|+...++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 68999999999999988 8899999987755666788997 79999999864
No 53
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.33 E-value=5.5e-12 Score=126.14 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=59.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcCCCChh---hhccCCCCc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA---HLDEVKIPV 298 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~~~---~l~~~gi~~ 298 (512)
...|.++++.++|+.++.+ ++ +.||++.|. +|+++.++|+ .||-|||.| +-+++...+..+.. .-...|++.
T Consensus 175 ~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW-~d~i~~~~~~~~~~~~~vr~skGsHl 250 (532)
T COG0578 175 AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPW-VDEILEMAGLEQSPHIGVRPSKGSHL 250 (532)
T ss_pred Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcC-EEEECCCcc-HHHHHHhhcccCCCCccceeccceEE
Confidence 4789999999999999999 77 999999997 7899999997 799999975 67888777654321 223355555
Q ss_pred cccc
Q psy1059 299 KQDL 302 (512)
Q Consensus 299 ~~~~ 302 (512)
+.+.
T Consensus 251 Vv~~ 254 (532)
T COG0578 251 VVDK 254 (532)
T ss_pred Eecc
Confidence 5543
No 54
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.32 E-value=4.8e-11 Score=124.05 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=44.1
Q ss_pred CCCCEEEEcCcEEEEEEecC-----CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~-----~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+.+|++|++++.|++|+.++ +++|+||.+.+. +|+...+.|+ .||||+|++..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 45699999999999999762 389999998764 5777789996 89999999863
No 55
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=6.7e-11 Score=124.16 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCC---CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQ---NVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~---~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.|...+ .+.|+++++++.|++|+.+++ ++|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 145 ~L~~~~-~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNC-VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHH-HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 344444 577999999999999998722 89999988642 5766788996 79999999863
No 56
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.31 E-value=4.9e-11 Score=125.20 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=43.8
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+.|+++++++.|++|+.+++++|+||.+.+. +|+...+.|+ .||||+|++..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 4689999999999999863579999999864 5666788997 79999999863
No 57
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.30 E-value=6.4e-11 Score=119.90 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+||||||+|+.|+++|++|+++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999974
No 58
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.28 E-value=7.2e-11 Score=121.97 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=42.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
+..|++++.++.|++|+.+ +++|+||.+.+ .++...+.|+ .||||+|++..
T Consensus 148 ~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCcC
Confidence 3459999999999999988 88999999876 4555678997 79999999863
No 59
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.28 E-value=1.3e-10 Score=121.15 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=42.7
Q ss_pred CCCCEEEEcCcEEEEEEecCC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~--~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
.+.+++++.++.|++|+.+++ ++|+||.+.+. +|+...+.|+ .||||+|++.
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 345679999999999998722 79999998653 6777789996 7999999985
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.27 E-value=1.4e-10 Score=118.02 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred CC--EEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 225 TN--LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 225 ~g--~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
.| ++|+++++|++|..+ ++....|.+. +| +++|+ .||+|||++ +.+|+.++|++
T Consensus 228 ~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 228 PGKKISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred cCCCEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcChh-HHHHHHHhCCC
Confidence 45 899999999999987 5655556543 35 59998 699999985 78899999875
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=127.62 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=43.0
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
..++++.+++.+.+|+.+ +++|+||.+.+. +|+...+.|+ .||||+|+++
T Consensus 155 ~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence 347999999999999988 889999998664 6887889996 8999999986
No 62
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.24 E-value=9.3e-12 Score=123.47 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEE
Q psy1059 171 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 250 (512)
Q Consensus 171 ~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~ 250 (512)
+.+.+.+++.|++.... ..|..++. . .+.......|...+ ++.|++|+++++|+.|+.+ ++.+..|+
T Consensus 80 ~d~~~ff~~~Gv~~~~~------~~gr~fP~-s----~~a~~Vv~~L~~~l-~~~gv~i~~~~~V~~i~~~-~~~~f~v~ 146 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIE------EDGRVFPK-S----DKASSVVDALLEEL-KRLGVEIHFNTRVKSIEKK-EDGVFGVK 146 (409)
T ss_dssp HHHHHHHHHTT--EEE-------STTEEEET-T------HHHHHHHHHHHH-HHHT-EEE-S--EEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHhcCCeEEEc------CCCEECCC-C----CcHHHHHHHHHHHH-HHcCCEEEeCCEeeeeeec-CCceeEee
Confidence 55667777888865311 11222221 1 12222223343444 5789999999999999998 77778887
Q ss_pred EEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 251 YVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 251 ~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
.. +++ .+.++ .||||+|+...|++
T Consensus 147 ~~--~~~--~~~a~-~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 147 TK--NGG--EYEAD-AVILATGGKSYPKT 170 (409)
T ss_dssp ET--TTE--EEEES-EEEE----SSSGGG
T ss_pred cc--Ccc--cccCC-EEEEecCCCCcccc
Confidence 72 243 79998 69999998776653
No 63
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.24 E-value=2.8e-10 Score=119.94 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=48.7
Q ss_pred CCCCEEEEcCcEEEEEEecC-CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcC
Q psy1059 223 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 284 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~-~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sg 284 (512)
++.|++++.+++|++|..++ ++++++|++.+. +|+.++++++ .||+|||+| +.+|+...+
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 57899999999999998863 478999998764 5666679997 699999985 677777664
No 64
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.22 E-value=1.9e-10 Score=116.29 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=42.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.+.|++++.+++|++|+.++++++.+|++.+ | +++++ .||+|||++. +.++...++
T Consensus 194 ~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~--g---~i~a~-~vVvaagg~~-~~l~~~~g~ 249 (407)
T TIGR01373 194 DRRGVDIIQNCEVTGFIRRDGGRVIGVETTR--G---FIGAK-KVGVAVAGHS-SVVAAMAGF 249 (407)
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC--c---eEECC-EEEECCChhh-HHHHHHcCC
Confidence 4789999999999999764256777776644 5 58998 5999999864 556655553
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=1.1e-10 Score=108.58 Aligned_cols=36 Identities=36% Similarity=0.408 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.+|||+|||+|++|+++|+.|+++ |++|+||||+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 479999999999999999999998 999999999873
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=1.3e-10 Score=108.52 Aligned_cols=36 Identities=33% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+|||||||+|++|+++|++|++. |++|+|||+..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 3479999999999999999999998 99999999976
No 67
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.20 E-value=1e-10 Score=119.75 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
+.++||||||+|++|+++|++|+++ +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4469999999999999999999986 6899999999863
No 68
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.20 E-value=4e-10 Score=114.42 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 284 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sg 284 (512)
++.|++|+++++|++|..+ ++++.+|+..+ + +++++ .||+|+|++ +..|+...|
T Consensus 212 ~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~--~---~~~a~-~VV~a~G~~-~~~l~~~~g 265 (416)
T PRK00711 212 EQLGVKFRFNTPVDGLLVE-GGRITGVQTGG--G---VITAD-AYVVALGSY-STALLKPLG 265 (416)
T ss_pred HHCCCEEEcCCEEEEEEec-CCEEEEEEeCC--c---EEeCC-EEEECCCcc-hHHHHHHhC
Confidence 5689999999999999887 77777775432 4 58897 699999985 456655433
No 69
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.20 E-value=2.1e-10 Score=115.23 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=43.3
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
|...+ ++.|++++++++|.++..+ ++.+ .|+.. +| +++++ .||+|+|+ .++.++...|+.
T Consensus 155 L~~~~-~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~--~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 155 MAELI-QARGGEIRLGAEVTALDEH-ANGV-VVRTT--QG---EYEAR-TLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHHH-HhCCCEEEcCCEEEEEEec-CCeE-EEEEC--CC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence 33444 5679999999999999877 5543 34432 34 58998 69999997 467788777754
No 70
>PLN02661 Putative thiazole synthesis
Probab=99.19 E-value=2.2e-10 Score=109.35 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=42.0
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEe------cCC----eEEEEecCcEEEEcCCch
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN------SKG----ETVRVTANKEVILTAGAI 274 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~------~~g----~~~~v~A~k~VVlaaGa~ 274 (512)
+..+. ++.|++++.++.|++|+.+ ++++.||.+.. ..+ +...++|+ .||+|+|.-
T Consensus 179 i~ka~-~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~ 243 (357)
T PLN02661 179 MSKLL-ARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHD 243 (357)
T ss_pred HHHHH-hcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCC
Confidence 33445 5689999999999999998 89999998632 111 23478997 799999953
No 71
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.3e-10 Score=100.60 Aligned_cols=35 Identities=37% Similarity=0.390 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+.||||||+|++|++||++||++ |+||+|+||.-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l 63 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL 63 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence 367999999999999999999999 99999999964
No 72
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-10 Score=113.56 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCC--cccceeecccccC-CCeecchhhh-hhhcccCCCCCEEEEcCcEEEEEEecCCC
Q psy1059 169 IREIFETSAQELGYPCPKDMNDRY--VDVGFAELPGMTR-YGLRFSAADA-YLTPIAGKRTNLYVLKRSKVTKVIINDQN 244 (512)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~~~~~~--~~~g~~~~~~~~~-~~~r~~~~~~-~l~~~~~~~~g~~v~~~~~V~~i~~~~~~ 244 (512)
.....++++...|++|..+..+.. ...|......-.. .+.--..... ++..+. +++|++|+.++.+.+|+.+ ++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~-~~p~I~v~e~~~a~~li~~-~~ 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVR-NRPNITVLEGAEALDLIIE-DG 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHh-cCCCcEEEecchhhhhhhc-CC
Confidence 345566777889998864443321 0111111111111 1111112223 333444 6799999999999999999 66
Q ss_pred -eEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy1059 245 -VATGVEYVNSKGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 245 -~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~ 275 (512)
.+.||.+.+.+++...++|+ .||||+|+++
T Consensus 166 ~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 166 IGVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred ceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 66699998843457789997 7999999863
No 73
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.18 E-value=4.9e-10 Score=114.68 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=39.8
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.|...+ ++.|++++.+ .|+.|+.+ +++++||.+ + ++ .++++ .||||+|++..
T Consensus 125 ~L~~~~-~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~--g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 125 ILYKHA-RELGVNFIRG-FAEELAIK-NGKAYGVFL-D--GE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHH-HhcCCEEEEe-EeEEEEee-CCEEEEEEE-C--CE--EEEeC-eEEECCCcCcC
Confidence 344444 5679999876 89999877 789999876 2 44 58887 79999999865
No 74
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.16 E-value=1.3e-10 Score=101.47 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.5
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec----CC---eEEEEecCcEEEEcCC
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAG 272 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~----~g---~~~~v~A~k~VVlaaG 272 (512)
.+..++ +.|++|+..+.|+.+.+.+++|+.||.+.-+ .| ....++|+ .||=|+|
T Consensus 102 L~s~a~--~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak-~ViDaTG 162 (230)
T PF01946_consen 102 LASKAI--DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAK-VVIDATG 162 (230)
T ss_dssp HHHHHH--TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEES-EEEE---
T ss_pred HHHHHh--cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEe-EEEeCCC
Confidence 344566 5999999999999999872489999998753 22 23689996 7888887
No 75
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.15 E-value=9.9e-10 Score=112.36 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
...+||||||||+.|+++|++|++. +|.+|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4569999999999999999999985 6899999999864
No 76
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.15 E-value=4.3e-10 Score=115.65 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCc---ccceeecccccCCCeecch--hhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeE
Q psy1059 172 IFETSAQELGYPCPKDMNDRYV---DVGFAELPGMTRYGLRFSA--ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 246 (512)
Q Consensus 172 ~~~~~~~~~G~~~~~~~~~~~~---~~g~~~~~~~~~~~~r~~~--~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v 246 (512)
..+..+++.|.++.....+... .-|... ...+..+.+... ......... +..+++++.+..|.+|+.++++.+
T Consensus 96 ~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~-~rt~~~~~~tG~~ll~~L~~~~~-~~~~~~~~~~~~~~~l~~~~~~~v 173 (562)
T COG1053 96 EAVDELEKWGVPFSRTEDGRIYQRRFGGHSK-PRTCFAADKTGHELLHTLYEQLL-KFSGIEIFDEYFVLDLLVDDGGGV 173 (562)
T ss_pred HHHHHHHHhCCCcccCCCccccccccCCcCC-CcceecCCCCcHHHHHHHHHHHH-HhhcchhhhhhhhhhheecCCCcE
Confidence 3345567788887654444221 111211 122333333221 122223333 446789999999999998834458
Q ss_pred EEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 247 TGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 247 ~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
.||...+. +|+...++++ .||+|+|+.+
T Consensus 174 ~Gvv~~~~~~g~~~~~~ak-avilaTGG~g 202 (562)
T COG1053 174 AGVVARDLRTGELYVFRAK-AVILATGGAG 202 (562)
T ss_pred EEEEEEEecCCcEEEEecC-cEEEccCCce
Confidence 99988776 6888888895 7999999987
No 77
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.14 E-value=6.2e-10 Score=113.74 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
++.|++++++++|++|..++++.+. |.+.+. +|+..+++|+ .||+|||++ +.+|+...|+.
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~-~VV~AAG~~-s~~La~~~Gi~ 250 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTR-FVFVGAGGG-ALPLLQKSGIP 250 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECC-EEEECCCcc-hHHHHHHcCCC
Confidence 4679999999999999876233332 333321 3544568998 699999975 68888888864
No 78
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.14 E-value=1.1e-09 Score=109.75 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999764
No 79
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.13 E-value=3.5e-09 Score=107.49 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
.++.+||||||+|++|+++|+.|++. |+.+|+||||-+.
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 46789999999999999999999987 7999999999443
No 80
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.13 E-value=4.7e-10 Score=102.96 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=47.0
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEe--c----CCe--------EEEEecCcEEEEcCCchhcHHHHH
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN--S----KGE--------TVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~--~----~g~--------~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
.+..+. .+..+++.+.++|.+|... +++++||.-.- + .|+ .++++|. .||+++|+++-.+-|.
T Consensus 158 ~~re~~-~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelV 234 (552)
T COG3573 158 RLREAQ-RRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELV 234 (552)
T ss_pred HHHHHH-hCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHH
Confidence 344444 5778999999999999999 99999987421 0 111 3688997 7999999997655544
Q ss_pred H
Q psy1059 282 L 282 (512)
Q Consensus 282 ~ 282 (512)
+
T Consensus 235 R 235 (552)
T COG3573 235 R 235 (552)
T ss_pred H
Confidence 3
No 81
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.12 E-value=9.6e-10 Score=113.61 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=42.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
.+.|++++.+++|++|..+ ++. .+|++.+. +|+..+++|+ .||+|+|+| +.+++.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCcc-HHHHHh
Confidence 4779999999999999877 554 46777653 4666789997 799999986 556654
No 82
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.11 E-value=7.3e-10 Score=110.38 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999863
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.10 E-value=9.5e-11 Score=118.55 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
|...+ .+.|++|++++.|..++.+ ++++++|.+.+..| ..+|+|+ .||-|+|- -.|+.++|+.
T Consensus 96 l~~~l-~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG~---g~l~~~aG~~ 158 (428)
T PF12831_consen 96 LDEML-AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRAK-VFIDATGD---GDLAALAGAP 158 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccc-cccccccccccccc-ccccccc-cccccccc---cccccccccc
Confidence 44444 5789999999999999999 99999999988444 7789997 79999993 5788888763
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.10 E-value=1.5e-09 Score=108.72 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|||+|||+|+.|+++|++|+++ |.+|+|||++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 68999999999999999999998 999999999863
No 85
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.09 E-value=1.7e-09 Score=111.96 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
.+.|++++.+++|++|..+ ++. .+|.+.+..|++.+++|+ .||.|+|+| +.+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence 4789999999999999887 553 567776644666789997 799999976 566655
No 86
>KOG4254|consensus
Probab=99.09 E-value=5.5e-09 Score=99.90 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=49.3
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcH-HHH
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA-QLL 280 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~-~lL 280 (512)
.+.+.+ ++.|.+|++++.|.+|+.| +|+++||.+.+ |+ ++++ |.||..|+-+.|= +||
T Consensus 269 aia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEe-eeeecCCchHHHHHHhC
Confidence 344556 7899999999999999999 89999999998 87 7888 4899999999886 444
No 87
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.07 E-value=6.2e-09 Score=108.21 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=45.8
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
|...+ ++.|++|+++++|++|..+ ++++++|++.+ |+ ++.|+ .||+|++...+-..|+
T Consensus 225 l~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLA-EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHH-HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhc
Confidence 43444 5779999999999999988 78888998765 65 57898 6999999777765554
No 88
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.05 E-value=2.8e-09 Score=108.46 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=45.1
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecC-CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~-~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
|...+ ++.|++|+++++|++|+.++ +++++||...+ ++ .+++++ .||||+|++...+-++
T Consensus 129 L~~~a-~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 129 LYSSA-ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHH-HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEcC-EEEEcCCCcccCHHHH
Confidence 43444 57899999999999998762 57899988744 22 478896 7999999998644333
No 89
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.01 E-value=1.1e-08 Score=99.64 Aligned_cols=61 Identities=28% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
++.|+++.++++|+.|... ++.-.-|.+.+. +|+..+++|+ -|++.||+ .+-.||++|||.
T Consensus 193 ~~~~~~~~~~~eV~~i~r~-~dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 193 KQKGFELHLNHEVTDIKRN-GDGRWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred hCCCcEEEecCEeCeeEEC-CCCCEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence 5679999999999999987 333334555553 6778899997 79999998 588999999984
No 90
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.99 E-value=1.7e-09 Score=109.60 Aligned_cols=36 Identities=50% Similarity=0.656 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++|||||||+|++|+++|+.|+++ |++|+||||++.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence 469999999999999999999998 999999999874
No 91
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.99 E-value=6.6e-09 Score=104.37 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=37.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
.++|||||||+|.+||++|..|+++ |+|||+||+.+..+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGG 41 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCc
Confidence 5689999999999999999999998 999999999988744
No 92
>KOG2820|consensus
Probab=98.99 E-value=9.2e-09 Score=95.00 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=45.3
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~-~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
.+...+ +..|+.++.+..|..+.+. +.+..++|++++ |. .+.|+ .+|+++|+| +.+||-.|
T Consensus 158 ~~~~~~-~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--gs--~Y~ak-kiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 158 ALQDKA-RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--GS--IYHAK-KIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHH-HHcCeEEecCcceeeEeeccCCCceeEEEecc--CC--eeecc-eEEEEecHH-HHhhcCcc
Confidence 344444 6889999999999999876 355556666655 65 68997 599999986 56777654
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.97 E-value=2.9e-09 Score=109.10 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=38.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~ 275 (512)
+.+|++++ .+.|.+|+.+ ++++.||.+.+ |. .+.|+ .||+|+|++-
T Consensus 112 ~~~nV~I~-q~~V~~Li~e-~grV~GV~t~d--G~--~I~Ak-~VIlATGTFL 157 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVE-NGRVVGVVTQD--GL--EFRAK-AVVLTTGTFL 157 (618)
T ss_pred cCCCcEEE-EeEEEEEEec-CCEEEEEEECC--CC--EEECC-EEEEeeCcch
Confidence 45689986 6789999988 88999999866 64 79997 7999999864
No 94
>KOG0042|consensus
Probab=98.97 E-value=1.5e-10 Score=112.69 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=59.5
Q ss_pred ccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCC
Q psy1059 194 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 272 (512)
Q Consensus 194 ~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaG 272 (512)
.+|......+..+.+|.....+ | .+. +.|+.+.-..+|.+|+.++++++.|++++|. +|+++.|+|+ .||-|+|
T Consensus 210 L~Ga~VYyDGQ~nDaRmnl~vA-l-TA~--r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATG 284 (680)
T KOG0042|consen 210 LKGAMVYYDGQHNDARMNLAVA-L-TAA--RNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAK-VVVNATG 284 (680)
T ss_pred ceeEEEEecCCCchHHHHHHHH-H-HHH--hcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEE-EEEeCCC
Confidence 4554444444445555544322 1 333 7899999999999999986779999999997 8999999996 7999999
Q ss_pred chhcHHHHH
Q psy1059 273 AIANAQLLL 281 (512)
Q Consensus 273 a~~t~~lL~ 281 (512)
.|. -.|.+
T Consensus 285 pfs-DsIr~ 292 (680)
T KOG0042|consen 285 PFS-DSIRK 292 (680)
T ss_pred Ccc-HHHHh
Confidence 874 44443
No 95
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.91 E-value=7.4e-09 Score=110.91 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.+||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 47999999999999999999998 999999999853
No 96
>PRK10015 oxidoreductase; Provisional
Probab=98.90 E-value=4.4e-09 Score=106.45 Aligned_cols=36 Identities=47% Similarity=0.687 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++|||||||+|++|+++|+.||++ |++|+||||++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999998 999999999874
No 97
>KOG1298|consensus
Probab=98.87 E-value=2.3e-09 Score=100.40 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=44.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
..+|+++..+ .|.+|+.| ++.++||++.+..|++.+..|. --|+|-|.|..
T Consensus 159 slpNV~~eeG-tV~sLlee-~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 159 SLPNVRLEEG-TVKSLLEE-EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred cCCCeEEeee-eHHHHHhc-cCeEEeEEEecCCCceEEEecc-eEEEecchhHH
Confidence 6789999866 58888888 8899999999987888899997 79999999865
No 98
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.86 E-value=6.9e-08 Score=98.19 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=43.8
Q ss_pred cccCCCCCEEEEcCcEEEEEEec-CC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy1059 219 PIAGKRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 219 ~~~~~~~g~~v~~~~~V~~i~~~-~~--~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~ 275 (512)
..+ ++.|++++++|+|++|+.+ ++ ++|+||++... .++...+.+++.||++.|++.
T Consensus 234 ~~L-e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 234 KYL-EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHH-HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 344 6889999999999999985 34 78999999751 233455667779999999885
No 99
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.86 E-value=4.9e-09 Score=101.90 Aligned_cols=46 Identities=28% Similarity=0.545 Sum_probs=38.0
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 275 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~ 275 (512)
+.+|++|+ +.+|+.|..+ +++|.||.+.+ |+ .+.++ .||+|+|.|.
T Consensus 107 ~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~--g~--~~~a~-~vVlaTGtfl 152 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVE-NGKVKGVVTKD--GE--EIEAD-AVVLATGTFL 152 (392)
T ss_dssp TSTTEEEE-ES-EEEEEEC-TTEEEEEEETT--SE--EEEEC-EEEE-TTTGB
T ss_pred cCCCeEEE-EcccceEEec-CCeEEEEEeCC--CC--EEecC-EEEEeccccc
Confidence 66899997 6799999999 99999998865 76 79997 7999999943
No 100
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.86 E-value=4.6e-08 Score=98.34 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=34.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
..++||||||+|++|+++|++|+++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 4578999999999999999999999 9999999998743
No 101
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=8.8e-09 Score=105.86 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
+.+||||||||.+|+++|.+||++ |++|+||||....+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence 468999999999999999999999 999999999887643
No 102
>KOG2404|consensus
Probab=98.85 E-value=1.8e-08 Score=92.21 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=45.4
Q ss_pred CCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhc
Q psy1059 225 TNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 225 ~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.-++|.++++|.+|+.+ +|+|.||++.|.+|+...+.++ .||+|+|+|.-
T Consensus 158 e~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 35899999999999987 9999999999988888888888 79999999985
No 103
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.83 E-value=1.1e-08 Score=105.88 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=46.7
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
|...+ ++.|++|+++++|++|..+ ++++.||++.+ |+ ++.|+ .||+|+|.+.+-..|+
T Consensus 235 L~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGL-EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHH-HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHhC
Confidence 44455 6789999999999999998 88999998865 65 68898 6999999877664443
No 104
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.83 E-value=1.9e-08 Score=101.05 Aligned_cols=37 Identities=41% Similarity=0.700 Sum_probs=34.6
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.+|||||||+|++|++||+.|+++ |++|+|||++..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 479999999999999999999998 9999999999854
No 105
>PRK06185 hypothetical protein; Provisional
Probab=98.78 E-value=8.4e-08 Score=97.09 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
+.+|++++.+++|+++..+ ++++++|.+...+| +.+++++ .||.|.|+.. .+-...|+.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~~S--~vr~~~gi~ 178 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRAD-LVVGADGRHS--RVRALAGLE 178 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEeC-EEEECCCCch--HHHHHcCCC
Confidence 4469999999999999988 78888888875333 3579997 7999999753 244445554
No 106
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.77 E-value=4.3e-08 Score=87.97 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+++|||+|++|+++|+.|.++ |++|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCC
Confidence 699999999999999999998 999999999974
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.74 E-value=5.9e-08 Score=98.60 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=38.1
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 1 ~~~~~~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
|.|...+....+|+|||+|++|+++|.+|.++ |.+|+|+|+++..
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~v 45 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQV 45 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 45543445568999999999999999999998 9999999998754
No 108
>PRK07208 hypothetical protein; Provisional
Probab=98.72 E-value=6.7e-07 Score=92.52 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=34.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
+..||||||+|++|+++|++|+++ |.+|+|+|+.+..+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 467999999999999999999998 99999999988764
No 109
>PLN02985 squalene monooxygenase
Probab=98.72 E-value=2.4e-07 Score=95.67 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=40.4
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 278 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~ 278 (512)
+.+|+++..+ +|++++.+ ++.++||++.+.+|++.+++|+ -||.|.|....-+
T Consensus 159 ~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~Ad-LVVgADG~~S~vR 211 (514)
T PLN02985 159 SLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAP-LTVVCDGCYSNLR 211 (514)
T ss_pred hCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECC-EEEECCCCchHHH
Confidence 4568999855 68888777 7788899987656777778897 7888888765433
No 110
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.70 E-value=2.6e-07 Score=96.81 Aligned_cols=44 Identities=32% Similarity=0.436 Sum_probs=37.7
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 1 ~~~~~~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|+...+...++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred CCCCCCccCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 44444446689999999999999999999998 999999999863
No 111
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.69 E-value=4.3e-08 Score=98.41 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=29.3
Q ss_pred EEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 14 IIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 14 iVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
||||+|++|+++|..|+++ |++|+|||+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence 6999999999999999998 999999999874
No 112
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.68 E-value=2.8e-07 Score=93.53 Aligned_cols=38 Identities=34% Similarity=0.514 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
...+|||+|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 34579999999999999999999998 999999999874
No 113
>PRK06126 hypothetical protein; Provisional
Probab=98.67 E-value=3.7e-07 Score=95.92 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..++||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 4579999999999999999999998 99999999875
No 114
>KOG2844|consensus
Probab=98.65 E-value=9.5e-08 Score=95.77 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=45.3
Q ss_pred cccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 219 PIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 219 ~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
.++ ++.|+.|+.+|.|++|..+ .++..||++.. |. |++. .||=|||.|. ...-.++|+.
T Consensus 195 ~~A-~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~--G~---iet~-~~VNaaGvWA-r~Vg~m~gvk 253 (856)
T KOG2844|consen 195 RAA-SALGALVIENCPVTGLHVE-TDKFGGVETPH--GS---IETE-CVVNAAGVWA-REVGAMAGVK 253 (856)
T ss_pred HHH-HhcCcEEEecCCcceEEee-cCCccceeccC--cc---eecc-eEEechhHHH-HHhhhhcCCc
Confidence 344 6889999999999999988 55566998876 74 9998 5999999775 4444456654
No 115
>KOG2415|consensus
Probab=98.65 E-value=7e-08 Score=91.48 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=56.2
Q ss_pred chhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec----CCe-------EEEEecCcEEEEcCCchh--cH
Q psy1059 211 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGE-------TVRVTANKEVILTAGAIA--NA 277 (512)
Q Consensus 211 ~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~----~g~-------~~~v~A~k~VVlaaGa~~--t~ 277 (512)
.-...+|.... +..|++|+.+..+.++++++++.|.||.+.|. +|. -..++|+ .-|+|-|.-+ |-
T Consensus 183 ~~~v~wLg~kA-Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Lsk 260 (621)
T KOG2415|consen 183 GQLVRWLGEKA-EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLSK 260 (621)
T ss_pred HHHHHHHHHHH-HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhHH
Confidence 33456776655 78899999999999999987899999998873 232 1478896 7999988765 57
Q ss_pred HHHHHcCCC
Q psy1059 278 QLLLLSGIG 286 (512)
Q Consensus 278 ~lL~~Sgig 286 (512)
+++.+-.+.
T Consensus 261 qi~kkf~Lr 269 (621)
T KOG2415|consen 261 QIIKKFDLR 269 (621)
T ss_pred HHHHHhCcc
Confidence 777765443
No 116
>PRK06370 mercuric reductase; Validated
Probab=98.64 E-value=5.1e-07 Score=92.84 Aligned_cols=36 Identities=42% Similarity=0.604 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+|||||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 3469999999999999999999998 99999999974
No 117
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.63 E-value=1.2e-07 Score=93.89 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccc
Confidence 58999999999999999999998 999999999874
No 118
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.63 E-value=7.1e-08 Score=98.51 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCc
Confidence 69999999999999999999998 99999999953
No 119
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.63 E-value=2.2e-07 Score=93.56 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
...+||+|||+|++|+++|+.|+++ |.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 4579999999999999999999998 999999999863
No 120
>PRK08244 hypothetical protein; Provisional
Probab=98.62 E-value=4.3e-07 Score=94.19 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999998 999999999864
No 121
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-07 Score=89.98 Aligned_cols=59 Identities=27% Similarity=0.436 Sum_probs=47.4
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
+..++++++++.+++|.-+ + +.+|.+.+..|++..+..+ .|+++-|..-...|+...++
T Consensus 190 ~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 3458999999999999866 4 8899998844777788998 69999998777777776553
No 122
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.2e-07 Score=93.41 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=40.2
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
+.+|+.|+.+ .|+.|+.+++.+|+||.+.+ |. .+.|+ .|||++|+|-.-++
T Consensus 112 ~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--G~--~~~a~-aVVlTTGTFL~G~I 162 (621)
T COG0445 112 NQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--GP--EFHAK-AVVLTTGTFLRGKI 162 (621)
T ss_pred cCCCceehHh-hhHHHhhcCCCeEEEEEeCC--CC--eeecC-EEEEeecccccceE
Confidence 6789999865 58888887244799999887 76 79997 79999999854444
No 123
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.60 E-value=7.2e-08 Score=87.45 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=37.9
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcC
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 284 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sg 284 (512)
.||.... ++.+++++++++|+++..+ +++ .-|++.+ + .+++|+ .||+|+|.+..|+.+..-|
T Consensus 86 ~yl~~~~-~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~--~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYA-ERFGLEIRFNTRVESVRRD-GDG-WTVTTRD--G--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHH-HHTTGGEETS--EEEEEEE-TTT-EEEEETT--S---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHH-hhcCcccccCCEEEEEEEe-ccE-EEEEEEe--c--ceeeee-eEEEeeeccCCCCcccccc
Confidence 4666655 6678889999999999998 554 3355543 5 468897 6999999988888876443
No 124
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.58 E-value=3.7e-07 Score=94.71 Aligned_cols=61 Identities=28% Similarity=0.264 Sum_probs=45.9
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
|...+ ++.|++|+++++|++|+.+ +++++||.+.+. +|+..++.|+ .||+++....+.+||
T Consensus 238 L~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 238 LVEAL-KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHH-HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 44444 5679999999999999998 788899988762 1222468998 699999976665554
No 125
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=9.7e-07 Score=90.84 Aligned_cols=33 Identities=33% Similarity=0.670 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
+|||||||||++|+.+|.+|++. |++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 49999999999999999999998 9999999993
No 126
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.2e-06 Score=91.92 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=47.6
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
|.... .+.|++++.++.+++|+.+++|+|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 132 L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGN-LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHH-hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 33334 56799999999999999854789999998653 6887889996 89999999874
No 127
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=2.5e-07 Score=95.32 Aligned_cols=36 Identities=33% Similarity=0.617 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...||+||||||++|+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 4579999999999999999999998 99999999864
No 128
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.53 E-value=9.1e-07 Score=88.71 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.+||+|||+|++|+++|..|+++ |.+|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 58999999999999999999998 9999999997
No 129
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.53 E-value=3.9e-07 Score=93.61 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=39.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
+.+|++++.+ .|..++.++++++.||.+.+ |. .++|+ .||+|+|+|...++.
T Consensus 108 ~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--G~--~I~Ad-~VILATGtfL~g~ih 159 (617)
T TIGR00136 108 NQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--GL--KFRAK-AVIITTGTFLRGKIH 159 (617)
T ss_pred cCCCcEEEEe-EEEEEEEecCCcEEEEEECC--CC--EEECC-EEEEccCcccCCCEE
Confidence 4568999755 67788765367899999866 64 69997 799999999644443
No 130
>PLN02507 glutathione reductase
Probab=98.53 E-value=2.2e-07 Score=95.87 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
..+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 4479999999999999999999998 999999997
No 131
>PRK06847 hypothetical protein; Provisional
Probab=98.52 E-value=1.5e-06 Score=86.97 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+..||+|||+|++|+++|..|++. |.+|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 467999999999999999999998 999999999763
No 132
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.52 E-value=1.4e-06 Score=89.59 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999975
No 133
>PRK06116 glutathione reductase; Validated
Probab=98.51 E-value=2.4e-07 Score=94.91 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+|||||||+|++|+.+|.+|+++ |++|+|+|++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 479999999999999999999998 99999999863
No 134
>PRK06184 hypothetical protein; Provisional
Probab=98.51 E-value=1.6e-06 Score=90.20 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 58999999999999999999998 999999999763
No 135
>PRK09126 hypothetical protein; Provisional
Probab=98.50 E-value=2.8e-06 Score=85.53 Aligned_cols=35 Identities=43% Similarity=0.499 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999998 999999999874
No 136
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.50 E-value=3e-07 Score=91.77 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=45.9
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
..|...+ ++.|++++++++|.++..+ +++++.+... +|+...++++ .||||+|.+.+..|
T Consensus 263 ~aL~~~l-~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~--~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 263 NALRRAF-ERLGGRIMPGDEVLGAEFE-GGRVTAVWTR--NHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEee--CCceEEEECC-EEEEeCCCcccCce
Confidence 3344555 5789999999999999987 7777776633 4666789998 69999998755544
No 137
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=3.3e-07 Score=94.30 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 579999999999999999999998 99999999865
No 138
>PRK06834 hypothetical protein; Provisional
Probab=98.49 E-value=1.7e-06 Score=89.16 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++||||||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999998 999999999763
No 139
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=3.1e-07 Score=94.32 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+||+||||+|++|..+|.+|++. |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3469999999999999999999998 99999999864
No 140
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=1.5e-06 Score=85.86 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=49.9
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
|...+ ++.|++++.+++|+++..+ ++++++|.+.+ ++...++|+ .||||+|+|-|..|+...
T Consensus 269 L~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~--g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN--HRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEecC--CccceEECC-EEEEccCCCcCHHHHhhc
Confidence 33444 5789999999999999998 88899887654 434579998 699999999888887654
No 141
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.48 E-value=9.8e-07 Score=88.73 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 57999999999999999999998 99999999987
No 142
>PRK07045 putative monooxygenase; Reviewed
Probab=98.47 E-value=1.5e-06 Score=87.28 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+..+||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 3568999999999999999999998 999999999874
No 143
>PLN02697 lycopene epsilon cyclase
Probab=98.46 E-value=1e-06 Score=90.55 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=32.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
+..|||||||+|++|+++|..|+++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 4469999999999999999999998 9999999985
No 144
>KOG2665|consensus
Probab=98.46 E-value=1.2e-06 Score=80.26 Aligned_cols=213 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCCCCCCccCCccccccCCccccceecccccCcccCCCCcee
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI 85 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (512)
....||.||||+|+.|+..|++|.-+ |+++|+|||+.....-.+ .+ ++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq--Sg--------------------------hN--- 93 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ--SG--------------------------HN--- 93 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee--cc--------------------------cc---
Confidence 34679999999999999999999754 999999999987431100 00 00
Q ss_pred eeecCcccchhhhhcCceeecCChhhHHHHHHcCCCCCChhhHHHHHHHhccCcCCCcCCCCCCCCCCCceeeccCCCCC
Q psy1059 86 KITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE 165 (512)
Q Consensus 86 ~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 165 (512)
+..+.+++|..+. .+...-=. . ..+-+-.|+++-+ ..+...|.+-+......
T Consensus 94 ----------SgViHaGIYY~P~--SLKAklCV--~--G~~LlY~yc~e~~-----------IpyKk~GKLIVAt~~~E- 145 (453)
T KOG2665|consen 94 ----------SGVIHAGIYYKPG--SLKAKLCV--E--GRELLYEYCDEKK-----------IPYKKTGKLIVATESEE- 145 (453)
T ss_pred ----------cceeeeeeeeCCc--ccchhhhh--c--cHHHHHHHhhhcC-----------CChhhcceEEEEeChhh-
Confidence 1122333443322 11111000 0 1122223332221 11233455544443333
Q ss_pred cchHHHHHHHHHHHcCCCCCCCCCC-----CCc-ccceeecccccCCCee-cc-hhhhhhhcccCCCCCEEEEcCcEEEE
Q psy1059 166 NNIIREIFETSAQELGYPCPKDMND-----RYV-DVGFAELPGMTRYGLR-FS-AADAYLTPIAGKRTNLYVLKRSKVTK 237 (512)
Q Consensus 166 ~~~~~~~~~~~~~~~G~~~~~~~~~-----~~~-~~g~~~~~~~~~~~~r-~~-~~~~~l~~~~~~~~g~~v~~~~~V~~ 237 (512)
-+..+.++......|++-..-+.+ .+| +.|..... ....|.- +. ....+... . +..+..+.+|-++.+
T Consensus 146 -iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~-sPhtGIvD~~~v~ls~~ed-F-~~~gg~i~~n~~l~g 221 (453)
T KOG2665|consen 146 -IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALL-SPHTGIVDWGSVTLSFGED-F-DFMGGRIYTNFRLQG 221 (453)
T ss_pred -cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhc-CCCcceeehHHHHHHHHHH-H-HHhcccccccceecc
Confidence 456666666666666653211111 111 22322211 1112211 11 11223323 4 567899999999999
Q ss_pred EEecCCCe--EEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCCC
Q psy1059 238 VIINDQNV--ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 287 (512)
Q Consensus 238 i~~~~~~~--v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig~ 287 (512)
+... +.. -.-+.+.+ |+-.+++.. .||-|+| +.+.++-..||...
T Consensus 222 ~~~n-~~~~~~Ypivv~n--gk~ee~r~~-~~vtc~g-l~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 222 IAQN-KEATFSYPIVVLN--GKGEEKRTK-NVVTCAG-LQSDRCAALSGCEL 268 (453)
T ss_pred chhc-cCCCCCCceEEec--CccceeEEe-EEEEecc-ccHhHHHHHhCCCC
Confidence 9876 221 12233333 444577774 4555555 89999999999653
No 145
>PLN02463 lycopene beta cyclase
Probab=98.46 E-value=1.1e-06 Score=88.89 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 4469999999999999999999998 99999999965
No 146
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.45 E-value=2e-06 Score=86.34 Aligned_cols=33 Identities=45% Similarity=0.597 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 899999999999999999998 999999999974
No 147
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.45 E-value=1.6e-06 Score=87.02 Aligned_cols=36 Identities=39% Similarity=0.650 Sum_probs=33.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+||+||||+|++|.++|.++|+. |+||+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 3579999999999999999999998 99999999995
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.44 E-value=2.8e-06 Score=85.25 Aligned_cols=33 Identities=45% Similarity=0.640 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~~ 45 (512)
||||||+|++|+++|..|+++ | .+|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999998 9 99999999874
No 149
>PRK11445 putative oxidoreductase; Provisional
Probab=98.44 E-value=4e-06 Score=82.92 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.|||+|||+|++|+++|..|+++ .+|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 38999999999999999999974 89999999863
No 150
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.44 E-value=1.6e-06 Score=87.64 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
.|||||||+|++|+++|..|+++ +|.+|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 38999999999999999999998 2499999999863
No 151
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.43 E-value=2e-06 Score=88.38 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCe-EEEEecCcEEEEcCCchhcHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~-~~~v~A~k~VVlaaGa~~t~~l 279 (512)
++.|++|+++++|++|..+++++++||++.+.+|+ ..++.++ .||+|+..-...+|
T Consensus 224 ~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~~~~~~l 280 (453)
T TIGR02731 224 TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPVDIFKLL 280 (453)
T ss_pred HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCHHHHHhh
Confidence 45789999999999998753677999998762222 2368897 69999975333333
No 152
>PRK07233 hypothetical protein; Provisional
Probab=98.43 E-value=2.2e-06 Score=87.61 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
+|||||+|++|+++|+.|+++ |++|+|||+.+..+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence 589999999999999999998 999999999987643
No 153
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=5.8e-07 Score=92.56 Aligned_cols=35 Identities=40% Similarity=0.601 Sum_probs=32.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
..+||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~ 36 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAW 36 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 3579999999999999999999998 9999999984
No 154
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.40 E-value=8e-06 Score=79.24 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
...|++++.+|+|+.|+++ ++.+.+|...+ |. ++.++ .||||-|--+.-.+-
T Consensus 184 ~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~~-~vvlA~Grsg~dw~~ 235 (486)
T COG2509 184 ESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEAD-YVVLAPGRSGRDWFE 235 (486)
T ss_pred HhcCcEEEeeeEEEEEEec-CCceEEEEccC--Cc--EEecC-EEEEccCcchHHHHH
Confidence 5789999999999999998 77788888876 65 79998 799999965544443
No 155
>PLN02612 phytoene desaturase
Probab=98.39 E-value=9.6e-06 Score=85.09 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=34.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.+..+|+|||+|++|+++|++|+++ |++|+|+|+.+..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~ 128 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVL 128 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 3457999999999999999999998 9999999998765
No 156
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.38 E-value=3.4e-06 Score=87.92 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=50.4
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.+.|++++++++|++|..+ ++++.||++.+. +|+..+|+|+ .||+|||+| +.+|+...|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcCC
Confidence 4789999999999999988 889999999764 5666789997 699999975 6788877665
No 157
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.37 E-value=6.7e-06 Score=86.43 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 34679999999999999999999998 99999999986
No 158
>PRK07588 hypothetical protein; Provisional
Probab=98.37 E-value=6.5e-06 Score=82.83 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 799999999999999999998 99999999986
No 159
>PRK07190 hypothetical protein; Provisional
Probab=98.36 E-value=2.9e-06 Score=87.31 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+..+||||||+|++|+++|..|+++ |.+|+||||.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 3468999999999999999999998 999999999873
No 160
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.36 E-value=4.3e-07 Score=65.79 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=28.5
Q ss_pred EECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 15 IVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 15 VVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
|||+|++|+++|++|+++ |.+|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCccc
Confidence 899999999999999998 9999999999865
No 161
>KOG2853|consensus
Probab=98.36 E-value=1.8e-05 Score=73.54 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCC---CCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~---~g~~VlvlE~g~~~ 46 (512)
..+||+|||+|..|++.|+-|-++ .|++|+|+|+....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 478999999999999999988653 57999999998743
No 162
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.36 E-value=3.4e-06 Score=85.01 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 57999999999999999999998 99999999976
No 163
>PRK07236 hypothetical protein; Provisional
Probab=98.35 E-value=9.3e-06 Score=81.52 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..||||||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 47899999999999999999998 99999999976
No 164
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.33 E-value=9.7e-06 Score=80.97 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 37999999999999999999998 99999999975
No 165
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.31 E-value=7.9e-06 Score=82.01 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=32.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999998 99999999987
No 166
>KOG2852|consensus
Probab=98.31 E-value=9.4e-07 Score=80.06 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=46.1
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.+..+. ++.|++++.+ +|.+|..+ .+|+.+|-..-..+..+...+. .+|||||. +|++||...+|
T Consensus 153 i~sea~-k~~~V~lv~G-kv~ev~dE-k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAE-KRGGVKLVFG-KVKEVSDE-KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHH-hhcCeEEEEe-eeEEeecc-cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 455566 7788999987 57888755 7788877665322334466776 69999997 57888877654
No 167
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.31 E-value=2.7e-06 Score=86.17 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=35.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhCCCCCe-EEEEcCcCCC
Q psy1059 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDT 46 (512)
Q Consensus 6 ~~~~~~DviVVGsG~aG~~~A~~La~~~g~~-VlvlE~g~~~ 46 (512)
...+.+||+|||+|.+|+.+|++|.++ |.. ++++||....
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~ 44 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV 44 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence 456689999999999999999999998 888 9999998743
No 168
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.30 E-value=1.8e-06 Score=79.88 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
|.... ++.|..++.+-+|.+..+. +++++.|.+++ +....++|+ .+|||+|+|-|.-|.
T Consensus 264 L~~~f-~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn--~~diP~~a~-~~VLAsGsffskGLv 322 (421)
T COG3075 264 LQRQF-EQLGGLWMPGDEVKKATCK-GGRVTEIYTRN--HADIPLRAD-FYVLASGSFFSKGLV 322 (421)
T ss_pred HHHHH-HHcCceEecCCceeeeeee-CCeEEEEEecc--cccCCCChh-Heeeeccccccccch
Confidence 33444 5789999999999999999 99999999886 777789998 799999998765443
No 169
>PRK06753 hypothetical protein; Provisional
Probab=98.25 E-value=9.3e-06 Score=81.16 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999998 999999999874
No 170
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.24 E-value=1.7e-05 Score=83.34 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=48.0
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhc
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 276 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t 276 (512)
.|...+ .+.|++|+.++.|++|+.+ +|+|+||.+.+. +|+...++|+ .||||+|++..
T Consensus 124 ~L~~~~-~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 124 TLYQQN-LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHH-HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 344444 5789999999999999998 899999998653 6777889996 89999999874
No 171
>PRK05868 hypothetical protein; Validated
Probab=98.20 E-value=2.8e-05 Score=77.52 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 799999999999999999998 999999999863
No 172
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.20 E-value=1.5e-06 Score=88.37 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+.+|||||||+|++|+++|..||++ |++|+|||+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 45679999999999999999999998 99999999964
No 173
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.19 E-value=7.4e-06 Score=84.15 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=43.1
Q ss_pred CCCCEEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~--~~--~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
++.|++|+++++|++|..+. ++ ++++|++.+.++ ...+.+| .||+|+......+||-
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhCC
Confidence 56899999999999999861 22 488888865111 1358898 6999999888777764
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.19 E-value=1.4e-05 Score=83.19 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=48.5
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
+..|+++++++.|.++.-+ ++++++|++.+. +|+..++.++ .|+++.|...++.++..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 3479999999999999876 788999998864 4666789999 799999987777777544
No 175
>PRK07538 hypothetical protein; Provisional
Probab=98.17 E-value=1.5e-05 Score=80.87 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 799999999999999999998 99999999976
No 176
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.15 E-value=8.8e-05 Score=75.78 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+||+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 3468999999999999999999998 9999999997643
No 177
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.13 E-value=1.9e-06 Score=88.09 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
++|||||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 469999999999999999999998 99999999964
No 178
>PLN02487 zeta-carotene desaturase
Probab=98.13 E-value=2.4e-05 Score=81.29 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=42.6
Q ss_pred CCCCEEEEcCcEEEEEEec-C-CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIIN-D-QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~-~-~~--~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
++.|++|++++.|++|+.+ + ++ +++||++.. .+....+.+| .||+|++.....+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEECC-EEEECCCHHHHHHhC
Confidence 6789999999999999987 1 23 589999852 2333358888 799999987666665
No 179
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.12 E-value=2e-06 Score=86.38 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
|||||||+|++|+++|+.|+++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999997
No 180
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.10 E-value=2.8e-06 Score=81.83 Aligned_cols=34 Identities=41% Similarity=0.692 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|||+|||+|++|+++|+.|+++ |.+|+|||+.+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999874
No 181
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.08 E-value=9.9e-06 Score=83.70 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
-|+|||+|++|+++|..|.+. |.+|+++||.+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence 489999999999999999998 99999999988543
No 182
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.06 E-value=3e-06 Score=86.27 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=37.6
Q ss_pred hhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCc
Q psy1059 213 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 273 (512)
Q Consensus 213 ~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa 273 (512)
...+|.... .+.|++++.++ |.++..++++.+++|++.+ |+ +++|+ -||=|+|.
T Consensus 156 fd~~L~~~A-~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~--g~--~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 156 FDQFLRRHA-EERGVEVIEGT-VVDVELDEDGRITAVRLDD--GR--TIEAD-FFIDASGR 209 (454)
T ss_dssp HHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--SE--EEEES-EEEE-SGG
T ss_pred HHHHHHHHH-hcCCCEEEeCE-EEEEEEcCCCCEEEEEECC--CC--EEEEe-EEEECCCc
Confidence 335566544 56799999885 7777776578899998876 65 79998 78888884
No 183
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=4.6e-06 Score=77.08 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=33.9
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.||+||||||.+|++.|..|++. |++||||||-+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence 48999999999999999999998 99999999987653
No 184
>PRK09897 hypothetical protein; Provisional
Probab=98.05 E-value=8.4e-05 Score=76.63 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 46 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~ 46 (512)
.+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999875 34699999997643
No 185
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.04 E-value=3.4e-05 Score=75.85 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=39.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
.+.|++++.+++|+.|..+ ++++++|...+ | +++|+ .||+|+|++ +++|+
T Consensus 148 ~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~a~-~vV~a~G~~-~~~l~ 197 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS--G---DVQAD-QVVLAAGAW-AGELL 197 (337)
T ss_pred HHcCCEEEccceEEEEEee-CCEEEEEEcCC--C---EEECC-EEEEcCChh-hhhcc
Confidence 5789999999999999987 78888887533 4 58998 699999975 44443
No 186
>PTZ00058 glutathione reductase; Provisional
Probab=98.04 E-value=4.4e-06 Score=86.87 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+||+||||+|++|..+|.+|++. |++|+|||++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 3579999999999999999999998 99999999964
No 187
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.03 E-value=4.6e-06 Score=83.91 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
++|||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 469999999999999999999998 99999999975
No 188
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.03 E-value=4.6e-06 Score=83.83 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
..+||||||+|++|+++|+.|++. |.+|+|||+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 468999999999999999999998 999999999874
No 189
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.01 E-value=6.4e-06 Score=82.79 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+.|||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 3468999999999999999999998 99999999976
No 190
>KOG1335|consensus
Probab=98.00 E-value=2.5e-05 Score=73.92 Aligned_cols=36 Identities=25% Similarity=0.564 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+||++|||+|++|-+||.+.|+. |++...+|+..
T Consensus 37 ~~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~ 72 (506)
T KOG1335|consen 37 ANDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRG 72 (506)
T ss_pred CccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccC
Confidence 3689999999999999999999998 99999999954
No 191
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.00 E-value=5.9e-06 Score=83.55 Aligned_cols=34 Identities=41% Similarity=0.608 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+|||+|||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999998 99999999986
No 192
>PRK08013 oxidoreductase; Provisional
Probab=98.00 E-value=5.7e-06 Score=83.44 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|||+|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 58999999999999999999998 999999999874
No 193
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.99 E-value=5.6e-06 Score=84.63 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+|||||||+|++|+.+|.+|+++ |++|+|+|+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence 69999999999999999999998 99999999975
No 194
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.3e-05 Score=72.08 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=51.8
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
.-+|++|++|+.-++|.=+ +.+|+|++++++ +|+.+.+.-. .|++--|-+-++.+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 5589999999999999887 899999999997 7888888887 699999999899998755
No 195
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.99 E-value=5.3e-06 Score=83.39 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+||||||+|++|+++|+.||++ |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999998 99999999964
No 196
>KOG0029|consensus
Probab=97.98 E-value=7.1e-06 Score=83.66 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=36.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
..+..+|||||||++|++||+.|.+. |.+|+|||+-++.+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence 45578999999999999999999998 99999999988764
No 197
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=6.2e-06 Score=84.70 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
+||+||||+|++|+.+|.+|++. |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 59999999999999999999998 9999999974
No 198
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.96 E-value=8.4e-06 Score=80.20 Aligned_cols=36 Identities=44% Similarity=0.663 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
+||+|||+|++|+++|++|++. |.+|+|||+....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 7999999999999999999987 99999999976543
No 199
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=7.6e-06 Score=84.20 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=32.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 69999999999999999999998 99999999964
No 200
>KOG0405|consensus
Probab=97.95 E-value=6e-05 Score=70.42 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 6 ~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
....+||++|||+|.+|..+|++.|+. |.||.|+|...
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f 53 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASH-GAKVALCELPF 53 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhc-CceEEEEecCC
Confidence 455689999999999999999999998 99999999973
No 201
>KOG1399|consensus
Probab=97.94 E-value=3.1e-05 Score=77.61 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.-+|+|||+|++||++|+.|.+. |..|+++||.+..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIG 42 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCcc
Confidence 34799999999999999999998 99999999998543
No 202
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.94 E-value=3e-05 Score=79.66 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999998 99999999865
No 203
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=8.3e-06 Score=83.30 Aligned_cols=34 Identities=35% Similarity=0.596 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 69999999999999999999998 99999999986
No 204
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.92 E-value=9.3e-06 Score=81.43 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+|||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 48999999999999999999998 99999999875
No 205
>KOG2311|consensus
Probab=97.92 E-value=1.8e-05 Score=76.81 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=32.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...|||||||+|.|||-+|...|+- |.+.++|-..-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeeccc
Confidence 4679999999999999999999998 99999987654
No 206
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.90 E-value=1.2e-05 Score=82.83 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.+|||||||+|++|+.+|.+|++. |++|+|+|+++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 469999999999999999999998 9999999997543
No 207
>PRK14694 putative mercuric reductase; Provisional
Probab=97.90 E-value=1.1e-05 Score=82.95 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 45689999999999999999999998 99999999975
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=1.1e-05 Score=84.69 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.+.|||||||||++|+++|.+|++. |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 3469999999999999999999998 999999999753
No 209
>PTZ00367 squalene epoxidase; Provisional
Probab=97.89 E-value=1.3e-05 Score=83.40 Aligned_cols=37 Identities=46% Similarity=0.574 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+.+|||||||+|++|+++|..|+++ |.+|+||||..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 34679999999999999999999998 99999999975
No 210
>PRK13748 putative mercuric reductase; Provisional
Probab=97.89 E-value=1e-05 Score=85.41 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+|||||||+|++|+.+|.+|++. |++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 479999999999999999999998 99999999974
No 211
>PRK06996 hypothetical protein; Provisional
Probab=97.88 E-value=1.4e-05 Score=80.51 Aligned_cols=43 Identities=42% Similarity=0.509 Sum_probs=36.0
Q ss_pred CCCCCCC-CCcccEEEECCChhHHHHHHHHhCCCC----CeEEEEcCcC
Q psy1059 1 MTPYVKS-GDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGG 44 (512)
Q Consensus 1 ~~~~~~~-~~~~DviVVGsG~aG~~~A~~La~~~g----~~VlvlE~g~ 44 (512)
|+|...+ +++|||+|||+|++|+++|..|+++ | ++|+|+|+.+
T Consensus 1 ~~~~~~~~~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 1 MTTAASMAAPDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred CchhhhccCCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 4554443 5579999999999999999999987 5 5899999976
No 212
>PLN02546 glutathione reductase
Probab=97.88 E-value=1e-05 Score=84.15 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
..+|||||||+|++|..+|.+|++. |++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3469999999999999999999998 999999996
No 213
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.87 E-value=1.4e-05 Score=81.57 Aligned_cols=33 Identities=45% Similarity=0.720 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhC----CCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~----~~g~~VlvlE~g~ 44 (512)
|||||||+|++|+++|..|++ + |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 6 99999999964
No 214
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.84 E-value=1.7e-05 Score=79.09 Aligned_cols=33 Identities=52% Similarity=0.719 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHH--hCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRL--SEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~L--a~~~g~~VlvlE~g~~ 45 (512)
||||||+|++|+++|++| ++. |++|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence 899999999999999999 665 999999999874
No 215
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.83 E-value=1.6e-05 Score=80.02 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
||||||+|++|+++|+.|+++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999998 999999999863
No 216
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.81 E-value=1.7e-05 Score=83.74 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.+|||||||+|++|..+|.++++. |+||+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 379999999999999999999998 9999999975
No 217
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.81 E-value=1.7e-05 Score=76.64 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|||+|||+|++|+++|..|++. |.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999998 99999999986
No 218
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.79 E-value=2e-05 Score=81.16 Aligned_cols=34 Identities=44% Similarity=0.737 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.+||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 359999999999999999999998 9999999994
No 219
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.79 E-value=2e-05 Score=81.57 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
..||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 469999999999999999999998 9999999974
No 220
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.78 E-value=2.3e-05 Score=79.23 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.+||+|||+|++|+++|..|+++ |.+|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999998 9999999996
No 221
>PLN02268 probable polyamine oxidase
Probab=97.77 E-value=2.4e-05 Score=79.90 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
+|||||+|++|++||+.|.++ |++|+|||+.++.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence 799999999999999999998 999999999988743
No 222
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.74 E-value=2.8e-05 Score=79.96 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.+||+||||+|++|..+|.++++..|++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 57999999999999999999998328999999985
No 223
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.72 E-value=2.8e-05 Score=79.85 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCC--CeEEEEcCcCCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTP 47 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g--~~VlvlE~g~~~~ 47 (512)
+|+|||||++|++||++|+++ | .+|+|+|+.+..+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 599999999999999999997 7 8999999988763
No 224
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.71 E-value=3.8e-05 Score=81.60 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhC-CCCCeEEEEcCcCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGD 45 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~-~~g~~VlvlE~g~~ 45 (512)
+.+++||+|||+|++|+++|..|++ . |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCC
Confidence 4568999999999999999999998 6 999999999763
No 225
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.70 E-value=3.3e-05 Score=76.65 Aligned_cols=33 Identities=42% Similarity=0.663 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~ 44 (512)
||||||+|++|+++|.+|+++ +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999974 699999999986
No 226
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.69 E-value=5.2e-05 Score=74.10 Aligned_cols=38 Identities=34% Similarity=0.437 Sum_probs=35.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.+..||||||+|.+||++|++|.++ |++|+|||+.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCc
Confidence 5678999999999999999999998 9999999998865
No 227
>PLN02576 protoporphyrinogen oxidase
Probab=97.68 E-value=4.5e-05 Score=79.37 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=35.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
....+||||||||++|+++|++|+++.|.+|+|||+.+..+
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 34568999999999999999999974279999999998764
No 228
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.67 E-value=4.1e-05 Score=77.17 Aligned_cols=35 Identities=49% Similarity=0.589 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhCC--CCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~--~g~~VlvlE~g 43 (512)
..+||+|||+|++|+++|+.|+++ .|.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999873 39999999995
No 229
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=4e-05 Score=76.23 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=32.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
|+|+|+|+||+++|++||++ |++|+|+|+++..+
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 89999999999999999999 99999999999864
No 230
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.65 E-value=0.00036 Score=68.17 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=27.5
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+.||+|+||.|++++++|..|.+....+++.||+-+.
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 3589999999999999999999884599999999774
No 231
>PRK10262 thioredoxin reductase; Provisional
Probab=97.63 E-value=4.9e-05 Score=74.22 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=46.1
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec--CCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~--~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
.+...+ ++.|+++++++.|+++.-+ ++++.+|++.+. .++..++.++ .||++.|.-..+.|+
T Consensus 190 ~~~~~l-~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 190 RLMDKV-ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred HHHhhc-cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 344445 6789999999999999765 567888888763 2345679998 799999976666544
No 232
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.63 E-value=4.7e-05 Score=75.23 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-||+|||+|++||.+|+.||++ |++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 4899999999999999999998 999999998764
No 233
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.61 E-value=0.00076 Score=67.59 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=37.7
Q ss_pred hhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 217 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 217 l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
|...+ .+ |++++++++|++|..+ +++ ..|++. +|. .++|+ .||+|+|++ ++.|+
T Consensus 141 l~~~~-~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~--~g~--~~~a~-~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 141 LLAHA-GI-RLTLHFNTEITSLERD-GEG-WQLLDA--NGE--VIAAS-VVVLANGAQ-AGQLA 194 (381)
T ss_pred HHhcc-CC-CcEEEeCCEEEEEEEc-CCe-EEEEeC--CCC--EEEcC-EEEEcCCcc-ccccc
Confidence 33444 56 9999999999999887 554 334433 354 47898 699999976 34444
No 234
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.59 E-value=0.00099 Score=65.64 Aligned_cols=59 Identities=32% Similarity=0.422 Sum_probs=43.1
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcC
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 284 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sg 284 (512)
.+....+ ++.|++|++++.|+++..+ +|.+.+ |+. +|.++ .||-|||.=.+|-+-..+|
T Consensus 213 ~~a~~~L-~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~~-tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 213 KYAERAL-EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPAD-TVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHHHH-HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEecC-EEEEcCCCcCChhhhhcCh
Confidence 3455556 7899999999999999876 677766 443 69998 7999999655554433344
No 235
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.59 E-value=6.4e-05 Score=77.46 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHHHhCC-C--CCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEV-S--SLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~-~--g~~VlvlE~g~~~~ 47 (512)
..||||||+|++|+++|++|+++ + |.+|+|+|+.+..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 36899999999999999999986 3 89999999988763
No 236
>PLN02676 polyamine oxidase
Probab=97.58 E-value=7.6e-05 Score=76.86 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=35.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDTPI 48 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~~~~ 48 (512)
....+||||||+|++|+++|++|+++ |. +|+|||+....+.
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG 64 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence 34578999999999999999999998 98 6999999987643
No 237
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.56 E-value=8.1e-05 Score=67.17 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
||||||+|++|+.+|.+|++. +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998865
No 238
>PLN02568 polyamine oxidase
Probab=97.56 E-value=8.7e-05 Score=77.09 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.5
Q ss_pred cccEEEECCChhHHHHHHHHhCCCC-----CeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g-----~~VlvlE~g~~~~ 47 (512)
..||||||+|++|+++|++|++. | .+|+|||+....+
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence 47999999999999999999986 6 8999999988764
No 239
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.54 E-value=0.0012 Score=67.75 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=45.3
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
.++...+ ++.|++++++++|.+|.. ++++..+.. ++. ++.++ .||+|+|...+..+|..+|+.
T Consensus 195 ~~l~~~l-~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 195 DVMEEEL-RENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHH-HHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 3444455 678999999999999953 344555543 233 58998 699999987777788888763
No 240
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.54 E-value=0.00075 Score=67.95 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=43.5
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.++...+ ++.|+++++++.|+++..+ +. ..|++. +|+ ++.++ .||+|+|...++.|+..+|+
T Consensus 190 ~~l~~~l-~~~GV~i~~~~~V~~i~~~--~~-~~v~l~--~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 190 RYLLQRH-QQAGVRILLNNAIEHVVDG--EK-VELTLQ--SGE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHH-HHCCCEEEeCCeeEEEEcC--CE-EEEEEC--CCC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 3444444 5789999999999998643 22 234443 365 68898 79999998777777766665
No 241
>PRK14727 putative mercuric reductase; Provisional
Probab=97.53 E-value=9.2e-05 Score=76.41 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
....||+||||+|++|+.+|.+|++. |.+|+|+|++..
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~ 50 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV 50 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence 34579999999999999999999998 999999999753
No 242
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.51 E-value=8.5e-05 Score=76.54 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
+||+||||+|++|..+|.+|++. |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 69999999999999999999998 9999999985
No 243
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.50 E-value=9.8e-05 Score=77.67 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.+.++|+|||||++|+++|..|+++ |.+|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 4569999999999999999999998 99999999975
No 244
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.47 E-value=0.0001 Score=75.96 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhCC-----CCCeEEEEcCcCCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGGDTP 47 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~-----~g~~VlvlE~g~~~~ 47 (512)
+|||||+|++|++||++|+++ .|.+|+|||+.+..+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 599999999999999999985 148999999998764
No 245
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.46 E-value=0.00015 Score=79.63 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
..++|+|||||+||++||++|++. |++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence 458999999999999999999998 9999999998754
No 246
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.44 E-value=0.0054 Score=61.27 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhCC---CCCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~---~g~~VlvlE~g~~~~ 47 (512)
+-++-|||||+|+|++|.+|.+. ||.+|.+||+-+..+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 34688999999999999999986 889999999987543
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=0.00013 Score=75.94 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=43.3
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHH
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL 282 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~ 282 (512)
..|+++++++.|+++.-+ ++++++|++.+. +|+..++.++ .||+|.|..-++.+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 368999999999988766 678888888763 3555678888 69999997766666643
No 248
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.41 E-value=0.00013 Score=72.50 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.||+|||+|.+||.+|..||++ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3799999999999999999998 999999998764
No 249
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.41 E-value=0.00014 Score=74.38 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
+.++++++++.|+++..+ ++.+ .|++. +|+ ++.++ .||+|.|.-.+..+|
T Consensus 221 ~~gI~i~~~~~V~~i~~~-~~~v-~v~~~--~g~--~i~~D-~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQD-GDGV-TLTLD--DGS--TVTAD-VLLVATGRVPNGDLL 270 (452)
T ss_pred hcCCEEEeCCEEEEEEEc-CCeE-EEEEc--CCC--EEEcC-EEEEeeccCcCCCCc
Confidence 357999999999999876 4432 23332 354 68998 699999976555553
No 250
>PRK12831 putative oxidoreductase; Provisional
Probab=97.41 E-value=0.00021 Score=73.30 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
....||+|||+|++|+++|++|++. |++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 4568999999999999999999998 9999999997653
No 251
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.41 E-value=0.00015 Score=81.13 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
++.|+++++++.|.++.- ++++.+|++...+|+..++.++ .|+++.|..-+..|+...|.
T Consensus 362 ~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCC
Confidence 578999999999999864 4567788877423555679998 79999998888888877764
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=97.36 E-value=0.00022 Score=76.07 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=35.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.....||+|||+|++|+++|..|+++ |++|+|+|+.+..+
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 34568999999999999999999998 99999999987653
No 253
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.35 E-value=0.00018 Score=72.66 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+|+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 699999999999999999998 99999999976
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=97.34 E-value=0.0002 Score=73.26 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHH
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 280 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL 280 (512)
+.+++++++++|+++..+ ++.+ .|++. +|+ ++.++ .||+|+|...+..+|
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~--~g~--~i~~D-~vl~a~G~~pn~~~l 267 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGV-TLRLD--DGS--TVEAD-VLLVATGRVPNGDLL 267 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEE-EEEEC--CCc--EeecC-EEEEEECCccCcccc
Confidence 457999999999999866 4432 23332 354 68998 699999987666664
No 255
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.33 E-value=0.00032 Score=52.77 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=30.6
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++|||+|..|+-+|..|++. |.+|.|||+.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccch
Confidence 79999999999999999998 999999999985
No 256
>KOG2614|consensus
Probab=97.33 E-value=0.0002 Score=69.03 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+-+|||||||++|+++|..|.++ |.+|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence 45799999999999999999998 99999999944
No 257
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.32 E-value=0.0002 Score=71.51 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=31.6
Q ss_pred EEEECCChhHHHHHHHHhCCCC--CeEEEEcCcCCCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTP 47 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g--~~VlvlE~g~~~~ 47 (512)
|+|||+|++|+++|++|.++ + ..|+|+|++++.+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCC
Confidence 89999999999999999998 6 9999999998764
No 258
>KOG2960|consensus
Probab=97.31 E-value=8.6e-05 Score=64.42 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 46 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~ 46 (512)
+.||||||+|.+|+++||..+++ |.++|.+||+.-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 56999999999999999999965 99999999997544
No 259
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.31 E-value=0.00051 Score=64.48 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
...-+|.|||||++|++||+.|+++ .+|+|.|++...+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlG 43 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLG 43 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc--cceEEEecccccc
Confidence 3456899999999999999999974 8999999998654
No 260
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.30 E-value=0.00025 Score=69.38 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
-+++|||+|++|+.||..||+. |.+|.|+|+.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 4799999999999999999998 99999999998764
No 261
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.27 E-value=0.0083 Score=51.60 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.7
Q ss_pred EEECCChhHHHHHHHHhCC----CCCeEEEEcCcCC
Q psy1059 14 IIVGASAAGCVLANRLSEV----SSLKVLLIEAGGD 45 (512)
Q Consensus 14 iVVGsG~aG~~~A~~La~~----~g~~VlvlE~g~~ 45 (512)
+|||+|++|++++.+|.++ ...+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999876 3679999999654
No 262
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.27 E-value=0.00034 Score=75.11 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
...+|+|||+|++|+++|+.|++. |.+|+|+|+....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 468999999999999999999998 99999999987653
No 263
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.27 E-value=0.00028 Score=70.45 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
++++|||||+|.|..-+.+|..|++. |+|||.||+.+.++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 46799999999999999999999998 999999999998754
No 264
>KOG4716|consensus
Probab=97.19 E-value=0.00031 Score=65.47 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...+||.||||+|.+|+++|.++|.. |++|.+||-=.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~ 52 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVK 52 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecc
Confidence 45689999999999999999999998 99999999754
No 265
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.17 E-value=0.00047 Score=71.00 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec----------CCeEEEEecCcEEEEcCCchhc-HHHHHHcC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIAN-AQLLLLSG 284 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~----------~g~~~~v~A~k~VVlaaGa~~t-~~lL~~Sg 284 (512)
.+.|+++++++.+++|.-+ ++++++|++... .|+..++.++ .||+|.|...+ ..|+...|
T Consensus 340 ~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccC
Confidence 3679999999999999766 789999887521 2456789999 79999995433 34554444
No 266
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.17 E-value=0.00036 Score=70.76 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~~ 45 (512)
.|+|||+|++|+++|..|+++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 599999999999999999998 7 69999999763
No 267
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.16 E-value=0.00036 Score=71.69 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++||||+|++|+.+|.+|++. |++|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 599999999999999999998 999999999764
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.13 E-value=0.00055 Score=76.44 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||||++|+++|.+|+++ |++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 357999999999999999999998 9999999998754
No 269
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.12 E-value=0.0005 Score=76.04 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
...+|+|||||+||+++|++|+++ |++|+|+|+.+..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence 357899999999999999999998 99999999987653
No 270
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.12 E-value=0.00058 Score=70.13 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
....+|+|||+|++|+.+|..|+++ |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 3457999999999999999999998 9999999998754
No 271
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.12 E-value=0.00059 Score=74.48 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
....+|+|||||++|+++|.+|+++ |++|+|+|+.+..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~ 466 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEI 466 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 3467999999999999999999998 9999999996543
No 272
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.04 E-value=0.00068 Score=72.78 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999998754
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.03 E-value=0.0084 Score=59.96 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
++.|+++++++.|.++..+ ++. ..|.+.+ |+ ++.++ .||+|+|...++.++..+|+.
T Consensus 194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~--g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLDS--GR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HhCCCEEEECCeEEEEEcc-CCE-EEEEEcC--Cc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 3567888889999998765 433 2344433 65 68998 799999987777787777753
No 274
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.02 E-value=0.00074 Score=74.00 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||||++|+++|+.|+++ |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 456899999999999999999998 9999999998754
No 275
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.01 E-value=0.001 Score=67.96 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTP 47 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~~ 47 (512)
....|+|||||++|+.+|..|+++ .|++|+|+|+-+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 356899999999999999999862 399999999998653
No 276
>KOG0685|consensus
Probab=96.97 E-value=0.0009 Score=65.73 Aligned_cols=41 Identities=34% Similarity=0.445 Sum_probs=35.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.....-|||||+|++|+.||.+|-++....|+|+|+.++.+
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 34556899999999999999999977567899999998864
No 277
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.94 E-value=0.001 Score=72.15 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
....|+|||+|+||+++|++|++. |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 456899999999999999999998 99999999864
No 278
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.93 E-value=0.0011 Score=70.94 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 457999999999999999999998 9999999998754
No 279
>KOG1276|consensus
Probab=96.88 E-value=0.0015 Score=63.20 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTP 47 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~~ 47 (512)
...-+|+|||+|++|+++|++|++. +...|+|.|++++.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 3456899999999999999999998 555677899999864
No 280
>PLN03000 amine oxidase
Probab=96.86 E-value=0.0013 Score=70.95 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
....||+|||+|++|+.+|+.|++. |++|+|+|+.+..+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 3468999999999999999999998 99999999988763
No 281
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.83 E-value=0.001 Score=72.65 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
+|+|||+|++|+++|..|+++ +|.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 599999999999999999986 4899999999875
No 282
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.71 E-value=0.0018 Score=66.56 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999998754
No 283
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.71 E-value=0.0097 Score=65.38 Aligned_cols=58 Identities=9% Similarity=0.279 Sum_probs=43.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
++.|+++++++.|++|..++.+....|.+.+ |+ ++.++ .||+|+|.--+..|+..+|+
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVEARKTMRFAD--GS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCCceEEEEECC--CC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 4678999999999999754124455566554 65 68998 79999998877887777775
No 284
>KOG0404|consensus
Probab=96.70 E-value=0.0078 Score=53.11 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=48.8
Q ss_pred hhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHH
Q psy1059 215 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 281 (512)
Q Consensus 215 ~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~ 281 (512)
.+-.++. +.+|+++++++.+.+..-+ ++..-++.+++. +|++..+..+ .++.+-|---.+++|.
T Consensus 197 ~Mq~ra~-~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~-GlFf~IGH~Pat~~l~ 261 (322)
T KOG0404|consen 197 IMQQRAE-KNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVS-GLFFAIGHSPATKFLK 261 (322)
T ss_pred HHHHHHh-cCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccc-eeEEEecCCchhhHhc
Confidence 3445566 7899999999998877766 677788888775 7888889997 6999999544455554
No 285
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.70 E-value=0.0022 Score=63.44 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
...+|+|||+|++|+.+|..|++. |++|+|+|+.+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 346899999999999999999998 99999999987653
No 286
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.70 E-value=0.024 Score=59.17 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~ 385 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFAD 385 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCC
Confidence 799999999999999999988 99999999865
No 287
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.68 E-value=0.0026 Score=64.64 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 1 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 1 ~~~~~~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
|+......+..+|||||+|.+|+.+|.+|.+. +.+|+|||+.+..
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 56666667778999999999999999999875 8999999998764
No 288
>KOG3855|consensus
Probab=96.65 E-value=0.0019 Score=62.26 Aligned_cols=37 Identities=38% Similarity=0.627 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhCC---CCCeEEEEcCcCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD 45 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~---~g~~VlvlE~g~~ 45 (512)
..|||||||||+.|...|..|..+ .-+||+++|.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 479999999999999999999865 3579999999964
No 289
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.62 E-value=0.011 Score=64.74 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=42.7
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
++.|+++++++.|++|.-+ +++.+|++.+ |+ ++.++ .||+|+|.--++.|+..+|+
T Consensus 193 ~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 4568889999999888643 4566777665 65 68998 79999998777777777775
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.61 E-value=0.0024 Score=65.98 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
..+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 47999999999999999999998 9999999998753
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.59 E-value=0.025 Score=58.35 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHH--HHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l--L~~Sgi 285 (512)
++.|++++++++|+++..+ ++.+ .+.+...+|+..++.++ .||+|+|...+..+ |..+|+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEAD-KVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeC-EEEECcCcccCCCCCCchhcCc
Confidence 4578999999999999765 4433 34444224655679998 69999997655544 344443
No 292
>PLN02976 amine oxidase
Probab=96.58 E-value=0.0025 Score=71.48 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
..+||+|||+|++|+.+|+.|++. |++|+|||+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCC
Confidence 358999999999999999999998 9999999997665
No 293
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.54 E-value=0.0032 Score=67.37 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 357899999999999999999998 9999999999864
No 294
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.52 E-value=0.0026 Score=64.18 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHh-CCCCCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La-~~~g~~VlvlE~g~~~~ 47 (512)
..-|+|||||++|+.+|.+|+ +. |.+|.|+|+.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 346999999999999999875 55 99999999998763
No 295
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.38 E-value=0.0049 Score=65.11 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
..-+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 346899999999999999999998 9999999998754
No 296
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.37 E-value=0.033 Score=57.50 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
++.|++++++++|++|..+ ++.+ .+++.+.+|+..++.++ .||+|.|...+...
T Consensus 235 ~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~ 288 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTDG 288 (475)
T ss_pred HHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCCC
Confidence 3568999999999999866 4443 35554434555679998 69999997655543
No 297
>PRK13984 putative oxidoreductase; Provisional
Probab=96.29 E-value=0.0049 Score=65.73 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
....+|+|||+|++|+++|..|+++ |.+|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 3467899999999999999999998 9999999998754
No 298
>PRK10262 thioredoxin reductase; Provisional
Probab=96.21 E-value=0.081 Score=51.55 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence 699999999999999999998 99999999975
No 299
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.029 Score=55.77 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhCC--CCCeEEEEcCcCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDT 46 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~--~g~~VlvlE~g~~~ 46 (512)
++|+|||+|++|.++|.+|.+. +..+|.|+|.-+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999886 22349999997754
No 300
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.12 E-value=0.074 Score=51.09 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=42.3
Q ss_pred CCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhcHHHHHHc
Q psy1059 225 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 283 (512)
Q Consensus 225 ~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~~t~~lL~~S 283 (512)
.|+++++++.|.++..+ + ++.++++.+. +|+..++.++ .||+|+|.-.++.++..+
T Consensus 190 ~gv~~~~~~~v~~i~~~-~-~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD-N-KVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc-C-cEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 48899999999998755 3 6777777653 4666789998 799999976666666554
No 301
>PRK12831 putative oxidoreductase; Provisional
Probab=96.06 E-value=0.031 Score=57.36 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|+|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 99999998754
No 302
>KOG1439|consensus
Probab=95.91 E-value=0.0053 Score=59.02 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=36.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
.++|||||+|.|..=|+++..|+.+ |.+||.+||.+..+.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGG 41 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCc
Confidence 4579999999999999999999998 999999999998743
No 303
>KOG2403|consensus
Probab=95.88 E-value=0.012 Score=58.89 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=37.8
Q ss_pred CCccCCCCeEeccCCcEEEeeccCCCC-----CCCCchHHHHHHHHHHHHHHHhhc
Q psy1059 458 NAVVTPDLKVKGIKGLRVADISVLPNA-----IITQSDAISYMIGEKCADLVKTSY 508 (512)
Q Consensus 458 ~~VvD~~~rv~g~~nl~V~D~Sv~P~~-----~~~np~lTi~ala~r~a~~i~~~~ 508 (512)
.-+.++.++...++|||.|.-...-+. .+.|--|-+.-.+..+|..|++.+
T Consensus 415 ~~~~~~~g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~~ 470 (642)
T KOG2403|consen 415 VLTIREVGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEEL 470 (642)
T ss_pred eeeeccccccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 356677788899999999876554433 456778888888888888887654
No 304
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.87 E-value=0.0078 Score=61.46 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred hhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 216 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 216 ~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
.+...+ ++.|++++++++|+++. +. .|.+.+ |+ .+.++ .||+|+|..-++.+|..+|+
T Consensus 194 ~l~~~l-~~~gI~i~~~~~v~~i~---~~---~v~~~~--g~--~~~~D-~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 194 PILDEL-DKREIPYRLNEEIDAIN---GN---EVTFKS--GK--VEHYD-MIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHHH-HhcCCEEEECCeEEEEe---CC---EEEECC--CC--EEEeC-EEEECcCCCcChHHHHhcCc
Confidence 344445 67899999999999984 22 344443 54 57888 69999998777778877765
No 305
>KOG4405|consensus
Probab=95.78 E-value=0.011 Score=56.78 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.+.+|||||||.|..=.+.|...++. |.+||=||+.+.++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 56789999999999999999999998 99999999999874
No 306
>KOG1800|consensus
Probab=95.60 E-value=0.015 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 46 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~~ 46 (512)
...-|+|||||+||.-+|..|.++ ++.+|.|.|+-+.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 345799999999999999999885 78999999998865
No 307
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.022 Score=54.33 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=35.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
.|||||+|.|+-=|+.+..|+.+ |.+||.||+.+..+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 79999999999999999999998 99999999999864
No 308
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.41 E-value=0.02 Score=57.00 Aligned_cols=35 Identities=17% Similarity=0.407 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCC--CCCeEEEEcCcCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDT 46 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~--~g~~VlvlE~g~~~ 46 (512)
.|||||+|++|+.+|.+|.++ ++.+|+|+|+.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 389999999999999999743 47899999998764
No 309
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.012 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||+|.+|+-+|+.+|++ |.+|.|.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 489999999999999999999 999999997653
No 310
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.34 E-value=0.018 Score=58.41 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 47 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~ 47 (512)
-.|.|||||++|+.+|..|+++ |++|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 6899999999999999999998 99999999988754
No 311
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.26 E-value=0.019 Score=57.42 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~ 44 (512)
.+|||||+|++|+.+|..|.+. +..+|+||++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 3899999999999999999875 577999999876
No 312
>KOG1336|consensus
Probab=95.18 E-value=0.12 Score=51.18 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 282 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~ 282 (512)
++++++++.++.+.++....+|+++-|.+.+ |+ ++.|+ .||+..|+--...++..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--g~--~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--GK--TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEecc--CC--EeccC-eEEEeeccccccccccc
Confidence 5789999999999999876468999999988 76 89998 79999998777777765
No 313
>KOG3851|consensus
Probab=94.86 E-value=0.025 Score=52.81 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
.++|.|+|||+|.+|+..|.++.++ +.-+|.+||-.+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999999987 6668999997765
No 314
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.72 E-value=0.58 Score=45.85 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCc
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGA 273 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa 273 (512)
.+..++|+.+++|+.+..+++++ .-+.+.+. +++..++.+| .||+|+|-
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~D-~VilATGy 339 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHRQTGEEETLEVD-AVILATGY 339 (341)
T ss_dssp T---SEEETTEEEEEEEEES-SS-EEEEEEETTT--EEEEEES-EEEE---E
T ss_pred CCCCeEEeCCCEEEEEEECCCCE-EEEEEEECCCCCeEEEecC-EEEEcCCc
Confidence 34569999999999999882233 33555553 6778899999 79999993
No 315
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.68 E-value=0.035 Score=47.33 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
++|||+|..|+..|++|++. |.+|.++-+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999997 99999999987
No 316
>KOG2755|consensus
Probab=94.58 E-value=0.024 Score=51.42 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=30.3
Q ss_pred EEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
+||||+|+||-++|..||.. |..+||+|-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999987 8899999998774
No 317
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.35 E-value=0.11 Score=51.42 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCCeecchhhhhhhcccCCCCCEEEEcCcEEEEEEecCCCeEEEE
Q psy1059 170 REIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV 249 (512)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~l~~~~~~~~g~~v~~~~~V~~i~~~~~~~v~GV 249 (512)
.+.+++.+++.|++.... ..|..++ .. .+.......|...+ ++.|++|+++++|+.| + +++ ..+
T Consensus 56 ~~d~~~fF~~~Gi~~~~e------~~grvfP-~S----~~A~sVv~~L~~~l-~~~gV~i~~~~~V~~i--~-~~~-~~v 119 (376)
T TIGR03862 56 AVALQDWARGLGIETFVG------SSGRVFP-VE----MKAAPLLRAWLKRL-AEQGVQFHTRHRWIGW--Q-GGT-LRF 119 (376)
T ss_pred HHHHHHHHHHCCCceEEC------CCCEECC-CC----CCHHHHHHHHHHHH-HHCCCEEEeCCEEEEE--e-CCc-EEE
Confidence 456677788899875422 1222222 11 12222334444555 6899999999999999 4 332 345
Q ss_pred EEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 250 EYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 250 ~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
.+.. +. ..++|+ .||||+|+...|++
T Consensus 120 ~~~~--~~-~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 120 ETPD--GQ-STIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred EECC--Cc-eEEecC-EEEEcCCCcccccc
Confidence 4432 21 258998 69999999776654
No 318
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.32 E-value=0.045 Score=55.29 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
-+++|||+|..|+.+|..|+++ |++|+++|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence 5899999999999999999998 9999999999853
No 319
>KOG0399|consensus
Probab=94.11 E-value=0.069 Score=58.03 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=35.1
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCCCC
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 48 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~~~ 48 (512)
.-.-|.|||||++|+.+|..|-+. |..|+|-||.++.+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence 347799999999999999999998 999999999987643
No 320
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.97 E-value=0.066 Score=46.05 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.|||+|..|.++|..|+++ |.+|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999998 99999999965
No 321
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.65 E-value=0.08 Score=53.31 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 699999999999999999998 9999999998754
No 322
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.60 E-value=0.076 Score=46.77 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.|||+|..|...|..++.+ |++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 78999999999999999998 99999999976
No 323
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.19 E-value=0.095 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|.|||.|..|+++|..||++ |.+|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence 78999999999999999998 999999998763
No 324
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.14 E-value=0.099 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|.+|+-+|..|++. |.+|+|||+++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~ 214 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAADR 214 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCc
Confidence 699999999999999999998 999999999874
No 325
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.99 E-value=0.11 Score=47.71 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|-.|..+|..|++. |..|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 489999999999999999998 999999999874
No 326
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.93 E-value=0.11 Score=50.25 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|+..|.+|++. |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 499999999999999999998 99999999975
No 327
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.80 E-value=0.12 Score=52.74 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+.+|..|++. |.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 699999999999999999997 999999999874
No 328
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.47 E-value=0.14 Score=52.48 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 699999999999999999998 999999999874
No 329
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.46 E-value=0.14 Score=52.77 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|+|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCC
Confidence 699999999999999999998 999999999874
No 330
>PRK07846 mycothione reductase; Reviewed
Probab=92.46 E-value=0.15 Score=52.25 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
-.++|||+|..|+-+|..|++. |.+|+|+|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence 3699999999999999999998 9999999998753
No 331
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.44 E-value=0.13 Score=52.96 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-+++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 4799999999999999999998 99999999986
No 332
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.32 E-value=0.14 Score=56.23 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHhCC--CCCeEEEEcCcCCC
Q psy1059 13 IIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDT 46 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~--~g~~VlvlE~g~~~ 46 (512)
|||||+|++|+.+|.+|.+. .+.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998764 36799999998864
No 333
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.32 E-value=0.15 Score=52.56 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCc
Confidence 3699999999999999999998 999999999863
No 334
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.28 E-value=0.16 Score=52.20 Aligned_cols=33 Identities=30% Similarity=0.574 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|+|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 699999999999999999998 999999999873
No 335
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.15 E-value=0.17 Score=51.30 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-.|.-+++- |.+|+|||+++.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~ 207 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDR 207 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 399999999999999999998 999999999985
No 336
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.12 E-value=0.15 Score=49.28 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 489999999999999999998 99999999975
No 337
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.10 E-value=0.17 Score=49.11 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|+..|..|+++ |.+|.++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 499999999999999999998 99999999875
No 338
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.94 E-value=0.19 Score=51.81 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~ 208 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDR 208 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCC
Confidence 599999999999999999998 999999999773
No 339
>PRK06370 mercuric reductase; Validated
Probab=91.92 E-value=0.18 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCC
Confidence 3699999999999999999998 999999999874
No 340
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.85 E-value=0.19 Score=52.12 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|+|||+|.+|+.+|..|+++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999998 99999999765
No 341
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.80 E-value=0.19 Score=51.40 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 699999999999999999998 9999999998753
No 342
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.60 E-value=0.21 Score=51.44 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|+++|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCC
Confidence 699999999999999999998 999999999874
No 343
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.56 E-value=0.21 Score=51.42 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=30.0
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|.|||.|.+|+++|+.|+++ |.+|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 89999999999999999998 999999998764
No 344
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=91.52 E-value=0.21 Score=50.90 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.|+|||+|..|+-+|..|++. |.+|.++++++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 3699999999999999999998 99999999986
No 345
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.43 E-value=0.15 Score=51.60 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCch
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 274 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~ 274 (512)
..+.+|+++++|++|..+ +++++ |.+. +|+ ++.|+ .||+|+..-
T Consensus 221 ~~g~~i~l~~~V~~I~~~-~~~v~-v~~~--~g~--~~~ad-~VI~a~p~~ 264 (450)
T PF01593_consen 221 ELGGEIRLNTPVTRIERE-DGGVT-VTTE--DGE--TIEAD-AVISAVPPS 264 (450)
T ss_dssp HHGGGEESSEEEEEEEEE-SSEEE-EEET--TSS--EEEES-EEEE-S-HH
T ss_pred hcCceeecCCcceecccc-ccccc-cccc--cce--EEecc-eeeecCchh
Confidence 346699999999999998 66554 3333 465 79998 699999853
No 346
>KOG3923|consensus
Probab=91.34 E-value=0.21 Score=46.42 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.8
Q ss_pred cccEEEECCChhHHHHHHHHhC-----C-CCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSE-----V-SSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~-----~-~g~~VlvlE~g~ 44 (512)
..+++|||+|..||++|..+.+ . |-.+|.|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 4579999999999999977666 2 557888887654
No 347
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.34 E-value=0.23 Score=51.10 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 209 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDR 209 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 699999999999999999998 999999999873
No 348
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.14 E-value=0.23 Score=48.00 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
|.|||+|..|+..|..|+++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 89999999999999999998 999999998
No 349
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.05 E-value=0.25 Score=50.72 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTK 203 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 699999999999999999998 999999999874
No 350
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.03 E-value=0.31 Score=43.79 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.0
Q ss_pred CcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 9 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 9 ~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
+.--++|||+|-.|...|..|.+. |.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 344799999999999999999998 9999999753
No 351
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.03 E-value=0.26 Score=54.44 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCC---CCCeEEEEcCcCCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDT 46 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~---~g~~VlvlE~g~~~ 46 (512)
.|||||+|++|+.+|.+|.+. .+.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999753 36899999998864
No 352
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.00 E-value=0.26 Score=47.58 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+.|||+|..|+..|..|+++ |.+|.++++.+
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~ 33 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARRG 33 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECCh
Confidence 89999999999999999998 99999999843
No 353
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=90.89 E-value=0.26 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 699999999999999999998 999999999873
No 354
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.68 E-value=0.28 Score=46.87 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|||+|..|...|..|+++ |.+|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 489999999999999999998 99999999865
No 355
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.66 E-value=0.25 Score=47.23 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.|||+|..|...|..|+++ |.+|+++|+.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 89999999999999999998 99999999876
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.57 E-value=0.3 Score=50.03 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 599999999999999999998 999999999874
No 357
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.51 E-value=0.31 Score=52.09 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-.|..|++. |.+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCc
Confidence 699999999999999999998 999999999874
No 358
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.48 E-value=0.31 Score=38.47 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
...|+|||+|..|..-+..|.+. |.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 45699999999999999999998 9999999876
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.36 E-value=0.32 Score=47.02 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|||+|..|...|..++.+ |++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 389999999999999999998 99999999875
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.21 E-value=0.31 Score=46.48 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||+|..|...|..|+.+ |.+|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 489999999999999999998 999999999763
No 361
>PRK06116 glutathione reductase; Validated
Probab=90.15 E-value=0.35 Score=49.58 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-.++|||+|..|+-+|..|++. |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 3699999999999999999998 999999999873
No 362
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.13 E-value=0.36 Score=49.74 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 699999999999999999998 999999999874
No 363
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.13 E-value=0.2 Score=49.65 Aligned_cols=36 Identities=42% Similarity=0.682 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhCC-C-----------CCeEEEEcCcCCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEV-S-----------SLKVLLIEAGGDT 46 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~-~-----------g~~VlvlE~g~~~ 46 (512)
-+++|||+|+.|--+|.+|++. + ..+|.|+|+++..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 5799999999999999999863 1 2499999999964
No 364
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.03 E-value=0.33 Score=51.16 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|+++++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCc
Confidence 699999999999999999998 999999999874
No 365
>PLN02507 glutathione reductase
Probab=89.91 E-value=0.36 Score=50.16 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCC
Confidence 699999999999999999998 999999999863
No 366
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=89.81 E-value=0.36 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-.++|||+|..|+-+|..|.+. |.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcc
Confidence 4699999999999999999998 999999999874
No 367
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.71 E-value=0.45 Score=42.67 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
...|+|||+|..|+.+|..|++. |. +|.++|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 45699999999999999999998 98 699999874
No 368
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.67 E-value=0.42 Score=39.83 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCe-EEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~-VlvlE~g~ 44 (512)
.--++|||+|-+|-.+++.|++. |.+ |.|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 45699999999999999999998 876 99998864
No 369
>PTZ00058 glutathione reductase; Provisional
Probab=89.66 E-value=0.35 Score=50.84 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~ 270 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGN 270 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCcEEEEEecc
Confidence 699999999999999999998 99999999987
No 370
>PRK04148 hypothetical protein; Provisional
Probab=89.64 E-value=0.31 Score=40.20 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-.+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 459999999 888889999998 999999998874
No 371
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.63 E-value=0.41 Score=38.55 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|||||.|..|..+|..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 79999999999999999996 88999999986
No 372
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.56 E-value=0.57 Score=45.77 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=35.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 7 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 7 ~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
+.+.+|+|.||-|+.-+++|..|.++.+.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3457999999999999999999999866899999998853
No 373
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.53 E-value=1 Score=49.67 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCCEEEEcCcEEEEEEecCCCeEEEEEEEec-------------CC-------------eEEEEecCcEEEEcCCchhcH
Q psy1059 224 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------------KG-------------ETVRVTANKEVILTAGAIANA 277 (512)
Q Consensus 224 ~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-------------~g-------------~~~~v~A~k~VVlaaGa~~t~ 277 (512)
+.|+++..++...+|+.+++|+++++++... ++ .+.++.|+ .||+|+|.-...
T Consensus 652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~vi~A~G~~~~~ 730 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTK-TVIMAIGIENNT 730 (1028)
T ss_pred HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCC-EEEEecccCCcc
Confidence 7899999999999998875789999988631 12 45789998 799999975544
Q ss_pred HH
Q psy1059 278 QL 279 (512)
Q Consensus 278 ~l 279 (512)
.+
T Consensus 731 ~~ 732 (1028)
T PRK06567 731 QF 732 (1028)
T ss_pred cc
Confidence 44
No 374
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.50 E-value=0.63 Score=39.91 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=28.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEc
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIE 41 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE 41 (512)
.--++|||+|-.|.--|..|.+. |.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 44699999999999999999998 99999994
No 375
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.46 E-value=0.42 Score=49.05 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.|+|||+|..|+.+|..|+++ |++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3589999999999999999998 99999999965
No 376
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.45 E-value=0.42 Score=47.06 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~~ 45 (512)
+++|||+|-.|.++|..||++ + .+|++.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHH
Confidence 599999999999999999998 7 89999999853
No 377
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.36 E-value=0.56 Score=40.63 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=30.4
Q ss_pred CcccEEEECCCh-hHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 9 DCFDIIIVGASA-AGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 9 ~~~DviVVGsG~-aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
....++|||+|- +|..+|..|.++ |.+|.++.|..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECCc
Confidence 456799999996 699999999998 99999999863
No 378
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.28 E-value=0.41 Score=47.07 Aligned_cols=32 Identities=34% Similarity=0.593 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|+..|..|+++ |.+|.++++.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 399999999999999999998 99999999854
No 379
>PLN02546 glutathione reductase
Probab=89.23 E-value=0.42 Score=50.21 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccc
Confidence 799999999999999999998 999999999863
No 380
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.17 E-value=0.48 Score=48.46 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..|++. |.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 699999999999999999998 999999999863
No 381
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.15 E-value=0.51 Score=44.22 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~~ 45 (512)
...|+|||.|..|+.+|..|++. | .+++|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence 46799999999999999999998 8 68999998764
No 382
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.10 E-value=0.42 Score=50.01 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+|+|||+|..|+-+|..|++. +.+|+|+++++.
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~ 385 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPE 385 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECcc
Confidence 799999999999999999998 999999999874
No 383
>PRK13748 putative mercuric reductase; Provisional
Probab=88.96 E-value=0.45 Score=50.39 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. |.+|.||++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 699999999999999999998 99999999853
No 384
>PRK14694 putative mercuric reductase; Provisional
Probab=88.83 E-value=0.48 Score=48.84 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. |.+|+|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 699999999999999999998 99999999753
No 385
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.76 E-value=0.5 Score=45.29 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|++.|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 389999999999999999998 99999999865
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.74 E-value=0.57 Score=42.17 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
-|+|||+|..|..-|..|.+. |.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 699999999999999999998 9999999864
No 387
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.69 E-value=0.52 Score=45.17 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|||+|..|...|..|+.+ |.+|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 389999999999999999998 99999999865
No 388
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.69 E-value=0.47 Score=46.25 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+.|||+|..|++.|..||+. |..|+.+|..+
T Consensus 3 I~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 78999999999999999998 99999999865
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.54 E-value=0.49 Score=48.50 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|+|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 99999999875
No 390
>PRK14727 putative mercuric reductase; Provisional
Probab=88.49 E-value=0.5 Score=48.91 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 221 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARST 221 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 699999999999999999998 99999999753
No 391
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.33 E-value=0.57 Score=45.75 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
..-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcc
Confidence 35699999999999999999998 97 8999999763
No 392
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.11 E-value=0.57 Score=45.75 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+.|||+|..|...|..|+++ |.+|.++.|..
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 88999999999999999998 99999999854
No 393
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.08 E-value=0.52 Score=46.60 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCe-EEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~-VlvlE~g~ 44 (512)
.++|||+|..|+-+|..|++. |.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 599999999999999999887 886 99999865
No 394
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.05 E-value=0.51 Score=44.98 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 489999999999999999998 99999999765
No 395
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.00 E-value=0.66 Score=45.33 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
...|+|||+|..|+.+|..|++. |. +|.++|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 45799999999999999999998 88 899999965
No 396
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.89 E-value=0.55 Score=45.23 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+.|+|+|+.|+-.|++|+++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 78999999999999999998 889999988873
No 397
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.82 E-value=0.55 Score=48.84 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 699999999999999999998 9999999874
No 398
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.61 E-value=0.66 Score=44.69 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
-|.|||+|..|+.+|+.|+.+ |. +|+++|.-.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 389999999999999999987 76 899999843
No 399
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.56 E-value=0.63 Score=38.75 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
.-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence 4589999999999999999998 87 7999998764
No 400
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.55 E-value=0.77 Score=41.17 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-++|+|.|-.|..+|.+|.+. |.+|++.|+..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 499999999999999999998 99999998764
No 401
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.54 E-value=0.79 Score=38.55 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
|+|||.|..|+.+|..|++. |. ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence 79999999999999999998 87 7999998764
No 402
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.52 E-value=0.72 Score=40.34 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
|+|||+|..|+.+|..|++. |. ++.++|....
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEE
Confidence 79999999999999999998 88 5999999763
No 403
>KOG2304|consensus
Probab=87.48 E-value=0.67 Score=41.34 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=35.2
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 3 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 3 ~~~~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
....+...-.|-|||+|..|+-.|.-.|.. |+.|.|+++...
T Consensus 4 ~s~~~~~~~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~ 45 (298)
T KOG2304|consen 4 ASANMAEIKNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED 45 (298)
T ss_pred cccccccccceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence 333455566799999999999999999987 999999999863
No 404
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.45 E-value=0.56 Score=48.55 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence 599999999999999999998 9999999973
No 405
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.25 E-value=0.69 Score=47.02 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 285 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgi 285 (512)
++.|++++++++|.++.-+ .|.+.+ |+ ++.++ .||+++|.-.+ .++..+++
T Consensus 239 ~~~gV~v~~~~~v~~v~~~------~v~~~~--g~--~i~~d-~vi~~~G~~~~-~~~~~~~l 289 (424)
T PTZ00318 239 RRLGVDIRTKTAVKEVLDK------EVVLKD--GE--VIPTG-LVVWSTGVGPG-PLTKQLKV 289 (424)
T ss_pred HHCCCEEEeCCeEEEEeCC------EEEECC--CC--EEEcc-EEEEccCCCCc-chhhhcCC
Confidence 4678999999999888532 355544 65 68898 79999985444 46666654
No 406
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.99 E-value=0.75 Score=47.55 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHh---CCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLS---EVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La---~~~g~~VlvlE~g~~ 45 (512)
.++|||+|..|+-+|..++ +. |.+|.|+|+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCc
Confidence 5999999999999997554 44 899999999874
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.78 E-value=0.98 Score=44.83 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
..+++|||+|.+|..+|..|... |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 45699999999999999999988 99999999864
No 408
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.63 E-value=0.84 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCC--CeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g--~~VlvlE~g~~ 45 (512)
.|.|||+|..|+++|+.|+.+ | ..|.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence 489999999999999999998 8 58999998653
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.62 E-value=0.71 Score=46.64 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||.|..|++.|..|+++ |.+|.++|+.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 389999999999999999998 999999998653
No 410
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.45 E-value=0.97 Score=44.16 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|||+|..|...|..|+++ |.+|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 499999999999999999998 99999999964
No 411
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.21 E-value=0.83 Score=43.85 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.|||+|..|...|..|+.+ |.+|.+.|+.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 99999999999999999998 99999999865
No 412
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.07 E-value=0.82 Score=44.55 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|+..|..|+++ |.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 389999999999999999998 99999999865
No 413
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.87 E-value=1 Score=43.63 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 499999999999999999998 99999999755
No 414
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.85 E-value=1.2 Score=40.11 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
+.-|+|||.|..|+.+|..|++. |. ++.++|....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEE
Confidence 45799999999999999999998 86 8999998753
No 415
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=85.70 E-value=0.81 Score=46.29 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.7
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|.|||.|..|+..|..|+++ |.+|+++++.+.
T Consensus 3 I~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence 88999999999999999998 999999998653
No 416
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=85.56 E-value=1 Score=42.83 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
-.|+|||+|.+|.++|+.|++. |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4699999999999999999988 86 799999864
No 417
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.27 E-value=1.1 Score=38.90 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.-|+|+|+|.+|.-||.-|... |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 5699999999999999999998 99999999865
No 418
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.12 E-value=1.2 Score=41.14 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCC----------CCeEEEEcCcC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVS----------SLKVLLIEAGG 44 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~----------g~~VlvlE~g~ 44 (512)
.....|+|||+|..|+.+|..||+.. |.++.|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45678999999999999999999851 33888888765
No 419
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.09 E-value=0.97 Score=41.40 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC---eEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL---KVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~---~VlvlE~g~ 44 (512)
--++|+|+|.+|..+|..|++. |. +|.|++|..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 4699999999999999999988 87 499999975
No 420
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.79 E-value=1.1 Score=44.76 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 3699999999999999999887 99999999865
No 421
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.60 E-value=1.2 Score=40.56 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=28.2
Q ss_pred EEEEC-CChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVG-sG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
+.||| +|..|...|..|+++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 88997 799999999999998 99999998765
No 422
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.26 E-value=1.2 Score=45.77 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhCC-CCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~-~g~~VlvlE~g~~ 45 (512)
|.|||+|..|+++|..||++ .|.+|+.+|..+.
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 89999999999999999987 2588999997653
No 423
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.25 E-value=1.2 Score=45.76 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-++|+|+|..|.++|..|+++ |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 389999999999999999998 99999999765
No 424
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.23 E-value=1.4 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
...|+|||.|..|+.+|..|++. |. ++.++|....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcc
Confidence 46799999999999999999998 75 7899888764
No 425
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=84.20 E-value=1.1 Score=46.47 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||+|..|...|..|+++ |++|.+.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 389999999999999999998 999999998753
No 426
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.91 E-value=2 Score=32.50 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=28.6
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
.-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346999999999999999999863578999988
No 427
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.89 E-value=1.3 Score=42.77 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|.+..|..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 489999999999999999998 99999999864
No 428
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=83.85 E-value=1.2 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.|+|||+|.+|.-.|..|++. |.+|.|+=|.+.
T Consensus 177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 699999999999999999998 999999999884
No 429
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.76 E-value=1.4 Score=42.45 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhCCCC--CeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g--~~VlvlE~g~~ 45 (512)
|.|||+|..|.++|+.|+.+ | ..|.++++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 89999999999999999998 7 47999999654
No 430
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.61 E-value=1.1 Score=42.07 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.-+|+|||+|.+|.-+|.-+..- |.+|++||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 45799999999999999999987 99999999985
No 431
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=83.58 E-value=1.3 Score=45.63 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
-.|+|||+|..|+-+|..|++. |. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 3699999999999999999987 87 899999864
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.45 E-value=1.5 Score=39.63 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
..-|+|||+|..|+.+|..|++. |. ++.++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 45699999999999999999998 87 499999875
No 433
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.37 E-value=1.3 Score=42.56 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
|.|||+|..|..+|..|+.+ |+ .|.++|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 57999999999999999987 76 9999999753
No 434
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.11 E-value=1.7 Score=40.38 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
+..|+|||.|..|+.+|..|+.. |. ++.|+|....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence 46799999999999999999998 76 7999998753
No 435
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.05 E-value=1.3 Score=42.11 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.|||.|..|.+.|..|+++ |.+|+++++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 88999999999999999998 99999999864
No 436
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.91 E-value=1.4 Score=42.12 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCe-EEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~-VlvlE~g~ 44 (512)
-++|+|+|-+|.++|+.|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 589999999999999999998 886 99998864
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.71 E-value=2.1 Score=41.49 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC--eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~--~VlvlE~g~~ 45 (512)
..-|.|||+|..|..+|+.|+.. +. .++|+|....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCCc
Confidence 35799999999999999999987 77 7999998543
No 438
>PRK08328 hypothetical protein; Provisional
Probab=82.59 E-value=1.7 Score=39.94 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
..-|+|||.|..|+.+|..|++. |. ++.++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 35699999999999999999998 76 688988765
No 439
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.43 E-value=1.4 Score=45.71 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|-|||+|..|...|..|+.+ |+.|.+.|+.+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 389999999999999999998 999999998764
No 440
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.43 E-value=1.4 Score=47.88 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||+|..|.-.|..+|.+ |++|.++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 489999999999999999998 999999998763
No 441
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.30 E-value=1.6 Score=37.30 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=26.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-++|+|-|..|-.+|.+|... |.+|.|.|..|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 499999999999999999988 99999999976
No 442
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=82.27 E-value=1 Score=36.91 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 6 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 6 ~~~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
.......|-|||+|-.|..+|..|.++ |..|.-+..
T Consensus 6 ~~~~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~s 41 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTALARALARA-GHEVVGVYS 41 (127)
T ss_dssp ------EEEEECTSCCCCHHHHHHHHT-TSEEEEESS
T ss_pred cCCCccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEe
Confidence 345567899999999999999999998 999887764
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.14 E-value=1.5 Score=47.67 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|||+|..|.-.|..+|.+ |++|.++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999876
No 444
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.98 E-value=1.3 Score=45.44 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|+|||+|..|+=.|..|++. +.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 699999999999999999998 99999999875
No 445
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=81.97 E-value=1.5 Score=45.40 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|.|||+|..|...|..|+++ |.+|+|.|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 389999999999999999998 99999999865
No 446
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.95 E-value=1.7 Score=41.44 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.++|||.|..|..+|..|... |.+|.+.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4699999999999999999988 99999999865
No 447
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=81.91 E-value=1.5 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|-|||+|..|.-.|..+|.. |++|++.|..+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 388999999999999999986 99999999974
No 448
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.79 E-value=1.9 Score=39.63 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
+.-|+|||.|..|+.+|..|++. |. ++.++|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence 45799999999999999999998 87 7888888653
No 449
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.76 E-value=2 Score=40.83 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
|+|||+|.-|+.+|..|+.. |. +++++|.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence 89999999999999999998 87 7999998764
No 450
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.66 E-value=1.9 Score=33.26 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhCCCC---CeEEEE-cCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSS---LKVLLI-EAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g---~~Vlvl-E~g~ 44 (512)
+.|||+|-.|...+..|.++ | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 67899999999999999998 8 899976 8876
No 451
>PRK08223 hypothetical protein; Validated
Probab=81.60 E-value=1.8 Score=40.94 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
+.-|+|||.|..|+.+|.+||.. |. ++.++|-...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCCc
Confidence 45799999999999999999998 77 7899988764
No 452
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=81.59 E-value=1.7 Score=43.65 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhCCCCC------eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL------KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~------~VlvlE~g~~ 45 (512)
|+|||+|..||.++..||.. |. ++.|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 89999999999999999998 87 8999998764
No 453
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=81.41 E-value=1.5 Score=36.43 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
++|+|+|..+..+|.-+..- |++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999999999988 999999998753
No 454
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=81.23 E-value=1.9 Score=39.65 Aligned_cols=31 Identities=26% Similarity=0.614 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
|+|||+|..|+.++..|+.. |. ++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 79999999999999999998 76 688888865
No 455
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.95 E-value=2.1 Score=42.79 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
--|+|||.|..|..+|..|... |.+|+++|..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 3699999999999999999987 99999999866
No 456
>PRK06223 malate dehydrogenase; Reviewed
Probab=80.90 E-value=2 Score=41.50 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
.|.|||+|..|..+|..|+.. |. .|.++|..+
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 489999999999999999987 65 999999854
No 457
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=80.66 E-value=4.8 Score=42.67 Aligned_cols=57 Identities=19% Similarity=0.409 Sum_probs=41.5
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHHHHHcCCC
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 286 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~lL~~Sgig 286 (512)
++.|++++++..++.|.- .+++.+|+..| |. .+.|+ -||.|+|---...+...+|+.
T Consensus 198 e~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--G~--~i~ad-~VV~a~GIrPn~ela~~aGla 254 (793)
T COG1251 198 EDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--GT--EIPAD-LVVMAVGIRPNDELAKEAGLA 254 (793)
T ss_pred Hhhcceeecccchhhhhc--CcceeeEeecC--CC--cccce-eEEEecccccccHhHHhcCcC
Confidence 556677777666666654 46777888777 65 68888 799999977777777777764
No 458
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=80.60 E-value=2.4 Score=37.72 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred ccEEEECC-ChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGs-G~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.++|+|+ |..|..+|..|++. |.+|.++.|..
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~~ 62 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDL 62 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 46999996 99999999999998 99999998753
No 459
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.51 E-value=2.1 Score=38.25 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
+.-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 45799999999999999999998 87 499998875
No 460
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.41 E-value=2.9 Score=40.64 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
.-|.|||+|..|..+|+.|+.. |+ +|.|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 3599999999999999999987 85 8999998764
No 461
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.39 E-value=2 Score=45.06 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
..-|+|||+|.-|+.+|..|+.. |. +++++|.+..
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEE
Confidence 45699999999999999999998 87 6999998864
No 462
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=80.26 E-value=2 Score=44.81 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCc
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 43 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g 43 (512)
-++|+|+|.+|.++|+.|++. |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 589999999999999999998 9999999875
No 463
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=1.4 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.-||.|||+|-+|.-+|..||-- =..|+|||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 35899999999999999999965 568999997763
No 464
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.11 E-value=2.3 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
+.-|+|||.|..|+.+|..|+.. |. ++.++|-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 35699999999999999999998 87 588998875
No 465
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=79.92 E-value=2.3 Score=40.25 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3689999999999999999998 99999998864
No 466
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.90 E-value=2.2 Score=43.82 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-|.|+|.|.+|.++|..|.+. |.+|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 599999999999999999998 99999999875
No 467
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.90 E-value=2.3 Score=40.38 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
|+|||+|..|+.+|..|+.. |. ++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal~-Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALS-GFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCE
Confidence 89999999999999999998 76 688888765
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=79.87 E-value=2 Score=46.87 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|.|||+|..|.-.|..++.+ |++|.++|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHH
Confidence 489999999999999999998 999999998763
No 469
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=79.82 E-value=1.9 Score=41.25 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|-|||.|..|...|..|+++ |.+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 78999999999999999998 99999999875
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.75 E-value=2.5 Score=42.57 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
--|+|||.|..|..+|..|... |.+|++.|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 3599999999999999999988 99999999875
No 471
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=79.63 E-value=1.8 Score=47.52 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCe-EEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~-VlvlE~g~ 44 (512)
.|+|||+|..|+-+|..|.+. |.+ |+|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999998 887 99999865
No 472
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.44 E-value=2.4 Score=40.68 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
...++|||.|.+|..+|..|.+. |.+|.++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 35699999999999999999988 99999999875
No 473
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.39 E-value=2.4 Score=43.43 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-++|+|.|.+|.++|..|+++ |.+|.+.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 489999999999999999998 999999998664
No 474
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.34 E-value=2.1 Score=44.19 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.-.|+|+|+|.+|+.++..+... |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45799999999999999998887 99999999876
No 475
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.22 E-value=2 Score=44.09 Aligned_cols=33 Identities=39% Similarity=0.546 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
.|+|||+|..|..+|..|.+. |.+|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCHH
Confidence 489999999999999999998 999999998653
No 476
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.19 E-value=2.5 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=27.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|-|||-|..|...|.+|+++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 378999999999999999998 99999999865
No 477
>KOG2495|consensus
Probab=78.84 E-value=1.1 Score=44.21 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=0.0
Q ss_pred EEEECCChhHHHHHHHHhC--------------CCCCeEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSE--------------VSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~--------------~~g~~VlvlE~g~ 44 (512)
++|||+|+.|.-.|.+|+. . -.+|+++|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~-~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKK-DIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchh-heEEEeeccch
No 478
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.62 E-value=3 Score=37.92 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=28.3
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 42 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~ 42 (512)
..-|+|||+|..++-=+..|.+. |.+|+|+-.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap 56 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSK 56 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence 44699999999999999999998 999999954
No 479
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=78.53 E-value=2.6 Score=40.06 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~ 44 (512)
-.++|+|+|-+|..+|..|++. | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 4689999999999999999988 8 7999999865
No 480
>PRK08017 oxidoreductase; Provisional
Probab=78.41 E-value=2.7 Score=39.09 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=28.5
Q ss_pred EEEECC-ChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 13 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 13 viVVGs-G~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
++|+|+ |..|..+|..|+++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 899998 99999999999998 99999998754
No 481
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.25 E-value=2.4 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
|+|||+|..|+.+|..|+.. |. ++.|+|....
T Consensus 2 VlIVGaGGlG~EiaKnLal~-Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLT-GFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHh-cCCeEEEEcCCCc
Confidence 89999999999999999998 76 6899998753
No 482
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=78.24 E-value=2.5 Score=42.71 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhcHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 279 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~~g~~~~v~A~k~VVlaaGa~~t~~l 279 (512)
++.|++|+++++|++|..+ +++++.+.. . +|+ ++.++ .||+|.-.....+|
T Consensus 208 ~~~g~~i~~~~~V~~i~~~-~~~~~~~~~-~-~g~--~~~~d-~vi~a~p~~~~~~l 258 (419)
T TIGR03467 208 DSRGGEVRLGTRVRSIEAN-AGGIRALVL-S-GGE--TLPAD-AVVLAVPPRHAASL 258 (419)
T ss_pred HHcCCEEEcCCeeeEEEEc-CCcceEEEe-c-CCc--cccCC-EEEEcCCHHHHHHh
Confidence 4568999999999999988 665543322 2 354 58898 69998876554444
No 483
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=78.16 E-value=3.8 Score=38.41 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCCCCCCCCcccEEEEC-CChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 1 MTPYVKSGDCFDIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 1 ~~~~~~~~~~~DviVVG-sG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
|.+......+ -++|.| +|..|..+|..|+++ |.+|+++++..
T Consensus 1 ~~~~~~l~~k-~vlItG~s~gIG~~la~~l~~~-G~~v~~~~~~~ 43 (266)
T PRK06171 1 MQDWLNLQGK-IIIVTGGSSGIGLAIVKELLAN-GANVVNADIHG 43 (266)
T ss_pred CcccccCCCC-EEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4444433322 378887 478899999999998 99999998765
No 484
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.55 E-value=2.4 Score=42.37 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
|.|||.|..|+..|..|| . |++|+++|+...
T Consensus 3 I~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~~ 33 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-Q-NHEVVALDILPS 33 (388)
T ss_pred EEEECCCHHHHHHHHHHH-h-CCcEEEEECCHH
Confidence 789999999999998877 5 999999999764
No 485
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=77.53 E-value=3.2 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHhCCCC-CeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g-~~VlvlE~g~ 44 (512)
-.++|||+|..|...|..|++. | .+|.++++..
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCH
Confidence 4599999999999999999987 6 7899998864
No 486
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=77.53 E-value=3.6 Score=34.51 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=28.2
Q ss_pred cEEEECC-ChhHHHHHHHHhCC-CCCeEEEEcCcC
Q psy1059 12 DIIIVGA-SAAGCVLANRLSEV-SSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGs-G~aG~~~A~~La~~-~g~~VlvlE~g~ 44 (512)
.|.|||+ |..|..+|+.|... -..++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 3899999 99999999999987 234799999875
No 487
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.42 E-value=3.3 Score=38.00 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
..-|+|||.|..|+.+|..|++. |. +++|+|....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEE
Confidence 45699999999999999999998 87 8999998764
No 488
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.41 E-value=5.8 Score=39.06 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=41.9
Q ss_pred CCCCEEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCch-hcHHHHH
Q psy1059 223 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI-ANAQLLL 281 (512)
Q Consensus 223 ~~~g~~v~~~~~V~~i~~~~~~~v~GV~~~~~-~g~~~~v~A~k~VVlaaGa~-~t~~lL~ 281 (512)
.++++.++.+++|..++-..+|+ .-+.++.. +|+..+++.| .||||+|.= ..|.+|.
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhhh
Confidence 46899999999999999873344 44445443 6778899998 799999954 3454543
No 489
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=77.37 E-value=2.8 Score=39.52 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
.++|+|+|-++.++++.|++. |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 699999999999999999988 76 699999865
No 490
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.28 E-value=2.8 Score=44.27 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
+-.+||+|.|..|-.+|..|.++ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 35799999999999999999998 999999999763
No 491
>KOG2018|consensus
Probab=77.26 E-value=2.6 Score=39.53 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=27.0
Q ss_pred EEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
|||||+|-.|+.++.-|++. |. |+.++|=..
T Consensus 77 VVVVG~GgVGSwv~nmL~RS-G~qKi~iVDfdq 108 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRS-GVQKIRIVDFDQ 108 (430)
T ss_pred EEEEecCchhHHHHHHHHHh-cCceEEEechhh
Confidence 89999999999999999997 76 788887543
No 492
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.24 E-value=2.9 Score=41.65 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcCC
Q psy1059 10 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 45 (512)
Q Consensus 10 ~~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~~ 45 (512)
..-|+|||+|..|+.+|..|++. |. ++.++|....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d~v 170 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHDVV 170 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEe
Confidence 45699999999999999999998 87 7999998753
No 493
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=77.02 E-value=3.2 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCC-eEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~-~VlvlE~g~ 44 (512)
--++|+|+|-++-++|+.|++. |. +|.|+.|..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 161 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDT 161 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCH
Confidence 3589999999999999999988 75 799998864
No 494
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.01 E-value=2.9 Score=40.14 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
.|-|||.|..|...|..|+++ |.+|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 488999999999999999998 99999999865
No 495
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=76.88 E-value=5.3 Score=41.25 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCCC
Q psy1059 8 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 46 (512)
Q Consensus 8 ~~~~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~~ 46 (512)
....+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 3457999999999999999999998 9999999998754
No 496
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.84 E-value=3.1 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=27.4
Q ss_pred EEEECCChhHHHHHHHHhCCCCC--eEEEEcCcC
Q psy1059 13 IIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG 44 (512)
Q Consensus 13 viVVGsG~aG~~~A~~La~~~g~--~VlvlE~g~ 44 (512)
|.|||+|..|.++|+.|+.+ +. .+.|+|...
T Consensus 2 i~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~ 34 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALAL-GLFSEIVLIDVNE 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 78999999999999999987 65 699999854
No 497
>PLN02494 adenosylhomocysteinase
Probab=76.77 E-value=3.4 Score=41.92 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 11 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 11 ~DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
-.++|||.|..|..+|.+|... |.+|+++|+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4699999999999999999887 99999999876
No 498
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.76 E-value=3.3 Score=39.20 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCeEEEEcCcCC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 45 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g~~VlvlE~g~~ 45 (512)
-|+|||.|..|.+.|..|.++ |..|.++.+...
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~ 37 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRS 37 (279)
T ss_pred EEEEECCchHHHHHHHHHHHc-CCeEEEEeecCc
Confidence 489999999999999999998 999999988764
No 499
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.69 E-value=3 Score=38.22 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEECC-ChhHHHHHHHHhCCCCCeEEEEcCcC
Q psy1059 12 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 44 (512)
Q Consensus 12 DviVVGs-G~aG~~~A~~La~~~g~~VlvlE~g~ 44 (512)
=++|+|+ |..|..+|.+|+++ |.+|+++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 3888885 99999999999998 99999998754
No 500
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=76.55 E-value=3.1 Score=40.75 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHhCCCC--------CeEEEEcC
Q psy1059 12 DIIIVGASAAGCVLANRLSEVSS--------LKVLLIEA 42 (512)
Q Consensus 12 DviVVGsG~aG~~~A~~La~~~g--------~~VlvlE~ 42 (512)
.|.|||+|.-|.++|..|+++ | .+|.+-.+
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 378999999999999999998 8 89999987
Done!